AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0265520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0265520 MtrunA17_Chr2g0330351 65.116 86 7 1 1 86 1 63 1.75e-23 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 149 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTATTGAACTTTGGGAATT+TGG 0.122868 2_2:-65861544 Msa0265520:five_prime_UTR
AATTCAGTTGTTTGGGAATT+TGG 0.146474 2_2:-65861295 Msa0265520:five_prime_UTR
TAATATGATGGACTGGTCTT+AGG 0.173203 2_2:-65858274 Msa0265520:three_prime_UTR
GGCTTTCTTTCTTGAGGGTT+TGG 0.237746 2_2:-65861031 Msa0265520:five_prime_UTR
TTGTTAGGACTTAGAATAAA+AGG 0.266188 2_2:-65858389 Msa0265520:three_prime_UTR
TCAAAAGCAATTCAGTTGTT+TGG 0.281031 2_2:-65861303 Msa0265520:five_prime_UTR
GTATTGAACTTTGGGAATTT+GGG 0.281740 2_2:-65861543 Msa0265520:five_prime_UTR
CAAAAGCAATTCAGTTGTTT+GGG 0.286910 2_2:-65861302 Msa0265520:five_prime_UTR
CTACAAGAAGACAAGAAAAT+TGG 0.287221 2_2:-65860671 Msa0265520:five_prime_UTR
CTTATGCGTCTTTCTAAGTT+TGG 0.288933 2_2:-65860613 Msa0265520:five_prime_UTR
GATGTAAATGTTGATATTAT+TGG 0.293583 2_2:-65861570 Msa0265520:five_prime_UTR
ACCTAACAGAGAGGGCTTAC+AGG 0.302124 2_2:-65860381 Msa0265520:five_prime_UTR
CTAGAATATGTATGAATGTT+AGG 0.304013 2_2:+65860850 None:intergenic
CAGCCAGCCTTCAGCTTTGA+AGG 0.314078 2_2:+65858556 None:intergenic
GTATAACTGTTGAGTTTGTT+AGG 0.326958 2_2:-65858337 Msa0265520:three_prime_UTR
ATTTCAGTTGTTAGACCTAT+AGG 0.327510 2_2:-65858302 Msa0265520:three_prime_UTR
ATCAAGAACAGACCCGTTCT+TGG 0.335859 2_2:-65858674 Msa0265520:CDS
GCTTTCTTTCTTGAGGGTTT+GGG 0.336829 2_2:-65861030 Msa0265520:five_prime_UTR
ATTGGTAAAGTATTGAACTT+TGG 0.339456 2_2:-65861552 Msa0265520:five_prime_UTR
AAGTGCATCGGCCACTTTCC+TGG 0.348306 2_2:+65860804 None:intergenic
TGTTGGTGGTTGGTCTAAGT+TGG 0.348737 2_2:-65861127 Msa0265520:five_prime_UTR
TTGGTAAAGTATTGAACTTT+GGG 0.351996 2_2:-65861551 Msa0265520:five_prime_UTR
CAAGGAGTTGTGCCTCCTAC+TGG 0.379823 2_2:-65860757 Msa0265520:five_prime_UTR
TGAGAAAGTTATGAAGGAAA+TGG 0.381737 2_2:-65861088 Msa0265520:five_prime_UTR
GGGTGTATGAAGTATTATAA+TGG 0.383102 2_2:-65860895 Msa0265520:five_prime_UTR
TTAGAATAAAAGGAGTTTGT+TGG 0.386247 2_2:-65858379 Msa0265520:three_prime_UTR
CACGGATCCAATAGGGTTGC+TGG 0.387111 2_2:-65858617 Msa0265520:exon
GCCTGTAAGCCCTCTCTGTT+AGG 0.390509 2_2:+65860380 None:intergenic
ATTGAAACCGTAACAGATCT+TGG 0.395436 2_2:-65858753 Msa0265520:CDS
AATATGATGGACTGGTCTTA+GGG 0.395801 2_2:-65858273 Msa0265520:three_prime_UTR
GTGGTTGGTCTAAGTTGGGT+AGG 0.398659 2_2:-65861122 Msa0265520:five_prime_UTR
TCATGTCGGTGCTGCAGCTT+CGG 0.402601 2_2:-65861205 Msa0265520:five_prime_UTR
TTTGGGAATTTGGATGATCT+CGG 0.403976 2_2:-65861285 Msa0265520:five_prime_UTR
GTGAAGGGAGAGTGCTCCCT+TGG 0.412376 2_2:-65858197 Msa0265520:three_prime_UTR
TATTGGATCCGTGCCTTTGA+AGG 0.413281 2_2:+65858627 None:intergenic
ATACCACGTAGTTTATCTTC+AGG 0.413531 2_2:+65861654 None:intergenic
CATCATATTAATAATCCTAT+AGG 0.413541 2_2:+65858287 None:intergenic
TCAGAATCCAAATCCGTTGA+TGG 0.418697 2_2:-65861687 Msa0265520:five_prime_UTR
TGGAGGAGGCTTTGCGCAAA+GGG 0.420469 2_2:-65860459 Msa0265520:five_prime_UTR
GCTACTTCCTCGCAACATTA+CGG 0.425177 2_2:-65860213 Msa0265520:CDS
CATGTCAGAAATCTTGCTTA+TGG 0.429523 2_2:+65858800 None:intergenic
TACGATGGCTTTCTTTCTTG+AGG 0.430319 2_2:-65861037 Msa0265520:five_prime_UTR
GTGTCGTTCTTCTTGACTGC+TGG 0.433510 2_2:+65858729 None:intergenic
GTTGGTGGTTGGTCTAAGTT+GGG 0.435610 2_2:-65861126 Msa0265520:five_prime_UTR
ACGATGGCTTTCTTTCTTGA+GGG 0.438697 2_2:-65861036 Msa0265520:five_prime_UTR
TGGTTACCATGTCATTGTTA+AGG 0.441998 2_2:-65861454 Msa0265520:five_prime_UTR
CAAGTTGTCCTATGTTGTAA+AGG 0.442451 2_2:+65860500 None:intergenic
TTCAAAGGCACGGATCCAAT+AGG 0.446448 2_2:-65858625 Msa0265520:exon
TGAAGGGAGAGTGCTCCCTT+GGG 0.459913 2_2:-65858196 Msa0265520:three_prime_UTR
CATGTCATTGTTAAGGCACT+AGG 0.463730 2_2:-65861447 Msa0265520:five_prime_UTR
CTTTCTAAGTTTGGTAAATG+TGG 0.463945 2_2:-65860604 Msa0265520:five_prime_UTR
CTTGAGGGTTTGGGTAGAGC+AGG 0.464422 2_2:-65861021 Msa0265520:five_prime_UTR
TGCTGGTCCAAGATCTGTTA+CGG 0.465574 2_2:+65858746 None:intergenic
GTAAGAGCCAGCAACCCTAT+TGG 0.469564 2_2:+65858610 None:intergenic
TTGCATGGTATCCATCTTGT+TGG 0.471260 2_2:+65858827 None:intergenic
