AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0039420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0039420 MtrunA17_Chr1g0203511 95.045 222 8 2 1 221 35 254 2.12e-152 423
Msa0039420 MtrunA17_Chr6g0470661 67.234 235 59 5 3 221 2 234 2.20e-103 298
Msa0039420 MtrunA17_Chr6g0460501 49.068 161 70 3 19 171 17 173 7.55e-47 153
Msa0039420 MtrunA17_Chr3g0136801 54.639 97 44 0 75 171 2 98 2.76e-33 115
Msa0039420 MtrunA17_Chr3g0120151 38.542 96 59 0 76 171 35 130 4.97e-17 77.0
Msa0039420 MtrunA17_Chr6g0460431 53.333 60 28 0 110 169 27 86 1.00e-16 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0039420 AT3G48890.1 66.507 209 63 4 5 212 4 206 2.59e-90 265
Msa0039420 AT5G52240.1 61.991 221 79 3 3 221 2 219 1.62e-88 260
Msa0039420 AT5G52240.2 72.674 172 43 2 3 172 2 171 2.09e-86 253
Msa0039420 AT2G24940.1 50.515 97 48 0 75 171 2 98 1.51e-29 106
Msa0039420 AT4G14965.1 30.921 152 82 2 20 171 9 137 8.38e-17 77.0
Msa0039420 AT4G14965.2 39.759 83 50 0 76 158 42 124 1.67e-15 72.4

Find 100 sgRNAs with CRISPR-Local

Find 661 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCGTTTACTACGTCCTTTC+TGG 0.101868 1_1:+68998273 Msa0039420:CDS
ACCCTTGCTTATGGCTATTA+AGG 0.124798 1_1:+68998446 Msa0039420:CDS
CTCTTGGAAGTTGCGGGATT+GGG 0.149394 1_1:-68998328 None:intergenic
GATTTGACCGGTGATATTTC+TGG 0.252823 1_1:+69007610 Msa0039420:CDS
AGGCGATGATGGACTCCTTT+AGG 0.261253 1_1:-68998200 None:intergenic
ACCGGTGATATTTCTGGTCT+TGG 0.268409 1_1:+69007616 Msa0039420:CDS
GGCGATGATGGACTCCTTTA+GGG 0.276975 1_1:-68998199 None:intergenic
TACGTCCTTTCTGGTCTCTT+TGG 0.279840 1_1:+68998282 Msa0039420:CDS
AATGAATTGTGCATTGCTTT+AGG 0.287607 1_1:+69008212 Msa0039420:three_prime_UTR
ATTTGAGCTTGACGCGTTAC+AGG 0.301755 1_1:+69007642 Msa0039420:CDS
CCTCTTGGAAGTTGCGGGAT+TGG 0.303689 1_1:-68998329 None:intergenic
GGACTGGGAATACAAGTTTA+TGG 0.304869 1_1:+69007663 Msa0039420:CDS
CTCCTCCTCTTGGAAGTTGC+GGG 0.307440 1_1:-68998334 None:intergenic
ATTGCTTTAGGCTTTGTATA+AGG 0.316757 1_1:+69008224 Msa0039420:three_prime_UTR
GTGGATTCAGCTTCAGTAAC+TGG 0.323655 1_1:-69007718 None:intergenic
CCCTTGCTTATGGCTATTAA+GGG 0.325886 1_1:+68998447 Msa0039420:CDS
GGACCGTATGCTTTATTTGC+TGG 0.331470 1_1:+69007541 Msa0039420:CDS
TCATGATAAACCCTTGCTTA+TGG 0.362127 1_1:+68998437 Msa0039420:CDS
TTGCTTTAGGCTTTGTATAA+GGG 0.365443 1_1:+69008225 Msa0039420:three_prime_UTR
TTAGGCTTTGTATAAGGGTT+AGG 0.374113 1_1:+69008230 Msa0039420:three_prime_UTR
ATGACATTCGAGTCATATCT+TGG 0.380964 1_1:+69008093 Msa0039420:three_prime_UTR
AAAGCAATGCACAATTCATT+AGG 0.394703 1_1:-69008209 None:intergenic
TTATCTGCCTCAACATTTGA+AGG 0.394915 1_1:-69007835 None:intergenic
AGCTTGACGCGTTACAGGAC+TGG 0.403993 1_1:+69007647 Msa0039420:CDS
GTGATTTCACCTAGCTGAAC+AGG 0.406413 1_1:-68998381 None:intergenic
GACCACTTTCTTCACCATCT+TGG 0.410349 1_1:+68998239 Msa0039420:CDS
AATGTTTATTACATAAATAA+TGG 0.410929 1_1:+69008060 Msa0039420:three_prime_UTR
TCTTGGAAGTTGCGGGATTG+GGG 0.417269 1_1:-68998327 None:intergenic
TGTAACGCGTCAAGCTCAAA+TGG 0.428078 1_1:-69007640 None:intergenic
AGCATTGCGTTATTCAATCA+AGG 0.430578 1_1:-69008141 None:intergenic
GTGGTGAATTGAAAATTTAG+TGG 0.436624 1_1:+69008271 Msa0039420:three_prime_UTR
GAATCCACGGGTGAAGCATC+AGG 0.447705 1_1:+69007733 Msa0039420:CDS
CGATGGCCGGCGTTCAGCTG+TGG 0.449798 1_1:+68998172 Msa0039420:exon
TAGGAGGGAACGGAAGGGCT+TGG 0.461649 1_1:+69008249 Msa0039420:three_prime_UTR
GGCTTTGTATAAGGGTTAGG+AGG 0.465084 1_1:+69008233 Msa0039420:three_prime_UTR
TAGACCGGTGTAGGCGATGA+TGG 0.470054 1_1:-68998211 None:intergenic
ATAAGCCTTGAGCTCTTCTT+CGG 0.471949 1_1:-68998403 None:intergenic
GTTTATGGAGAAGTATGTTA+AGG 0.473963 1_1:+69007678 Msa0039420:CDS
GCAAATCAACAGTGCATAAG+TGG 0.476063 1_1:-69007955 None:intergenic
ACCAGAAAGGACGTAGTAAA+CGG 0.488478 1_1:-68998274 None:intergenic
CCTCCTCCTCTTGGAAGTTG+CGG 0.490295 1_1:-68998335 None:intergenic
TTTAGTGGATTTCTTCTCCC+CGG 0.503688 1_1:+69008286 Msa0039420:three_prime_UTR
GTATGCTTTATTTGCTGGCA+AGG 0.504997 1_1:+69007546 Msa0039420:CDS
GAGAGAGAGACTGAAGTAGG+AGG 0.517331 1_1:-68998112 None:intergenic
GAGGGAACGGAAGGGCTTGG+TGG 0.518739 1_1:+69008252 Msa0039420:three_prime_UTR
TATCTGCCTCAACATTTGAA+GGG 0.520292 1_1:-69007834 None:intergenic
GGCAAATAGAAGAGCCAAGA+TGG 0.520312 1_1:-68998253 None:intergenic
TGACATTCGAGTCATATCTT+GGG 0.520384 1_1:+69008094 Msa0039420:three_prime_UTR
AAGGGTTAGGAGGGAACGGA+AGG 0.521051 1_1:+69008243 Msa0039420:three_prime_UTR
GCTTGACGCGTTACAGGACT+GGG 0.526300 1_1:+69007648 Msa0039420:CDS
GAAAGTGGTCGGAGATAGAC+CGG 0.532113 1_1:-68998226 None:intergenic
AGGAGGAATTTGTAGACTTG+TGG 0.536007 1_1:-68998095 None:intergenic
TCTATGATGTCTCTCAGAGC+AGG 0.537470 1_1:+68998475 Msa0039420:CDS
TGATAAGTAATGAAATATAG+TGG 0.539944 1_1:+69007998 Msa0039420:three_prime_UTR
ATCAACAGTGCATAAGTGGC+AGG 0.540032 1_1:-69007951 None:intergenic
TTTGATCCGCCATCTTCAGT+TGG 0.541409 1_1:-69007784 None:intergenic
TCATATCTTGGGCTGAGTAG+TGG 0.544652 1_1:+69008105 Msa0039420:three_prime_UTR
GATGGCCGGCGTTCAGCTGT+GGG 0.545916 1_1:+68998173 Msa0039420:exon
GTATAAGGGTTAGGAGGGAA+CGG 0.548244 1_1:+69008239 Msa0039420:three_prime_UTR
GAAGAGCTCAAGGCTTATGA+TGG 0.549967 1_1:+68998408 Msa0039420:CDS
TTTGATGAGAAAGATTTGAC+CGG 0.550185 1_1:+69007598 Msa0039420:CDS
GCTTTGTATAAGGGTTAGGA+GGG 0.551553 1_1:+69008234 Msa0039420:three_prime_UTR
CAACTTCCAAGAGGAGGAGG+AGG 0.556609 1_1:+68998338 Msa0039420:CDS
ATCTGCCTCAACATTTGAAG+GGG 0.560772 1_1:-69007833 None:intergenic
ACACAACAACGAGCGATGGC+CGG 0.561098 1_1:+68998159 Msa0039420:exon
GCTGTTAATCCAACTGAAGA+TGG 0.564157 1_1:+69007775 Msa0039420:CDS
TCAGCTGTGGGAAACCCTAA+AGG 0.566475 1_1:+68998185 Msa0039420:CDS
GTAACGCGTCAAGCTCAAAT+GGG 0.568003 1_1:-69007639 None:intergenic
AGTAGCCAAAGAGACCAGAA+AGG 0.568870 1_1:-68998287 None:intergenic
CCGCAACTTCCAAGAGGAGG+AGG 0.571017 1_1:+68998335 Msa0039420:CDS
CTTGGAAGTTGCGGGATTGG+GGG 0.575348 1_1:-68998326 None:intergenic
TTGCCAGCAAATAAAGCATA+CGG 0.582093 1_1:-69007544 None:intergenic
ATGGAGAAGTATGTTAAGGT+CGG 0.585025 1_1:+69007682 Msa0039420:CDS
GGTCGGAGATAGACCGGTGT+AGG 0.586223 1_1:-68998220 None:intergenic
ACCCTTAATAGCCATAAGCA+AGG 0.587630 1_1:-68998448 None:intergenic
AATAAAGCATACGGTCCACC+CGG 0.588408 1_1:-69007535 None:intergenic
GTTACTGAAGCTGAATCCAC+GGG 0.589713 1_1:+69007721 Msa0039420:CDS
TGGTTTGTTTGTCTACACAC+TGG 0.597644 1_1:-68998075 None:intergenic
CCCTTAATAGCCATAAGCAA+GGG 0.597837 1_1:-68998447 None:intergenic
GGTTTCCCACAGCTGAACGC+CGG 0.599948 1_1:-68998178 None:intergenic
AGTTACTGAAGCTGAATCCA+CGG 0.600398 1_1:+69007720 Msa0039420:CDS
GAGTCCATCATCGCCTACAC+CGG 0.603823 1_1:+68998207 Msa0039420:CDS
TGAACAGGTGGTCGGAGAGG+TGG 0.609555 1_1:-68998366 None:intergenic
CACCTAGCTGAACAGGTGGT+CGG 0.610497 1_1:-68998374 None:intergenic
CTCCGACCACCTGTTCAGCT+AGG 0.610888 1_1:+68998372 Msa0039420:CDS
AGCTGAACAGGTGGTCGGAG+AGG 0.612379 1_1:-68998369 None:intergenic
ACCTGCAGCTGTTAAAAGTG+AGG 0.614328 1_1:+69007807 Msa0039420:CDS
ATCCCGCAACTTCCAAGAGG+AGG 0.616485 1_1:+68998332 Msa0039420:CDS
AGCCAAGATGGTGAAGAAAG+TGG 0.619359 1_1:-68998241 None:intergenic
GGAAACCCCTTCAAATGTTG+AGG 0.619610 1_1:+69007828 Msa0039420:CDS
AGGGTTAGGAGGGAACGGAA+GGG 0.627173 1_1:+69008244 Msa0039420:three_prime_UTR
ACACACACAACAACGAGCGA+TGG 0.631266 1_1:+68998155 Msa0039420:exon
AATCACCGAAGAAGAGCTCA+AGG 0.634309 1_1:+68998398 Msa0039420:CDS
AAGATGGTGAAGAAAGTGGT+CGG 0.644524 1_1:-68998237 None:intergenic
AGATCCTGATGCTTCACCCG+TGG 0.646182 1_1:-69007737 None:intergenic
TAAGTAATGAAATATAGTGG+TGG 0.646984 1_1:+69008001 Msa0039420:three_prime_UTR
GCCAAGACCAGAAATATCAC+CGG 0.647612 1_1:-69007617 None:intergenic
