AlfalfaGEDB | Msa0187070

M. sativa cultivar zhongmu-4 / Msa0187070

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363
PFAM: PF13041.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0187070	XP_003610748.2	95.879	825	34	0	3	827	14	838	0.0	1642

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0187070	sp\|Q9LUJ2\|PP249_ARATH	58.802	835	329	9	1	827	15	842	0.0	986

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0187070	G7K3Q3	95.879	825	34	0	3	827	14	838	0.0	1642

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0013050	Msa0187070	-0.816222	6.179622e-52	-8.615850e-47
Msa0030380	Msa0187070	0.831750	1.398341e-55	-8.615850e-47
Msa0032580	Msa0187070	0.824714	6.949876e-54	-8.615850e-47
Msa0044710	Msa0187070	0.806838	6.773173e-50	-8.615850e-47
Msa0085360	Msa0187070	-0.811798	5.846602e-51	-8.615850e-47
Msa0095380	Msa0187070	0.820978	5.153108e-53	-8.615850e-47
Msa0119850	Msa0187070	0.803467	3.438867e-49	-8.615850e-47
Msa0135380	Msa0187070	0.803730	3.031803e-49	-8.615850e-47
Msa0141440	Msa0187070	0.806389	8.422966e-50	-8.615850e-47
Msa0143140	Msa0187070	-0.824637	7.247168e-54	-8.615850e-47

Showing 1 to 10 of 187 entries

Previous1 2 3 4 5…19Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0187070	MtrunA17_Chr5g0394691	95.879	825	34	0	3	827	14	838	0.0	1642
Msa0187070	MtrunA17_Chr3g0099291	37.091	825	474	5	7	827	2	785	0.0	566
Msa0187070	MtrunA17_Chr4g0003141	39.321	707	420	5	127	827	41	744	0.0	546
Msa0187070	MtrunA17_Chr4g0003141	30.912	592	319	15	1	549	25	569	1.83e-69	244
Msa0187070	MtrunA17_Chr3g0081081	35.860	831	485	8	1	827	6	792	5.88e-177	529
Msa0187070	MtrunA17_Chr4g0063341	39.378	739	376	8	127	827	34	738	3.10e-174	520
Msa0187070	MtrunA17_Chr4g0063341	31.818	594	329	12	21	573	28	586	2.22e-77	266
Msa0187070	MtrunA17_Chr7g0228601	36.779	745	466	2	87	827	209	952	2.13e-173	525
Msa0187070	MtrunA17_Chr7g0228601	27.857	560	368	6	32	590	54	578	1.51e-67	242
Msa0187070	MtrunA17_Chr7g0228601	28.462	520	336	5	99	615	19	505	1.49e-59	219

Showing 1 to 10 of 1,179 entries

Previous1 2 3 4 5…118Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0187070	AT3G22690.2	58.802	835	329	9	1	827	15	842	0.0	986
Msa0187070	AT3G22690.1	58.753	834	329	9	1	826	15	841	0.0	981
Msa0187070	AT3G22690.3	56.168	835	320	10	1	827	15	811	0.0	919
Msa0187070	AT2G29760.1	37.916	691	424	4	142	827	48	738	1.01e-174	522
Msa0187070	AT2G29760.1	31.810	569	314	10	8	536	15	549	3.23e-83	282
Msa0187070	AT4G18750.1	37.568	740	429	4	89	827	164	871	3.51e-173	522
Msa0187070	AT4G18750.1	30.326	521	323	9	11	526	188	673	4.41e-67	240
Msa0187070	AT4G18750.1	26.945	527	347	5	84	608	60	550	9.99e-56	207
Msa0187070	AT4G18750.1	28.030	396	266	7	68	452	347	734	1.51e-40	161
Msa0187070	AT1G11290.1	34.525	811	489	6	21	827	37	809	2.62e-171	515

Showing 1 to 10 of 1,374 entries

Previous1 2 3 4 5…138Next

Find 177 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACGCATAGCATTTAG+AGG	0.359052	2_1:-1822036	None:intergenic
AAACATGCTTGCTTGAACCA+TGG	0.492861	2_1:-1821806	None:intergenic
AAACTGTAGGCTAAGCCAGG+TGG	0.616288	2_1:+1822701	Msa0187070:CDS
AAAGGGTTCCAGAAAGTGGC+TGG	0.511540	2_1:+1822579	Msa0187070:CDS
AAATGCTGCAGAAAGGACAG+CGG	0.722433	2_1:+1821458	Msa0187070:CDS
AAATTAGTGTCAAAACTATA+CGG	0.465930	2_1:+1822903	Msa0187070:CDS
AACTCTGATGGCTGCAGTCC+AGG	0.387905	2_1:-1822088	None:intergenic
AACTGTAGGCTAAGCCAGGT+GGG	0.540076	2_1:+1822702	Msa0187070:CDS
AAGAGATGAAGATTGATGAA+GGG	0.503234	2_1:-1820537	None:intergenic
AAGAGCTCCTAAATATCCAC+AGG	0.601726	2_1:-1821911	None:intergenic

