Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003720 | Msa0208220 | 0.801416 | 9.097746e-49 | -8.615850e-47 |
| Msa0011960 | Msa0208220 | 0.846014 | 2.834413e-59 | -8.615850e-47 |
| Msa0013050 | Msa0208220 | -0.806228 | 9.109510e-50 | -8.615850e-47 |
| Msa0023000 | Msa0208220 | 0.807199 | 5.679429e-50 | -8.615850e-47 |
| Msa0027260 | Msa0208220 | 0.808822 | 2.564581e-50 | -8.615850e-47 |
| Msa0027770 | Msa0208220 | 0.805662 | 1.197691e-49 | -8.615850e-47 |
| Msa0028660 | Msa0208220 | 0.804581 | 2.017274e-49 | -8.615850e-47 |
| Msa0032580 | Msa0208220 | 0.833338 | 5.646666e-56 | -8.615850e-47 |
| Msa0033110 | Msa0208220 | 0.805197 | 1.499377e-49 | -8.615850e-47 |
| Msa0033260 | Msa0208220 | 0.801026 | 1.093168e-48 | -8.615850e-47 |
| Msa0058300 | Msa0208220 | 0.826756 | 2.278007e-54 | -8.615850e-47 |
| Msa0061080 | Msa0208220 | 0.810451 | 1.145019e-50 | -8.615850e-47 |
| Msa0075500 | Msa0208220 | 0.809694 | 1.666765e-50 | -8.615850e-47 |
| Msa0078900 | Msa0208220 | 0.820028 | 8.515718e-53 | -8.615850e-47 |
| Msa0090360 | Msa0208220 | 0.806431 | 8.253957e-50 | -8.615850e-47 |
| Msa0091410 | Msa0208220 | 0.800537 | 1.375513e-48 | -8.615850e-47 |
| Msa0100740 | Msa0208220 | 0.808173 | 3.526857e-50 | -8.615850e-47 |
| Msa0105620 | Msa0208220 | 0.840598 | 7.894662e-58 | -8.615850e-47 |
| Msa0112770 | Msa0208220 | 0.815874 | 7.393577e-52 | -8.615850e-47 |
| Msa0115270 | Msa0208220 | 0.811501 | 6.782679e-51 | -8.615850e-47 |
| Msa0115390 | Msa0208220 | 0.800557 | 1.362914e-48 | -8.615850e-47 |
| Msa0126610 | Msa0208220 | 0.810223 | 1.282345e-50 | -8.615850e-47 |
| Msa0135380 | Msa0208220 | 0.805183 | 1.509556e-49 | -8.615850e-47 |
| Msa0136070 | Msa0208220 | 0.800504 | 1.397044e-48 | -8.615850e-47 |
| Msa0137840 | Msa0208220 | 0.804885 | 1.742820e-49 | -8.615850e-47 |
| Msa0142980 | Msa0208220 | 0.821683 | 3.544713e-53 | -8.615850e-47 |
| Msa0145730 | Msa0208220 | 0.818801 | 1.621916e-52 | -8.615850e-47 |
| Msa0150820 | Msa0208220 | 0.822131 | 2.791257e-53 | -8.615850e-47 |
| Msa0160550 | Msa0208220 | 0.839614 | 1.425763e-57 | -8.615850e-47 |
| Msa0168230 | Msa0208220 | 0.808979 | 2.372758e-50 | -8.615850e-47 |
| Msa0169280 | Msa0208220 | 0.800662 | 1.297400e-48 | -8.615850e-47 |
| Msa0171540 | Msa0208220 | 0.836518 | 8.928039e-57 | -8.615850e-47 |
| Msa0172970 | Msa0208220 | 0.835086 | 2.059467e-56 | -8.615850e-47 |
| Msa0184040 | Msa0208220 | 0.806521 | 7.902738e-50 | -8.615850e-47 |
| Msa0187120 | Msa0208220 | 0.848339 | 6.527069e-60 | -8.615850e-47 |
| Msa0189300 | Msa0208220 | 0.801747 | 7.782126e-49 | -8.615850e-47 |
| Msa0189520 | Msa0208220 | 0.805888 | 1.073929e-49 | -8.615850e-47 |
| Msa0194480 | Msa0208220 | 0.813545 | 2.425033e-51 | -8.615850e-47 |
| Msa0208220 | Msa0208270 | 0.860536 | 1.929647e-63 | -8.615850e-47 |
| Msa0208220 | Msa0208340 | 0.815694 | 8.108694e-52 | -8.615850e-47 |
| Msa0208220 | Msa0208350 | 0.966342 | 8.573269e-126 | -8.615850e-47 |
| Msa0208220 | Msa0241470 | 0.806580 | 7.675793e-50 | -8.615850e-47 |
| Msa0208220 | Msa0253200 | 0.805321 | 1.412675e-49 | -8.615850e-47 |
| Msa0208220 | Msa0262310 | 0.814889 | 1.224184e-51 | -8.615850e-47 |
| Msa0208220 | Msa0262340 | 0.815201 | 1.043865e-51 | -8.615850e-47 |
| Msa0208220 | Msa0265520 | 0.803783 | 2.956989e-49 | -8.615850e-47 |
| Msa0208220 | Msa0271360 | 0.801255 | 9.813054e-49 | -8.615850e-47 |
| Msa0208220 | Msa0271530 | 0.819558 | 1.090329e-52 | -8.615850e-47 |
| Msa0208220 | Msa0279220 | 0.809940 | 1.476161e-50 | -8.615850e-47 |
| Msa0208220 | Msa0289250 | 0.809141 | 2.190561e-50 | -8.615850e-47 |
| Msa0208220 | Msa0292030 | 0.806938 | 6.450076e-50 | -8.615850e-47 |
| Msa0208220 | Msa0295540 | 0.803862 | 2.846819e-49 | -8.615850e-47 |