GTTAATCCAACTGAAGATGG+CGG 0.680061 1_1:+69007778 Msa0039420:CDS
ATTTCACCTAGCTGAACAGG+TGG 0.686884 1_1:-68998378 None:intergenic
CCAATCCCGCAACTTCCAAG+AGG 0.696455 1_1:+68998329 Msa0039420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTATTACTAATGTTTT+GGG - chr1_1:69002288-69002307 None:intergenic 10.0%
!!! TAATATTATTACTAATGTTT+TGG - chr1_1:69002289-69002308 None:intergenic 10.0%
!!! ATCTTATTTTTATTTTAAGA+AGG - chr1_1:69002617-69002636 None:intergenic 10.0%
!! TATTAAATATCATCTAAATT+AGG + chr1_1:69004384-69004403 Msa0039420:intron 10.0%
!! ATTAAATATAAAAGTTAGAT+GGG + chr1_1:69004530-69004549 Msa0039420:intron 10.0%
!! AAAAGTAAAATTAGATTATA+TGG + chr1_1:69004575-69004594 Msa0039420:intron 10.0%
!! AAAGTAAAATTAGATTATAT+GGG + chr1_1:69004576-69004595 Msa0039420:intron 10.0%
!!! AATTTTACTTTTATGTTTTA+TGG - chr1_1:69004614-69004633 None:intergenic 10.0%
!! AAAAGTAAAATTAGATTATA+TGG + chr1_1:69004575-69004594 Msa0039420:intron 10.0%
!! AAAGTAAAATTAGATTATAT+GGG + chr1_1:69004576-69004595 Msa0039420:intron 10.0%
!!! AATTTTACTTTTATGTTTTA+TGG - chr1_1:69004614-69004633 None:intergenic 10.0%
!! AAAAGTAAAATTAGATTATA+TGG + chr1_1:69004575-69004594 Msa0039420:intron 10.0%
!! AAAGTAAAATTAGATTATAT+GGG + chr1_1:69004576-69004595 Msa0039420:intron 10.0%
!!! AATTTTACTTTTATGTTTTA+TGG - chr1_1:69004614-69004633 None:intergenic 10.0%
!! AAAAGTAAAATTAGATTATA+TGG + chr1_1:69004575-69004594 Msa0039420:intron 10.0%
!! AAAGTAAAATTAGATTATAT+GGG + chr1_1:69004576-69004595 Msa0039420:intron 10.0%
!!! AATTTTACTTTTATGTTTTA+TGG - chr1_1:69004614-69004633 None:intergenic 10.0%
!! AAAATAAAAATTAGATTAGA+TGG + chr1_1:69004911-69004930 Msa0039420:intron 10.0%
!! AAATAAAAATTAGATTAGAT+GGG + chr1_1:69004912-69004931 Msa0039420:intron 10.0%
!! AAAATAAAAATTAGATTAGA+TGG + chr1_1:69004911-69004930 Msa0039420:intron 10.0%
!! AAATAAAAATTAGATTAGAT+GGG + chr1_1:69004912-69004931 Msa0039420:intron 10.0%
!!! TTTTTTTAATAGTCTATATT+TGG - chr1_1:69005626-69005645 None:intergenic 10.0%
!! AATGTTTATTACATAAATAA+TGG + chr1_1:69008060-69008079 Msa0039420:three_prime_UTR 10.0%
!! TTTATAAGAAAAACAATATC+TGG - chr1_1:69000137-69000156 None:intergenic 15.0%
!!! TTTTTCTTATAAAAACACAA+GGG + chr1_1:69000144-69000163 Msa0039420:intron 15.0%
!!! ATTACTTTTCGTTATTTAAT+TGG - chr1_1:69000422-69000441 None:intergenic 15.0%
!! AATTAAATAACGAAAAGTAA+TGG + chr1_1:69000421-69000440 Msa0039420:intron 15.0%
!!! TTAAAAATCGAAAAGTATTT+GGG - chr1_1:69000619-69000638 None:intergenic 15.0%
!! TCAATTAATTATGTTAATAC+AGG - chr1_1:69000812-69000831 None:intergenic 15.0%
!!! ATTTCTCATTTAAAGATTTT+TGG - chr1_1:69001478-69001497 None:intergenic 15.0%
!! ATCTTTAAATGAGAAATATT+TGG + chr1_1:69001481-69001500 Msa0039420:intron 15.0%
!!! ATTTTCTTTATAGTATAATC+AGG + chr1_1:69001787-69001806 Msa0039420:intron 15.0%
!! TGCACAAATAATTAAATTAA+GGG - chr1_1:69001821-69001840 None:intergenic 15.0%
!! TTGCACAAATAATTAAATTA+AGG - chr1_1:69001822-69001841 None:intergenic 15.0%
!! TGAAATTGAATGTAATTTAA+TGG - chr1_1:69002202-69002221 None:intergenic 15.0%
!!! CATCTAACTTTTATATTTAA+TGG - chr1_1:69004531-69004550 None:intergenic 15.0%
!! CATTAAATATAAAAGTTAGA+TGG + chr1_1:69004529-69004548 Msa0039420:intron 15.0%
!! TTAAATATAAAAGTTAGATG+GGG + chr1_1:69004531-69004550 Msa0039420:intron 15.0%
!!! AATTTTACTTTTATGCTTTA+TGG - chr1_1:69004567-69004586 None:intergenic 15.0%
!! AAGTAAAATTAGATTATATG+GGG + chr1_1:69004577-69004596 Msa0039420:intron 15.0%
!! AAGTAAAATTAGATTATATG+GGG + chr1_1:69004577-69004596 Msa0039420:intron 15.0%
!! AAGTAAAATTAGATTATATG+GGG + chr1_1:69004577-69004596 Msa0039420:intron 15.0%
!! AAGTAAAATTAGATTATATG+GGG + chr1_1:69004577-69004596 Msa0039420:intron 15.0%
!! AAAAGTAAAATTAGATTAGA+TGG + chr1_1:69004863-69004882 Msa0039420:intron 15.0%
!! AAAGTAAAATTAGATTAGAT+GGG + chr1_1:69004864-69004883 Msa0039420:intron 15.0%
!!! ATTTTTATTTTCATGCTTAT+TGG - chr1_1:69004902-69004921 None:intergenic 15.0%
!! AATAAAAATTAGATTAGATG+GGG + chr1_1:69004913-69004932 Msa0039420:intron 15.0%
!! AATAAAAATTAGATTAGATG+GGG + chr1_1:69004913-69004932 Msa0039420:intron 15.0%
!!! ATTGTTATTATTATTATTGG+AGG - chr1_1:69004995-69005014 None:intergenic 15.0%
!! ACAACAATAGTAAAATTATT+GGG + chr1_1:69005688-69005707 Msa0039420:intron 15.0%
!!! TCCAAAAATCTTATTTTTTA+TGG + chr1_1:69005712-69005731 Msa0039420:intron 15.0%
!!! CCAAAAATCTTATTTTTTAT+GGG + chr1_1:69005713-69005732 Msa0039420:intron 15.0%
!!! ACATTTTCTCAAATTATTAT+TGG + chr1_1:69006466-69006485 Msa0039420:intron 15.0%
!! TATTACTTTATTCTGATATA+AGG + chr1_1:69006635-69006654 Msa0039420:intron 15.0%
!! AATATACACATAATAGTTAA+TGG - chr1_1:69006685-69006704 None:intergenic 15.0%
!!! TTATATTCTTGTCTAAAGTT+TGG + chr1_1:68998575-68998594 Msa0039420:intron 20.0%
!!! TATATTCTTGTCTAAAGTTT+GGG + chr1_1:68998576-68998595 Msa0039420:intron 20.0%
!! TGTAAAATATGAACTTATGA+AGG + chr1_1:68998758-68998777 Msa0039420:intron 20.0%
!! GTAAAATATGAACTTATGAA+GGG + chr1_1:68998759-68998778 Msa0039420:intron 20.0%
!! ATTACATGTTCTCTATTTAT+AGG + chr1_1:68998864-68998883 Msa0039420:intron 20.0%
!! AAGAACACTTAATATTGAAA+AGG - chr1_1:68999865-68999884 None:intergenic 20.0%
!! GTATACTAAAAATGGTATAT+TGG - chr1_1:68999970-68999989 None:intergenic 20.0%
!! CAAATTGAGTATACTAAAAA+TGG - chr1_1:68999978-68999997 None:intergenic 20.0%
!!! AATTTGAAATGAAAGATCTA+GGG - chr1_1:69000025-69000044 None:intergenic 20.0%
!!! GTTGATGATTTAAATATCAT+TGG - chr1_1:69000092-69000111 None:intergenic 20.0%
!!! GTTTTTCTTATAAAAACACA+AGG + chr1_1:69000143-69000162 Msa0039420:intron 20.0%
!! TAATCTTGATATGTATCTTA+TGG - chr1_1:69000384-69000403 None:intergenic 20.0%
!! AAATGAAATTGTAAGATACA+AGG - chr1_1:69000522-69000541 None:intergenic 20.0%
!!! CTTAAAAATCGAAAAGTATT+TGG - chr1_1:69000620-69000639 None:intergenic 20.0%
!!! TTCATTTACTGATTTGAAAA+GGG - chr1_1:69001131-69001150 None:intergenic 20.0%
!!! ATTCATTTACTGATTTGAAA+AGG - chr1_1:69001132-69001151 None:intergenic 20.0%
!! AAGAATATAGTACATTTACA+AGG - chr1_1:69001175-69001194 None:intergenic 20.0%
!! AATAATTATTGCATGTCAAT+TGG - chr1_1:69001727-69001746 None:intergenic 20.0%
!! TTTAATGACATATATAGTCA+AGG - chr1_1:69002354-69002373 None:intergenic 20.0%
!!! AACAAATTTCTCTTTGATTT+CGG + chr1_1:69002378-69002397 Msa0039420:intron 20.0%
!!! TATTTTAAGAAGGTTAGAAA+TGG - chr1_1:69002607-69002626 None:intergenic 20.0%
!! AATAAGATTAAAGAAAAGAG+AGG + chr1_1:69002629-69002648 Msa0039420:intron 20.0%
!! ATAAGATTAAAGAAAAGAGA+GGG + chr1_1:69002630-69002649 Msa0039420:intron 20.0%
!! TATTGAAGGAGAATTTAATA+TGG - chr1_1:69002793-69002812 None:intergenic 20.0%
!! ACAAAATTAAAGCAAGATTT+GGG - chr1_1:69003553-69003572 None:intergenic 20.0%
!!! TTCAAAATTTTAAGCATAAC+TGG - chr1_1:69003782-69003801 None:intergenic 20.0%
!!! TGTTTAATTACCTTTTGTTT+TGG - chr1_1:69003964-69003983 None:intergenic 20.0%
!!! TTTTACACATACTTACAAAA+TGG - chr1_1:69004121-69004140 None:intergenic 20.0%
!! AAAAATTATGAATGAAGATG+AGG + chr1_1:69004157-69004176 Msa0039420:intron 20.0%
!!! ATTTACAATATTGATTCATG+AGG - chr1_1:69004494-69004513 None:intergenic 20.0%
!! TCATGAATCAATATTGTAAA+TGG + chr1_1:69004493-69004512 Msa0039420:intron 20.0%
!! CATGAATCAATATTGTAAAT+GGG + chr1_1:69004494-69004513 Msa0039420:intron 20.0%
!! ATGAATCAATATTGTAAATG+GGG + chr1_1:69004495-69004514 Msa0039420:intron 20.0%
!!! CTAACTTTTATATTTAATGG+AGG - chr1_1:69004528-69004547 None:intergenic 20.0%
!!! TTTACTTTTATGTTTTATGG+AGG - chr1_1:69004611-69004630 None:intergenic 20.0%
!!! TTTACTTTTATGTTTTATGG+AGG - chr1_1:69004611-69004630 None:intergenic 20.0%
!!! TTTACTTTTATGTTTTATGG+AGG - chr1_1:69004611-69004630 None:intergenic 20.0%
!!! TTTACTTTTATGTTTTATGG+AGG - chr1_1:69004611-69004630 None:intergenic 20.0%