Showing 1 to 10 of 177 entries

Previous1 2 3 4 5…18Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGAGATGAAGATTGATGAA+GGG	-	chr2_1:1820540-1820559	None:intergenic	30.0%
TAATTGTTTGAGCTCAATGA+GGG	-	chr2_1:1820621-1820640	None:intergenic	30.0%
CACTGTAACATGTTAAAGAA+AGG	+	chr2_1:1820641-1820660	Msa0187070:CDS	30.0%
AGCATAGTTTAAGCTTTCAT+GGG	-	chr2_1:1820714-1820733	None:intergenic	30.0%
ACAAGTATAAAGTGAACACT+TGG	-	chr2_1:1820765-1820784	None:intergenic	30.0%
ACTTGTAATACTCTGATTAG+AGG	+	chr2_1:1820779-1820798	Msa0187070:CDS	30.0%
CTTGTAATACTCTGATTAGA+GGG	+	chr2_1:1820780-1820799	Msa0187070:CDS	30.0%
AACATGCACTAAGCAAAAAT+GGG	-	chr2_1:1820895-1820914	None:intergenic	30.0%
AAGTTGAAGGATCTTGAATT+GGG	+	chr2_1:1821220-1821239	Msa0187070:CDS	30.0%
TAAAGGAGATAAAGTGACAA+TGG	+	chr2_1:1821873-1821892	Msa0187070:CDS	30.0%

Showing 1 to 10 of 205 entries

Previous1 2 3 4 5…21Next

Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	1820521	1823004	1820521	ID=Msa0187070;Name=Msa0187070
chr2_1	mRNA	1820521	1823004	1820521	ID=Msa0187070-mRNA-1;Parent=Msa0187070;Name=Msa0187070-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|827
chr2_1	exon	1820521	1823004	1820521	ID=Msa0187070-mRNA-1:exon:777;Parent=Msa0187070-mRNA-1
chr2_1	CDS	1820521	1823004	1820521	ID=Msa0187070-mRNA-1:cds;Parent=Msa0187070-mRNA-1

