AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0437730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0437730 MtrunA17_Chr5g0415171 90.837 251 22 1 1 250 1 251 2.15e-162 452
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0437730 AT1G59840.2 63.319 229 80 3 25 250 16 243 6.74e-97 286
Msa0437730 AT1G59840.1 63.319 229 80 3 25 250 16 243 6.74e-97 286
Msa0437730 AT1G59840.3 57.642 229 79 4 25 250 16 229 2.60e-83 251

Find 72 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAATCGCGTTTGGGGTTT+GGG 0.157929 3_3:-1730951 None:intergenic
ATTGGCTGTCACTAATATTT+TGG 0.169732 3_3:+1732007 Msa0437730:CDS
AGCAATTGCATTCTTCAATT+TGG 0.220838 3_3:+1733299 Msa0437730:CDS
CGCGTTTGGGGTTTGGGGTT+CGG 0.244937 3_3:-1730945 None:intergenic
CGAGCAGACCTCTTAACTTT+AGG 0.254418 3_3:+1731984 Msa0437730:CDS
GCTTACCACACTTATAGATT+TGG 0.289785 3_3:-1732057 None:intergenic
AGAAAATCGCGTTTGGGGTT+TGG 0.300727 3_3:-1730952 None:intergenic
CCCAGGATAAAGAGATAAAT+TGG 0.302853 3_3:-1733576 None:intergenic
TGATCCTTGCATCAATTTAT+CGG 0.323093 3_3:-1733372 None:intergenic
CTTACCACACTTATAGATTT+GGG 0.327187 3_3:-1732056 None:intergenic
GATGCAAGGATCAGTATATC+AGG 0.330105 3_3:+1733382 Msa0437730:CDS
TTTGCTGCAGAATCTTCTCC+TGG 0.331987 3_3:+1733323 Msa0437730:CDS
GCCAATTTATCTCTTTATCC+TGG 0.346357 3_3:+1733575 Msa0437730:CDS
TCAGGTAGAAAATCGCGTTT+GGG 0.371139 3_3:-1730958 None:intergenic
CTCTTCAATCGAACCATCTC+CGG 0.387017 3_3:+1731054 Msa0437730:CDS
TATCAGGGTGTTATGAAATC+TGG 0.393157 3_3:+1733398 Msa0437730:CDS
GTTGTTAAACTGTTTGCATT+TGG 0.396115 3_3:-1730757 None:intergenic
AGCTCCGTAAGTGCAACGTC+AGG 0.414347 3_3:-1732807 None:intergenic
ATCAGGTAGAAAATCGCGTT+TGG 0.417803 3_3:-1730959 None:intergenic
TAAACGGCACCAACGTAGAT+TGG 0.422117 3_3:-1731018 None:intergenic
TCTCCCTGACGTTGCACTTA+CGG 0.422359 3_3:+1732803 Msa0437730:CDS
CAGATCCTTCTAGACGTGTC+AGG 0.428753 3_3:+1733836 Msa0437730:intron
CTCCCGTCGCTGACGCCGGC+AGG 0.428765 3_3:+1731082 Msa0437730:CDS
TGAGTATTTGAAGGCAGAAA+TGG 0.446826 3_3:-1733611 None:intergenic
AACAACAAATTTCATTTCCA+TGG 0.451134 3_3:+1730774 Msa0437730:exon
CGCAATACCTGAGTATTTGA+AGG 0.456371 3_3:-1733620 None:intergenic
GTCAGCGACGGGAGCAATGC+CGG 0.463524 3_3:-1731073 None:intergenic
AAAGCCCTGACACGTCTAGA+AGG 0.469243 3_3:-1733841 None:intergenic
AACCTGCCGGCGTCAGCGAC+GGG 0.471542 3_3:-1731084 None:intergenic
TTGCACTTACGGAGCTGCTC+TGG 0.479043 3_3:+1732814 Msa0437730:CDS
AAACGGCACCAACGTAGATT+GGG 0.480694 3_3:-1731017 None:intergenic
AGACCTCTTAACTTTAGGAT+TGG 0.481817 3_3:+1731989 Msa0437730:CDS
GAGCGCAGTTCCCGCTTCCA+TGG 0.482634 3_3:-1730791 None:intergenic
CCAATTTATCTCTTTATCCT+GGG 0.500173 3_3:+1733576 Msa0437730:CDS