!!! ATTTTTATTTTCATGTCTGT+TGG - chr1_1:69004950-69004969 None:intergenic 20.0%
!! AATATTATTATTATATGCCC+CGG - chr1_1:69005069-69005088 None:intergenic 20.0%
!! TGTAAAATATGAACTTATGA+AGG + chr1_1:68998758-68998777 Msa0039420:intron 20.0%
!! GTAAAATATGAACTTATGAA+GGG + chr1_1:68998759-68998778 Msa0039420:intron 20.0%
!! ATTACATGTTCTCTATTTAT+AGG + chr1_1:68998864-68998883 Msa0039420:intron 20.0%
!!! TTTTGTGTCATAATTGATTT+TGG + chr1_1:69005443-69005462 Msa0039420:intron 20.0%
!!! ATAGAAAAAAAAACCCATTT+TGG - chr1_1:69005481-69005500 None:intergenic 20.0%
!! CACAACAATAGTAAAATTAT+TGG + chr1_1:69005687-69005706 Msa0039420:intron 20.0%
!!! CCCATAAAAAATAAGATTTT+TGG - chr1_1:69005716-69005735 None:intergenic 20.0%
!!! AATATTAAAAGGTATGTGAA+AGG + chr1_1:69005938-69005957 Msa0039420:intron 20.0%
!! AAAGTAAAGTGATTTATGTT+TGG + chr1_1:69006228-69006247 Msa0039420:intron 20.0%
!! TACACTAAGTTTATGATATA+AGG + chr1_1:69006602-69006621 Msa0039420:intron 20.0%
!!! TTTTGATAATTATTTGTCCA+TGG + chr1_1:69006659-69006678 Msa0039420:intron 20.0%
!! AATAATATGTTTATCCAAAC+AGG + chr1_1:69006951-69006970 Msa0039420:intron 20.0%
!! TCTAACTTGAAGTTAAAATT+TGG + chr1_1:69007226-69007245 Msa0039420:intron 20.0%
!! TGATAAGTAATGAAATATAG+TGG + chr1_1:69007998-69008017 Msa0039420:three_prime_UTR 20.0%
! AAACAGAAGCTAAGAAAAAA+GGG - chr1_1:68998511-68998530 None:intergenic 25.0%
! AAAACAGAAGCTAAGAAAAA+AGG - chr1_1:68998512-68998531 None:intergenic 25.0%
! TAATTATGACTTCTGCAAAA+GGG - chr1_1:68998551-68998570 None:intergenic 25.0%
! TTAATTATGACTTCTGCAAA+AGG - chr1_1:68998552-68998571 None:intergenic 25.0%
! AGTGAAAAGTGATTTATGTT+TGG + chr1_1:68998689-68998708 Msa0039420:intron 25.0%
! ATAAATCACTTCTATCGTAA+AGG - chr1_1:68998718-68998737 None:intergenic 25.0%
! TCTCTATTTATAGGAAGAAA+AGG + chr1_1:68998873-68998892 Msa0039420:intron 25.0%
! AAAAACATAATTGAGCTTAC+AGG + chr1_1:68998911-68998930 Msa0039420:intron 25.0%
!! ATTAAGGTTTTTATCCCAAT+GGG - chr1_1:68999042-68999061 None:intergenic 25.0%
!! TATTAAGGTTTTTATCCCAA+TGG - chr1_1:68999043-68999062 None:intergenic 25.0%
! TTGGGATAAAAACCTTAATA+AGG + chr1_1:68999043-68999062 Msa0039420:intron 25.0%
! TGGGATAAAAACCTTAATAA+GGG + chr1_1:68999044-68999063 Msa0039420:intron 25.0%
!! AAGAAGCACATACAAAATAT+TGG - chr1_1:68999144-68999163 None:intergenic 25.0%
! TTGTCTTCATACAATATTGT+TGG + chr1_1:68999348-68999367 Msa0039420:intron 25.0%
! CATATATTTCGATATATACG+AGG - chr1_1:68999663-68999682 None:intergenic 25.0%
! AGTGTTAAAAAGGTTTAACA+TGG - chr1_1:68999922-68999941 None:intergenic 25.0%
! TATACTCAATTTGTAAACCA+AGG + chr1_1:68999985-69000004 Msa0039420:intron 25.0%
!! GAATTTGAAATGAAAGATCT+AGG - chr1_1:69000026-69000045 None:intergenic 25.0%
! AGTGAATATTTGCTTAAAGA+AGG - chr1_1:69000191-69000210 None:intergenic 25.0%
!! TTATATGGATTGAAACAATC+CGG - chr1_1:69000236-69000255 None:intergenic 25.0%
! AAGTTGCAAAGATCATTATA+TGG - chr1_1:69000251-69000270 None:intergenic 25.0%
! TTAATTGCATACATTTCTCT+TGG + chr1_1:69000269-69000288 Msa0039420:intron 25.0%
! ATATACATGAAAATACCAGA+AGG - chr1_1:69000320-69000339 None:intergenic 25.0%
! GTTGTTACTGCTTATTTATA+TGG - chr1_1:69000359-69000378 None:intergenic 25.0%
! AATGTCAAAATAGACATGAT+TGG - chr1_1:69000682-69000701 None:intergenic 25.0%
! ATTTGTAATTTCACATGCAA+TGG + chr1_1:69000736-69000755 Msa0039420:intron 25.0%
! CATCAATATTTATGTCCTTT+CGG + chr1_1:69000774-69000793 Msa0039420:intron 25.0%
! ATGTTAATACAGGAAATTTG+TGG - chr1_1:69000802-69000821 None:intergenic 25.0%
! AAAAAGAAAAGGAACAGAAA+AGG - chr1_1:69000975-69000994 None:intergenic 25.0%
!! TTTCTGTTCCTTTTCTTTTT+CGG + chr1_1:69000975-69000994 Msa0039420:intron 25.0%
! TTCAAATCAGTAAATGAATC+TGG + chr1_1:69001133-69001152 Msa0039420:intron 25.0%
! TCTTCCCATGATTTATTATA+TGG + chr1_1:69001202-69001221 Msa0039420:intron 25.0%
! GGATCCATATAATAAATCAT+GGG - chr1_1:69001209-69001228 None:intergenic 25.0%
! TGGATCCATATAATAAATCA+TGG - chr1_1:69001210-69001229 None:intergenic 25.0%
! TGTACCACATTTATTACATT+TGG - chr1_1:69001230-69001249 None:intergenic 25.0%
! CATTGGAAAATGAAATAACA+TGG - chr1_1:69001255-69001274 None:intergenic 25.0%
!!! CATGTTATTTCATTTTCCAA+TGG + chr1_1:69001253-69001272 Msa0039420:intron 25.0%
!! AGCTTAGTTCTCATTATTAA+AGG + chr1_1:69001613-69001632 Msa0039420:intron 25.0%
! TTAATAACAAAACATTCACC+AGG - chr1_1:69002018-69002037 None:intergenic 25.0%
!!! AAAATAGTTGAAAGTACTCA+TGG - chr1_1:69002108-69002127 None:intergenic 25.0%
! TATGTATAATGTAATCCAGA+AGG + chr1_1:69002228-69002247 Msa0039420:intron 25.0%
! TGTTTATTACACCTTTAGTA+GGG + chr1_1:69002499-69002518 Msa0039420:intron 25.0%
! TAAAAGATACAAAGAATCTG+TGG - chr1_1:69002892-69002911 None:intergenic 25.0%
!! TATCTTTTACATAGATACTC+TGG + chr1_1:69002903-69002922 Msa0039420:intron 25.0%
! ATTTACTGAATACTCTGATT+TGG - chr1_1:69003309-69003328 None:intergenic 25.0%
!! ATTGCACAATTAGAATTTTG+TGG - chr1_1:69003425-69003444 None:intergenic 25.0%
!!! CAACAACAGTTTTATAATCT+TGG + chr1_1:69003471-69003490 Msa0039420:intron 25.0%
! GACAAAATTAAAGCAAGATT+TGG - chr1_1:69003554-69003573 None:intergenic 25.0%
!!! TTAATTACCTTTTGTTTTGG+TGG - chr1_1:69003961-69003980 None:intergenic 25.0%
! AAACAAGCTAAGACTAATAA+TGG + chr1_1:69003979-69003998 Msa0039420:intron 25.0%
!! TTCTCCTATTTCTTCAATAA+GGG + chr1_1:69004035-69004054 Msa0039420:intron 25.0%
!! ATGAAGATGAGGTATTTATA+AGG + chr1_1:69004168-69004187 Msa0039420:intron 25.0%
!! GTTTTTAACGGTAACAATAA+TGG - chr1_1:69004212-69004231 None:intergenic 25.0%
! ATCATGAACAGTAAAATCAA+CGG - chr1_1:69004312-69004331 None:intergenic 25.0%
!!! TTTACTTTTATGCTTTATGG+AGG - chr1_1:69004564-69004583 None:intergenic 25.0%
!!! TTTATTTTCATGCTTATTGG+AGG - chr1_1:69004899-69004918 None:intergenic 25.0%
!! AATTGTCAGTTTTCTATAAC+CGG + chr1_1:69005047-69005066 Msa0039420:intron 25.0%
! TCTCTATTTATAGGAAGAAA+AGG + chr1_1:68998873-68998892 Msa0039420:intron 25.0%
! AAAAACATAATTGAGCTTAC+AGG + chr1_1:68998911-68998930 Msa0039420:intron 25.0%
! AACTGTTATAATAATGATGG+TGG - chr1_1:69005417-69005436 None:intergenic 25.0%
! CCAAACTGTTATAATAATGA+TGG - chr1_1:69005420-69005439 None:intergenic 25.0%
! CCATCATTATTATAACAGTT+TGG + chr1_1:69005417-69005436 Msa0039420:intron 25.0%
! TCAAGGATAAAATAGACAAA+TGG + chr1_1:69005973-69005992 Msa0039420:intron 25.0%
! CAAGGATAAAATAGACAAAT+GGG + chr1_1:69005974-69005993 Msa0039420:intron 25.0%
! CAAAATTAATTATGCTCGAA+AGG + chr1_1:69006340-69006359 Msa0039420:intron 25.0%
! TCATAATTCAGTGTAATCAT+AGG - chr1_1:69006447-69006466 None:intergenic 25.0%
! TCTCAAATTATTATTGGTGT+CGG + chr1_1:69006472-69006491 Msa0039420:intron 25.0%
!!! AGAATTGATTTTGACATGTT+TGG - chr1_1:69006537-69006556 None:intergenic 25.0%
! TCATAAACTTAGTGTATGTT+TGG - chr1_1:69006598-69006617 None:intergenic 25.0%
! TATGTGTATATTTGCATGTT+TGG + chr1_1:69006693-69006712 Msa0039420:intron 25.0%
! TAAGACTTTGTATCTACTTA+GGG - chr1_1:69006977-69006996 None:intergenic 25.0%
! ATAAGACTTTGTATCTACTT+AGG - chr1_1:69006978-69006997 None:intergenic 25.0%
! AAAACAAATGAAACACCAAA+GGG - chr1_1:69007036-69007055 None:intergenic 25.0%
! AAAAACAAATGAAACACCAA+AGG - chr1_1:69007037-69007056 None:intergenic 25.0%
!!! TATGCTTTAAAGTGTATGTT+TGG + chr1_1:69007110-69007129 Msa0039420:intron 25.0%
! CTAGTCAAAATAGATTATTG+AGG + chr1_1:69007147-69007166 Msa0039420:intron 25.0%
!! AGAATTGATTCTAACATGTT+TGG + chr1_1:69007173-69007192 Msa0039420:intron 25.0%
!!! AAGTTAAAATTTGGAGCTTT+TGG + chr1_1:69007235-69007254 Msa0039420:intron 25.0%
! GAATACTTTCATACAAAAGT+GGG - chr1_1:69007300-69007319 None:intergenic 25.0%
! TGAATACTTTCATACAAAAG+TGG - chr1_1:69007301-69007320 None:intergenic 25.0%
!!! TTGATTTGTAAGATTGATTC+TGG - chr1_1:69007342-69007361 None:intergenic 25.0%