| Msa0208220 | Msa0298700 | 0.808823 | 2.562276e-50 | -8.615850e-47 |
| Msa0208220 | Msa0300120 | 0.800265 | 1.563037e-48 | -8.615850e-47 |
| Msa0208220 | Msa0306710 | 0.810550 | 1.090474e-50 | -8.615850e-47 |
| Msa0208220 | Msa0309750 | 0.808327 | 3.270398e-50 | -8.615850e-47 |
| Msa0208220 | Msa0309770 | 0.806345 | 8.606930e-50 | -8.615850e-47 |
| Msa0208220 | Msa0318980 | 0.800779 | 1.227701e-48 | -8.615850e-47 |
| Msa0208220 | Msa0321310 | 0.801089 | 1.061256e-48 | -8.615850e-47 |
| Msa0208220 | Msa0330310 | 0.803238 | 3.835184e-49 | -8.615850e-47 |
| Msa0208220 | Msa0336420 | 0.802714 | 4.921148e-49 | -8.615850e-47 |
| Msa0208220 | Msa0337620 | 0.824876 | 6.366052e-54 | -8.615850e-47 |
| Msa0208220 | Msa0344540 | 0.808992 | 2.357883e-50 | -8.615850e-47 |
| Msa0208220 | Msa0351990 | 0.807877 | 4.078152e-50 | -8.615850e-47 |
| Msa0208220 | Msa0369220 | 0.804464 | 2.132863e-49 | -8.615850e-47 |
| Msa0208220 | Msa0372340 | 0.817277 | 3.584591e-52 | -8.615850e-47 |
| Msa0208220 | Msa0376300 | 0.801559 | 8.504616e-49 | -8.615850e-47 |
| Msa0208220 | Msa0383500 | 0.818066 | 2.379449e-52 | -8.615850e-47 |
| Msa0208220 | Msa0385580 | 0.833149 | 6.296241e-56 | -8.615850e-47 |
| Msa0208220 | Msa0387750 | 0.805523 | 1.281095e-49 | -8.615850e-47 |
| Msa0208220 | Msa0388700 | 0.824408 | 8.203114e-54 | -8.615850e-47 |
| Msa0208220 | Msa0398950 | 0.811735 | 6.034982e-51 | -8.615850e-47 |
| Msa0208220 | Msa0402790 | 0.816140 | 6.447769e-52 | -8.615850e-47 |
| Msa0208220 | Msa0412840 | 0.800347 | 1.504320e-48 | -8.615850e-47 |
| Msa0208220 | Msa0446580 | 0.802315 | 5.948131e-49 | -8.615850e-47 |
| Msa0208220 | Msa0457510 | 0.804797 | 1.817811e-49 | -8.615850e-47 |
| Msa0208220 | Msa0458060 | 0.802255 | 6.118936e-49 | -8.615850e-47 |
| Msa0208220 | Msa0473830 | -0.805401 | 1.358930e-49 | -8.615850e-47 |
| Msa0208220 | Msa0481530 | 0.815409 | 9.382084e-52 | -8.615850e-47 |
| Msa0208220 | Msa0493410 | 0.816295 | 5.951919e-52 | -8.615850e-47 |
| Msa0208220 | Msa0518070 | -0.800752 | 1.243787e-48 | -8.615850e-47 |
| Msa0208220 | Msa0529040 | 0.803443 | 3.477020e-49 | -8.615850e-47 |
| Msa0208220 | Msa0529890 | 0.803820 | 2.904344e-49 | -8.615850e-47 |
| Msa0208220 | Msa0541360 | 0.805503 | 1.293543e-49 | -8.615850e-47 |
| Msa0208220 | Msa0542090 | 0.812266 | 4.621706e-51 | -8.615850e-47 |
| Msa0208220 | Msa0542130 | 0.811843 | 5.716347e-51 | -8.615850e-47 |
| Msa0208220 | Msa0545080 | 0.808210 | 3.464462e-50 | -8.615850e-47 |
| Msa0208220 | Msa0555450 | 0.817699 | 2.879624e-52 | -8.615850e-47 |
| Msa0208220 | Msa0556060 | 0.808761 | 2.642477e-50 | -8.615850e-47 |
| Msa0208220 | Msa0562440 | 0.800749 | 1.245637e-48 | -8.615850e-47 |
| Msa0208220 | Msa0585560 | 0.813175 | 2.924058e-51 | -8.615850e-47 |
| Msa0208220 | Msa0610430 | 0.843589 | 1.276521e-58 | -8.615850e-47 |
| Msa0208220 | Msa0617640 | 0.808441 | 3.093089e-50 | -8.615850e-47 |
| Msa0208220 | Msa0625720 | 0.804058 | 2.591828e-49 | -8.615850e-47 |
| Msa0208220 | Msa0643560 | 0.805792 | 1.124922e-49 | -8.615850e-47 |
| Msa0208220 | Msa0660490 | 0.803310 | 3.706271e-49 | -8.615850e-47 |
| Msa0208220 | Msa0663390 | 0.815798 | 7.685983e-52 | -8.615850e-47 |
| Msa0208220 | Msa0675410 | 0.801521 | 8.658811e-49 | -8.615850e-47 |
| Msa0208220 | Msa0685140 | 0.801619 | 8.265596e-49 | -8.615850e-47 |
| Msa0208220 | Msa0692830 | 0.816270 | 6.030467e-52 | -8.615850e-47 |
| Msa0208220 | Msa0692950 | 0.818091 | 2.349214e-52 | -8.615850e-47 |
| Msa0208220 | Msa0698540 | 0.815597 | 8.519373e-52 | -8.615850e-47 |
| Msa0208220 | Msa0711780 | 0.806297 | 8.808496e-50 | -8.615850e-47 |
| Msa0208220 | Msa0715700 | 0.804318 | 2.288154e-49 | -8.615850e-47 |
| Msa0208220 | Msa0716840 | 0.826166 | 3.149585e-54 | -8.615850e-47 |