AAATTTCATTTCCATGGAAG+CGG 0.505242 3_3:+1730780 Msa0437730:exon
TACATGTTCAGAGAGTTACT+TGG 0.506725 3_3:+1733553 Msa0437730:intron
TTGCTGCAGAATCTTCTCCT+GGG 0.513330 3_3:+1733324 Msa0437730:CDS
GACGGGAGCAATGCCGGAGA+TGG 0.518855 3_3:-1731067 None:intergenic
ATTGCTCCCGTCGCTGACGC+CGG 0.519333 3_3:+1731078 Msa0437730:CDS
ATTTCTGCCTTCAAATACTC+AGG 0.520975 3_3:+1733613 Msa0437730:CDS
AAAATCGCGTTTGGGGTTTG+GGG 0.521649 3_3:-1730950 None:intergenic
GAGTACGGCGAAGAGATAAA+CGG 0.533737 3_3:-1731034 None:intergenic
CAGCCAATCCTAAAGTTAAG+AGG 0.537186 3_3:-1731992 None:intergenic
AATTTCATTTCCATGGAAGC+GGG 0.538646 3_3:+1730781 Msa0437730:exon
GCAGAATCTTCTCCTGGGAA+TGG 0.549364 3_3:+1733329 Msa0437730:CDS
AATAACAAGTGATCGGCAGC+AGG 0.550991 3_3:-1733267 None:intergenic
CTTACAGCCTCGCCATTCCC+AGG 0.552428 3_3:-1733341 None:intergenic
AATGGCAGCTCAGACTTCCC+AGG 0.569160 3_3:-1733593 None:intergenic
CGTAAACAATAACAAGTGAT+CGG 0.569368 3_3:-1733274 None:intergenic
CGGCACCAACGTAGATTGGG+AGG 0.571107 3_3:-1731014 None:intergenic
GAACCTGCCGGCGTCAGCGA+CGG 0.576249 3_3:-1731085 None:intergenic
GATGGTTCGATTGAAGAGTA+CGG 0.587779 3_3:-1731049 None:intergenic
TTTGTCCAGGTAAATCCTCA+GGG 0.596877 3_3:+1732753 Msa0437730:intron
GCACCAACGTAGATTGGGAG+GGG 0.599147 3_3:-1731012 None:intergenic
ACGTGTCAGGGCTTTCTGCA+AGG 0.612718 3_3:+1733849 Msa0437730:CDS
AGATCCTTCTAGACGTGTCA+GGG 0.616079 3_3:+1733837 Msa0437730:intron
AGAATGTGAGTTTGAGTGTG+GGG 0.622360 3_3:-1730832 None:intergenic
TAAGAATGTGAGTTTGAGTG+TGG 0.625982 3_3:-1730834 None:intergenic
ATGCAAGGATCAGTATATCA+GGG 0.627292 3_3:+1733383 Msa0437730:CDS
AAAACCCAAATCTATAAGTG+TGG 0.629385 3_3:+1732052 Msa0437730:CDS
GAATGTGAGTTTGAGTGTGG+GGG 0.630266 3_3:-1730831 None:intergenic
ATCTTCTCCTGGGAATGGCG+AGG 0.633157 3_3:+1733334 Msa0437730:CDS
GCTCCGTAAGTGCAACGTCA+GGG 0.634286 3_3:-1732806 None:intergenic
TTCTTGCATTCAACTCCCTG+AGG 0.634438 3_3:-1732768 None:intergenic
AGAGTCAAACATTATCACAA+TGG 0.637009 3_3:+1733892 Msa0437730:CDS
GACACCGATAAATTGATGCA+AGG 0.639272 3_3:+1733368 Msa0437730:CDS
GGCACCAACGTAGATTGGGA+GGG 0.641224 3_3:-1731013 None:intergenic
CGACCCCTCCCAATCTACGT+TGG 0.642817 3_3:+1731009 Msa0437730:CDS
GAATGGCGAGGCTGTAAGTG+TGG 0.657721 3_3:+1733346 Msa0437730:CDS
AAGAATGTGAGTTTGAGTGT+GGG 0.675966 3_3:-1730833 None:intergenic
CAGGTAGAAAATCGCGTTTG+GGG 0.684893 3_3:-1730957 None:intergenic
TGTCAGGGCTTTCTGCAAGG+AGG 0.708067 3_3:+1733852 Msa0437730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTATTTGAGAAAATTAT+TGG - chr3_3:1731516-1731535 None:intergenic 10.0%
!!! ATATATTTTTGCAAATATTT+TGG - chr3_3:1732475-1732494 None:intergenic 10.0%