! GATCATAATAAATAGAGAGA+GGG - chr1_1:69007483-69007502 None:intergenic 25.0%
! AGATCATAATAAATAGAGAG+AGG - chr1_1:69007484-69007503 None:intergenic 25.0%
! TAAGTAATGAAATATAGTGG+TGG + chr1_1:69008001-69008020 Msa0039420:three_prime_UTR 25.0%
TGTAATGCAAAGAAAGGATA+CGG - chr1_1:68998850-68998869 None:intergenic 30.0%
AGAACATGTAATGCAAAGAA+AGG - chr1_1:68998856-68998875 None:intergenic 30.0%
GAGTGTTATAATAATGATGG+TGG - chr1_1:68998963-68998982 None:intergenic 30.0%
! TCCTAATAAGGTTTTTAACG+AGG - chr1_1:68999015-68999034 None:intergenic 30.0%
CTTATTAGGAAAAACCCATT+GGG + chr1_1:68999025-68999044 Msa0039420:intron 30.0%
TTTAAAGAAGAACGTGTGTT+TGG - chr1_1:68999101-68999120 None:intergenic 30.0%
AAACACACGTTCTTCTTTAA+AGG + chr1_1:68999100-68999119 Msa0039420:intron 30.0%
ACTTGAAAGAAACAAAGAAG+TGG - chr1_1:68999238-68999257 None:intergenic 30.0%
! TGTGTTACTCAAATGAAAGA+AGG - chr1_1:68999321-68999340 None:intergenic 30.0%
ACTGGATATGTATTCACATA+TGG - chr1_1:68999537-68999556 None:intergenic 30.0%
CATAATGCTAAATCACAAAC+TGG - chr1_1:68999555-68999574 None:intergenic 30.0%
GTTTGTGATTTAGCATTATG+TGG + chr1_1:68999555-68999574 Msa0039420:intron 30.0%
! AATACAAAACCAGTTTTGCT+TGG - chr1_1:68999609-68999628 None:intergenic 30.0%
GAAGATAATGAAAAGGATCT+TGG - chr1_1:68999825-68999844 None:intergenic 30.0%
! TCCTTTTCATTATCTTCCTT+AGG + chr1_1:68999828-68999847 Msa0039420:intron 30.0%
ACCTAAGGAAGATAATGAAA+AGG - chr1_1:68999832-68999851 None:intergenic 30.0%
TTATCTTCCTTAGGTCTAAA+AGG + chr1_1:68999837-68999856 Msa0039420:intron 30.0%
AAAAAGGTTTAACATGGACA+AGG - chr1_1:68999916-68999935 None:intergenic 30.0%
!! ATACAGAGAGAGTGTTAAAA+AGG - chr1_1:68999932-68999951 None:intergenic 30.0%
ATAAAAACACAAGGGCAAAT+AGG + chr1_1:69000152-69000171 Msa0039420:intron 30.0%
! TATATGGATTGAAACAATCC+GGG - chr1_1:69000235-69000254 None:intergenic 30.0%
!! AAAAGTATTTGGGCCTATTA+TGG - chr1_1:69000609-69000628 None:intergenic 30.0%
ATAGACATGATTGGAAAAAC+TGG - chr1_1:69000673-69000692 None:intergenic 30.0%
TTGACATTCATTAACAGATC+TGG + chr1_1:69000694-69000713 Msa0039420:intron 30.0%
TGACATTCATTAACAGATCT+GGG + chr1_1:69000695-69000714 Msa0039420:intron 30.0%
! TTCTGTTCCTTTTCTTTTTC+GGG + chr1_1:69000976-69000995 Msa0039420:intron 30.0%
AAAAATCCCCGAAAAAGAAA+AGG - chr1_1:69000986-69001005 None:intergenic 30.0%
!!! TTTTTGTCTTTGGAACCTAT+AGG + chr1_1:69001001-69001020 Msa0039420:intron 30.0%
GGATCCAAATGTAATAAATG+TGG + chr1_1:69001223-69001242 Msa0039420:intron 30.0%
! GAAACAAATTTTCCAACACT+TGG - chr1_1:69001292-69001311 None:intergenic 30.0%
! TTTAACAGGTGATGTTTTTC+AGG - chr1_1:69001341-69001360 None:intergenic 30.0%
TGAAAAACATCACCTGTTAA+AGG + chr1_1:69001340-69001359 Msa0039420:intron 30.0%
AGATATCTTGAACCTTTAAC+AGG - chr1_1:69001355-69001374 None:intergenic 30.0%
AGAAGGTTAGGAATATATGT+GGG - chr1_1:69001400-69001419 None:intergenic 30.0%
AAGAAGGTTAGGAATATATG+TGG - chr1_1:69001401-69001420 None:intergenic 30.0%
TATATTCCTAACCTTCTTTG+AGG + chr1_1:69001403-69001422 Msa0039420:intron 30.0%
!! TTATCAACTTGCTATTGGTA+AGG - chr1_1:69001509-69001528 None:intergenic 30.0%
!! TTACCAATAGCAAGTTGATA+AGG + chr1_1:69001508-69001527 Msa0039420:intron 30.0%
!! TACCAATAGCAAGTTGATAA+GGG + chr1_1:69001509-69001528 Msa0039420:intron 30.0%
TGATTCAGATGAAAATTCAC+CGG + chr1_1:69001750-69001769 Msa0039420:intron 30.0%
AAAATTAGACTTGACAATGC+CGG - chr1_1:69001772-69001791 None:intergenic 30.0%
TAATTGATGCATCTAGTAGA+TGG - chr1_1:69001894-69001913 None:intergenic 30.0%
! AATACCATAAAGTACCTGAA+TGG + chr1_1:69001913-69001932 Msa0039420:intron 30.0%
!! GTAAGCTTTAAACCTTTCAA+TGG + chr1_1:69002078-69002097 Msa0039420:intron 30.0%
! ATGCCATAAAGTCATAGTTT+TGG + chr1_1:69002164-69002183 Msa0039420:intron 30.0%
! TGCCATAAAGTCATAGTTTT+GGG + chr1_1:69002165-69002184 Msa0039420:intron 30.0%
ATCCCAAAACTATGACTTTA+TGG - chr1_1:69002170-69002189 None:intergenic 30.0%
AAATTACCAAAATTGCCTTC+TGG - chr1_1:69002246-69002265 None:intergenic 30.0%
CTATGTTCATGTTACCAAAT+GGG - chr1_1:69002437-69002456 None:intergenic 30.0%
GGTGTAATAAACACAATTTC+AGG - chr1_1:69002492-69002511 None:intergenic 30.0%
GTGTTTATTACACCTTTAGT+AGG + chr1_1:69002498-69002517 Msa0039420:intron 30.0%
! ACCTTTAGTAGGGAATATTT+TGG + chr1_1:69002509-69002528 Msa0039420:intron 30.0%
ACCAAAATATTCCCTACTAA+AGG - chr1_1:69002513-69002532 None:intergenic 30.0%
TGTTATAGATGTGGAAAGAA+AGG - chr1_1:69002954-69002973 None:intergenic 30.0%
GATGATAGTTGTTATAGATG+TGG - chr1_1:69002963-69002982 None:intergenic 30.0%
! ACTATCATCATGATTTCTAG+AGG + chr1_1:69002974-69002993 Msa0039420:intron 30.0%
! CTATCATCATGATTTCTAGA+GGG + chr1_1:69002975-69002994 Msa0039420:intron 30.0%
CAATCAAACAAGAATCATCA+GGG - chr1_1:69003026-69003045 None:intergenic 30.0%
! TTTGATTGGTCATATTTGAG+AGG + chr1_1:69003038-69003057 Msa0039420:intron 30.0%
GCAACAACAATATAGAATGA+GGG - chr1_1:69003333-69003352 None:intergenic 30.0%
TGCAACAACAATATAGAATG+AGG - chr1_1:69003334-69003353 None:intergenic 30.0%
TATAACTGAAGTGGAAAAGT+TGG - chr1_1:69003396-69003415 None:intergenic 30.0%
TGGATCAATGGAACAAATTA+AGG - chr1_1:69003499-69003518 None:intergenic 30.0%
TTCCATTGATCCATTAATGA+GGG + chr1_1:69003506-69003525 Msa0039420:intron 30.0%
AGTATTATTGCCCTCATTAA+TGG - chr1_1:69003519-69003538 None:intergenic 30.0%
! AATTTTGTCCCATAAGATCT+TGG + chr1_1:69003565-69003584 Msa0039420:intron 30.0%
! ATTTTGTCCCATAAGATCTT+GGG + chr1_1:69003566-69003585 Msa0039420:intron 30.0%
AAAAGATCCCAAGATCTTAT+GGG - chr1_1:69003576-69003595 None:intergenic 30.0%
TTTGTAATCCATCATCAATG+TGG + chr1_1:69003612-69003631 Msa0039420:intron 30.0%
! TTTTTCTTTGCTAATTCCTC+TGG + chr1_1:69003662-69003681 Msa0039420:intron 30.0%
! TTTTCTTTGCTAATTCCTCT+GGG + chr1_1:69003663-69003682 Msa0039420:intron 30.0%
! CTTCTCCTATTTCTTCAATA+AGG + chr1_1:69004034-69004053 Msa0039420:intron 30.0%
ATAGAGAGATGCATATGAAA+AGG + chr1_1:69004088-69004107 Msa0039420:intron 30.0%
!! GCTATGAACAGTGTTTTTAA+CGG - chr1_1:69004224-69004243 None:intergenic 30.0%
TTCATGAACAGTGATTTCAA+CGG - chr1_1:69004268-69004287 None:intergenic 30.0%
AAAACACTGTTCATTAACGT+TGG + chr1_1:69004339-69004358 Msa0039420:intron 30.0%
!! TTTATTTTCATGTCTGTTGG+AGG - chr1_1:69004947-69004966 None:intergenic 30.0%
! ATTGTCAGTTTTCTATAACC+GGG + chr1_1:69005048-69005067 Msa0039420:intron 30.0%
AAGAAGTTTACACTACTACT+AGG - chr1_1:69005165-69005184 None:intergenic 30.0%
TGTAATGCAAAGAAAGGATA+CGG - chr1_1:68998850-68998869 None:intergenic 30.0%
AGAACATGTAATGCAAAGAA+AGG - chr1_1:68998856-68998875 None:intergenic 30.0%
GATGTGTAAATGACCAAAAT+GGG + chr1_1:69005465-69005484 Msa0039420:intron 30.0%
GAGCAAGAAACAAAAATTCA+AGG + chr1_1:69005744-69005763 Msa0039420:intron 30.0%
GGGATCTGTCAAATATTAAA+AGG + chr1_1:69005927-69005946 Msa0039420:intron 30.0%
! TTAAAAGGTATGTGAAAGGA+AGG + chr1_1:69005942-69005961 Msa0039420:intron 30.0%
! TAAAAGGTATGTGAAAGGAA+GGG + chr1_1:69005943-69005962 Msa0039420:intron 30.0%
!! ATTTTGAAGGTGAAAAAGTG+CGG + chr1_1:69006066-69006085 Msa0039420:intron 30.0%
! AATTGATTCTACCTAGCTTT+AGG - chr1_1:69006313-69006332 None:intergenic 30.0%
! CTTCACCTTCAAATCAATTT+TGG + chr1_1:69006555-69006574 Msa0039420:intron 30.0%
CTACTAACATAAATTGAGAC+TGG + chr1_1:69006736-69006755 Msa0039420:intron 30.0%
! ATATTCTAGCTGATCTAAAG+TGG - chr1_1:69007091-69007110 None:intergenic 30.0%
TTTGATGAGAAAGATTTGAC+CGG + chr1_1:69007598-69007617 Msa0039420:CDS 30.0%
! GTTTATGGAGAAGTATGTTA+AGG + chr1_1:69007678-69007697 Msa0039420:CDS 30.0%
AAAAACTGAGCAAAAATGTC+AGG + chr1_1:69007905-69007924 Msa0039420:three_prime_UTR 30.0%
!! CAAGTTTTCATAGTTAGTCT+AGG + chr1_1:69007928-69007947 Msa0039420:three_prime_UTR 30.0%