| Msa0208220 | Msa0743720 | 0.803085 | 4.123901e-49 | -8.615850e-47 |
| Msa0208220 | Msa0745790 | 0.813250 | 2.815120e-51 | -8.615850e-47 |
| Msa0208220 | Msa0784860 | 0.817597 | 3.036567e-52 | -8.615850e-47 |
| Msa0208220 | Msa0786270 | 0.808308 | 3.301390e-50 | -8.615850e-47 |
| Msa0208220 | Msa0793800 | 0.833471 | 5.232090e-56 | -8.615850e-47 |
| Msa0208220 | Msa0794670 | 0.809626 | 1.723913e-50 | -8.615850e-47 |
| Msa0208220 | Msa0808270 | 0.812167 | 4.858920e-51 | -8.615850e-47 |
| Msa0208220 | Msa0812570 | 0.804321 | 2.284518e-49 | -8.615850e-47 |
| Msa0208220 | Msa0813720 | 0.807296 | 5.417526e-50 | -8.615850e-47 |
| Msa0208220 | Msa0816700 | 0.800816 | 1.206949e-48 | -8.615850e-47 |
| Msa0208220 | Msa0824680 | 0.809713 | 1.651646e-50 | -8.615850e-47 |
| Msa0208220 | Msa0830540 | 0.801773 | 7.688024e-49 | -8.615850e-47 |
| Msa0208220 | Msa0831530 | 0.829564 | 4.797650e-55 | -8.615850e-47 |
| Msa0208220 | Msa0849030 | 0.807786 | 4.263590e-50 | -8.615850e-47 |
| Msa0208220 | Msa0863870 | 0.809208 | 2.119485e-50 | -8.615850e-47 |
| Msa0208220 | Msa0866550 | 0.805865 | 1.086197e-49 | -8.615850e-47 |
| Msa0208220 | Msa0900110 | 0.805250 | 1.461292e-49 | -8.615850e-47 |
| Msa0208220 | Msa0926850 | 0.810102 | 1.362098e-50 | -8.615850e-47 |
| Msa0208220 | Msa0936300 | 0.808330 | 3.265896e-50 | -8.615850e-47 |
| Msa0208220 | Msa0942070 | 0.811978 | 5.341696e-51 | -8.615850e-47 |
| Msa0208220 | Msa0945440 | 0.800032 | 1.743489e-48 | -8.615850e-47 |
| Msa0208220 | Msa0947660 | 0.813997 | 1.928050e-51 | -8.615850e-47 |
| Msa0208220 | Msa0970420 | 0.807038 | 6.144993e-50 | -8.615850e-47 |
| Msa0208220 | Msa0973100 | 0.802039 | 6.777837e-49 | -8.615850e-47 |
| Msa0208220 | Msa0989540 | 0.801868 | 7.347272e-49 | -8.615850e-47 |
| Msa0208220 | Msa0999970 | 0.811769 | 5.931662e-51 | -8.615850e-47 |
| Msa0208220 | Msa1003620 | 0.815899 | 7.297934e-52 | -8.615850e-47 |
| Msa0208220 | Msa1007830 | 0.802540 | 5.345324e-49 | -8.615850e-47 |
| Msa0208220 | Msa1009820 | 0.823883 | 1.089414e-53 | -8.615850e-47 |
| Msa0208220 | Msa1012830 | 0.820320 | 7.299361e-53 | -8.615850e-47 |
| Msa0208220 | Msa1037420 | 0.814303 | 1.650416e-51 | -8.615850e-47 |
| Msa0208220 | Msa1039140 | 0.816761 | 4.680489e-52 | -8.615850e-47 |
| Msa0208220 | Msa1046460 | 0.804839 | 1.781456e-49 | -8.615850e-47 |
| Msa0208220 | Msa1051200 | 0.844144 | 9.065559e-59 | -8.615850e-47 |
| Msa0208220 | Msa1077030 | 0.817599 | 3.032679e-52 | -8.615850e-47 |
| Msa0208220 | Msa1082500 | 0.802759 | 4.817533e-49 | -8.615850e-47 |
| Msa0208220 | Msa1087710 | 0.803295 | 3.732560e-49 | -8.615850e-47 |
| Msa0208220 | Msa1088640 | 0.808782 | 2.615378e-50 | -8.615850e-47 |
| Msa0208220 | Msa1089020 | 0.817935 | 2.547985e-52 | -8.615850e-47 |
| Msa0208220 | Msa1091940 | 0.820983 | 5.140691e-53 | -8.615850e-47 |
| Msa0208220 | Msa1104140 | 0.804357 | 2.245431e-49 | -8.615850e-47 |
| Msa0208220 | Msa1104210 | 0.803235 | 3.839965e-49 | -8.615850e-47 |
| Msa0208220 | Msa1106700 | 0.821137 | 4.736509e-53 | -8.615850e-47 |
| Msa0208220 | Msa1109680 | 0.801993 | 6.927473e-49 | -8.615850e-47 |
| Msa0208220 | Msa1136540 | 0.842625 | 2.306972e-58 | -8.615850e-47 |
| Msa0208220 | Msa1137700 | 0.829102 | 6.211004e-55 | -8.615850e-47 |
| Msa0208220 | Msa1160590 | 0.806950 | 6.414138e-50 | -8.615850e-47 |
| Msa0208220 | Msa1169550 | 0.809130 | 2.202400e-50 | -8.615850e-47 |
| Msa0208220 | Msa1181250 | 0.804596 | 2.002753e-49 | -8.615850e-47 |
| Msa0208220 | Msa1186950 | -0.804189 | 2.434509e-49 | -8.615850e-47 |
| Msa0208220 | Msa1208880 | 0.821652 | 3.603767e-53 | -8.615850e-47 |
| Msa0208220 | Msa1209760 | 0.804688 | 1.915706e-49 | -8.615850e-47 |
| Msa0208220 | Msa1245930 | 0.813125 | 2.998365e-51 | -8.615850e-47 |