!! AAAATTATTGGAGATATAAT+AGG - chr3_3:1731504-1731523 None:intergenic 15.0%
!!! AATTTTAAACAAATCTACAA+AGG - chr3_3:1732266-1732285 None:intergenic 15.0%
!! ATGATTGAAATTTGAAAATT+TGG + chr3_3:1732923-1732942 Msa0437730:intron 15.0%
!!! ATCTTTTATTAACTTTTATC+AGG + chr3_3:1733219-1733238 Msa0437730:intron 15.0%
!!! TCTTTTATTAACTTTTATCA+GGG + chr3_3:1733220-1733239 Msa0437730:intron 15.0%
!!! TCTGATTTTTACAGTTTTAA+CGG + chr3_3:1730690-1730709 Msa0437730:five_prime_UTR 20.0%
!! TCATAACAAAAATTACATGT+CGG - chr3_3:1731324-1731343 None:intergenic 20.0%
!!! GTAATTTTTGTTATGAAACA+TGG + chr3_3:1731328-1731347 Msa0437730:intron 20.0%
!!! ATAATAGGTTAGTTATTAGT+TGG - chr3_3:1731489-1731508 None:intergenic 20.0%
!! GAGTTAATGATTGTTAATTA+GGG + chr3_3:1731935-1731954 Msa0437730:intron 20.0%
!! GAAAACAATTAAGTAGAAAT+AGG + chr3_3:1732328-1732347 Msa0437730:intron 20.0%
!! TATTTGCAAAAATATATGCA+CGG + chr3_3:1732478-1732497 Msa0437730:intron 20.0%
!!! TCTAGAAAAGTATTAGATTA+GGG - chr3_3:1732667-1732686 None:intergenic 20.0%
!!! TTCTAGAAAAGTATTAGATT+AGG - chr3_3:1732668-1732687 None:intergenic 20.0%
!! GAAAATTTGGATCATTAATA+TGG + chr3_3:1732936-1732955 Msa0437730:intron 20.0%
!!! ATTTTTACAGTTTTAACGGT+TGG + chr3_3:1730694-1730713 Msa0437730:five_prime_UTR 25.0%
! AACAACAAATTTCATTTCCA+TGG + chr3_3:1730774-1730793 Msa0437730:exon 25.0%
! TTTCATTCTCTCTAATTTAC+TGG + chr3_3:1731860-1731879 Msa0437730:intron 25.0%
! CGAGTTAATGATTGTTAATT+AGG + chr3_3:1731934-1731953 Msa0437730:intron 25.0%
!!! ACTTATAGATTTGGGTTTTA+TGG - chr3_3:1732051-1732070 None:intergenic 25.0%
! AGAAGTAAATAACAGTGAAA+AGG - chr3_3:1732089-1732108 None:intergenic 25.0%
! AGATTCATGATAAAGGAAAA+TGG - chr3_3:1732114-1732133 None:intergenic 25.0%
! AACAAACAGATTCATGATAA+AGG - chr3_3:1732121-1732140 None:intergenic 25.0%
! ATTAATATGGCTTTCTTTCA+TGG + chr3_3:1732949-1732968 Msa0437730:intron 25.0%
!! ATACTTTTACTGTCAACAAA+CGG - chr3_3:1733201-1733220 None:intergenic 25.0%
! TGATGAACAGCAAATAAATA+TGG - chr3_3:1733680-1733699 None:intergenic 25.0%
!!! AAAGAACTTGTTAAAGTACA+AGG - chr3_3:1733706-1733725 None:intergenic 25.0%
GTTGTTAAACTGTTTGCATT+TGG - chr3_3:1730760-1730779 None:intergenic 30.0%
AAATTTCATTTCCATGGAAG+CGG + chr3_3:1730780-1730799 Msa0437730:exon 30.0%
ATAATTAAATGAGAACCTGC+CGG - chr3_3:1731100-1731119 None:intergenic 30.0%
!!! GCTTTTTCAATAGACTATCT+AGG + chr3_3:1731121-1731140 Msa0437730:intron 30.0%
CTACTTAAAACTGTTTGCAT+TGG - chr3_3:1731230-1731249 None:intergenic 30.0%
!!! CAATGCAAACAGTTTTAAGT+AGG + chr3_3:1731228-1731247 Msa0437730:intron 30.0%
GTAGGTTCTACATATATTCT+TGG + chr3_3:1731246-1731265 Msa0437730:intron 30.0%
AGTGTCTATAAATAGAGTTG+AGG - chr3_3:1731447-1731466 None:intergenic 30.0%