AAAGCAATGCACAATTCATT+AGG - chr1_1:69008212-69008231 None:intergenic 30.0%
AATGAATTGTGCATTGCTTT+AGG + chr1_1:69008212-69008231 Msa0039420:three_prime_UTR 30.0%
! ATTGCTTTAGGCTTTGTATA+AGG + chr1_1:69008224-69008243 Msa0039420:three_prime_UTR 30.0%
! TTGCTTTAGGCTTTGTATAA+GGG + chr1_1:69008225-69008244 Msa0039420:three_prime_UTR 30.0%
GTGGTGAATTGAAAATTTAG+TGG + chr1_1:69008271-69008290 Msa0039420:three_prime_UTR 30.0%
TCATGATAAACCCTTGCTTA+TGG + chr1_1:68998437-68998456 Msa0039420:CDS 35.0%
ACAGGAACGAAACATAATTG+AGG + chr1_1:68998929-68998948 Msa0039420:intron 35.0%
GAACGAAACATAATTGAGGT+GGG + chr1_1:68998933-68998952 Msa0039420:intron 35.0%
!! GGGGAGTGTTATAATAATGA+TGG - chr1_1:68998966-68998985 None:intergenic 35.0%
ATTATTATAACACTCCCCCT+TGG + chr1_1:68998968-68998987 Msa0039420:intron 35.0%
TTAACGAGGCAACATATCTT+CGG - chr1_1:68999001-68999020 None:intergenic 35.0%
GCCTCGTTAAAAACCTTATT+AGG + chr1_1:68999011-68999030 Msa0039420:intron 35.0%
!! CCAATGGGTTTTTCCTAATA+AGG - chr1_1:68999027-68999046 None:intergenic 35.0%
CCTTATTAGGAAAAACCCAT+TGG + chr1_1:68999024-68999043 Msa0039420:intron 35.0%
! GCACTCTTTTTCCCTTATTA+AGG - chr1_1:68999058-68999077 None:intergenic 35.0%
TGCTTCTTGAAAACTGATGT+AGG + chr1_1:68999156-68999175 Msa0039420:intron 35.0%
GCTTCTTGAAAACTGATGTA+GGG + chr1_1:68999157-68999176 Msa0039420:intron 35.0%
! TATCCGTTCAAGTGATAATG+TGG - chr1_1:68999205-68999224 None:intergenic 35.0%
TGTGTGAATGAGAAGAACTT+AGG + chr1_1:68999261-68999280 Msa0039420:intron 35.0%
TGAATGAGAAGAACTTAGGA+GGG + chr1_1:68999265-68999284 Msa0039420:intron 35.0%
TCCTTTGATATGTTGCGAAA+CGG + chr1_1:68999398-68999417 Msa0039420:intron 35.0%
GGATATGTATTCACATATGG+TGG - chr1_1:68999534-68999553 None:intergenic 35.0%
ATACGAGGTACATCTAATCT+TGG - chr1_1:68999648-68999667 None:intergenic 35.0%
CCTACAAATAGACATTGGAA+AGG - chr1_1:68999693-68999712 None:intergenic 35.0%
CCTTTCCAATGTCTATTTGT+AGG + chr1_1:68999690-68999709 Msa0039420:intron 35.0%
CATGTCCTACAAATAGACAT+TGG - chr1_1:68999698-68999717 None:intergenic 35.0%
! AGCTTTTGCAGTGAATTTAC+TGG - chr1_1:68999733-68999752 None:intergenic 35.0%
TTCACTGCAAAAGCTATATC+AGG + chr1_1:68999738-68999757 Msa0039420:intron 35.0%
! AAAGGATCCTTTTAGACCTA+AGG - chr1_1:68999847-68999866 None:intergenic 35.0%
TTAAGTGTTCTTCCCATCAT+TGG + chr1_1:68999873-68999892 Msa0039420:intron 35.0%
AAAGTAATGGCATCCATAAC+AGG + chr1_1:69000434-69000453 Msa0039420:intron 35.0%
GGTAACATATTCTCCTGTTA+TGG - chr1_1:69000450-69000469 None:intergenic 35.0%
GTTACCTCATAATCAATACC+TGG + chr1_1:69000464-69000483 Msa0039420:intron 35.0%
AAAAACCTTGTGCAACAAGA+CGG + chr1_1:69000495-69000514 Msa0039420:intron 35.0%
! CTAAAGGTATGAAACCTGTT+GGG - chr1_1:69000580-69000599 None:intergenic 35.0%
CCTATTATGGCTATACCTAA+AGG - chr1_1:69000596-69000615 None:intergenic 35.0%
CCTTTAGGTATAGCCATAAT+AGG + chr1_1:69000593-69000612 Msa0039420:intron 35.0%
GAAAAACTGGAAAGATGCAA+TGG - chr1_1:69000660-69000679 None:intergenic 35.0%
!! TCTGTTCCTTTTCTTTTTCG+GGG + chr1_1:69000977-69000996 Msa0039420:intron 35.0%
!! TTTTCGGGGATTTTTGTCTT+TGG + chr1_1:69000991-69001010 Msa0039420:intron 35.0%
TGATGTAGCAAGTACATCTA+AGG - chr1_1:69001047-69001066 None:intergenic 35.0%
TGGTGGAGAAAATAAACCAT+TGG - chr1_1:69001272-69001291 None:intergenic 35.0%
! TTATTTTCTCCACCAAGTGT+TGG + chr1_1:69001277-69001296 Msa0039420:intron 35.0%
! ACAAATTTTCCAACACTTGG+TGG - chr1_1:69001289-69001308 None:intergenic 35.0%
GAAGGTTAGGAATATATGTG+GGG - chr1_1:69001399-69001418 None:intergenic 35.0%
!! ACCAATAGCAAGTTGATAAG+GGG + chr1_1:69001510-69001529 Msa0039420:intron 35.0%
GTATGTTTATGATCAGCACT+TGG + chr1_1:69001532-69001551 Msa0039420:intron 35.0%
TAAGCTTCCAGTTACAGTTT+GGG - chr1_1:69001599-69001618 None:intergenic 35.0%
TTTACTGTCAAGTCGTGATA+TGG - chr1_1:69001860-69001879 None:intergenic 35.0%
AGAATCCAAGGAGATATATG+TGG - chr1_1:69001961-69001980 None:intergenic 35.0%
GCATTTCTTGAAAGAATCCA+AGG - chr1_1:69001973-69001992 None:intergenic 35.0%
TGGATTCTTTCAAGAAATGC+AGG + chr1_1:69001973-69001992 Msa0039420:intron 35.0%
! TGTAATCCAGAAGGCAATTT+TGG + chr1_1:69002237-69002256 Msa0039420:intron 35.0%
GATACTGAAACTACAACTGA+AGG - chr1_1:69002327-69002346 None:intergenic 35.0%
ATGACAAACTTTGTCCCATT+TGG + chr1_1:69002420-69002439 Msa0039420:intron 35.0%
GCTATGTTCATGTTACCAAA+TGG - chr1_1:69002438-69002457 None:intergenic 35.0%
GCAGATTTAATTGAAGGAAC+AGG - chr1_1:69002465-69002484 None:intergenic 35.0%
GTTCCTTCAATTAAATCTGC+AGG + chr1_1:69002465-69002484 Msa0039420:intron 35.0%
! AGACATGTAGTGTCATTCTT+TGG + chr1_1:69002828-69002847 Msa0039420:intron 35.0%
AGATACAAAGAATCTGTGGA+TGG - chr1_1:69002888-69002907 None:intergenic 35.0%
ATGTGGAAAGAAAGGTCATT+GGG - chr1_1:69002946-69002965 None:intergenic 35.0%
AAAGGTAAAAACATCCAGGA+AGG - chr1_1:69003002-69003021 None:intergenic 35.0%
AACAAGAATCATCAGGGAAA+AGG - chr1_1:69003020-69003039 None:intergenic 35.0%
CCAATCAAACAAGAATCATC+AGG - chr1_1:69003027-69003046 None:intergenic 35.0%
! CCTGATGATTCTTGTTTGAT+TGG + chr1_1:69003024-69003043 Msa0039420:intron 35.0%
! ACGCCACAACTTTTAATCAA+GGG - chr1_1:69003193-69003212 None:intergenic 35.0%
! AACGCCACAACTTTTAATCA+AGG - chr1_1:69003194-69003213 None:intergenic 35.0%
AAAGTTGTGGCGTTTATTTC+AGG + chr1_1:69003200-69003219 Msa0039420:intron 35.0%
TGGCAAAACTATAACTGAAG+TGG - chr1_1:69003405-69003424 None:intergenic 35.0%
GTTCCATTGATCCATTAATG+AGG + chr1_1:69003505-69003524 Msa0039420:intron 35.0%
CAAAAGATCCCAAGATCTTA+TGG - chr1_1:69003577-69003596 None:intergenic 35.0%
ATTGAGTATCTTGCATGTGA+GGG - chr1_1:69003728-69003747 None:intergenic 35.0%
AATTGAGTATCTTGCATGTG+AGG - chr1_1:69003729-69003748 None:intergenic 35.0%
! CTCAATTAAGTTGTTGTTCC+AGG + chr1_1:69003742-69003761 Msa0039420:intron 35.0%
!!! ATTACCTTTTGTTTTGGTGG+AGG - chr1_1:69003958-69003977 None:intergenic 35.0%
TTCGCCCTTATTGAAGAAAT+AGG - chr1_1:69004042-69004061 None:intergenic 35.0%
CATATGCATCTCTCTATTTG+TGG - chr1_1:69004085-69004104 None:intergenic 35.0%
GAACGTTAAAATCACTGTTC+AGG + chr1_1:69004285-69004304 Msa0039420:intron 35.0%
! TTGTCAGTTTTCTATAACCG+GGG + chr1_1:69005049-69005068 Msa0039420:intron 35.0%
AGTTTACACTACTACTAGGT+AGG - chr1_1:69005161-69005180 None:intergenic 35.0%
ACAGGAACGAAACATAATTG+AGG + chr1_1:68998929-68998948 Msa0039420:intron 35.0%
GAACGAAACATAATTGAGGT+GGG + chr1_1:68998933-68998952 Msa0039420:intron 35.0%
GGATGTGTAAATGACCAAAA+TGG + chr1_1:69005464-69005483 Msa0039420:intron 35.0%
! AAGGAAGAAGACACTGTTTT+TGG - chr1_1:69005811-69005830 None:intergenic 35.0%
TGTGTGTTGCAGAAAATTCA+AGG - chr1_1:69005830-69005849 None:intergenic 35.0%
AAAGGAAGGGATAAGATTCA+AGG + chr1_1:69005956-69005975 Msa0039420:intron 35.0%
! AGAATCGATTTCAAGAAGCT+AGG + chr1_1:69006020-69006039 Msa0039420:intron 35.0%
! GAATCGATTTCAAGAAGCTA+GGG + chr1_1:69006021-69006040 Msa0039420:intron 35.0%
!! TCTCCAAGAATCGATTTTGA+AGG + chr1_1:69006053-69006072 Msa0039420:intron 35.0%
! TCACCTTCAAAATCGATTCT+TGG - chr1_1:69006059-69006078 None:intergenic 35.0%
!!! TGAAAGCACTTTTCATGGAT+AGG + chr1_1:69006123-69006142 Msa0039420:intron 35.0%
GAATCAATTCAGTCTGTGTT+TGG - chr1_1:69006178-69006197 None:intergenic 35.0%
!! CAATTCTAGAACCTAAAGCT+AGG + chr1_1:69006299-69006318 Msa0039420:intron 35.0%
CTAGGTAGAATCAATTCTTG+AGG + chr1_1:69006317-69006336 Msa0039420:intron 35.0%
ATGAAACACGAACACATACA+CGG - chr1_1:69006501-69006520 None:intergenic 35.0%
CACATAATAGTTAATGGCCA+TGG - chr1_1:69006679-69006698 None:intergenic 35.0%
CTTATTATGAGAAGAGCTTG+TGG + chr1_1:69006917-69006936 Msa0039420:intron 35.0%
AAGATGCGCTTATGCTTAAT+GGG - chr1_1:69007009-69007028 None:intergenic 35.0%
AAAGATGCGCTTATGCTTAA+TGG - chr1_1:69007010-69007029 None:intergenic 35.0%