Gene Sequence

>Msa0187070

ATGGCTACTACTACAACCCTTCATCAATCTTCATCTCTTCTCTCACTTCCCACAACAACACAAAAGCCCAAAAACTCATCACTTCAAACCTGTAAAACCCTCATTGAGCTCAAACAATTACACTGTAACATGTTAAAGAAAGGTGTTTTTAACATCAACAAGCTCATTGCTGCTTGCGTCCAAATGGGTACCCATGAAAGCTTAAACTATGCTCTCAATGCTTTCAAGGAAGATGAAGGAACCAAGTGTTCACTTTATACTTGTAATACTCTGATTAGAGGGTATGCTGCATCTGGGTTATGTAAAGAAGCAATTTTTATTTATCTTCATATGATAATAGTGATGGGTATTGTTCCTGATAAGTTCACTTTCCCATTTTTGCTTAGTGCATGTTCGAAGATTATGGCATTTTGTGAGGGTGTTCAGGTTCATGGGATGGTTGTTAAGATGGGTTTGGTGAAAGATTTGTTTGTTGCTAACTCTTTGATACATTTTTATGCGGAATGTGGGAAGGTTGATTTGGGACGAAAGGTGTTTGATGAAATGCTTGAGAGAAATGTTGTGTCGTGGACTAGTTTGATTAATGGGTATAGTGGGGTGGATATGGCTAAAGAGGCCGTGTGTTTGTTCTTTGAGATGGTTGAGGCAGGTGTTGAACCAAATCCTGTGACTATGGTTTGTGCTATATCTGCTTGTGCTAAGTTGAAGGATCTTGAATTGGGTAAAAAAGTATGCAATTTGATGACGAAGTTGGGGGTGAAATCTAATACGCTCGTGGTGAATGCACTGCTCGATATGTACATGAAATGCGGAGACATGTGCGCTGTAAGAGAAATTTTTGATGAATTTAGTGATAAGAATTTGGTTATGTACAATACTATCATGACGAATTATGTGCAACGTGGGCTGGCTGGTGAAGTGCTACTTGTTTTGGATGAAATGCTGCAGAAAGGACAGCGGCCAGATAAGGTGACTATGTTATCTACTATTGCAGCCTGTGCACAGTTAGGTGATCTTCCTGTTGGGAAGTCATCTCATGCTTATGTGTTCAGGAACGGACTAGAGAGTTGGGACAACATTTCTAATGCCATCATTGACATGTATATGAAATGTGGCAAAAGAGAAGCTGCTTGCAAAGTTTTTGACAGTATGTCAAACAAGACGGTGGTGACATGGAATTCGCTAATTGCAGGTTTGGTTAGAGACGGTGACTTGGAATTAGCTTTGAGAATCTTTGGTGAGATGCCAGAGAGTAATCTTGTATCTTGGAACACAATGATTGGTGCCATGGTTCAAGCAAGCATGTTTGAGGAAGCAATTGATTTGTTCAGGGAGATGCAAAACCAAGGGATTAAAGGAGATAAAGTGACAATGGTGGGTATTGCTTCTGCCTGTGGATATTTAGGAGCTCTTGATCTTGCTAAGTGGATCTATACTTACATCGAGAAAAATGACATTCACATTGACATGCAACTTGGCACGGCTTTGGTCGACATGTTTTCTAGATGTGGCGATCCTCTAAATGCTATGCGTGTTTTTGAAAATATGGAAAAATACGACGTGTCTGCCTGGACTGCAGCCATCAGAGTTAAGGCAGTGGAGGGAAATGCAAAAGGAGCGATTGAGCTTTTTAATGAGATGCTCAAACAAGATGTTAAAGCAGACGATTTTGTTTTTGTGGCACTATTGACAGCATGTAGTCATGCTGGATATGTGGACCAAGGGAGACAACTTTTTTGGTCAATGGAAAGAATCCACGGAGTAAGTCCTCAGATCGTCCACTATGGATGCATGGTTGATTTGCTTGGTCGAGCTGGGTTGTTGGAAGAAGCTTTTGATCTCATGAAAAGCATGCCAATGGAACCTAATGATGTTATATGGGGATCTTTTCTAGCAGCTTGTCGAAAACACAAAAATGTCAAATTTGCAAATTATGCAGATGAAAAGATAACTCAATTGGTCCCAGAAAAAGTTGGGATTCATGTGCTGCTATCCAATATCTATGCATCGGCTGGAAAATGGAATGATGTAGCAAGAGTGAGGCTGCAAATGAAAGAGAAAGGGTTCCAGAAAGTGGCTGGATCAAGCTCAATAGAAGTTCACGGACTGATTCGCGAGTTCACCTCTGGTGACGAATCACCCACTGAGAACAACCAAATTGGATTAATGCTACAGGAAATAAACTGTAGGCTAAGCCAGGTGGGGTATGTTCCTGATACAACCAATGTCTTCGTTGATGTTGATGAGCAGGAGAAAGAGCATTTGCTCAGCAGACATAGTGAAAAACTAGCCATGGCTTATGGATTAATCAATACCGGTAAAGGAATACCTATACGGGTAGTAAAAAATCTAAGAATGTGCTCTGATTGTCACTCATTTGCAAAATTAGTGTCAAAACTATACGGTAGGGAAATAACTGTTAGGGATAATAACAGGTATCATTTCTTCAAGGAAGGATTCTGTTCTTGTAGAGATTTTTGGTAG

Protein sequence

>Msa0187070

MATTTTLHQSSSLLSLPTTTQKPKNSSLQTCKTLIELKQLHCNMLKKGVFNINKLIAACVQMGTHESLNYALNAFKEDEGTKCSLYTCNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDKFTFPFLLSACSKIMAFCEGVQVHGMVVKMGLVKDLFVANSLIHFYAECGKVDLGRKVFDEMLERNVVSWTSLINGYSGVDMAKEAVCLFFEMVEAGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTKLGVKSNTLVVNALLDMYMKCGDMCAVREIFDEFSDKNLVMYNTIMTNYVQRGLAGEVLLVLDEMLQKGQRPDKVTMLSTIAACAQLGDLPVGKSSHAYVFRNGLESWDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGDLELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLFREMQNQGIKGDKVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKYDVSAWTAAIRVKAVEGNAKGAIELFNEMLKQDVKADDFVFVALLTACSHAGYVDQGRQLFWSMERIHGVSPQIVHYGCMVDLLGRAGLLEEAFDLMKSMPMEPNDVIWGSFLAACRKHKNVKFANYADEKITQLVPEKVGIHVLLSNIYASAGKWNDVARVRLQMKEKGFQKVAGSSSIEVHGLIREFTSGDESPTENNQIGLMLQEINCRLSQVGYVPDTTNVFVDVDEQEKEHLLSRHSEKLAMAYGLINTGKGIPIRVVKNLRMCSDCHSFAKLVSKLYGREITVRDNNRYHFFKEGFCSCRDFW*