ATGTAATCAATCACAAGTGT+AGG - chr3_3:1731603-1731622 None:intergenic 30.0%
ACTTCATATGAGACAAACAT+TGG - chr3_3:1731662-1731681 None:intergenic 30.0%
AATGTCTTATCTATCTAGTG+TGG + chr3_3:1731901-1731920 Msa0437730:intron 30.0%
! ATTGGCTGTCACTAATATTT+TGG + chr3_3:1732007-1732026 Msa0437730:CDS 30.0%
AAAACCCAAATCTATAAGTG+TGG + chr3_3:1732052-1732071 Msa0437730:CDS 30.0%
CTTACCACACTTATAGATTT+GGG - chr3_3:1732059-1732078 None:intergenic 30.0%
AATAACAGTGAAAAGGAATG+AGG - chr3_3:1732082-1732101 None:intergenic 30.0%
AGATCCAATCACATCTAATT+AGG + chr3_3:1732426-1732445 Msa0437730:intron 30.0%
ACATCCTAATTAGATGTGAT+TGG - chr3_3:1732433-1732452 None:intergenic 30.0%
! AGATTTCCTGTTTTCACTTT+TGG - chr3_3:1732642-1732661 None:intergenic 30.0%
! ATCGTTAAGTCAGCTTATTT+TGG - chr3_3:1732715-1732734 None:intergenic 30.0%
GACAAAAACAAGCCTATTAT+CGG - chr3_3:1732739-1732758 None:intergenic 30.0%
! TACTTTTACTGTCAACAAAC+GGG - chr3_3:1733200-1733219 None:intergenic 30.0%
CGTAAACAATAACAAGTGAT+CGG - chr3_3:1733277-1733296 None:intergenic 30.0%
AGCAATTGCATTCTTCAATT+TGG + chr3_3:1733299-1733318 Msa0437730:CDS 30.0%
TGATCCTTGCATCAATTTAT+CGG - chr3_3:1733375-1733394 None:intergenic 30.0%
TTGTGATGAATGACTCATAT+TGG - chr3_3:1733452-1733471 None:intergenic 30.0%
!! TCATGTGGTACTTTTTATTG+AGG + chr3_3:1733492-1733511 Msa0437730:intron 30.0%
CCAATTTATCTCTTTATCCT+GGG + chr3_3:1733576-1733595 Msa0437730:CDS 30.0%
!!! GTTTGACTCTGAAATGTTTT+TGG - chr3_3:1733882-1733901 None:intergenic 30.0%
AGAGTCAAACATTATCACAA+TGG + chr3_3:1733892-1733911 Msa0437730:CDS 30.0%
!! TTGCATTTGGTTTCCGTTTT+TGG - chr3_3:1730747-1730766 None:intergenic 35.0%
AATTTCATTTCCATGGAAGC+GGG + chr3_3:1730781-1730800 Msa0437730:exon 35.0%
AAGAATGTGAGTTTGAGTGT+GGG - chr3_3:1730836-1730855 None:intergenic 35.0%
TAAGAATGTGAGTTTGAGTG+TGG - chr3_3:1730837-1730856 None:intergenic 35.0%
!! AAAAGTGTGAACGCTGTTTT+TGG - chr3_3:1730886-1730905 None:intergenic 35.0%
CTTTCTCTCAACTTTATCCA+TGG - chr3_3:1731357-1731376 None:intergenic 35.0%
! GGTTAGTTATTAGTTGGTGT+TGG - chr3_3:1731483-1731502 None:intergenic 35.0%
ATTGTCTCAAATTGAAGCTG+TGG + chr3_3:1731701-1731720 Msa0437730:intron 35.0%
TCTCATAACAATGTCTGACA+CGG - chr3_3:1731812-1731831 None:intergenic 35.0%
!! AGACCTCTTAACTTTAGGAT+TGG + chr3_3:1731989-1732008 Msa0437730:CDS 35.0%
GCTTACCACACTTATAGATT+TGG - chr3_3:1732060-1732079 None:intergenic 35.0%
GTGTAACCAAAAGTGAAAAC+AGG + chr3_3:1732633-1732652 Msa0437730:intron 35.0%
!!! TAATAGGCTTGTTTTTGTCC+AGG + chr3_3:1732740-1732759 Msa0437730:intron 35.0%
! GTACAGAACAAGAAAGTACA+TGG - chr3_3:1732895-1732914 None:intergenic 35.0%