| Msa0208220 | Msa1253800 | 0.809607 | 1.740372e-50 | -8.615850e-47 |
| Msa0208220 | Msa1259060 | 0.812375 | 4.374948e-51 | -8.615850e-47 |
| Msa0208220 | Msa1275360 | 0.809456 | 1.875621e-50 | -8.615850e-47 |
| Msa0208220 | Msa1305340 | 0.800326 | 1.519101e-48 | -8.615850e-47 |
| Msa0208220 | Msa1306860 | 0.803734 | 3.025747e-49 | -8.615850e-47 |
| Msa0208220 | Msa1332590 | 0.803821 | 2.902760e-49 | -8.615850e-47 |
| Msa0208220 | Msa1335250 | 0.805562 | 1.257031e-49 | -8.615850e-47 |
| Msa0208220 | Msa1348490 | 0.823153 | 1.614548e-53 | -8.615850e-47 |
| Msa0208220 | Msa1358250 | 0.800621 | 1.322602e-48 | -8.615850e-47 |
| Msa0208220 | Msa1359040 | 0.815650 | 8.292694e-52 | -8.615850e-47 |
| Msa0208220 | Msa1382560 | 0.808080 | 3.691590e-50 | -8.615850e-47 |
| Msa0208220 | Msa1385100 | 0.803065 | 4.163573e-49 | -8.615850e-47 |
| Msa0208220 | Msa1388860 | 0.801433 | 9.026192e-49 | -8.615850e-47 |
| Msa0208220 | Msa1392780 | 0.804258 | 2.354626e-49 | -8.615850e-47 |
| Msa0208220 | Msa1394290 | 0.801178 | 1.017723e-48 | -8.615850e-47 |
| Msa0208220 | Msa1400580 | 0.819402 | 1.183425e-52 | -8.615850e-47 |
| Msa0208220 | Msa1403340 | 0.812351 | 4.429927e-51 | -8.615850e-47 |
| Msa0208220 | Msa1410100 | 0.823352 | 1.450966e-53 | -8.615850e-47 |
| Msa0208220 | Msa1416150 | 0.801515 | 8.681976e-49 | -8.615850e-47 |
| Msa0208220 | Msa1419870 | 0.814319 | 1.636444e-51 | -8.615850e-47 |
| Msa0208220 | Msa1430120 | 0.803319 | 3.690337e-49 | -8.615850e-47 |
| Msa0208220 | Msa1433390 | 0.804481 | 2.116200e-49 | -8.615850e-47 |
| Msa0208220 | Msa1444310 | 0.805023 | 1.630586e-49 | -8.615850e-47 |
| Msa0208220 | Msa1454480 | 0.809045 | 2.297493e-50 | -8.615850e-47 |
| Msa0208220 | Msa1457920 | 0.812747 | 3.628695e-51 | -8.615850e-47 |
| Msa0208220 | Msa1460740 | 0.805077 | 1.588409e-49 | -8.615850e-47 |
| Msa0208220 | Msa1465960 | 0.810696 | 1.013869e-50 | -8.615850e-47 |
| Msa0208220 | Msa1466540 | 0.813710 | 2.229691e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTAGTGATGCTAATGTTT+GGG | 0.296908 | 2_1:-42788565 | Msa0208210:CDS |
| CAAGAGATGAATGGTACTTA+TGG | 0.328250 | 2_1:-42788696 | Msa0208210:intron |
| GAGGTTTATCGAGGAGAAAA+TGG | 0.338158 | 2_1:-42788598 | Msa0208210:CDS |
| CAGCTAGTGATGCTAATGTT+TGG | 0.368928 | 2_1:-42788566 | Msa0208210:CDS |
| CAGAGTCAGGAGTATGATTT+CGG | 0.383123 | 2_1:-42788391 | Msa0208210:CDS |
| TTTATAAGAATATTAATGTT+GGG | 0.418912 | 2_1:-42788518 | Msa0208210:CDS |
| ATGCAGAGGCAAACAGAGTC+AGG | 0.420988 | 2_1:-42788404 | Msa0208210:CDS |
| CTGCACATTTCCTGTGCTTG+TGG | 0.425694 | 2_1:+42788282 | Msa0208220:CDS |
| GAAGTTGAAGAATTTCTTGC+TGG | 0.425907 | 2_1:-42788318 | Msa0208210:CDS |
| ATTTATAAGAATATTAATGT+TGG | 0.426369 | 2_1:-42788519 | Msa0208210:CDS |
| GTGGATCTTCTGTCTAGGTC+TGG | 0.460203 | 2_1:-42788639 | Msa0208210:CDS |
| AGGAGTATGATTTCGGAAGC+AGG | 0.476230 | 2_1:-42788384 | Msa0208210:CDS |
| TATAACATATATAGAGAAGC+TGG | 0.482328 | 2_1:-42788432 | Msa0208210:intron |
| TGGTTATTTCAAGAGATGAA+TGG | 0.487574 | 2_1:-42788705 | Msa0208210:intron |
| TCTGTCTAGGTCTGGAATGG+TGG | 0.516971 | 2_1:-42788631 | Msa0208210:CDS |
| CATATATAGAGAAGCTGGGT+GGG | 0.523154 | 2_1:-42788427 | Msa0208210:intron |
| AGGTTTATCGAGGAGAAAAT+GGG | 0.529645 | 2_1:-42788597 | Msa0208210:CDS |
| TTTCTCCTCGATAAACCTCT+CGG | 0.534801 | 2_1:+42788602 | Msa0208220:CDS |
| CACGCGTAATGCTCCGCACA+TGG | 0.543416 | 2_1:+42788666 | Msa0208220:CDS |
| GTCTAGGTCTGGAATGGTGG+AGG | 0.550083 | 2_1:-42788628 | Msa0208210:CDS |
| TCTTCTGTCTAGGTCTGGAA+TGG | 0.551167 | 2_1:-42788634 | Msa0208210:CDS |
| CACAAGCACAGGAAATGTGC+AGG | 0.552494 | 2_1:-42788281 | Msa0208210:CDS |
| GTGTTGTGGATCTTCTGTCT+AGG | 0.553175 | 2_1:-42788644 | Msa0208210:CDS |
| TCAATCTCATCCACAAGCAC+AGG | 0.569633 | 2_1:-42788292 | Msa0208210:CDS |