AGAAGTTATTGGCGCGATAA+CGG 0.471453 2_2:-65860316 Msa0265520:five_prime_UTR
TTGTTGGAATTAGAGTTAAG+AGG 0.474337 2_2:-65858363 Msa0265520:three_prime_UTR
GGTGTATGAAGTATTATAAT+GGG 0.480051 2_2:-65860894 Msa0265520:five_prime_UTR
CTTGCTTATGGAAGCTTGCA+TGG 0.483544 2_2:+65858812 None:intergenic
CCAGATATGTGAAAATCAAA+TGG 0.484805 2_2:+65860242 None:intergenic
TCAAAGGCACGGATCCAATA+GGG 0.491538 2_2:-65858624 Msa0265520:exon
GACACATATAATGTTGTTGT+TGG 0.491842 2_2:-65861144 Msa0265520:five_prime_UTR
TGAGATTGAGAAAGTTATGA+AGG 0.500325 2_2:-65861094 Msa0265520:five_prime_UTR
TGATGTTTGATGAGATGTTA+AGG 0.501851 2_2:-65860780 Msa0265520:five_prime_UTR
TTAGATGAGATGAGATTGAA+TGG 0.502582 2_2:-65861390 Msa0265520:five_prime_UTR
TGCTGTTCTTGTCATGGAGG+AGG 0.503656 2_2:-65860473 Msa0265520:five_prime_UTR
TACCACGTAGTTTATCTTCA+GGG 0.505363 2_2:+65861655 None:intergenic
ATTGGAGTGTAAGATATCAA+TGG 0.505389 2_2:-65860653 Msa0265520:five_prime_UTR
TTAAACAACCAATGGTGCCT+AGG 0.506080 2_2:-65861485 Msa0265520:five_prime_UTR
AAGCTGAAGGCTGGCTGACG+CGG 0.506384 2_2:-65858550 Msa0265520:three_prime_UTR
AACATTGTTAAGTGTATGGC+AGG 0.509537 2_2:-65860581 Msa0265520:five_prime_UTR
TGGTTGGTCTAAGTTGGGTA+GGG 0.510976 2_2:-65861121 Msa0265520:five_prime_UTR
CTATAGGATTATTAATATGA+TGG 0.511207 2_2:-65858286 Msa0265520:three_prime_UTR
GTTATTGGCGCGATAACGGT+TGG 0.512953 2_2:-65860312 Msa0265520:five_prime_UTR
TTCTCATGATTTCAATACGA+TGG 0.514643 2_2:-65861052 Msa0265520:five_prime_UTR
ATCAAACAGTTATGCAGCTA+TGG 0.515720 2_2:-65860718 Msa0265520:five_prime_UTR
TGAAAATGCTGTTCTTGTCA+TGG 0.518590 2_2:-65860479 Msa0265520:five_prime_UTR
GTGGAACATTGTTAAGTGTA+TGG 0.518991 2_2:-65860585 Msa0265520:five_prime_UTR
CCAACATCCCTAGGCACCAT+TGG 0.519127 2_2:+65861477 None:intergenic
CAGAATCCAAATCCGTTGAT+GGG 0.520509 2_2:-65861686 Msa0265520:five_prime_UTR
TTTACTGTATACAAGCCTGC+TGG 0.521200 2_2:+65860429 None:intergenic
ACATATAATGTTGTTGTTGG+TGG 0.521286 2_2:-65861141 Msa0265520:five_prime_UTR
TAGATCATCATAGCTGCATA+TGG 0.521595 2_2:+65860691 None:intergenic
TCAAAACAATCTTGTCCTCA+AGG 0.523083 2_2:+65858423 None:intergenic
TTGGGAATTTGGATGATCTC+GGG 0.529597 2_2:-65861284 Msa0265520:five_prime_UTR
CTTTGTCAACGTTGTCATGT+CGG 0.530379 2_2:-65861219 Msa0265520:five_prime_UTR
ATGAAGGAAATGGAAGTTGA+GGG 0.533124 2_2:-65861078 Msa0265520:five_prime_UTR
TAGAATGAATGAGGCTGTTG+AGG 0.536115 2_2:-65860998 Msa0265520:five_prime_UTR
ATTTACATCAATACACACAT+TGG 0.538909 2_2:+65861584 None:intergenic
GCAAAGGGTTCTGTCCCAGC+AGG 0.539699 2_2:-65860444 Msa0265520:five_prime_UTR
ATGACAGGATTCCAACAAGA+TGG 0.546276 2_2:-65858838 Msa0265520:intron
GGATTCTGATTGTGATTCTG+AGG 0.547566 2_2:+65861701 None:intergenic
ATGGAGGAGGCTTTGCGCAA+AGG 0.548012 2_2:-65860460 Msa0265520:five_prime_UTR
ATAATGTTGTTGTTGGTGGT+TGG 0.548071 2_2:-65861137 Msa0265520:five_prime_UTR
TTACTGTATACAAGCCTGCT+GGG 0.548303 2_2:+65860430 None:intergenic
AAGGAGTTGTGCCTCCTACT+GGG 0.549624 2_2:-65860756 Msa0265520:five_prime_UTR
GAACCTTCAAAGCTGAAGGC+TGG 0.549697 2_2:-65858559 Msa0265520:three_prime_UTR
TTGTTAAGGCACTAGGAAGA+AGG 0.550536 2_2:-65861440 Msa0265520:five_prime_UTR
GGATCCGTGCCTTTGAAGGT+AGG 0.550575 2_2:+65858631 None:intergenic
GGATTATTAATATGATGGAC+TGG 0.557080 2_2:-65858281 Msa0265520:three_prime_UTR
GCTGCATAACTGTTTGATGA+AGG 0.559887 2_2:+65860723 None:intergenic
CTTGGGGTAACTTGAATGCA+AGG 0.565587 2_2:-65858179 Msa0265520:three_prime_UTR
TTGGGCACTTAAACAACCAA+TGG 0.565969 2_2:-65861493 Msa0265520:five_prime_UTR
TAAACAACCAATGGTGCCTA+GGG 0.567048 2_2:-65861484 Msa0265520:five_prime_UTR
GAATTTGGGTGGTGAAGCAA+TGG 0.570595 2_2:-65861529 Msa0265520:five_prime_UTR
TACACCTACCTTCAAAGGCA+CGG 0.576905 2_2:-65858635 Msa0265520:CDS
GTTTACGAGTACATCATAAG+TGG 0.577031 2_2:-65860523 Msa0265520:five_prime_UTR
ATCAAACATCAAAAGTGCAT+CGG 0.579682 2_2:+65860792 None:intergenic
TGCTTCAAACCTAACAGAGA+GGG 0.579793 2_2:-65860389 Msa0265520:five_prime_UTR
GATGGACTGGTCTTAGGGGA+GGG 0.579930 2_2:-65858268 Msa0265520:three_prime_UTR
AGTCGAACCTTCAAAGCTGA+AGG 0.580363 2_2:-65858563 Msa0265520:three_prime_UTR
TATGAAGGAAATGGAAGTTG+AGG 0.581993 2_2:-65861079 Msa0265520:five_prime_UTR
CTGAAGGCTGGCTGACGCGG+AGG 0.582125 2_2:-65858547 Msa0265520:three_prime_UTR