ACATTATGCGCAGTAAAAAG+AGG + chr3_3:1732998-1733017 Msa0437730:intron 35.0%
CATTATGCGCAGTAAAAAGA+GGG + chr3_3:1732999-1733018 Msa0437730:intron 35.0%
GTAAAAAGAGGGATAAGTTG+TGG + chr3_3:1733010-1733029 Msa0437730:intron 35.0%
! GTCAAGATTAGCCAGTAATA+TGG + chr3_3:1733146-1733165 Msa0437730:intron 35.0%
AGCAATAGCTTCCATATTAC+TGG - chr3_3:1733160-1733179 None:intergenic 35.0%
! TATTAACTTTTATCAGGGCG+TGG + chr3_3:1733225-1733244 Msa0437730:intron 35.0%
! ATTAACTTTTATCAGGGCGT+GGG + chr3_3:1733226-1733245 Msa0437730:intron 35.0%
ATGCAAGGATCAGTATATCA+GGG + chr3_3:1733383-1733402 Msa0437730:CDS 35.0%
! TATCAGGGTGTTATGAAATC+TGG + chr3_3:1733398-1733417 Msa0437730:CDS 35.0%
TACATGTTCAGAGAGTTACT+TGG + chr3_3:1733553-1733572 Msa0437730:intron 35.0%
GCCAATTTATCTCTTTATCC+TGG + chr3_3:1733575-1733594 Msa0437730:CDS 35.0%
CCCAGGATAAAGAGATAAAT+TGG - chr3_3:1733579-1733598 None:intergenic 35.0%
TGAGTATTTGAAGGCAGAAA+TGG - chr3_3:1733614-1733633 None:intergenic 35.0%
ATTTCTGCCTTCAAATACTC+AGG + chr3_3:1733613-1733632 Msa0437730:CDS 35.0%
TGTCACAATGCTTCTAATCT+TGG + chr3_3:1733777-1733796 Msa0437730:intron 35.0%
CAAAATGTTGAGAGAAATCC+AGG - chr3_3:1733807-1733826 None:intergenic 35.0%
! GGATTTCTCTCAACATTTTG+TGG + chr3_3:1733807-1733826 Msa0437730:intron 35.0%
ATCAGCCTCATCTCCAAAAA+CGG + chr3_3:1730731-1730750 Msa0437730:five_prime_UTR 40.0%
AGAATGTGAGTTTGAGTGTG+GGG - chr3_3:1730835-1730854 None:intergenic 40.0%
!!! GTTTTGAAGTGCGATTCGAA+AGG - chr3_3:1730864-1730883 None:intergenic 40.0%
TCAGGTAGAAAATCGCGTTT+GGG - chr3_3:1730961-1730980 None:intergenic 40.0%
ATCAGGTAGAAAATCGCGTT+TGG - chr3_3:1730962-1730981 None:intergenic 40.0%
! AACGCGATTTTCTACCTGAT+TGG + chr3_3:1730962-1730981 Msa0437730:CDS 40.0%
! ACGCGATTTTCTACCTGATT+GGG + chr3_3:1730963-1730982 Msa0437730:CDS 40.0%
GATGGTTCGATTGAAGAGTA+CGG - chr3_3:1731052-1731071 None:intergenic 40.0%
ATTACATGTCGGAGTCATGT+CGG - chr3_3:1731313-1731332 None:intergenic 40.0%
GTTATGAAACATGGCATCCA+TGG + chr3_3:1731337-1731356 Msa0437730:intron 40.0%
CTCAAATTGAAGCTGTGGTT+AGG + chr3_3:1731706-1731725 Msa0437730:intron 40.0%
TTGAAGCTGTGGTTAGGTAT+TGG + chr3_3:1731712-1731731 Msa0437730:intron 40.0%
TGAAGCTGTGGTTAGGTATT+GGG + chr3_3:1731713-1731732 Msa0437730:intron 40.0%
ACGTCTTCGATCTCAAGTAT+CGG - chr3_3:1731769-1731788 None:intergenic 40.0%
CAGCCAATCCTAAAGTTAAG+AGG - chr3_3:1731995-1732014 None:intergenic 40.0%
!!! GCTGTCACTAATATTTTGGC+TGG + chr3_3:1732011-1732030 Msa0437730:CDS 40.0%
! GTTTTATGGAAAGCCAAACG+AGG - chr3_3:1732037-1732056 None:intergenic 40.0%
TATGCACGGCGAGATATAAT+TGG + chr3_3:1732492-1732511 Msa0437730:intron 40.0%
GACTTAACGATGCCGATAAT+AGG + chr3_3:1732724-1732743 Msa0437730:intron 40.0%