TTGTTGTAATGTTGTCTGCT+TGG + chr1_1:69007055-69007074 Msa0039420:intron 35.0%
! TGGGTTGAACAACAAATTCA+AGG - chr1_1:69007281-69007300 None:intergenic 35.0%
CACTTCAGTTTCTTGGAAAT+TGG - chr1_1:69007424-69007443 None:intergenic 35.0%
CAATTTCCAAGAAACTGAAG+TGG + chr1_1:69007422-69007441 Msa0039420:intron 35.0%
TTGCCAGCAAATAAAGCATA+CGG - chr1_1:69007547-69007566 None:intergenic 35.0%
! ATGGAGAAGTATGTTAAGGT+CGG + chr1_1:69007682-69007701 Msa0039420:CDS 35.0%
TATCTGCCTCAACATTTGAA+GGG - chr1_1:69007837-69007856 None:intergenic 35.0%
TTATCTGCCTCAACATTTGA+AGG - chr1_1:69007838-69007857 None:intergenic 35.0%
!!! AGTTTTTTCAGCAACTACTG+TGG - chr1_1:69007892-69007911 None:intergenic 35.0%
ATGACATTCGAGTCATATCT+TGG + chr1_1:69008093-69008112 Msa0039420:three_prime_UTR 35.0%
TGACATTCGAGTCATATCTT+GGG + chr1_1:69008094-69008113 Msa0039420:three_prime_UTR 35.0%
AGCATTGCGTTATTCAATCA+AGG - chr1_1:69008144-69008163 None:intergenic 35.0%
! TTAGGCTTTGTATAAGGGTT+AGG + chr1_1:69008230-69008249 Msa0039420:three_prime_UTR 35.0%
AGGAGGAATTTGTAGACTTG+TGG - chr1_1:68998098-68998117 None:intergenic 40.0%
AAGATGGTGAAGAAAGTGGT+CGG - chr1_1:68998240-68998259 None:intergenic 40.0%
ACCAGAAAGGACGTAGTAAA+CGG - chr1_1:68998277-68998296 None:intergenic 40.0%
ATAAGCCTTGAGCTCTTCTT+CGG - chr1_1:68998406-68998425 None:intergenic 40.0%
ACCCTTGCTTATGGCTATTA+AGG + chr1_1:68998446-68998465 Msa0039420:CDS 40.0%
CCCTTAATAGCCATAAGCAA+GGG - chr1_1:68998450-68998469 None:intergenic 40.0%
CCCTTGCTTATGGCTATTAA+GGG + chr1_1:68998447-68998466 Msa0039420:CDS 40.0%
ACCCTTAATAGCCATAAGCA+AGG - chr1_1:68998451-68998470 None:intergenic 40.0%
GGAAGAAAAGGAAAAGCTAC+AGG + chr1_1:68998885-68998904 Msa0039420:intron 40.0%
GGAACGAAACATAATTGAGG+TGG + chr1_1:68998932-68998951 Msa0039420:intron 40.0%
AAGAACGTGTGTTTGGTTGA+GGG - chr1_1:68999094-68999113 None:intergenic 40.0%
CTGCCACATTATCACTTGAA+CGG + chr1_1:68999199-68999218 Msa0039420:intron 40.0%
GTGAATGAGAAGAACTTAGG+AGG + chr1_1:68999264-68999283 Msa0039420:intron 40.0%
GAACTTAGGAGGGATATGTT+TGG + chr1_1:68999275-68999294 Msa0039420:intron 40.0%
TCCGTTTCGCAACATATCAA+AGG - chr1_1:68999402-68999421 None:intergenic 40.0%
! AAGCAAGCAAAGAGTGTAGA+TGG - chr1_1:68999431-68999450 None:intergenic 40.0%
GTACCATATCTAAGTGCCAT+AGG - chr1_1:68999795-68999814 None:intergenic 40.0%
CCTTTGAGTACTCCAATGAT+GGG - chr1_1:68999888-68999907 None:intergenic 40.0%
TCCTTTGAGTACTCCAATGA+TGG - chr1_1:68999889-68999908 None:intergenic 40.0%
! GGGAAAACTAGATTTTGCCT+TGG - chr1_1:69000005-69000024 None:intergenic 40.0%
TCATGCATCTTAAGTCCTTC+TGG + chr1_1:69000302-69000321 Msa0039420:intron 40.0%
!! ACGACCAGGTATTGATTATG+AGG - chr1_1:69000471-69000490 None:intergenic 40.0%
AAAACCTTGTGCAACAAGAC+GGG + chr1_1:69000496-69000515 Msa0039420:intron 40.0%
AAAACCCACTTATACCCAAC+AGG + chr1_1:69000563-69000582 Msa0039420:intron 40.0%
GAAACCTGTTGGGTATAAGT+GGG - chr1_1:69000570-69000589 None:intergenic 40.0%
TGAAACCTGTTGGGTATAAG+TGG - chr1_1:69000571-69000590 None:intergenic 40.0%
! CCTAAAGGTATGAAACCTGT+TGG - chr1_1:69000581-69000600 None:intergenic 40.0%
CCAACAGGTTTCATACCTTT+AGG + chr1_1:69000578-69000597 Msa0039420:intron 40.0%
TCATTAACAGATCTGGGTTC+AGG + chr1_1:69000701-69000720 Msa0039420:intron 40.0%
!! TGTCTTTGGAACCTATAGGT+CGG + chr1_1:69001005-69001024 Msa0039420:intron 40.0%
TTCGAAATTTCAATCCGAGC+TGG + chr1_1:69001073-69001092 Msa0039420:intron 40.0%
TCGAAATTTCAATCCGAGCT+GGG + chr1_1:69001074-69001093 Msa0039420:intron 40.0%
CAAAAATGGGTCCTCAAAGA+AGG - chr1_1:69001417-69001436 None:intergenic 40.0%
CCACCACAAAGGACAAAAAT+GGG - chr1_1:69001430-69001449 None:intergenic 40.0%
TCCACCACAAAGGACAAAAA+TGG - chr1_1:69001431-69001450 None:intergenic 40.0%
!! ACCCCTTATCAACTTGCTAT+TGG - chr1_1:69001514-69001533 None:intergenic 40.0%
AAGCTTCCAGTTACAGTTTG+GGG - chr1_1:69001598-69001617 None:intergenic 40.0%
CTAAGCTTCCAGTTACAGTT+TGG - chr1_1:69001600-69001619 None:intergenic 40.0%
CCTCATGTGCATACACAAAA+TGG - chr1_1:69001682-69001701 None:intergenic 40.0%
! CCATTTTGTGTATGCACATG+AGG + chr1_1:69001679-69001698 Msa0039420:intron 40.0%
AGGACCATTCAGGTACTTTA+TGG - chr1_1:69001920-69001939 None:intergenic 40.0%
AATTCTGTCTGAATCTTGCC+TGG + chr1_1:69001997-69002016 Msa0039420:intron 40.0%
ACTCATGGTCATCCATTGAA+AGG - chr1_1:69002093-69002112 None:intergenic 40.0%
ACTTTATGGCATGACCGTTT+AGG - chr1_1:69002156-69002175 None:intergenic 40.0%
GGTCCTGCAGATTTAATTGA+AGG - chr1_1:69002471-69002490 None:intergenic 40.0%
AGAAGGTTAGAAATGGATCC+TGG - chr1_1:69002600-69002619 None:intergenic 40.0%
!!! GAGGCTGCTGATTTTATTGA+AGG - chr1_1:69002807-69002826 None:intergenic 40.0%
GAATGACACTACATGTCTTG+AGG - chr1_1:69002826-69002845 None:intergenic 40.0%
ATCTGTGGATGGAAAGGAAA+AGG - chr1_1:69002877-69002896 None:intergenic 40.0%
CAAAGAATCTGTGGATGGAA+AGG - chr1_1:69002883-69002902 None:intergenic 40.0%
GATGTGGAAAGAAAGGTCAT+TGG - chr1_1:69002947-69002966 None:intergenic 40.0%
GGGAAAAGGTAAAAACATCC+AGG - chr1_1:69003006-69003025 None:intergenic 40.0%
! AGAAACCATTTTCGTGGTAG+AGG - chr1_1:69003092-69003111 None:intergenic 40.0%
! CATGGTAGAAACCATTTTCG+TGG - chr1_1:69003098-69003117 None:intergenic 40.0%
! ACAACTTTTAATCAAGGGCG+TGG - chr1_1:69003188-69003207 None:intergenic 40.0%
ACGCCCTTGATTAAAAGTTG+TGG + chr1_1:69003187-69003206 Msa0039420:intron 40.0%
! TGCCCTCATTAATGGATCAA+TGG - chr1_1:69003511-69003530 None:intergenic 40.0%
ATCAAGCACCACATTGATGA+TGG - chr1_1:69003623-69003642 None:intergenic 40.0%
ATTCTTGAGGGAGACGATTT+GGG - chr1_1:69003695-69003714 None:intergenic 40.0%
GGACTAGACAAGATTCTTGA+GGG - chr1_1:69003707-69003726 None:intergenic 40.0%
TAAGCCTCCACCAAAACAAA+AGG + chr1_1:69003951-69003970 Msa0039420:intron 40.0%
!! GTCCTGAACAGTGTTTTGAA+CGG - chr1_1:69004246-69004265 None:intergenic 40.0%
GGAAGAAAAGGAAAAGCTAC+AGG + chr1_1:68998885-68998904 Msa0039420:intron 40.0%
GGAACGAAACATAATTGAGG+TGG + chr1_1:68998932-68998951 Msa0039420:intron 40.0%
AGAGAAGACACTGGTGTAAA+CGG - chr1_1:69005785-69005804 None:intergenic 40.0%
!!! GAAGAAGACACTGTTTTTGG+AGG - chr1_1:69005808-69005827 None:intergenic 40.0%
CAGACAACAATCAAACAGTG+AGG + chr1_1:69005886-69005905 Msa0039420:intron 40.0%
ACAACAATCAAACAGTGAGG+TGG + chr1_1:69005889-69005908 Msa0039420:intron 40.0%
!! AAAAGTGCTTTCAGCGTGTT+TGG - chr1_1:69006116-69006135 None:intergenic 40.0%
!! AGGGGCCAAAATTGATTTGA+AGG - chr1_1:69006563-69006582 None:intergenic 40.0%
! TGTATGTTTGGTTCCACTTC+TGG - chr1_1:69006586-69006605 None:intergenic 40.0%
AGATGCGCTTATGCTTAATG+GGG - chr1_1:69007008-69007027 None:intergenic 40.0%
GATGTACCACTTCAGTTTCT+TGG - chr1_1:69007431-69007450 None:intergenic 40.0%
! ATCTGTAATTGTGTCGTTCC+AGG + chr1_1:69007500-69007519 Msa0039420:intron 40.0%
! TGTCGTTCCAGGATGTTTTA+TGG + chr1_1:69007511-69007530 Msa0039420:intron 40.0%
! TTCCAGGATGTTTTATGGAC+CGG + chr1_1:69007516-69007535 Msa0039420:intron 40.0%
!! GTATGCTTTATTTGCTGGCA+AGG + chr1_1:69007546-69007565 Msa0039420:CDS 40.0%
GATTTGACCGGTGATATTTC+TGG + chr1_1:69007610-69007629 Msa0039420:CDS 40.0%
GGACTGGGAATACAAGTTTA+TGG + chr1_1:69007663-69007682 Msa0039420:CDS 40.0%
AGTTACTGAAGCTGAATCCA+CGG + chr1_1:69007720-69007739 Msa0039420:CDS 40.0%
GCTGTTAATCCAACTGAAGA+TGG + chr1_1:69007775-69007794 Msa0039420:CDS 40.0%
GTTAATCCAACTGAAGATGG+CGG + chr1_1:69007778-69007797 Msa0039420:CDS 40.0%
ATCTGCCTCAACATTTGAAG+GGG - chr1_1:69007836-69007855 None:intergenic 40.0%
GCAAATCAACAGTGCATAAG+TGG - chr1_1:69007958-69007977 None:intergenic 40.0%
GCTTTGTATAAGGGTTAGGA+GGG + chr1_1:69008234-69008253 Msa0039420:three_prime_UTR 40.0%
AGAGAGAGAGAGACTGAAGT+AGG - chr1_1:68998118-68998137 None:intergenic 45.0%