ATGCTCTCGTGATCTAGTGA+AGG 0.585391 2_2:-65858213 Msa0265520:three_prime_UTR
ATAAGTGGCCTTTACAACAT+AGG 0.587644 2_2:-65860508 Msa0265520:five_prime_UTR
TGGTAACCACCAACATCCCT+AGG 0.588370 2_2:+65861468 None:intergenic
CGACATGACAACGTTGACAA+AGG 0.590619 2_2:+65861220 None:intergenic
TAGAGCAGGTAGAATGAATG+AGG 0.597801 2_2:-65861007 Msa0265520:five_prime_UTR
TTTAGTAGATTGCAACCTTG+AGG 0.598397 2_2:-65858438 Msa0265520:three_prime_UTR
CCAATGGTGCCTAGGGATGT+TGG 0.599310 2_2:-65861477 Msa0265520:five_prime_UTR
GCATAACTGTTTGATGAAGG+AGG 0.603385 2_2:+65860726 None:intergenic
GGCAGGAGATGCAAGAATGT+GGG 0.604659 2_2:-65860564 Msa0265520:five_prime_UTR
GAGGTTATAGTCCCAGTAGG+AGG 0.607543 2_2:+65860745 None:intergenic
TGAAGGAAATGGAAGTTGAG+GGG 0.610461 2_2:-65861077 Msa0265520:five_prime_UTR
CTAGTGCCTTAACAATGACA+TGG 0.611916 2_2:+65861448 None:intergenic
ATCATCATAGCTGCATATGG+TGG 0.614246 2_2:+65860694 None:intergenic
ACCACGTAGTTTATCTTCAG+GGG 0.614563 2_2:+65861656 None:intergenic
TTTGATGAGATGTTAAGGCA+AGG 0.615366 2_2:-65860775 Msa0265520:five_prime_UTR
TGATGGACTGGTCTTAGGGG+AGG 0.617319 2_2:-65858269 Msa0265520:three_prime_UTR
TGCTCTCGTGATCTAGTGAA+GGG 0.619024 2_2:-65858212 Msa0265520:three_prime_UTR
CTTGCATTCAAGTTACCCCA+AGG 0.620413 2_2:+65858180 None:intergenic
GAACGACACACTTACAAACT+CGG 0.620791 2_2:-65858715 Msa0265520:CDS
ATGGACTGGTCTTAGGGGAG+GGG 0.630319 2_2:-65858267 Msa0265520:three_prime_UTR
AAGGAGGTTATAGTCCCAGT+AGG 0.631328 2_2:+65860742 None:intergenic
ATATGATGGACTGGTCTTAG+GGG 0.633170 2_2:-65858272 Msa0265520:three_prime_UTR
TGGCAGGAGATGCAAGAATG+TGG 0.637681 2_2:-65860565 Msa0265520:five_prime_UTR
CAAAAGCACATTCAAAGCGT+CGG 0.642730 2_2:+65861248 None:intergenic
GGAAAAGAAGAAATCACAGG+TGG 0.644080 2_2:-65858489 Msa0265520:three_prime_UTR
TTGAACTTTGGGAATTTGGG+TGG 0.644522 2_2:-65861540 Msa0265520:five_prime_UTR
GAATTAGAGCAAGCTGACGA+CGG 0.651021 2_2:-65858510 Msa0265520:three_prime_UTR
GACGGAAAAGAAGAAATCAC+AGG 0.663512 2_2:-65858492 Msa0265520:three_prime_UTR
GAAGGGAGAGTGCTCCCTTG+GGG 0.664460 2_2:-65858195 Msa0265520:three_prime_UTR
TTGCATTCAAGTTACCCCAA+GGG 0.672485 2_2:+65858181 None:intergenic
GAAAAGAAGAAATCACAGGT+GGG 0.672572 2_2:-65858488 Msa0265520:three_prime_UTR
ACTAGATCCGTAATGTTGCG+AGG 0.681910 2_2:+65860206 None:intergenic
ATGGTGCCTAGGGATGTTGG+TGG 0.687772 2_2:-65861474 Msa0265520:five_prime_UTR
TTGCTTCAAACCTAACAGAG+AGG 0.703672 2_2:-65860390 Msa0265520:five_prime_UTR
AAATGCTGTTCTTGTCATGG+AGG 0.741667 2_2:-65860476 Msa0265520:five_prime_UTR
TCCCCTGAAGATAAACTACG+TGG 0.767720 2_2:-65861657 Msa0265520:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGGTTATGTTTTTTAATT+GGG - chr2_2:65858345-65858364 Msa0265520:three_prime_UTR 15.0%
!!! ATTTTTAATTTCATTTCGAT+TGG - chr2_2:65858928-65858947 Msa0265520:intron 15.0%
!! TAATTAAATAGTCAATAAAC+TGG + chr2_2:65860657-65860676 None:intergenic 15.0%
!! AAAATTAATTTAAATGAGCA+AGG + chr2_2:65860847-65860866 None:intergenic 15.0%
!! TATCTTTCTTCAAAAACTAA+AGG - chr2_2:65858222-65858241 Msa0265520:three_prime_UTR 20.0%
!! ATCTTTCTTCAAAAACTAAA+GGG - chr2_2:65858223-65858242 Msa0265520:three_prime_UTR 20.0%
!! GATGTAAATGTTGATATTAT+TGG - chr2_2:65858286-65858305 Msa0265520:three_prime_UTR 20.0%
!!! CAATGGTTATGTTTTTTAAT+TGG - chr2_2:65858344-65858363 Msa0265520:three_prime_UTR 20.0%
!!! ATTTTTCATTTTTATGATGC+AGG - chr2_2:65858441-65858460 Msa0265520:three_prime_UTR 20.0%
!! TAGTTAAAAAATTCAGTGTA+AGG + chr2_2:65859680-65859699 None:intergenic 20.0%
!!! TTTTTAATATAGCTGTCTTT+TGG - chr2_2:65859768-65859787 Msa0265520:intron 20.0%
!!! TTTTAATATAGCTGTCTTTT+GGG - chr2_2:65859769-65859788 Msa0265520:intron 20.0%
!! GCATTAAAGAATATTTACAA+AGG + chr2_2:65860012-65860031 None:intergenic 20.0%
!! ATCATCACTATTAAATAACT+TGG - chr2_2:65860253-65860272 Msa0265520:exon 20.0%
!! ATGCAGATAATAGATATTTA+TGG + chr2_2:65860552-65860571 None:intergenic 20.0%
!!! TCATACTGACTATAATTAAT+TGG - chr2_2:65860716-65860735 Msa0265520:five_prime_UTR 20.0%
!!! ATAATTCATTTGAAACAGAA+TGG - chr2_2:65860974-65860993 Msa0265520:five_prime_UTR 20.0%
!! CATCATATTAATAATCCTAT+AGG + chr2_2:65861572-65861591 None:intergenic 20.0%
!! CTATAGGATTATTAATATGA+TGG - chr2_2:65861570-65861589 Msa0265520:five_prime_UTR 20.0%
! ATTTACATCAATACACACAT+TGG + chr2_2:65858275-65858294 None:intergenic 25.0%