| AGAAGCTGGGTGGGATGCAG+AGG | 0.572547 | 2_1:-42788418 | Msa0208210:intron |
| GCAGGGATGAAGAAGAAACC+TGG | 0.586194 | 2_1:-42788366 | Msa0208210:CDS |
| TTTATCGAGGAGAAAATGGG+TGG | 0.586896 | 2_1:-42788594 | Msa0208210:CDS |
| TTAATGTTGGGAATAGAGTG+TGG | 0.596474 | 2_1:-42788506 | Msa0208210:CDS |
| ACCTCGATTATACTGCATCC+AGG | 0.612701 | 2_1:+42788348 | Msa0208220:CDS |
| GATATGGGCGTAGCTGATTG+TGG | 0.616311 | 2_1:-42788471 | Msa0208210:intron |
| GGAGTATGATTTCGGAAGCA+GGG | 0.617438 | 2_1:-42788383 | Msa0208210:CDS |
| ATAACATATATAGAGAAGCT+GGG | 0.623189 | 2_1:-42788431 | Msa0208210:intron |
| GGATGCAGTATAATCGAGGT+AGG | 0.626649 | 2_1:-42788345 | Msa0208210:CDS |
| GGAAGCCGAGAGGTTTATCG+AGG | 0.636017 | 2_1:-42788607 | Msa0208210:CDS |
| GGAGCATTACGCGTGTGTTG+TGG | 0.641024 | 2_1:-42788658 | Msa0208210:CDS |
| GCTAGTGATGCTAATGTTTG+GGG | 0.655428 | 2_1:-42788564 | Msa0208210:CDS |
| ACCTGGATGCAGTATAATCG+AGG | 0.656446 | 2_1:-42788349 | Msa0208210:CDS |
| ACATATATAGAGAAGCTGGG+TGG | 0.667110 | 2_1:-42788428 | Msa0208210:intron |
| TTATGGAGTTGAGCCATGTG+CGG | 0.684348 | 2_1:-42788679 | Msa0208210:CDS |
| GAATGGTGGAGGAAGCCGAG+AGG | 0.732280 | 2_1:-42788617 | Msa0208210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATAAGAATATTAATGTT+GGG | - | chr2_1:42788521-42788540 | Msa0208210:CDS | 10.0% |
| !! | ATTTATAAGAATATTAATGT+TGG | - | chr2_1:42788522-42788541 | Msa0208210:CDS | 10.0% |
| !! | TTTATAAGAATATTAATGTT+GGG | - | chr2_1:42788521-42788540 | Msa0208210:CDS | 10.0% |
| !! | ATTTATAAGAATATTAATGT+TGG | - | chr2_1:42788522-42788541 | Msa0208210:CDS | 10.0% |
| !!! | ATTTCTTTTATGAATACTAT+AGG | + | chr2_1:42788151-42788170 | Msa0208220:intron | 15.0% |
| !!! | ATTTCTTTTATGAATACTAT+AGG | + | chr2_1:42788151-42788170 | Msa0208220:intron | 15.0% |
| !!! | AAAATGGTTTTTTCAAACAT+GGG | - | chr2_1:42787758-42787777 | Msa0208210:CDS | 20.0% |
| !!! | AAAAATGGTTTTTTCAAACA+TGG | - | chr2_1:42787759-42787778 | Msa0208210:CDS | 20.0% |
| !! | AATAAAAGATGATTAACAGA+AGG | + | chr2_1:42787824-42787843 | Msa0208220:intron | 20.0% |
| !! | ATAAAAGATGATTAACAGAA+GGG | + | chr2_1:42787825-42787844 | Msa0208220:intron | 20.0% |
| !! | TACAAAGCAATAAGATAATT+TGG | + | chr2_1:42788188-42788207 | Msa0208220:intron | 20.0% |
| !! | AATATAGACAACTTCTAATT+GGG | - | chr2_1:42788234-42788253 | Msa0208210:intron | 20.0% |
| !!! | AAAATGGTTTTTTCAAACAT+GGG | - | chr2_1:42787758-42787777 | Msa0208210:CDS | 20.0% |
| !!! | AAAAATGGTTTTTTCAAACA+TGG | - | chr2_1:42787759-42787778 | Msa0208210:CDS | 20.0% |
| !! | AATAAAAGATGATTAACAGA+AGG | + | chr2_1:42787824-42787843 | Msa0208220:intron | 20.0% |
| !! | ATAAAAGATGATTAACAGAA+GGG | + | chr2_1:42787825-42787844 | Msa0208220:intron | 20.0% |
| !! | TACAAAGCAATAAGATAATT+TGG | + | chr2_1:42788188-42788207 | Msa0208220:intron | 20.0% |
| !! | AATATAGACAACTTCTAATT+GGG | - | chr2_1:42788234-42788253 | Msa0208210:intron | 20.0% |
| !!! | TACATTTTGGCTACAAATTT+GGG | - | chr2_1:42787905-42787924 | Msa0208210:intron | 25.0% |
| !!! | ATACATTTTGGCTACAAATT+TGG | - | chr2_1:42787906-42787925 | Msa0208210:intron | 25.0% |
| ! | AATTTGTAGCCAAAATGTAT+TGG | + | chr2_1:42787906-42787925 | Msa0208220:intron | 25.0% |
| ! | ATTGTTGTACTCTCTATAAT+CGG | + | chr2_1:42787978-42787997 | Msa0208220:intron | 25.0% |
| ! | AATTTGGAGAATATATACAC+TGG | - | chr2_1:42788075-42788094 | Msa0208210:intron | 25.0% |
| ! | TTCTCCAAATTCTTTATACA+AGG | + | chr2_1:42788084-42788103 | Msa0208220:intron | 25.0% |
| ! | ATGTCCTTGTATAAAGAATT+TGG | - | chr2_1:42788091-42788110 | Msa0208210:intron | 25.0% |
| ! | GAATATAGACAACTTCTAAT+TGG | - | chr2_1:42788235-42788254 | Msa0208210:intron | 25.0% |
| ! | ATAACATATATAGAGAAGCT+GGG | - | chr2_1:42788434-42788453 | Msa0208210:intron | 25.0% |