GACCACTTTCTTCACCATCT+TGG + chr1_1:68998239-68998258 Msa0039420:CDS 45.0%
AGCCAAGATGGTGAAGAAAG+TGG - chr1_1:68998244-68998263 None:intergenic 45.0%
GGCAAATAGAAGAGCCAAGA+TGG - chr1_1:68998256-68998275 None:intergenic 45.0%
! TACGTCCTTTCTGGTCTCTT+TGG + chr1_1:68998282-68998301 Msa0039420:CDS 45.0%
AGTAGCCAAAGAGACCAGAA+AGG - chr1_1:68998290-68998309 None:intergenic 45.0%
ATTTCACCTAGCTGAACAGG+TGG - chr1_1:68998381-68998400 None:intergenic 45.0%
GTGATTTCACCTAGCTGAAC+AGG - chr1_1:68998384-68998403 None:intergenic 45.0%
AATCACCGAAGAAGAGCTCA+AGG + chr1_1:68998398-68998417 Msa0039420:CDS 45.0%
GAAGAGCTCAAGGCTTATGA+TGG + chr1_1:68998408-68998427 Msa0039420:CDS 45.0%
TCTATGATGTCTCTCAGAGC+AGG + chr1_1:68998475-68998494 Msa0039420:CDS 45.0%
TATCTTCGGTGGACATCCAA+GGG - chr1_1:68998987-68999006 None:intergenic 45.0%
ATATCTTCGGTGGACATCCA+AGG - chr1_1:68998988-68999007 None:intergenic 45.0%
AGAACGTGTGTTTGGTTGAG+GGG - chr1_1:68999093-68999112 None:intergenic 45.0%
GAAGAACGTGTGTTTGGTTG+AGG - chr1_1:68999095-68999114 None:intergenic 45.0%
!! CAACATATCAAAGGAGCGTC+TGG - chr1_1:68999393-68999412 None:intergenic 45.0%
ATGGTGGCACTGCAATATCA+TGG - chr1_1:68999518-68999537 None:intergenic 45.0%
TCTGCATAGCCAAGCAAAAC+TGG + chr1_1:68999597-68999616 Msa0039420:intron 45.0%
! CAGGTCTTGTACAGTTAGCA+AGG + chr1_1:68999757-68999776 Msa0039420:intron 45.0%
AAGGTACATGAGTGCTCCTA+TGG + chr1_1:68999776-68999795 Msa0039420:intron 45.0%
GCTCCTATGGCACTTAGATA+TGG + chr1_1:68999789-68999808 Msa0039420:intron 45.0%
! CCCATCATTGGAGTACTCAA+AGG + chr1_1:68999885-68999904 Msa0039420:intron 45.0%
! CAAGGTTTTTCTCAACGACC+AGG - chr1_1:69000485-69000504 None:intergenic 45.0%
AGGAAATTTGTGGAGCCGAA+AGG - chr1_1:69000792-69000811 None:intergenic 45.0%
ATGGGTCCTCAAAGAAGGTT+AGG - chr1_1:69001412-69001431 None:intergenic 45.0%
!! GGACCCATTTTTGTCCTTTG+TGG + chr1_1:69001424-69001443 Msa0039420:intron 45.0%
!! CCCATTTTTGTCCTTTGTGG+TGG + chr1_1:69001427-69001446 Msa0039420:intron 45.0%
TACCAATAGCTCCACCACAA+AGG - chr1_1:69001441-69001460 None:intergenic 45.0%
TGTGTATGCACATGAGGAAC+AGG + chr1_1:69001685-69001704 Msa0039420:intron 45.0%
AAGTACCTGAATGGTCCTGA+CGG + chr1_1:69001922-69001941 Msa0039420:intron 45.0%
TGGGTCCACATATATCTCCT+TGG + chr1_1:69001953-69001972 Msa0039420:intron 45.0%
! CCATGTGAAGCTTGTTCTCT+TGG - chr1_1:69002045-69002064 None:intergenic 45.0%
CCAAGAGAACAAGCTTCACA+TGG + chr1_1:69002042-69002061 Msa0039420:intron 45.0%
TTACGCATCATTGTTGAGCC+AGG + chr1_1:69002126-69002145 Msa0039420:intron 45.0%
TACGCATCATTGTTGAGCCA+GGG + chr1_1:69002127-69002146 Msa0039420:intron 45.0%
GTATGAGTAGTTCCACTGTC+TGG + chr1_1:69002558-69002577 Msa0039420:intron 45.0%
GACATTTGCATTCCAGACAG+TGG - chr1_1:69002573-69002592 None:intergenic 45.0%
GGAATGCAAATGTCTTTGCC+AGG + chr1_1:69002579-69002598 Msa0039420:intron 45.0%
GTCATTGGGCTAAAACATGC+AGG - chr1_1:69002932-69002951 None:intergenic 45.0%
TATAATCGCCAAAGAGGACG+TGG - chr1_1:69003161-69003180 None:intergenic 45.0%
GGTGGTTATAATCGCCAAAG+AGG - chr1_1:69003167-69003186 None:intergenic 45.0%
!! ACTTTTAATCAAGGGCGTGG+TGG - chr1_1:69003185-69003204 None:intergenic 45.0%
GGATATGCCATTGTTCCTGT+AGG + chr1_1:69003221-69003240 Msa0039420:intron 45.0%
TTTGGTTGCAGCTCTTCTAG+TGG - chr1_1:69003291-69003310 None:intergenic 45.0%
GATTCTTGAGGGAGACGATT+TGG - chr1_1:69003696-69003715 None:intergenic 45.0%
GGGACTAGACAAGATTCTTG+AGG - chr1_1:69003708-69003727 None:intergenic 45.0%
AGCCGTTCAAAACACTGTTC+AGG + chr1_1:69004241-69004260 Msa0039420:intron 45.0%
!! TTTTGGAGGAGAGAAGACAC+TGG - chr1_1:69005794-69005813 None:intergenic 45.0%
AGGTGGAGTAAGTGAAGTGA+AGG + chr1_1:69005906-69005925 Msa0039420:intron 45.0%
GGTGGAGTAAGTGAAGTGAA+GGG + chr1_1:69005907-69005926 Msa0039420:intron 45.0%
! TTGAAGGTGAAAAAGTGCGG+CGG + chr1_1:69006069-69006088 Msa0039420:intron 45.0%
!!! CACGCTGAAAGCACTTTTCA+TGG + chr1_1:69006118-69006137 Msa0039420:intron 45.0%
!! GCACTTTTGAGTGTTCTAGC+CGG + chr1_1:69006148-69006167 Msa0039420:intron 45.0%
!! CACTTTTGAGTGTTCTAGCC+GGG + chr1_1:69006149-69006168 Msa0039420:intron 45.0%
TCAGTCTGTGTTTGGTTACC+CGG - chr1_1:69006170-69006189 None:intergenic 45.0%
! ACGAAAGCATAGACACTCCT+CGG + chr1_1:69006364-69006383 Msa0039420:intron 45.0%
! TGTTTGGTTCCACTTCTGGA+GGG - chr1_1:69006582-69006601 None:intergenic 45.0%
! ATGTTTGGTTCCACTTCTGG+AGG - chr1_1:69006583-69006602 None:intergenic 45.0%
GTATCTACTTAGGGCCTGTT+TGG - chr1_1:69006968-69006987 None:intergenic 45.0%
GATGCGCTTATGCTTAATGG+GGG - chr1_1:69007007-69007026 None:intergenic 45.0%
! AAGCGCATCTTTTGTCCCTT+TGG + chr1_1:69007018-69007037 Msa0039420:intron 45.0%
! TCCAGGATGTTTTATGGACC+GGG + chr1_1:69007517-69007536 Msa0039420:intron 45.0%
AATAAAGCATACGGTCCACC+CGG - chr1_1:69007538-69007557 None:intergenic 45.0%
!! GGACCGTATGCTTTATTTGC+TGG + chr1_1:69007541-69007560 Msa0039420:CDS 45.0%
!! ACCGGTGATATTTCTGGTCT+TGG + chr1_1:69007616-69007635 Msa0039420:CDS 45.0%
GCCAAGACCAGAAATATCAC+CGG - chr1_1:69007620-69007639 None:intergenic 45.0%
GTAACGCGTCAAGCTCAAAT+GGG - chr1_1:69007642-69007661 None:intergenic 45.0%
TGTAACGCGTCAAGCTCAAA+TGG - chr1_1:69007643-69007662 None:intergenic 45.0%
ATTTGAGCTTGACGCGTTAC+AGG + chr1_1:69007642-69007661 Msa0039420:CDS 45.0%
GTGGATTCAGCTTCAGTAAC+TGG - chr1_1:69007721-69007740 None:intergenic 45.0%
GTTACTGAAGCTGAATCCAC+GGG + chr1_1:69007721-69007740 Msa0039420:CDS 45.0%
TTTGATCCGCCATCTTCAGT+TGG - chr1_1:69007787-69007806 None:intergenic 45.0%
ACCTGCAGCTGTTAAAAGTG+AGG + chr1_1:69007807-69007826 Msa0039420:CDS 45.0%
!! TCCTCACTTTTAACAGCTGC+AGG - chr1_1:69007811-69007830 None:intergenic 45.0%
GGAAACCCCTTCAAATGTTG+AGG + chr1_1:69007828-69007847 Msa0039420:CDS 45.0%
ATCAACAGTGCATAAGTGGC+AGG - chr1_1:69007954-69007973 None:intergenic 45.0%
TCATATCTTGGGCTGAGTAG+TGG + chr1_1:69008105-69008124 Msa0039420:three_prime_UTR 45.0%
! GGCTTTGTATAAGGGTTAGG+AGG + chr1_1:69008233-69008252 Msa0039420:three_prime_UTR 45.0%
GTATAAGGGTTAGGAGGGAA+CGG + chr1_1:69008239-69008258 Msa0039420:three_prime_UTR 45.0%
!!! ATTATTGTTATTATTATTAT+TGG - chr1_1:69004998-69005017 None:intergenic 5.0%
GAGAGAGAGACTGAAGTAGG+AGG - chr1_1:68998115-68998134 None:intergenic 50.0%
ACACACACAACAACGAGCGA+TGG + chr1_1:68998155-68998174 Msa0039420:exon 50.0%
TCAGCTGTGGGAAACCCTAA+AGG + chr1_1:68998185-68998204 Msa0039420:CDS 50.0%
!! GGCGATGATGGACTCCTTTA+GGG - chr1_1:68998202-68998221 None:intergenic 50.0%
!! AGGCGATGATGGACTCCTTT+AGG - chr1_1:68998203-68998222 None:intergenic 50.0%
GAAAGTGGTCGGAGATAGAC+CGG - chr1_1:68998229-68998248 None:intergenic 50.0%
GCCGTTTACTACGTCCTTTC+TGG + chr1_1:68998273-68998292 Msa0039420:CDS 50.0%
TCTTGGAAGTTGCGGGATTG+GGG - chr1_1:68998330-68998349 None:intergenic 50.0%
CTCTTGGAAGTTGCGGGATT+GGG - chr1_1:68998331-68998350 None:intergenic 50.0%
TGAGCGTGTGTTTGGTTGTG+CGG + chr1_1:68998604-68998623 Msa0039420:intron 50.0%
ATCTTCGGTGGACATCCAAG+GGG - chr1_1:68998986-68999005 None:intergenic 50.0%
ACGAGGCAACATATCTTCGG+TGG - chr1_1:68998998-68999017 None:intergenic 50.0%
GAACGTGTGTTTGGTTGAGG+GGG - chr1_1:68999092-68999111 None:intergenic 50.0%
!! TAGGGAGTGCCTTTGTGAAG+AGG + chr1_1:68999175-68999194 Msa0039420:intron 50.0%
TGTGGCAGACCTCTTCACAA+AGG - chr1_1:68999187-68999206 None:intergenic 50.0%
TTGCTTGGCTATGCAGATGC+AGG - chr1_1:68999594-68999613 None:intergenic 50.0%
TTAAAGCGTGGCCGACCTAT+AGG - chr1_1:69001019-69001038 None:intergenic 50.0%
! TCTAAGGCACGCTTAAAGCG+TGG - chr1_1:69001031-69001050 None:intergenic 50.0%
CAGCTGTAAATGTCCCAGCT+CGG - chr1_1:69001090-69001109 None:intergenic 50.0%
! GTCCTTTGTGGTGGAGCTAT+TGG + chr1_1:69001436-69001455 Msa0039420:intron 50.0%