!!! ATTGGTAAAGTATTGAACTT+TGG - chr2_2:65858304-65858323 Msa0265520:three_prime_UTR 25.0%
!!! TTGGTAAAGTATTGAACTTT+GGG - chr2_2:65858305-65858324 Msa0265520:three_prime_UTR 25.0%
!!! TCGGTTTTTAATTCAATGAA+AGG - chr2_2:65858670-65858689 Msa0265520:CDS 25.0%
!!! CGGTTTTTAATTCAATGAAA+GGG - chr2_2:65858671-65858690 Msa0265520:CDS 25.0%
!!! TTTTAATTCAATGAAAGGGA+AGG - chr2_2:65858675-65858694 Msa0265520:CDS 25.0%
!! GGTGTATGAAGTATTATAAT+GGG - chr2_2:65858962-65858981 Msa0265520:intron 25.0%
! CTAGAATATGTATGAATGTT+AGG + chr2_2:65859009-65859028 None:intergenic 25.0%
! AAGGAACGGTAAATAATTTA+AGG + chr2_2:65859712-65859731 None:intergenic 25.0%
! TAAATGTTATAGTGTAGTCT+TGG - chr2_2:65859796-65859815 Msa0265520:intron 25.0%
! TAATTGTATCCATACGAAAT+TGG - chr2_2:65859838-65859857 Msa0265520:intron 25.0%
!! ACGTATTTCTATTTGCAATA+TGG - chr2_2:65859863-65859882 Msa0265520:intron 25.0%
!! CGTATTTCTATTTGCAATAT+GGG - chr2_2:65859864-65859883 Msa0265520:intron 25.0%
!! AGCTAGTAGAAATTTAAAGT+TGG - chr2_2:65860049-65860068 Msa0265520:intron 25.0%
!!! ATTTAAAGTTGGTTTTTCTG+TGG - chr2_2:65860060-65860079 Msa0265520:intron 25.0%
!! GAACTTAACTTTTGTTGAAT+AGG - chr2_2:65860140-65860159 Msa0265520:intron 25.0%
!! TTAACTTTTGTTGAATAGGT+AGG - chr2_2:65860144-65860163 Msa0265520:intron 25.0%
!!! ACTATTAAATAACTTGGTGT+TGG - chr2_2:65860259-65860278 Msa0265520:exon 25.0%
! TTTCAACTTTCAATAAACAG+GGG + chr2_2:65860401-65860420 None:intergenic 25.0%
! GTTTCAACTTTCAATAAACA+GGG + chr2_2:65860402-65860421 None:intergenic 25.0%
! TGTTTCAACTTTCAATAAAC+AGG + chr2_2:65860403-65860422 None:intergenic 25.0%
! TATTGAAAGTTGAAACACAT+AGG - chr2_2:65860406-65860425 Msa0265520:five_prime_UTR 25.0%
! ATAGTCAATAAACTGGAAAA+GGG + chr2_2:65860650-65860669 None:intergenic 25.0%
! AATAGTCAATAAACTGGAAA+AGG + chr2_2:65860651-65860670 None:intergenic 25.0%
! TTATAGTCAGTATGACATAT+TGG + chr2_2:65860711-65860730 None:intergenic 25.0%
!!! GAGTTTGTTTAATTTTTTGC+TGG - chr2_2:65860803-65860822 Msa0265520:five_prime_UTR 25.0%
! TTGTTAGGACTTAGAATAAA+AGG - chr2_2:65861467-65861486 Msa0265520:five_prime_UTR 25.0%
! TTAGAATAAAAGGAGTTTGT+TGG - chr2_2:65861477-65861496 Msa0265520:five_prime_UTR 25.0%
TCTTCAAAAACTAAAGGGTA+AGG - chr2_2:65858228-65858247 Msa0265520:three_prime_UTR 30.0%
! AGTATTGAACTTTGGGAATT+TGG - chr2_2:65858312-65858331 Msa0265520:three_prime_UTR 30.0%
! GTATTGAACTTTGGGAATTT+GGG - chr2_2:65858313-65858332 Msa0265520:three_prime_UTR 30.0%
TTAGATGAGATGAGATTGAA+TGG - chr2_2:65858466-65858485 Msa0265520:three_prime_UTR 30.0%
!!! ATTGATAGTTTTGTCAATGC+CGG - chr2_2:65858523-65858542 Msa0265520:three_prime_UTR 30.0%
TCAAAAGCAATTCAGTTGTT+TGG - chr2_2:65858553-65858572 Msa0265520:three_prime_UTR 30.0%
CAAAAGCAATTCAGTTGTTT+GGG - chr2_2:65858554-65858573 Msa0265520:three_prime_UTR 30.0%
AATTCAGTTGTTTGGGAATT+TGG - chr2_2:65858561-65858580 Msa0265520:three_prime_UTR 30.0%
GACACATATAATGTTGTTGT+TGG - chr2_2:65858712-65858731 Msa0265520:CDS 30.0%
! ACATATAATGTTGTTGTTGG+TGG - chr2_2:65858715-65858734 Msa0265520:CDS 30.0%
TGAGATTGAGAAAGTTATGA+AGG - chr2_2:65858762-65858781 Msa0265520:CDS 30.0%
TGAGAAAGTTATGAAGGAAA+TGG - chr2_2:65858768-65858787 Msa0265520:CDS 30.0%
TTCTCATGATTTCAATACGA+TGG - chr2_2:65858804-65858823 Msa0265520:CDS 30.0%
! ATTTCGATTGGAGATTTTGA+TGG - chr2_2:65858940-65858959 Msa0265520:intron 30.0%
!! TTTCGATTGGAGATTTTGAT+GGG - chr2_2:65858941-65858960 Msa0265520:intron 30.0%
! GGGTGTATGAAGTATTATAA+TGG - chr2_2:65858961-65858980 Msa0265520:intron 30.0%
! ATCAAACATCAAAAGTGCAT+CGG + chr2_2:65859067-65859086 None:intergenic 30.0%
TGATGTTTGATGAGATGTTA+AGG - chr2_2:65859076-65859095 Msa0265520:intron 30.0%
CTACAAGAAGACAAGAAAAT+TGG - chr2_2:65859185-65859204 Msa0265520:intron 30.0%
ATTGGAGTGTAAGATATCAA+TGG - chr2_2:65859203-65859222 Msa0265520:intron 30.0%
CTTTCTAAGTTTGGTAAATG+TGG - chr2_2:65859252-65859271 Msa0265520:intron 30.0%
TAAAAAACGCGAGAAGTTAT+TGG - chr2_2:65859529-65859548 Msa0265520:intron 30.0%
CCAGATATGTGAAAATCAAA+TGG + chr2_2:65859617-65859636 None:intergenic 30.0%
!! CCATTTGATTTTCACATATC+TGG - chr2_2:65859614-65859633 Msa0265520:intron 30.0%
!! ATTTTCACATATCTGGTCTT+TGG - chr2_2:65859621-65859640 Msa0265520:intron 30.0%