| ! | TATAACATATATAGAGAAGC+TGG | - | chr2_1:42788435-42788454 | Msa0208210:intron | 25.0% |
| !!! | TACATTTTGGCTACAAATTT+GGG | - | chr2_1:42787905-42787924 | Msa0208210:intron | 25.0% |
| !!! | ATACATTTTGGCTACAAATT+TGG | - | chr2_1:42787906-42787925 | Msa0208210:intron | 25.0% |
| ! | AATTTGTAGCCAAAATGTAT+TGG | + | chr2_1:42787906-42787925 | Msa0208220:intron | 25.0% |
| ! | ATTGTTGTACTCTCTATAAT+CGG | + | chr2_1:42787978-42787997 | Msa0208220:intron | 25.0% |
| ! | AATTTGGAGAATATATACAC+TGG | - | chr2_1:42788075-42788094 | Msa0208210:intron | 25.0% |
| ! | TTCTCCAAATTCTTTATACA+AGG | + | chr2_1:42788084-42788103 | Msa0208220:intron | 25.0% |
| ! | ATGTCCTTGTATAAAGAATT+TGG | - | chr2_1:42788091-42788110 | Msa0208210:intron | 25.0% |
| ! | GAATATAGACAACTTCTAAT+TGG | - | chr2_1:42788235-42788254 | Msa0208210:intron | 25.0% |
| ! | ATAACATATATAGAGAAGCT+GGG | - | chr2_1:42788434-42788453 | Msa0208210:intron | 25.0% |
| ! | TATAACATATATAGAGAAGC+TGG | - | chr2_1:42788435-42788454 | Msa0208210:intron | 25.0% |
| ! | ATGAACTGACCAATACATTT+TGG | - | chr2_1:42787918-42787937 | Msa0208210:intron | 30.0% |
| TGGAAAAAGCTGATAGATAT+GGG | - | chr2_1:42788489-42788508 | Msa0208210:CDS | 30.0% | |
| ! | ATGAACTGACCAATACATTT+TGG | - | chr2_1:42787918-42787937 | Msa0208210:intron | 30.0% |
| TGGAAAAAGCTGATAGATAT+GGG | - | chr2_1:42788489-42788508 | Msa0208210:CDS | 30.0% | |
| !! | TCTGTTTGGTGTTGGAAAAA+TGG | - | chr2_1:42787774-42787793 | Msa0208210:CDS | 35.0% |
| TTTATGAATACTATAGGCCC+TGG | + | chr2_1:42788157-42788176 | Msa0208220:intron | 35.0% | |
| TGCTTTGTAGTCATTTACCA+GGG | - | chr2_1:42788177-42788196 | Msa0208210:intron | 35.0% | |
| TTGCTTTGTAGTCATTTACC+AGG | - | chr2_1:42788178-42788197 | Msa0208210:intron | 35.0% | |
| GAAGTTGAAGAATTTCTTGC+TGG | - | chr2_1:42788321-42788340 | Msa0208210:CDS | 35.0% | |
| GTGGAAAAAGCTGATAGATA+TGG | - | chr2_1:42788490-42788509 | Msa0208210:CDS | 35.0% | |
| TTAATGTTGGGAATAGAGTG+TGG | - | chr2_1:42788509-42788528 | Msa0208210:CDS | 35.0% | |
| AGCTAGTGATGCTAATGTTT+GGG | - | chr2_1:42788568-42788587 | Msa0208210:CDS | 35.0% | |
| AGGTTTATCGAGGAGAAAAT+GGG | - | chr2_1:42788600-42788619 | Msa0208210:CDS | 35.0% | |
| CAAGAGATGAATGGTACTTA+TGG | - | chr2_1:42788699-42788718 | Msa0208210:intron | 35.0% | |
| !! | TCTGTTTGGTGTTGGAAAAA+TGG | - | chr2_1:42787774-42787793 | Msa0208210:CDS | 35.0% |
| TTTATGAATACTATAGGCCC+TGG | + | chr2_1:42788157-42788176 | Msa0208220:intron | 35.0% | |
| TGCTTTGTAGTCATTTACCA+GGG | - | chr2_1:42788177-42788196 | Msa0208210:intron | 35.0% | |
| TTGCTTTGTAGTCATTTACC+AGG | - | chr2_1:42788178-42788197 | Msa0208210:intron | 35.0% | |
| GAAGTTGAAGAATTTCTTGC+TGG | - | chr2_1:42788321-42788340 | Msa0208210:CDS | 35.0% | |
| GTGGAAAAAGCTGATAGATA+TGG | - | chr2_1:42788490-42788509 | Msa0208210:CDS | 35.0% | |
| TTAATGTTGGGAATAGAGTG+TGG | - | chr2_1:42788509-42788528 | Msa0208210:CDS | 35.0% | |
| AGCTAGTGATGCTAATGTTT+GGG | - | chr2_1:42788568-42788587 | Msa0208210:CDS | 35.0% | |
| AGGTTTATCGAGGAGAAAAT+GGG | - | chr2_1:42788600-42788619 | Msa0208210:CDS | 35.0% | |
| CAAGAGATGAATGGTACTTA+TGG | - | chr2_1:42788699-42788718 | Msa0208210:intron | 35.0% | |
| AACAGAAGGGAAAGCAGAAA+TGG | + | chr2_1:42787838-42787857 | Msa0208220:intron | 40.0% | |
| GCTGGATTCAATACTCAAGA+TGG | - | chr2_1:42788259-42788278 | Msa0208210:CDS | 40.0% | |
| ! | CAGAGTCAGGAGTATGATTT+CGG | - | chr2_1:42788394-42788413 | Msa0208210:CDS | 40.0% |
| CATATATAGAGAAGCTGGGT+GGG | - | chr2_1:42788430-42788449 | Msa0208210:intron | 40.0% | |
| ACATATATAGAGAAGCTGGG+TGG | - | chr2_1:42788431-42788450 | Msa0208210:intron | 40.0% | |
| GCTAGTGATGCTAATGTTTG+GGG | - | chr2_1:42788567-42788586 | Msa0208210:CDS | 40.0% | |