! TTTTGTCCAGGTAAATCCTC+AGG + chr3_3:1732752-1732771 Msa0437730:intron 40.0%
TTTGTCCAGGTAAATCCTCA+GGG + chr3_3:1732753-1732772 Msa0437730:intron 40.0%
! TGTCCACTTGTTAGCTTACT+TGG + chr3_3:1732849-1732868 Msa0437730:intron 40.0%
ATGCCAAGTAAGCTAACAAG+TGG - chr3_3:1732855-1732874 None:intergenic 40.0%
! ACAAGAAAGTACATGGCCAA+GGG - chr3_3:1732888-1732907 None:intergenic 40.0%
! AACAAGAAAGTACATGGCCA+AGG - chr3_3:1732889-1732908 None:intergenic 40.0%
GACACCGATAAATTGATGCA+AGG + chr3_3:1733368-1733387 Msa0437730:CDS 40.0%
GATGCAAGGATCAGTATATC+AGG + chr3_3:1733382-1733401 Msa0437730:CDS 40.0%
CGCAATACCTGAGTATTTGA+AGG - chr3_3:1733623-1733642 None:intergenic 40.0%
!! GGTTTCCGTTTTTGGAGATG+AGG - chr3_3:1730739-1730758 None:intergenic 45.0%
GAATGTGAGTTTGAGTGTGG+GGG - chr3_3:1730834-1730853 None:intergenic 45.0%
! AAAATCGCGTTTGGGGTTTG+GGG - chr3_3:1730953-1730972 None:intergenic 45.0%
! GAAAATCGCGTTTGGGGTTT+GGG - chr3_3:1730954-1730973 None:intergenic 45.0%
! AGAAAATCGCGTTTGGGGTT+TGG - chr3_3:1730955-1730974 None:intergenic 45.0%
CAGGTAGAAAATCGCGTTTG+GGG - chr3_3:1730960-1730979 None:intergenic 45.0%
!!! TCGTTTTGAGAGACCCAATC+AGG - chr3_3:1730979-1730998 None:intergenic 45.0%
AAACGGCACCAACGTAGATT+GGG - chr3_3:1731020-1731039 None:intergenic 45.0%
TAAACGGCACCAACGTAGAT+TGG - chr3_3:1731021-1731040 None:intergenic 45.0%
GAGTACGGCGAAGAGATAAA+CGG - chr3_3:1731037-1731056 None:intergenic 45.0%
CTCTTCAATCGAACCATCTC+CGG + chr3_3:1731054-1731073 Msa0437730:CDS 45.0%
CACGACACAAATACTGACAC+TGG - chr3_3:1731539-1731558 None:intergenic 45.0%
!! CACAAGTGTAGGTGTTGAGT+TGG - chr3_3:1731592-1731611 None:intergenic 45.0%
ACTTGAGATCGAAGACGTGT+TGG + chr3_3:1731771-1731790 Msa0437730:intron 45.0%
CTTGAGATCGAAGACGTGTT+GGG + chr3_3:1731772-1731791 Msa0437730:intron 45.0%
CGAGCAGACCTCTTAACTTT+AGG + chr3_3:1731984-1732003 Msa0437730:CDS 45.0%
!!! ATATTTTGGCTGGCCTCGTT+TGG + chr3_3:1732021-1732040 Msa0437730:CDS 45.0%
! CTTAGTTGTGTCGATGCCTT+TGG + chr3_3:1732162-1732181 Msa0437730:intron 45.0%
TTCTTGCATTCAACTCCCTG+AGG - chr3_3:1732771-1732790 None:intergenic 45.0%
AAAGTACATGGCCAAGGGAT+GGG - chr3_3:1732883-1732902 None:intergenic 45.0%
AAGAGGGATAAGTTGTGGCT+TGG + chr3_3:1733015-1733034 Msa0437730:intron 45.0%
AATAACAAGTGATCGGCAGC+AGG - chr3_3:1733270-1733289 None:intergenic 45.0%
TTTGCTGCAGAATCTTCTCC+TGG + chr3_3:1733323-1733342 Msa0437730:CDS 45.0%
TTGCTGCAGAATCTTCTCCT+GGG + chr3_3:1733324-1733343 Msa0437730:CDS 45.0%
GCTACTATAGTGCACTCATG+TGG + chr3_3:1733477-1733496 Msa0437730:intron 45.0%
GCTTCTAATCTTGGAAGTCC+TGG + chr3_3:1733786-1733805 Msa0437730:intron 45.0%
AGATCCTTCTAGACGTGTCA+GGG + chr3_3:1733837-1733856 Msa0437730:intron 45.0%