TCGTAAATCTAGAAAAGGAA+CGG + chr2_2:65859726-65859745 None:intergenic 30.0%
CCAAATCGTAAATCTAGAAA+AGG + chr2_2:65859731-65859750 None:intergenic 30.0%
! CCTTTTCTAGATTTACGATT+TGG - chr2_2:65859728-65859747 Msa0265520:intron 30.0%
AATACGTTACCAATTTCGTA+TGG + chr2_2:65859850-65859869 None:intergenic 30.0%
GCAACATAAACTTATTACAG+AGG - chr2_2:65859919-65859938 Msa0265520:intron 30.0%
! CTTCATTAACCAAAGTACTT+TGG - chr2_2:65859968-65859987 Msa0265520:intron 30.0%
! GAAAAATAGCCAAAGTACTT+TGG + chr2_2:65859980-65859999 None:intergenic 30.0%
! ATATTTACAAAGGCATGACT+TGG + chr2_2:65860002-65860021 None:intergenic 30.0%
TTCTGCTATCTTCTTTGTAA+AGG - chr2_2:65860228-65860247 Msa0265520:CDS 30.0%
! TGGTGTTGGATAACTTTATT+CGG - chr2_2:65860273-65860292 Msa0265520:five_prime_UTR 30.0%
GGTCCATTATGTTAATGTAA+AGG - chr2_2:65860303-65860322 Msa0265520:five_prime_UTR 30.0%
GCACCTTTACATTAACATAA+TGG + chr2_2:65860309-65860328 None:intergenic 30.0%
! TTCCTATCTTTTTACACTTC+CGG - chr2_2:65860345-65860364 Msa0265520:five_prime_UTR 30.0%
TCCTATAATCCTATAACAGA+CGG + chr2_2:65860450-65860469 None:intergenic 30.0%
!!! GTTTTGAGACAGTGATTTTT+TGG - chr2_2:65860506-65860525 Msa0265520:five_prime_UTR 30.0%
ATCTATTATCTGCATATGCA+TGG - chr2_2:65860557-65860576 Msa0265520:five_prime_UTR 30.0%
GCATATTACTGGATTTCAAA+TGG - chr2_2:65860585-65860604 Msa0265520:five_prime_UTR 30.0%
! ATTTTAGGCAAATTCATGAC+AGG - chr2_2:65861003-65861022 Msa0265520:five_prime_UTR 30.0%
TTGTTGGAATTAGAGTTAAG+AGG - chr2_2:65861493-65861512 Msa0265520:five_prime_UTR 30.0%
! GTATAACTGTTGAGTTTGTT+AGG - chr2_2:65861519-65861538 Msa0265520:five_prime_UTR 30.0%
ATTTCAGTTGTTAGACCTAT+AGG - chr2_2:65861554-65861573 Msa0265520:five_prime_UTR 30.0%
!! GGATTATTAATATGATGGAC+TGG - chr2_2:65861575-65861594 Msa0265520:five_prime_UTR 30.0%
TACCACGTAGTTTATCTTCA+GGG + chr2_2:65858204-65858223 None:intergenic 35.0%
ATACCACGTAGTTTATCTTC+AGG + chr2_2:65858205-65858224 None:intergenic 35.0%
TGGTTACCATGTCATTGTTA+AGG - chr2_2:65858402-65858421 Msa0265520:three_prime_UTR 35.0%
!! AATTGCTTTTGACACATGAC+CGG + chr2_2:65858545-65858564 None:intergenic 35.0%
TTTGGGAATTTGGATGATCT+CGG - chr2_2:65858571-65858590 Msa0265520:three_prime_UTR 35.0%
!! ATAATGTTGTTGTTGGTGGT+TGG - chr2_2:65858719-65858738 Msa0265520:CDS 35.0%
TATGAAGGAAATGGAAGTTG+AGG - chr2_2:65858777-65858796 Msa0265520:CDS 35.0%
ATGAAGGAAATGGAAGTTGA+GGG - chr2_2:65858778-65858797 Msa0265520:CDS 35.0%
!! GAATGATTACTGCTTTTCTC+AGG - chr2_2:65859028-65859047 Msa0265520:intron 35.0%
TTTGATGAGATGTTAAGGCA+AGG - chr2_2:65859081-65859100 Msa0265520:intron 35.0%
ATCAAACAGTTATGCAGCTA+TGG - chr2_2:65859138-65859157 Msa0265520:intron 35.0%
TAGATCATCATAGCTGCATA+TGG + chr2_2:65859168-65859187 None:intergenic 35.0%
CTTATGCGTCTTTCTAAGTT+TGG - chr2_2:65859243-65859262 Msa0265520:intron 35.0%
GTGGAACATTGTTAAGTGTA+TGG - chr2_2:65859271-65859290 Msa0265520:intron 35.0%
AACATTGTTAAGTGTATGGC+AGG - chr2_2:65859275-65859294 Msa0265520:intron 35.0%
GTTTACGAGTACATCATAAG+TGG - chr2_2:65859333-65859352 Msa0265520:intron 35.0%
ATAAGTGGCCTTTACAACAT+AGG - chr2_2:65859348-65859367 Msa0265520:intron 35.0%
CAAGTTGTCCTATGTTGTAA+AGG + chr2_2:65859359-65859378 None:intergenic 35.0%
TGAAAATGCTGTTCTTGTCA+TGG - chr2_2:65859377-65859396 Msa0265520:intron 35.0%
!!! TTCTCGCGTTTTTTAGTGAA+CGG + chr2_2:65859524-65859543 None:intergenic 35.0%
! TTTTGAGCAGACATCATAAC+TGG - chr2_2:65859570-65859589 Msa0265520:intron 35.0%
ATGAAGTCATGTGACATTTG+CGG + chr2_2:65859954-65859973 None:intergenic 35.0%
TAGCTTCTTGTAGCTAAGAA+AGG + chr2_2:65860034-65860053 None:intergenic 35.0%
!!! GTTGGTTTTTCTGTGGATTT+AGG - chr2_2:65860067-65860086 Msa0265520:intron 35.0%
! GTTTTTCTGTGGATTTAGGA+AGG - chr2_2:65860071-65860090 Msa0265520:intron 35.0%
TAGGAAAAGAAACACAGAAG+TGG + chr2_2:65860331-65860350 None:intergenic 35.0%
! TCCTATCTTTTTACACTTCC+GGG - chr2_2:65860346-65860365 Msa0265520:five_prime_UTR 35.0%
CAGAAAGATAATAACTAGCC+CGG + chr2_2:65860367-65860386 None:intergenic 35.0%
!! GGGCTAGTTATTATCTTTCT+GGG - chr2_2:65860366-65860385 Msa0265520:five_prime_UTR 35.0%
GAAAGTTGAAACACATAGGT+AGG - chr2_2:65860410-65860429 Msa0265520:five_prime_UTR 35.0%
ACCGTCTGTTATAGGATTAT+AGG - chr2_2:65860446-65860465 Msa0265520:five_prime_UTR 35.0%
