AlfalfaGEDB | Msa0445360

M. sativa cultivar zhongmu-4 / Msa0445360

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0445360	XP_003598901.1	94.737	133	7	0	1	133	1	133	3.46e-71	219

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0445360	G7J1N8	94.737	133	7	0	1	133	1	133	1.65e-71	219

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0047470	Msa0445360	0.801108	1.051961e-48	-8.615850e-47
Msa0056140	Msa0445360	-0.802769	4.793505e-49	-8.615850e-47
Msa0060350	Msa0445360	0.839043	2.006296e-57	-8.615850e-47
Msa0068410	Msa0445360	0.804402	2.197536e-49	-8.615850e-47
Msa0083160	Msa0445360	0.830091	3.569068e-55	-8.615850e-47
Msa0091480	Msa0445360	0.800985	1.114361e-48	-8.615850e-47
Msa0130800	Msa0445360	0.819580	1.077844e-52	-8.615850e-47
Msa0143970	Msa0445360	0.829791	4.223015e-55	-8.615850e-47
Msa0143980	Msa0445360	0.827951	1.177754e-54	-8.615850e-47
Msa0175530	Msa0445360	0.818699	1.710665e-52	-8.615850e-47

Showing 1 to 10 of 85 entries

Previous1 2 3 4 5…9Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0445360	MtrunA17_Chr3g0085861	94.737	133	7	0	1	133	1	133	3.18e-75	219

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0445360	AT4G31560.1	46.897	145	55	7	1	132	1	136	3.74e-26	95.9

Showing 1 to 1 of 1 entries

Previous1Next

Find 54 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGAAGCTTAAATTTG+AGG	0.419496	3_3:+19343491	Msa0445360:exon
AAATGCTAGCAGATAACCAA+TGG	0.578436	3_3:-19343598	None:intergenic
AAGAGGAAGCGCAATAGCGA+AGG	0.618409	3_3:-19341530	None:intergenic
AAGGTGGGGCCCTCAAAGAA+GGG	0.600970	3_3:-19341414	None:intergenic
AAGTGGAAATAACGTCGCCA+TGG	0.611868	3_3:-19341362	None:intergenic
AATGTGAAGGAATGAGAAAT+TGG	0.412756	3_3:-19341391	None:intergenic
AATTAAATTCTTAAATGAAA+AGG	0.427139	3_3:+19343745	Msa0445360:three_prime_UTR
AATTGACGAAGAGGAAGAAG+AGG	0.548103	3_3:+19343391	Msa0445360:CDS
AGAGGCGGAGAGTGACGGGA+AGG	0.585247	3_3:-19341433	None:intergenic
AGCACGTGTGACCACCGTCG+CGG	0.691929	3_3:-19341485	None:intergenic

Showing 1 to 10 of 54 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATTACACTATAATCCATCCA+TGG	+	chr3_3:19341345-19341364	Msa0445360:exon	30.0%
AATGTGAAGGAATGAGAAAT+TGG	-	chr3_3:19341394-19341413	None:intergenic	30.0%
TTACCTCTTCATAGAAATCT+TGG	-	chr3_3:19341609-19341628	None:intergenic	30.0%
GTTTGATGAAATTCCTCAAA+TGG	+	chr3_3:19341741-19341760	Msa0445360:intron	30.0%
TGGTTGAGCTTATGAATTAA+AGG	+	chr3_3:19341839-19341858	Msa0445360:intron	30.0%
AAAAAAGTAGTGTTGTCATC+TGG	+	chr3_3:19341933-19341952	Msa0445360:intron	30.0%
ATGGATTCTAAATTGAAGCT+AGG	-	chr3_3:19342191-19342210	None:intergenic	30.0%
CCAAATATGGAACCAAATAT+AGG	+	chr3_3:19342305-19342324	Msa0445360:intron	30.0%
TAACAAGTGTTAACAGACAT+AGG	-	chr3_3:19342667-19342686	None:intergenic	30.0%
GACAAACGATAAATCTATCT+AGG	+	chr3_3:19342691-19342710	Msa0445360:intron	30.0%

Showing 1 to 10 of 146 entries

Previous1 2 3 4 5…15Next

Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	19341277	19343788	19341277	ID=Msa0445360;Name=Msa0445360
chr3_3	mRNA	19341277	19343788	19341277	ID=Msa0445360-mRNA-1;Parent=Msa0445360;Name=Msa0445360-mRNA-1;_AED=0.05;_eAED=0.05;_QI=87\|1\|1\|1\|0.5\|0.33\|3\|238\|133
chr3_3	exon	19341277	19341624	19341277	ID=Msa0445360-mRNA-1:exon:4109;Parent=Msa0445360-mRNA-1
chr3_3	exon	19343365	19343512	19343365	ID=Msa0445360-mRNA-1:exon:4110;Parent=Msa0445360-mRNA-1
chr3_3	exon	19343558	19343788	19343558	ID=Msa0445360-mRNA-1:exon:4111;Parent=Msa0445360-mRNA-1
chr3_3	five_prime_UTR	19341277	19341363	19341277	ID=Msa0445360-mRNA-1:five_prime_utr;Parent=Msa0445360-mRNA-1
chr3_3	CDS	19341364	19341624	19341364	ID=Msa0445360-mRNA-1:cds;Parent=Msa0445360-mRNA-1
chr3_3	CDS	19343365	19343505	19343365	ID=Msa0445360-mRNA-1:cds;Parent=Msa0445360-mRNA-1
chr3_3	three_prime_UTR	19343506	19343512	19343506	ID=Msa0445360-mRNA-1:three_prime_utr;Parent=Msa0445360-mRNA-1
chr3_3	three_prime_UTR	19343558	19343788	19343558	ID=Msa0445360-mRNA-1:three_prime_utr;Parent=Msa0445360-mRNA-1

Gene Sequence

>Msa0445360

ATGGCGACGTTATTTCCACTTTCTAATCCAATTTCTCATTCCTTCACATTCCCTTCTTTGAGGGCCCCACCTTCCCGTCACTCTCCGCCTCTTCTCCTCACCGGCTGCCGGAGACCGAGAACCGCGACGGTGGTCACACGTGCTGGCGCAAGTACAAGTAGCTATGCCTTCGCTATTGCGCTTCCTCTTTCTCTCCTCGCTGTAACTGTTTTCACTGCTCTTCGGATAGGTGAGAAGCTTGACCAAGATTTCTATGAAGAGATGGCGAAGAACGAAGCTATCATGGAAATTGACGAAGAGGAAGAAGAGGATAATGATGATGATGATGTGGAAACTTATTCACAAGAAGAACAAGAACCGGTCCTTCCACGTGGCCGCAACAGGCCTAAAAGGGAAGCTTAA

Protein sequence

>Msa0445360

MATLFPLSNPISHSFTFPSLRAPPSRHSPPLLLTGCRRPRTATVVTRAGASTSSYAFAIALPLSLLAVTVFTALRIGEKLDQDFYEEMAKNEAIMEIDEEEEEDNDDDDVETYSQEEQEPVLPRGRNRPKREA*