| CAGCTAGTGATGCTAATGTT+TGG | - | chr2_1:42788569-42788588 | Msa0208210:CDS | 40.0% | |
| TTTATCGAGGAGAAAATGGG+TGG | - | chr2_1:42788597-42788616 | Msa0208210:CDS | 40.0% | |
| GAGGTTTATCGAGGAGAAAA+TGG | - | chr2_1:42788601-42788620 | Msa0208210:CDS | 40.0% | |
| TTTCTCCTCGATAAACCTCT+CGG | + | chr2_1:42788602-42788621 | Msa0208220:CDS | 40.0% | |
| AACAGAAGGGAAAGCAGAAA+TGG | + | chr2_1:42787838-42787857 | Msa0208220:intron | 40.0% | |
| GCTGGATTCAATACTCAAGA+TGG | - | chr2_1:42788259-42788278 | Msa0208210:CDS | 40.0% | |
| ! | CAGAGTCAGGAGTATGATTT+CGG | - | chr2_1:42788394-42788413 | Msa0208210:CDS | 40.0% |
| CATATATAGAGAAGCTGGGT+GGG | - | chr2_1:42788430-42788449 | Msa0208210:intron | 40.0% | |
| ACATATATAGAGAAGCTGGG+TGG | - | chr2_1:42788431-42788450 | Msa0208210:intron | 40.0% | |
| GCTAGTGATGCTAATGTTTG+GGG | - | chr2_1:42788567-42788586 | Msa0208210:CDS | 40.0% | |
| CAGCTAGTGATGCTAATGTT+TGG | - | chr2_1:42788569-42788588 | Msa0208210:CDS | 40.0% | |
| TTTATCGAGGAGAAAATGGG+TGG | - | chr2_1:42788597-42788616 | Msa0208210:CDS | 40.0% | |
| GAGGTTTATCGAGGAGAAAA+TGG | - | chr2_1:42788601-42788620 | Msa0208210:CDS | 40.0% | |
| TTTCTCCTCGATAAACCTCT+CGG | + | chr2_1:42788602-42788621 | Msa0208220:CDS | 40.0% | |
| TCCAACACCAAACAGATGAG+CGG | + | chr2_1:42787778-42787797 | Msa0208220:intron | 45.0% | |
| GGCTTATTTAAGCTCAAGCC+TGG | - | chr2_1:42788054-42788073 | Msa0208210:intron | 45.0% | |
| TCAATCTCATCCACAAGCAC+AGG | - | chr2_1:42788295-42788314 | Msa0208210:CDS | 45.0% | |
| GGATGCAGTATAATCGAGGT+AGG | - | chr2_1:42788348-42788367 | Msa0208210:CDS | 45.0% | |
| ACCTCGATTATACTGCATCC+AGG | + | chr2_1:42788348-42788367 | Msa0208220:CDS | 45.0% | |
| ACCTGGATGCAGTATAATCG+AGG | - | chr2_1:42788352-42788371 | Msa0208210:CDS | 45.0% | |
| GGAGTATGATTTCGGAAGCA+GGG | - | chr2_1:42788386-42788405 | Msa0208210:CDS | 45.0% | |
| ! | AGGAGTATGATTTCGGAAGC+AGG | - | chr2_1:42788387-42788406 | Msa0208210:CDS | 45.0% |
| TCTTCTGTCTAGGTCTGGAA+TGG | - | chr2_1:42788637-42788656 | Msa0208210:CDS | 45.0% | |
| GTGTTGTGGATCTTCTGTCT+AGG | - | chr2_1:42788647-42788666 | Msa0208210:CDS | 45.0% | |
| TTATGGAGTTGAGCCATGTG+CGG | - | chr2_1:42788682-42788701 | Msa0208210:CDS | 45.0% | |
| TCCAACACCAAACAGATGAG+CGG | + | chr2_1:42787778-42787797 | Msa0208220:intron | 45.0% | |
| GGCTTATTTAAGCTCAAGCC+TGG | - | chr2_1:42788054-42788073 | Msa0208210:intron | 45.0% | |
| TCAATCTCATCCACAAGCAC+AGG | - | chr2_1:42788295-42788314 | Msa0208210:CDS | 45.0% | |
| GGATGCAGTATAATCGAGGT+AGG | - | chr2_1:42788348-42788367 | Msa0208210:CDS | 45.0% | |
| ACCTCGATTATACTGCATCC+AGG | + | chr2_1:42788348-42788367 | Msa0208220:CDS | 45.0% | |
| ACCTGGATGCAGTATAATCG+AGG | - | chr2_1:42788352-42788371 | Msa0208210:CDS | 45.0% | |
| GGAGTATGATTTCGGAAGCA+GGG | - | chr2_1:42788386-42788405 | Msa0208210:CDS | 45.0% | |
| ! | AGGAGTATGATTTCGGAAGC+AGG | - | chr2_1:42788387-42788406 | Msa0208210:CDS | 45.0% |
| TCTTCTGTCTAGGTCTGGAA+TGG | - | chr2_1:42788637-42788656 | Msa0208210:CDS | 45.0% | |
| GTGTTGTGGATCTTCTGTCT+AGG | - | chr2_1:42788647-42788666 | Msa0208210:CDS | 45.0% | |
| TTATGGAGTTGAGCCATGTG+CGG | - | chr2_1:42788682-42788701 | Msa0208210:CDS | 45.0% | |
| ACAGGAAATGTGCAGGTTGC+TGG | - | chr2_1:42788277-42788296 | Msa0208210:CDS | 50.0% | |
| CACAAGCACAGGAAATGTGC+AGG | - | chr2_1:42788284-42788303 | Msa0208210:CDS | 50.0% | |
| CTGCACATTTCCTGTGCTTG+TGG | + | chr2_1:42788282-42788301 | Msa0208220:CDS | 50.0% | |
| GCAGGGATGAAGAAGAAACC+TGG | - | chr2_1:42788369-42788388 | Msa0208210:CDS | 50.0% | |
| ATGCAGAGGCAAACAGAGTC+AGG | - | chr2_1:42788407-42788426 | Msa0208210:CDS | 50.0% | |
| GATATGGGCGTAGCTGATTG+TGG | - | chr2_1:42788474-42788493 | Msa0208210:CDS | 50.0% | |
| ! | TCTGTCTAGGTCTGGAATGG+TGG | - | chr2_1:42788634-42788653 | Msa0208210:CDS | 50.0% |