GCATGGTATTTGCATATTAC+TGG - chr2_2:65860574-65860593 Msa0265520:five_prime_UTR 35.0%
ATTTCAAATGGAGTCCCTTA+GGG - chr2_2:65860597-65860616 Msa0265520:five_prime_UTR 35.0%
!!! AATTTTTTGCTGGTGTGTTG+AGG - chr2_2:65860813-65860832 Msa0265520:five_prime_UTR 35.0%
! ACAGAATGGCAGCTAATTTT+AGG - chr2_2:65860988-65861007 Msa0265520:five_prime_UTR 35.0%
CATGTCAGAAATCTTGCTTA+TGG + chr2_2:65861059-65861078 None:intergenic 35.0%
ATTGAAACCGTAACAGATCT+TGG - chr2_2:65861103-65861122 Msa0265520:five_prime_UTR 35.0%
GAAAAGAAGAAATCACAGGT+GGG - chr2_2:65861368-65861387 Msa0265520:five_prime_UTR 35.0%
TTTAGTAGATTGCAACCTTG+AGG - chr2_2:65861418-65861437 Msa0265520:five_prime_UTR 35.0%
TCAAAACAATCTTGTCCTCA+AGG + chr2_2:65861436-65861455 None:intergenic 35.0%
!! TTGAGGACAAGATTGTTTTG+AGG - chr2_2:65861435-65861454 Msa0265520:five_prime_UTR 35.0%
!! TAATATGATGGACTGGTCTT+AGG - chr2_2:65861582-65861601 Msa0265520:five_prime_UTR 35.0%
!! AATATGATGGACTGGTCTTA+GGG - chr2_2:65861583-65861602 Msa0265520:five_prime_UTR 35.0%
TCAGAATCCAAATCCGTTGA+TGG - chr2_2:65858169-65858188 Msa0265520:three_prime_UTR 40.0%
CAGAATCCAAATCCGTTGAT+GGG - chr2_2:65858170-65858189 Msa0265520:three_prime_UTR 40.0%
! CAAAAACCCATCAACGGATT+TGG + chr2_2:65858179-65858198 None:intergenic 40.0%
ACCACGTAGTTTATCTTCAG+GGG + chr2_2:65858203-65858222 None:intergenic 40.0%
! TTGAACTTTGGGAATTTGGG+TGG - chr2_2:65858316-65858335 Msa0265520:three_prime_UTR 40.0%
TTGGGCACTTAAACAACCAA+TGG - chr2_2:65858363-65858382 Msa0265520:three_prime_UTR 40.0%
TTAAACAACCAATGGTGCCT+AGG - chr2_2:65858371-65858390 Msa0265520:three_prime_UTR 40.0%
TAAACAACCAATGGTGCCTA+GGG - chr2_2:65858372-65858391 Msa0265520:three_prime_UTR 40.0%
CTAGTGCCTTAACAATGACA+TGG + chr2_2:65858411-65858430 None:intergenic 40.0%
! CATGTCATTGTTAAGGCACT+AGG - chr2_2:65858409-65858428 Msa0265520:three_prime_UTR 40.0%
! TTGTTAAGGCACTAGGAAGA+AGG - chr2_2:65858416-65858435 Msa0265520:three_prime_UTR 40.0%
TTGGGAATTTGGATGATCTC+GGG - chr2_2:65858572-65858591 Msa0265520:three_prime_UTR 40.0%
! CAAAAGCACATTCAAAGCGT+CGG + chr2_2:65858611-65858630 None:intergenic 40.0%
CTTTGTCAACGTTGTCATGT+CGG - chr2_2:65858637-65858656 Msa0265520:CDS 40.0%
TGAAGGAAATGGAAGTTGAG+GGG - chr2_2:65858779-65858798 Msa0265520:CDS 40.0%
TACGATGGCTTTCTTTCTTG+AGG - chr2_2:65858819-65858838 Msa0265520:CDS 40.0%
ACGATGGCTTTCTTTCTTGA+GGG - chr2_2:65858820-65858839 Msa0265520:CDS 40.0%
GCTTTCTTTCTTGAGGGTTT+GGG - chr2_2:65858826-65858845 Msa0265520:CDS 40.0%
TAGAGCAGGTAGAATGAATG+AGG - chr2_2:65858849-65858868 Msa0265520:intron 40.0%
TAGAATGAATGAGGCTGTTG+AGG - chr2_2:65858858-65858877 Msa0265520:intron 40.0%
! AATGAGGCTGTTGAGGTTTT+CGG - chr2_2:65858865-65858884 Msa0265520:intron 40.0%
! TGAGGTTTTCGGTAGTATGA+AGG - chr2_2:65858876-65858895 Msa0265520:intron 40.0%
GCATAACTGTTTGATGAAGG+AGG + chr2_2:65859133-65859152 None:intergenic 40.0%
GCTGCATAACTGTTTGATGA+AGG + chr2_2:65859136-65859155 None:intergenic 40.0%
ATCATCATAGCTGCATATGG+TGG + chr2_2:65859165-65859184 None:intergenic 40.0%
AAATGCTGTTCTTGTCATGG+AGG - chr2_2:65859380-65859399 Msa0265520:intron 40.0%
TTACTGTATACAAGCCTGCT+GGG + chr2_2:65859429-65859448 None:intergenic 40.0%
TTTACTGTATACAAGCCTGC+TGG + chr2_2:65859430-65859449 None:intergenic 40.0%
TTGCTTCAAACCTAACAGAG+AGG - chr2_2:65859466-65859485 Msa0265520:intron 40.0%
TGCTTCAAACCTAACAGAGA+GGG - chr2_2:65859467-65859486 Msa0265520:intron 40.0%
!!! TCTCGCGTTTTTTAGTGAAC+GGG + chr2_2:65859523-65859542 None:intergenic 40.0%
AGAAGTTATTGGCGCGATAA+CGG - chr2_2:65859540-65859559 Msa0265520:intron 40.0%
GCAATATGGGAATCCTTCTT+AGG - chr2_2:65859877-65859896 Msa0265520:intron 40.0%
CTTCTTAGGAGTTAGGACAT+GGG - chr2_2:65859891-65859910 Msa0265520:intron 40.0%
ATAACTTTATTCGGCTGCTG+TGG - chr2_2:65860282-65860301 Msa0265520:five_prime_UTR 40.0%
!! CGGGCTAGTTATTATCTTTC+TGG - chr2_2:65860365-65860384 Msa0265520:five_prime_UTR 40.0%
TATAACAGACGGTACTTCCA+TGG + chr2_2:65860439-65860458 None:intergenic 40.0%
!! ATGGAAGTACCGTCTGTTAT+AGG - chr2_2:65860438-65860457 Msa0265520:five_prime_UTR 40.0%
GATTTCAAATGGAGTCCCTT+AGG - chr2_2:65860596-65860615 Msa0265520:five_prime_UTR 40.0%
ATATATGCCGTGATCCCTAA+GGG + chr2_2:65860614-65860633 None:intergenic 40.0%