!! CAGAAGTGTCGATGCTACAG+AGG - chr3_3:1731275-1731294 None:intergenic 50.0%
CAATGTCTGACACGGATACG+TGG - chr3_3:1731804-1731823 None:intergenic 50.0%
CCAAACACAGAGCAAGCCAA+AGG - chr3_3:1732181-1732200 None:intergenic 50.0%
!! CCTTTGGCTTGCTCTGTGTT+TGG + chr3_3:1732178-1732197 Msa0437730:intron 50.0%
CAACTCCCTGAGGATTTACC+TGG - chr3_3:1732761-1732780 None:intergenic 50.0%
TCTCCCTGACGTTGCACTTA+CGG + chr3_3:1732803-1732822 Msa0437730:CDS 50.0%
! TGGCATTTTTCCCCATCCCT+TGG + chr3_3:1732869-1732888 Msa0437730:intron 50.0%
AAGTACATGGCCAAGGGATG+GGG - chr3_3:1732882-1732901 None:intergenic 50.0%
! GAAAGTACATGGCCAAGGGA+TGG - chr3_3:1732884-1732903 None:intergenic 50.0%
! AGGGATAAGTTGTGGCTTGG+AGG + chr3_3:1733018-1733037 Msa0437730:intron 50.0%
GCAGAATCTTCTCCTGGGAA+TGG + chr3_3:1733329-1733348 Msa0437730:CDS 50.0%
CAGATCCTTCTAGACGTGTC+AGG + chr3_3:1733836-1733855 Msa0437730:intron 50.0%
AAAGCCCTGACACGTCTAGA+AGG - chr3_3:1733844-1733863 None:intergenic 50.0%
GCACCAACGTAGATTGGGAG+GGG - chr3_3:1731015-1731034 None:intergenic 55.0%
GGCACCAACGTAGATTGGGA+GGG - chr3_3:1731016-1731035 None:intergenic 55.0%
GCTCCGTAAGTGCAACGTCA+GGG - chr3_3:1732809-1732828 None:intergenic 55.0%
AGCTCCGTAAGTGCAACGTC+AGG - chr3_3:1732810-1732829 None:intergenic 55.0%
TTGCACTTACGGAGCTGCTC+TGG + chr3_3:1732814-1732833 Msa0437730:CDS 55.0%
ATCTTCTCCTGGGAATGGCG+AGG + chr3_3:1733334-1733353 Msa0437730:CDS 55.0%
GAATGGCGAGGCTGTAAGTG+TGG + chr3_3:1733346-1733365 Msa0437730:CDS 55.0%
AATGGCAGCTCAGACTTCCC+AGG - chr3_3:1733596-1733615 None:intergenic 55.0%
ACGTGTCAGGGCTTTCTGCA+AGG + chr3_3:1733849-1733868 Msa0437730:CDS 55.0%
TGTCAGGGCTTTCTGCAAGG+AGG + chr3_3:1733852-1733871 Msa0437730:CDS 55.0%
GGGGGAGAGTGAAGTGGACA+CGG - chr3_3:1730816-1730835 None:intergenic 60.0%
GAGTGTGGGGGAGAGTGAAG+TGG - chr3_3:1730822-1730841 None:intergenic 60.0%
! CGCGTTTGGGGTTTGGGGTT+CGG - chr3_3:1730948-1730967 None:intergenic 60.0%
CGACCCCTCCCAATCTACGT+TGG + chr3_3:1731009-1731028 Msa0437730:CDS 60.0%
CGGCACCAACGTAGATTGGG+AGG - chr3_3:1731017-1731036 None:intergenic 60.0%
CTTACAGCCTCGCCATTCCC+AGG - chr3_3:1733344-1733363 None:intergenic 60.0%
GAGCGCAGTTCCCGCTTCCA+TGG - chr3_3:1730794-1730813 None:intergenic 65.0%
GACGGGAGCAATGCCGGAGA+TGG - chr3_3:1731070-1731089 None:intergenic 65.0%
GTCAGCGACGGGAGCAATGC+CGG - chr3_3:1731076-1731095 None:intergenic 65.0%
ATTGCTCCCGTCGCTGACGC+CGG + chr3_3:1731078-1731097 Msa0437730:CDS 65.0%
AACCTGCCGGCGTCAGCGAC+GGG - chr3_3:1731087-1731106 None:intergenic 70.0%
GAACCTGCCGGCGTCAGCGA+CGG - chr3_3:1731088-1731107 None:intergenic 70.0%