CTGCAGCACTCATACGTCTA+AGG - chr1_1:69001558-69001577 None:intergenic 50.0%
GCATGACCCCAAACTGTAAC+TGG + chr1_1:69001589-69001608 Msa0039420:intron 50.0%
TTGAGCCAGGGTGACCTAAA+CGG + chr1_1:69002139-69002158 Msa0039420:intron 50.0%
! GATTTCTAGAGGGACCTTCC+TGG + chr1_1:69002985-69003004 Msa0039420:intron 50.0%
! CATTTTCGTGGTAGAGGTCG+TGG - chr1_1:69003086-69003105 None:intergenic 50.0%
CACGACCTCTACCACGAAAA+TGG + chr1_1:69003084-69003103 Msa0039420:intron 50.0%
!! TATGCTCGTTTTGGTGGTCG+TGG - chr1_1:69003134-69003153 None:intergenic 50.0%
! GGTGGATATGCTCGTTTTGG+TGG - chr1_1:69003140-69003159 None:intergenic 50.0%
!!! CGTGGTGGATATGCTCGTTT+TGG - chr1_1:69003143-69003162 None:intergenic 50.0%
CATATCCACCACGTCCTCTT+TGG + chr1_1:69003150-69003169 Msa0039420:intron 50.0%
CTGGCGACAACTACATAACC+TGG - chr1_1:69003763-69003782 None:intergenic 50.0%
ACTCCTCGGATTATGTGTCC+TGG + chr1_1:69006378-69006397 Msa0039420:intron 50.0%
ACACCAGGACACATAATCCG+AGG - chr1_1:69006384-69006403 None:intergenic 50.0%
CGGATTATGTGTCCTGGTGT+TGG + chr1_1:69006384-69006403 Msa0039420:intron 50.0%
! CGTGTCGATGTCAGACACTA+AGG - chr1_1:69006415-69006434 None:intergenic 50.0%
!! AATTTTGGCCCCTCCAGAAG+TGG + chr1_1:69006570-69006589 Msa0039420:intron 50.0%
! GTTTGGTTCCACTTCTGGAG+GGG - chr1_1:69006581-69006600 None:intergenic 50.0%
ACCCGGTCCATAAAACATCC+TGG - chr1_1:69007521-69007540 None:intergenic 50.0%
! AGGATGTTTTATGGACCGGG+TGG + chr1_1:69007520-69007539 Msa0039420:intron 50.0%
ACACAACAACGAGCGATGGC+CGG + chr1_1:68998159-68998178 Msa0039420:exon 55.0%
GAGTCCATCATCGCCTACAC+CGG + chr1_1:68998207-68998226 Msa0039420:CDS 55.0%
TAGACCGGTGTAGGCGATGA+TGG - chr1_1:68998214-68998233 None:intergenic 55.0%
CTTGGAAGTTGCGGGATTGG+GGG - chr1_1:68998329-68998348 None:intergenic 55.0%
CCTCTTGGAAGTTGCGGGAT+TGG - chr1_1:68998332-68998351 None:intergenic 55.0%
CCAATCCCGCAACTTCCAAG+AGG + chr1_1:68998329-68998348 Msa0039420:CDS 55.0%
ATCCCGCAACTTCCAAGAGG+AGG + chr1_1:68998332-68998351 Msa0039420:CDS 55.0%
CTCCTCCTCTTGGAAGTTGC+GGG - chr1_1:68998337-68998356 None:intergenic 55.0%
CCTCCTCCTCTTGGAAGTTG+CGG - chr1_1:68998338-68998357 None:intergenic 55.0%
CAACTTCCAAGAGGAGGAGG+AGG + chr1_1:68998338-68998357 Msa0039420:CDS 55.0%
CACCTAGCTGAACAGGTGGT+CGG - chr1_1:68998377-68998396 None:intergenic 55.0%
GGGTTGAGTGAGCGTGTGTT+TGG + chr1_1:68998596-68998615 Msa0039420:intron 55.0%
TCTTCGGTGGACATCCAAGG+GGG - chr1_1:68998985-68999004 None:intergenic 55.0%
TGAAACAATCCGGGCGCATG+TGG - chr1_1:69000226-69000245 None:intergenic 55.0%
! AAGGCCCGTCTTGTTGCACA+AGG - chr1_1:69000503-69000522 None:intergenic 55.0%
CGAGCTGGGACATTTACAGC+TGG + chr1_1:69001088-69001107 Msa0039420:intron 55.0%
TACCTGAATGGTCCTGACGG+TGG + chr1_1:69001925-69001944 Msa0039420:intron 55.0%
ATCCACCGTCAGGACCATTC+AGG - chr1_1:69001930-69001949 None:intergenic 55.0%
TGAATGGTCCTGACGGTGGA+TGG + chr1_1:69001929-69001948 Msa0039420:intron 55.0%
CATGACCGTTTAGGTCACCC+TGG - chr1_1:69002147-69002166 None:intergenic 55.0%
AATCGCCAAAGAGGACGTGG+TGG - chr1_1:69003158-69003177 None:intergenic 55.0%
GCTGCGTCCTACAGGAACAA+TGG - chr1_1:69003231-69003250 None:intergenic 55.0%
TTCCTGTAGGACGCAGCTGA+TGG + chr1_1:69003234-69003253 Msa0039420:intron 55.0%
AACCATCAGCTGCGTCCTAC+AGG - chr1_1:69003239-69003258 None:intergenic 55.0%
! CGATTTGGGAGATGTCCCAG+AGG - chr1_1:69003681-69003700 None:intergenic 55.0%
! AAGGTGAAAAAGTGCGGCGG+CGG + chr1_1:69006072-69006091 Msa0039420:intron 55.0%
ACTAAGGCGTGTCCAACACC+AGG - chr1_1:69006399-69006418 None:intergenic 55.0%
!! TGCGCGTGTGTTTGGTTCTG+TGG - chr1_1:69007374-69007393 None:intergenic 55.0%
TGTGTGTGTGCGCGTGTGTT+TGG - chr1_1:69007382-69007401 None:intergenic 55.0%
AGCTTGACGCGTTACAGGAC+TGG + chr1_1:69007647-69007666 Msa0039420:CDS 55.0%
GCTTGACGCGTTACAGGACT+GGG + chr1_1:69007648-69007667 Msa0039420:CDS 55.0%
! GAATCCACGGGTGAAGCATC+AGG + chr1_1:69007733-69007752 Msa0039420:CDS 55.0%
AGATCCTGATGCTTCACCCG+TGG - chr1_1:69007740-69007759 None:intergenic 55.0%
AAGGGTTAGGAGGGAACGGA+AGG + chr1_1:69008243-69008262 Msa0039420:three_prime_UTR 55.0%
AGGGTTAGGAGGGAACGGAA+GGG + chr1_1:69008244-69008263 Msa0039420:three_prime_UTR 55.0%
GGTTTCCCACAGCTGAACGC+CGG - chr1_1:68998181-68998200 None:intergenic 60.0%
GGTCGGAGATAGACCGGTGT+AGG - chr1_1:68998223-68998242 None:intergenic 60.0%
AGTTGCGGGATTGGGGGTGA+AGG - chr1_1:68998323-68998342 None:intergenic 60.0%
CCGCAACTTCCAAGAGGAGG+AGG + chr1_1:68998335-68998354 Msa0039420:CDS 60.0%
GAAGCTCCTCCTCCTCCTCT+TGG - chr1_1:68998347-68998366 None:intergenic 60.0%
TGAACAGGTGGTCGGAGAGG+TGG - chr1_1:68998369-68998388 None:intergenic 60.0%
AGCTGAACAGGTGGTCGGAG+AGG - chr1_1:68998372-68998391 None:intergenic 60.0%
CTCCGACCACCTGTTCAGCT+AGG + chr1_1:68998372-68998391 Msa0039420:CDS 60.0%
GCGTGTGTTTGGTTGTGCGG+TGG + chr1_1:68998607-68998626 Msa0039420:intron 60.0%
CCTGTTGTACCACATGCGCC+CGG + chr1_1:69000214-69000233 Msa0039420:intron 60.0%
TGGTCCTGACGGTGGATGGA+TGG + chr1_1:69001933-69001952 Msa0039420:intron 60.0%
GGTCCTGACGGTGGATGGAT+GGG + chr1_1:69001934-69001953 Msa0039420:intron 60.0%
CGTGGTAGAGGTCGTGGAAG+AGG - chr1_1:69003080-69003099 None:intergenic 60.0%
CGTGGTCGAGGCAGAAGTCA+TGG - chr1_1:69003116-69003135 None:intergenic 60.0%
!! CGTTTTGGTGGTCGTGGTCG+AGG - chr1_1:69003128-69003147 None:intergenic 60.0%
CGGCGGCGGTAAGTTGTTGT+TGG + chr1_1:69006086-69006105 Msa0039420:intron 60.0%
TAGGAGGGAACGGAAGGGCT+TGG + chr1_1:69008249-69008268 Msa0039420:three_prime_UTR 60.0%
GATGGCCGGCGTTCAGCTGT+GGG + chr1_1:68998173-68998192 Msa0039420:exon 65.0%
CCGGGCGCATGTGGTACAAC+AGG - chr1_1:69000217-69000236 None:intergenic 65.0%
GGACCCATCCATCCACCGTC+AGG - chr1_1:69001940-69001959 None:intergenic 65.0%
GAGGGAACGGAAGGGCTTGG+TGG + chr1_1:69008252-69008271 Msa0039420:three_prime_UTR 65.0%
CGATGGCCGGCGTTCAGCTG+TGG + chr1_1:68998172-68998191 Msa0039420:exon 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 68998078 69008307 68998078 ID=Msa0039420;Name=Msa0039420
chr1_1 mRNA 68998078 69008307 68998078 ID=Msa0039420-mRNA-1;Parent=Msa0039420;Name=Msa0039420-mRNA-1;_AED=0.02;_eAED=0.02;_QI=96|1|1|1|1|1|2|443|221
chr1_1 exon 68998078 68998496 68998078 ID=Msa0039420-mRNA-1:exon:22609;Parent=Msa0039420-mRNA-1
chr1_1 exon 69007522 69008307 69007522 ID=Msa0039420-mRNA-1:exon:22610;Parent=Msa0039420-mRNA-1
chr1_1 five_prime_UTR 68998078 68998173 68998078 ID=Msa0039420-mRNA-1:five_prime_utr;Parent=Msa0039420-mRNA-1
chr1_1 CDS 68998174 68998496 68998174 ID=Msa0039420-mRNA-1:cds;Parent=Msa0039420-mRNA-1
chr1_1 CDS 69007522 69007864 69007522 ID=Msa0039420-mRNA-1:cds;Parent=Msa0039420-mRNA-1
chr1_1 three_prime_UTR 69007865 69008307 69007865 ID=Msa0039420-mRNA-1:three_prime_utr;Parent=Msa0039420-mRNA-1
Gene Sequence

>Msa0039420

ATGGCCGGCGTTCAGCTGTGGGAAACCCTAAAGGAGTCCATCATCGCCTACACCGGTCTATCTCCGACCACTTTCTTCACCATCTTGGCTCTTCTATTTGCCGTTTACTACGTCCTTTCTGGTCTCTTTGGCTACTCTTCTTCTGACCTTCACCCCCAATCCCGCAACTTCCAAGAGGAGGAGGAGGAGCTTCCACCTCTCCGACCACCTGTTCAGCTAGGTGAAATCACCGAAGAAGAGCTCAAGGCTTATGATGGCAACGATCATGATAAACCCTTGCTTATGGCTATTAAGGGTCAGATCTATGATGTCTCTCAGAGCAGGATGTTTTATGGACCGGGTGGACCGTATGCTTTATTTGCTGGCAAGGATGCTAGTCGAGCATTAGCAAAGATGTCTTTTGATGAGAAAGATTTGACCGGTGATATTTCTGGTCTTGGCCCATTTGAGCTTGACGCGTTACAGGACTGGGAATACAAGTTTATGGAGAAGTATGTTAAGGTCGGAACTATTAAAAAGCCAGTTACTGAAGCTGAATCCACGGGTGAAGCATCAGGATCTACTCGTGATGTTGATGCTGTTAATCCAACTGAAGATGGCGGATCAAAACCTGCAGCTGTTAAAAGTGAGGAAACCCCTTCAAATGTTGAGGCAGATAAAGAGTAA
Protein sequence

>Msa0039420

MAGVQLWETLKESIIAYTGLSPTTFFTILALLFAVYYVLSGLFGYSSSDLHPQSRNFQEEEEELPPLRPPVQLGEITEEELKAYDGNDHDKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFDEKDLTGDISGLGPFELDALQDWEYKFMEKYVKVGTIKKPVTEAESTGEASGSTRDVDAVNPTEDGGSKPAAVKSEETPSNVEADKE*