!! ATTTAGTGTTGCTTGCTGGT+TGG - chr2_2:65860741-65860760 Msa0265520:five_prime_UTR 40.0%
ATGACAGGATTCCAACAAGA+TGG - chr2_2:65861018-65861037 Msa0265520:five_prime_UTR 40.0%
TTGCATGGTATCCATCTTGT+TGG + chr2_2:65861032-65861051 None:intergenic 40.0%
GAACGACACACTTACAAACT+CGG - chr2_2:65861141-65861160 Msa0265520:five_prime_UTR 40.0%
!!! CAGCTTTTTCATCCAAGAAC+GGG + chr2_2:65861197-65861216 None:intergenic 40.0%
!!! CCAGCTTTTTCATCCAAGAA+CGG + chr2_2:65861198-65861217 None:intergenic 40.0%
! GGTTTTACACCTACCTTCAA+AGG - chr2_2:65861216-65861235 Msa0265520:five_prime_UTR 40.0%
GACGGAAAAGAAGAAATCAC+AGG - chr2_2:65861364-65861383 Msa0265520:five_prime_UTR 40.0%
GGAAAAGAAGAAATCACAGG+TGG - chr2_2:65861367-65861386 Msa0265520:five_prime_UTR 40.0%
!!! AGGACAAGATTGTTTTGAGG+AGG - chr2_2:65861438-65861457 Msa0265520:five_prime_UTR 40.0%
!!! GGACAAGATTGTTTTGAGGA+GGG - chr2_2:65861439-65861458 Msa0265520:five_prime_UTR 40.0%
!!! GACAAGATTGTTTTGAGGAG+GGG - chr2_2:65861440-65861459 Msa0265520:five_prime_UTR 40.0%
!! ATATGATGGACTGGTCTTAG+GGG - chr2_2:65861584-65861603 Msa0265520:five_prime_UTR 40.0%
! TTGCATTCAAGTTACCCCAA+GGG + chr2_2:65861678-65861697 None:intergenic 40.0%
AGGGGACAAAAACCCATCAA+CGG + chr2_2:65858185-65858204 None:intergenic 45.0%
TCCCCTGAAGATAAACTACG+TGG - chr2_2:65858199-65858218 Msa0265520:three_prime_UTR 45.0%
GAATTTGGGTGGTGAAGCAA+TGG - chr2_2:65858327-65858346 Msa0265520:three_prime_UTR 45.0%
CGACATGACAACGTTGACAA+AGG + chr2_2:65858639-65858658 None:intergenic 45.0%
!! TGTTGGTGGTTGGTCTAAGT+TGG - chr2_2:65858729-65858748 Msa0265520:CDS 45.0%
!! GTTGGTGGTTGGTCTAAGTT+GGG - chr2_2:65858730-65858749 Msa0265520:CDS 45.0%
!! TGGTTGGTCTAAGTTGGGTA+GGG - chr2_2:65858735-65858754 Msa0265520:CDS 45.0%
GGCTTTCTTTCTTGAGGGTT+TGG - chr2_2:65858825-65858844 Msa0265520:CDS 45.0%
!! TTACTGCTTTTCTCAGGACC+AGG - chr2_2:65859034-65859053 Msa0265520:intron 45.0%
! TTTTCTCAGGACCAGGAAAG+TGG - chr2_2:65859041-65859060 Msa0265520:intron 45.0%
AAGGAGGTTATAGTCCCAGT+AGG + chr2_2:65859117-65859136 None:intergenic 45.0%
GCTACTTCCTCGCAACATTA+CGG - chr2_2:65859643-65859662 Msa0265520:intron 45.0%
ACTAGATCCGTAATGTTGCG+AGG + chr2_2:65859653-65859672 None:intergenic 45.0%
GGGAATCCTTCTTAGGAGTT+AGG - chr2_2:65859884-65859903 Msa0265520:intron 45.0%
CCATGTCCTAACTCCTAAGA+AGG + chr2_2:65859893-65859912 None:intergenic 45.0%
CCTTCTTAGGAGTTAGGACA+TGG - chr2_2:65859890-65859909 Msa0265520:intron 45.0%
AAGTCATGTGACATTTGCGG+AGG + chr2_2:65859951-65859970 None:intergenic 45.0%
! GCCCGGAAGTGTAAAAAGAT+AGG + chr2_2:65860350-65860369 None:intergenic 45.0%
AACACATAGGTAGGTTGCCA+TGG - chr2_2:65860419-65860438 Msa0265520:five_prime_UTR 45.0%
GATATATGCCGTGATCCCTA+AGG + chr2_2:65860615-65860634 None:intergenic 45.0%
!! TGGAAAAGGGTGTCAAGAAC+AGG + chr2_2:65860637-65860656 None:intergenic 45.0%
!! GGAGATTTAGTGTTGCTTGC+TGG - chr2_2:65860737-65860756 Msa0265520:five_prime_UTR 45.0%
! TTTTGCTGGTGTGTTGAGGA+TGG - chr2_2:65860817-65860836 Msa0265520:five_prime_UTR 45.0%
CTTGCTTATGGAAGCTTGCA+TGG + chr2_2:65861047-65861066 None:intergenic 45.0%
TGCTGGTCCAAGATCTGTTA+CGG + chr2_2:65861113-65861132 None:intergenic 45.0%
ATCAAGAACAGACCCGTTCT+TGG - chr2_2:65861182-65861201 Msa0265520:five_prime_UTR 45.0%
CCGTTCTTGGATGAAAAAGC+TGG - chr2_2:65861195-65861214 Msa0265520:five_prime_UTR 45.0%
TACACCTACCTTCAAAGGCA+CGG - chr2_2:65861221-65861240 Msa0265520:five_prime_UTR 45.0%
TATTGGATCCGTGCCTTTGA+AGG + chr2_2:65861232-65861251 None:intergenic 45.0%
! TTCAAAGGCACGGATCCAAT+AGG - chr2_2:65861231-65861250 Msa0265520:five_prime_UTR 45.0%
! TCAAAGGCACGGATCCAATA+GGG - chr2_2:65861232-65861251 Msa0265520:five_prime_UTR 45.0%
AGTCGAACCTTCAAAGCTGA+AGG - chr2_2:65861293-65861312 Msa0265520:five_prime_UTR 45.0%
GAATTAGAGCAAGCTGACGA+CGG - chr2_2:65861346-65861365 Msa0265520:five_prime_UTR 45.0%
!!! TTGAGGAGGGGTGTTTTGTT+AGG - chr2_2:65861452-65861471 Msa0265520:five_prime_UTR 45.0%
ATGCTCTCGTGATCTAGTGA+AGG - chr2_2:65861643-65861662 Msa0265520:five_prime_UTR 45.0%
TGCTCTCGTGATCTAGTGAA+GGG - chr2_2:65861644-65861663 Msa0265520:five_prime_UTR 45.0%
! CTTGCATTCAAGTTACCCCA+AGG + chr2_2:65861679-65861698 None:intergenic 45.0%
CTTGGGGTAACTTGAATGCA+AGG - chr2_2:65861677-65861696 Msa0265520:five_prime_UTR 45.0%