! CTCCCGTCGCTGACGCCGGC+AGG + chr3_3:1731082-1731101 Msa0437730:CDS 80.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 1730654 1733925 1730654 ID=Msa0437730;Name=Msa0437730
chr3_3 mRNA 1730654 1733925 1730654 ID=Msa0437730-mRNA-1;Parent=Msa0437730;Name=Msa0437730-mRNA-1;_AED=0.16;_eAED=0.16;_QI=139|0.8|0.66|1|1|1|6|0|275
chr3_3 exon 1730654 1731103 1730654 ID=Msa0437730-mRNA-1:exon:278;Parent=Msa0437730-mRNA-1
chr3_3 exon 1731974 1732073 1731974 ID=Msa0437730-mRNA-1:exon:279;Parent=Msa0437730-mRNA-1
chr3_3 exon 1732762 1732835 1732762 ID=Msa0437730-mRNA-1:exon:280;Parent=Msa0437730-mRNA-1
chr3_3 exon 1733241 1733425 1733241 ID=Msa0437730-mRNA-1:exon:281;Parent=Msa0437730-mRNA-1
chr3_3 exon 1733564 1733634 1733564 ID=Msa0437730-mRNA-1:exon:282;Parent=Msa0437730-mRNA-1
chr3_3 exon 1733839 1733925 1733839 ID=Msa0437730-mRNA-1:exon:283;Parent=Msa0437730-mRNA-1
chr3_3 five_prime_UTR 1730654 1730792 1730654 ID=Msa0437730-mRNA-1:five_prime_utr;Parent=Msa0437730-mRNA-1
chr3_3 CDS 1730793 1731103 1730793 ID=Msa0437730-mRNA-1:cds;Parent=Msa0437730-mRNA-1
chr3_3 CDS 1731974 1732073 1731974 ID=Msa0437730-mRNA-1:cds;Parent=Msa0437730-mRNA-1
chr3_3 CDS 1732762 1732835 1732762 ID=Msa0437730-mRNA-1:cds;Parent=Msa0437730-mRNA-1
chr3_3 CDS 1733241 1733425 1733241 ID=Msa0437730-mRNA-1:cds;Parent=Msa0437730-mRNA-1
chr3_3 CDS 1733564 1733634 1733564 ID=Msa0437730-mRNA-1:cds;Parent=Msa0437730-mRNA-1
chr3_3 CDS 1733839 1733925 1733839 ID=Msa0437730-mRNA-1:cds;Parent=Msa0437730-mRNA-1
Gene Sequence

>Msa0437730

ATGGAAGCGGGAACTGCGCTCCGTGTCCACTTCACTCTCCCCCACACTCAAACTCACATTCTTAGTTTCCTTTCGAATCGCACTTCAAAACCAAAAACAGCGTTCACACTTTTTTCTTCATCTTCTTCTAATTCTTCTGCTGTTCATAGTTTCCGAACCCCAAACCCCAAACGCGATTTTCTACCTGATTGGGTCTCTCAAAACGACGACGTTGTTCGACCCCTCCCAATCTACGTTGGTGCCGTTTATCTCTTCGCCGTACTCTTCAATCGAACCATCTCCGGCATTGCTCCCGTCGCTGACGCCGGCAGTTCTCAATCGCGAGCAGACCTCTTAACTTTAGGATTGGCTGTCACTAATATTTTGGCTGGCCTCGTTTGGCTTTCCATAAAACCCAAATCTATAAGTGTGGTAAATCCTCAGGGAGTTGAATGCAAGAAGCTGTGCACTGCTCTCCCTGACGTTGCACTTACGGAGCTGCTCTGGGCGTGGGAATCTCTGTCAGATGTCACCTGCTGCCGATCACTTGTTATTGTTTACGAGAGCAATTGCATTCTTCAATTTGGTTTTGCTGCAGAATCTTCTCCTGGGAATGGCGAGGCTGTAAGTGTGGACACCGATAAATTGATGCAAGGATCAGTATATCAGGGTGTTATGAAATCTGGAACTCAGAGTTACTTGGCCAATTTATCTCTTTATCCTGGGAAGTCTGAGCTGCCATTTCTGCCTTCAAATACTCAGATCCTTCTAGACGTGTCAGGGCTTTCTGCAAGGAGGAAGACCAAAAACATTTCAGAGTCAAACATTATCACAATGGCCCCAAAATAG

Protein sequence

>Msa0437730

MEAGTALRVHFTLPHTQTHILSFLSNRTSKPKTAFTLFSSSSSNSSAVHSFRTPNPKRDFLPDWVSQNDDVVRPLPIYVGAVYLFAVLFNRTISGIAPVADAGSSQSRADLLTLGLAVTNILAGLVWLSIKPKSISVVNPQGVECKKLCTALPDVALTELLWAWESLSDVTCCRSLVIVYESNCILQFGFAAESSPGNGEAVSVDTDKLMQGSVYQGVMKSGTQSYLANLSLYPGKSELPFLPSNTQILLDVSGLSARRKTKNISESNIITMAPK*