| GTGGATCTTCTGTCTAGGTC+TGG | - | chr2_1:42788642-42788661 | Msa0208210:CDS | 50.0% | |
| ACAGGAAATGTGCAGGTTGC+TGG | - | chr2_1:42788277-42788296 | Msa0208210:CDS | 50.0% | |
| CACAAGCACAGGAAATGTGC+AGG | - | chr2_1:42788284-42788303 | Msa0208210:CDS | 50.0% | |
| CTGCACATTTCCTGTGCTTG+TGG | + | chr2_1:42788282-42788301 | Msa0208220:CDS | 50.0% | |
| GCAGGGATGAAGAAGAAACC+TGG | - | chr2_1:42788369-42788388 | Msa0208210:CDS | 50.0% | |
| ATGCAGAGGCAAACAGAGTC+AGG | - | chr2_1:42788407-42788426 | Msa0208210:CDS | 50.0% | |
| GATATGGGCGTAGCTGATTG+TGG | - | chr2_1:42788474-42788493 | Msa0208210:CDS | 50.0% | |
| ! | TCTGTCTAGGTCTGGAATGG+TGG | - | chr2_1:42788634-42788653 | Msa0208210:CDS | 50.0% |
| GTGGATCTTCTGTCTAGGTC+TGG | - | chr2_1:42788642-42788661 | Msa0208210:CDS | 50.0% | |
| !! | GCCGCTCATCTGTTTGGTGT+TGG | - | chr2_1:42787782-42787801 | Msa0208210:CDS | 55.0% |
| CCTCTTGCCGCTCATCTGTT+TGG | - | chr2_1:42787788-42787807 | Msa0208210:CDS | 55.0% | |
| CCAAACAGATGAGCGGCAAG+AGG | + | chr2_1:42787785-42787804 | Msa0208220:intron | 55.0% | |
| ACCTGAGAGCAAGATGCACC+AGG | + | chr2_1:42788033-42788052 | Msa0208220:intron | 55.0% | |
| GGAAGCCGAGAGGTTTATCG+AGG | - | chr2_1:42788610-42788629 | Msa0208210:CDS | 55.0% | |
| ! | GTCTAGGTCTGGAATGGTGG+AGG | - | chr2_1:42788631-42788650 | Msa0208210:CDS | 55.0% |
| ! | GGAGCATTACGCGTGTGTTG+TGG | - | chr2_1:42788661-42788680 | Msa0208210:CDS | 55.0% |
| !! | GCCGCTCATCTGTTTGGTGT+TGG | - | chr2_1:42787782-42787801 | Msa0208210:CDS | 55.0% |
| CCTCTTGCCGCTCATCTGTT+TGG | - | chr2_1:42787788-42787807 | Msa0208210:CDS | 55.0% | |
| CCAAACAGATGAGCGGCAAG+AGG | + | chr2_1:42787785-42787804 | Msa0208220:intron | 55.0% | |
| ACCTGAGAGCAAGATGCACC+AGG | + | chr2_1:42788033-42788052 | Msa0208220:intron | 55.0% | |
| GGAAGCCGAGAGGTTTATCG+AGG | - | chr2_1:42788610-42788629 | Msa0208210:CDS | 55.0% | |
| ! | GTCTAGGTCTGGAATGGTGG+AGG | - | chr2_1:42788631-42788650 | Msa0208210:CDS | 55.0% |
| ! | GGAGCATTACGCGTGTGTTG+TGG | - | chr2_1:42788661-42788680 | Msa0208210:CDS | 55.0% |
| GCCTGGTGCATCTTGCTCTC+AGG | - | chr2_1:42788037-42788056 | Msa0208210:intron | 60.0% | |
| AGAAGCTGGGTGGGATGCAG+AGG | - | chr2_1:42788421-42788440 | Msa0208210:intron | 60.0% | |
| ! | GAATGGTGGAGGAAGCCGAG+AGG | - | chr2_1:42788620-42788639 | Msa0208210:CDS | 60.0% |
| CACGCGTAATGCTCCGCACA+TGG | + | chr2_1:42788666-42788685 | Msa0208220:CDS | 60.0% | |
| GCCTGGTGCATCTTGCTCTC+AGG | - | chr2_1:42788037-42788056 | Msa0208210:intron | 60.0% | |
| AGAAGCTGGGTGGGATGCAG+AGG | - | chr2_1:42788421-42788440 | Msa0208210:intron | 60.0% | |
| ! | GAATGGTGGAGGAAGCCGAG+AGG | - | chr2_1:42788620-42788639 | Msa0208210:CDS | 60.0% |
| CACGCGTAATGCTCCGCACA+TGG | + | chr2_1:42788666-42788685 | Msa0208220:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 42787739 | 42788724 | 42787739 | ID=Msa0208220;Name=Msa0208220 |
| chr2_1 | mRNA | 42787739 | 42788724 | 42787739 | ID=Msa0208220-mRNA-1;Parent=Msa0208220;Name=Msa0208220-mRNA-1;_AED=0.98;_eAED=0.98;_QI=0|0|0|0.33|1|1|3|0|152 |
| chr2_1 | exon | 42787739 | 42787744 | 42787739 | ID=Msa0208220-mRNA-1:exon:12754;Parent=Msa0208220-mRNA-1 |
| chr2_1 | exon | 42788173 | 42788178 | 42788173 | ID=Msa0208220-mRNA-1:exon:12755;Parent=Msa0208220-mRNA-1 |
| chr2_1 | exon | 42788278 | 42788724 | 42788278 | ID=Msa0208220-mRNA-1:exon:12756;Parent=Msa0208220-mRNA-1 |
| chr2_1 | CDS | 42787739 | 42787744 | 42787739 | ID=Msa0208220-mRNA-1:cds;Parent=Msa0208220-mRNA-1 |
| chr2_1 | CDS | 42788173 | 42788178 | 42788173 | ID=Msa0208220-mRNA-1:cds;Parent=Msa0208220-mRNA-1 |
| chr2_1 | CDS | 42788278 | 42788724 | 42788278 | ID=Msa0208220-mRNA-1:cds;Parent=Msa0208220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