TGGTAACCACCAACATCCCT+AGG + chr2_2:65858391-65858410 None:intergenic 50.0%
!! GTGGTTGGTCTAAGTTGGGT+AGG - chr2_2:65858734-65858753 Msa0265520:CDS 50.0%
AAGGAGTTGTGCCTCCTACT+GGG - chr2_2:65859100-65859119 Msa0265520:intron 50.0%
GAGGTTATAGTCCCAGTAGG+AGG + chr2_2:65859114-65859133 None:intergenic 50.0%
TGGCAGGAGATGCAAGAATG+TGG - chr2_2:65859291-65859310 Msa0265520:intron 50.0%
GGCAGGAGATGCAAGAATGT+GGG - chr2_2:65859292-65859311 Msa0265520:intron 50.0%
TGCTGTTCTTGTCATGGAGG+AGG - chr2_2:65859383-65859402 Msa0265520:intron 50.0%
ACCTAACAGAGAGGGCTTAC+AGG - chr2_2:65859475-65859494 Msa0265520:intron 50.0%
! GTTATTGGCGCGATAACGGT+TGG - chr2_2:65859544-65859563 Msa0265520:intron 50.0%
CAAGCTGCAACGCGCAATTA+GGG + chr2_2:65860485-65860504 None:intergenic 50.0%
TCAAGCTGCAACGCGCAATT+AGG + chr2_2:65860486-65860505 None:intergenic 50.0%
ATGGAGTCCCTTAGGGATCA+CGG - chr2_2:65860604-65860623 Msa0265520:five_prime_UTR 50.0%
! GTGTCGTTCTTCTTGACTGC+TGG + chr2_2:65861130-65861149 None:intergenic 50.0%
GTAAGAGCCAGCAACCCTAT+TGG + chr2_2:65861249-65861268 None:intergenic 50.0%
GAACCTTCAAAGCTGAAGGC+TGG - chr2_2:65861297-65861316 Msa0265520:five_prime_UTR 50.0%
CCAACATCCCTAGGCACCAT+TGG + chr2_2:65858382-65858401 None:intergenic 55.0%
CCAATGGTGCCTAGGGATGT+TGG - chr2_2:65858379-65858398 Msa0265520:three_prime_UTR 55.0%
ATGGTGCCTAGGGATGTTGG+TGG - chr2_2:65858382-65858401 Msa0265520:three_prime_UTR 55.0%
!! TCATGTCGGTGCTGCAGCTT+CGG - chr2_2:65858651-65858670 Msa0265520:CDS 55.0%
CTTGAGGGTTTGGGTAGAGC+AGG - chr2_2:65858835-65858854 Msa0265520:intron 55.0%
! AAGTGCATCGGCCACTTTCC+TGG + chr2_2:65859055-65859074 None:intergenic 55.0%
CAAGGAGTTGTGCCTCCTAC+TGG - chr2_2:65859099-65859118 Msa0265520:intron 55.0%
ATGGAGGAGGCTTTGCGCAA+AGG - chr2_2:65859396-65859415 Msa0265520:intron 55.0%
TGGAGGAGGCTTTGCGCAAA+GGG - chr2_2:65859397-65859416 Msa0265520:intron 55.0%
GCCTGTAAGCCCTCTCTGTT+AGG + chr2_2:65859479-65859498 None:intergenic 55.0%
! GGATCCGTGCCTTTGAAGGT+AGG + chr2_2:65861228-65861247 None:intergenic 55.0%
CACGGATCCAATAGGGTTGC+TGG - chr2_2:65861239-65861258 Msa0265520:five_prime_UTR 55.0%
! CAGCCAGCCTTCAGCTTTGA+AGG + chr2_2:65861303-65861322 None:intergenic 55.0%
!! TGATGGACTGGTCTTAGGGG+AGG - chr2_2:65861587-65861606 Msa0265520:five_prime_UTR 55.0%
!! GATGGACTGGTCTTAGGGGA+GGG - chr2_2:65861588-65861607 Msa0265520:five_prime_UTR 55.0%
!! ATGGACTGGTCTTAGGGGAG+GGG - chr2_2:65861589-65861608 Msa0265520:five_prime_UTR 55.0%
!! TGAAGGGAGAGTGCTCCCTT+GGG - chr2_2:65861660-65861679 Msa0265520:five_prime_UTR 55.0%
GCAAAGGGTTCTGTCCCAGC+AGG - chr2_2:65859412-65859431 Msa0265520:intron 60.0%
! AAGCTGAAGGCTGGCTGACG+CGG - chr2_2:65861306-65861325 Msa0265520:five_prime_UTR 60.0%
!! GTGAAGGGAGAGTGCTCCCT+TGG - chr2_2:65861659-65861678 Msa0265520:five_prime_UTR 60.0%
!! GAAGGGAGAGTGCTCCCTTG+GGG - chr2_2:65861661-65861680 Msa0265520:five_prime_UTR 60.0%
! CTGAAGGCTGGCTGACGCGG+AGG - chr2_2:65861309-65861328 Msa0265520:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 65858158 65861720 65858158 ID=Msa0265520;Name=Msa0265520
chr2_2 mRNA 65858158 65861720 65858158 ID=Msa0265520-mRNA-1;Parent=Msa0265520;Name=Msa0265520-mRNA-1;_AED=0.04;_eAED=0.04;_QI=1453|1|1|1|0|0.5|2|468|95
chr2_2 exon 65858158 65858853 65858158 ID=Msa0265520-mRNA-1:exon:20785;Parent=Msa0265520-mRNA-1
chr2_2 exon 65860208 65861720 65860208 ID=Msa0265520-mRNA-1:exon:20784;Parent=Msa0265520-mRNA-1
chr2_2 five_prime_UTR 65860268 65861720 65860268 ID=Msa0265520-mRNA-1:five_prime_utr;Parent=Msa0265520-mRNA-1
chr2_2 CDS 65860208 65860267 65860208 ID=Msa0265520-mRNA-1:cds;Parent=Msa0265520-mRNA-1
chr2_2 CDS 65858626 65858853 65858626 ID=Msa0265520-mRNA-1:cds;Parent=Msa0265520-mRNA-1
chr2_2 three_prime_UTR 65858158 65858625 65858158 ID=Msa0265520-mRNA-1:three_prime_utr;Parent=Msa0265520-mRNA-1
Gene Sequence

>Msa0265520

ATGCCATTTGATTTTCACATATCTGGTCTTTGGCTACTTCCTCGCAACATTACGGATCTAGATTCCAACAAGATGGATACCATGCAAGCTTCCATAAGCAAGATTTCTGACATGATCTCAAATCTTCAGCACAAAAACATTGAAACCGTAACAGATCTTGGACCAGCAGTCAAGAAGAACGACACACTTACAAACTCGGATCGAGATTCAGATGATGATCAAGAACAGACCCGTTCTTGGATGAAAAAGCTGGTTTTACACCTACCTTCAAAGGCACGGATCCAATAG
Protein sequence

>Msa0265520

MPFDFHISGLWLLPRNITDLDSNKMDTMQASISKISDMISNLQHKNIETVTDLGPAVKKNDTLTNSDRDSDDDQEQTRSWMKKLVLHLPSKARIQ*