Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0445360 | XP_003598901.1 | 94.737 | 133 | 7 | 0 | 1 | 133 | 1 | 133 | 3.46e-71 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0445360 | G7J1N8 | 94.737 | 133 | 7 | 0 | 1 | 133 | 1 | 133 | 1.65e-71 | 219 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047470 | Msa0445360 | 0.801108 | 1.051961e-48 | -8.615850e-47 |
| Msa0056140 | Msa0445360 | -0.802769 | 4.793505e-49 | -8.615850e-47 |
| Msa0060350 | Msa0445360 | 0.839043 | 2.006296e-57 | -8.615850e-47 |
| Msa0068410 | Msa0445360 | 0.804402 | 2.197536e-49 | -8.615850e-47 |
| Msa0083160 | Msa0445360 | 0.830091 | 3.569068e-55 | -8.615850e-47 |
| Msa0091480 | Msa0445360 | 0.800985 | 1.114361e-48 | -8.615850e-47 |
| Msa0130800 | Msa0445360 | 0.819580 | 1.077844e-52 | -8.615850e-47 |
| Msa0143970 | Msa0445360 | 0.829791 | 4.223015e-55 | -8.615850e-47 |
| Msa0143980 | Msa0445360 | 0.827951 | 1.177754e-54 | -8.615850e-47 |
| Msa0175530 | Msa0445360 | 0.818699 | 1.710665e-52 | -8.615850e-47 |
| Msa0181020 | Msa0445360 | 0.820878 | 5.434183e-53 | -8.615850e-47 |
| Msa0198290 | Msa0445360 | 0.808082 | 3.688330e-50 | -8.615850e-47 |
| Msa0199730 | Msa0445360 | 0.818727 | 1.685165e-52 | -8.615850e-47 |
| Msa0206940 | Msa0445360 | 0.806495 | 8.001377e-50 | -8.615850e-47 |
| Msa0223390 | Msa0445360 | 0.804625 | 1.974355e-49 | -8.615850e-47 |
| Msa0367370 | Msa0445360 | 0.809843 | 1.548689e-50 | -8.615850e-47 |
| Msa0387790 | Msa0445360 | 0.822661 | 2.101852e-53 | -8.615850e-47 |
| Msa0413740 | Msa0445360 | 0.825525 | 4.471079e-54 | -8.615850e-47 |
| Msa0445360 | Msa0448120 | 0.808914 | 2.450606e-50 | -8.615850e-47 |
| Msa0445360 | Msa0468020 | 0.803643 | 3.160188e-49 | -8.615850e-47 |
| Msa0445360 | Msa0486530 | 0.802145 | 6.445296e-49 | -8.615850e-47 |
| Msa0445360 | Msa0505390 | 0.828078 | 1.097954e-54 | -8.615850e-47 |
| Msa0445360 | Msa0507190 | 0.810308 | 1.229722e-50 | -8.615850e-47 |
| Msa0445360 | Msa0512310 | 0.835302 | 1.816033e-56 | -8.615850e-47 |
| Msa0445360 | Msa0530930 | 0.816342 | 5.811294e-52 | -8.615850e-47 |
| Msa0445360 | Msa0539320 | 0.805341 | 1.398826e-49 | -8.615850e-47 |
| Msa0445360 | Msa0540520 | 0.801810 | 7.552090e-49 | -8.615850e-47 |
| Msa0445360 | Msa0542040 | 0.807950 | 3.935296e-50 | -8.615850e-47 |
| Msa0445360 | Msa0549740 | 0.811071 | 8.410070e-51 | -8.615850e-47 |
| Msa0445360 | Msa0555980 | 0.820516 | 6.580607e-53 | -8.615850e-47 |
| Msa0445360 | Msa0587900 | 0.813850 | 2.076885e-51 | -8.615850e-47 |
| Msa0445360 | Msa0619330 | 0.814453 | 1.528555e-51 | -8.615850e-47 |
| Msa0445360 | Msa0628060 | 0.826536 | 2.570402e-54 | -8.615850e-47 |
| Msa0445360 | Msa0646390 | 0.812760 | 3.605012e-51 | -8.615850e-47 |
| Msa0445360 | Msa0649310 | 0.833602 | 4.853844e-56 | -8.615850e-47 |
| Msa0445360 | Msa0651400 | 0.810871 | 9.289965e-51 | -8.615850e-47 |
| Msa0445360 | Msa0667970 | 0.827706 | 1.349359e-54 | -8.615850e-47 |
| Msa0445360 | Msa0690350 | 0.818439 | 1.959092e-52 | -8.615850e-47 |
| Msa0445360 | Msa0690720 | 0.810820 | 9.529394e-51 | -8.615850e-47 |
| Msa0445360 | Msa0692910 | 0.810152 | 1.328817e-50 | -8.615850e-47 |
| Msa0445360 | Msa0697540 | 0.806210 | 9.186752e-50 | -8.615850e-47 |
| Msa0445360 | Msa0719340 | 0.810898 | 9.169247e-51 | -8.615850e-47 |
| Msa0445360 | Msa0758860 | 0.802094 | 6.602795e-49 | -8.615850e-47 |
| Msa0445360 | Msa0808420 | 0.814346 | 1.614609e-51 | -8.615850e-47 |
| Msa0445360 | Msa0824140 | 0.805662 | 1.197885e-49 | -8.615850e-47 |
| Msa0445360 | Msa0848380 | 0.803631 | 3.179607e-49 | -8.615850e-47 |
| Msa0445360 | Msa0863250 | 0.822484 | 2.311364e-53 | -8.615850e-47 |
| Msa0445360 | Msa0884730 | 0.802380 | 5.766900e-49 | -8.615850e-47 |
| Msa0445360 | Msa0890250 | 0.831088 | 2.035587e-55 | -8.615850e-47 |
| Msa0445360 | Msa0934830 | 0.800108 | 1.682384e-48 | -8.615850e-47 |
| Msa0445360 | Msa0950620 | 0.802039 | 6.776868e-49 | -8.615850e-47 |
| Msa0445360 | Msa0971860 | 0.812147 | 4.908416e-51 | -8.615850e-47 |
| Msa0445360 | Msa0981740 | 0.812820 | 3.497746e-51 | -8.615850e-47 |
| Msa0445360 | Msa1029320 | 0.807812 | 4.210748e-50 | -8.615850e-47 |
| Msa0445360 | Msa1038320 | 0.805247 | 1.463896e-49 | -8.615850e-47 |
| Msa0445360 | Msa1046890 | 0.815260 | 1.012796e-51 | -8.615850e-47 |
| Msa0445360 | Msa1055360 | 0.809268 | 2.058049e-50 | -8.615850e-47 |
| Msa0445360 | Msa1080460 | 0.818257 | 2.153660e-52 | -8.615850e-47 |
| Msa0445360 | Msa1080620 | 0.814929 | 1.199594e-51 | -8.615850e-47 |
| Msa0445360 | Msa1080690 | 0.814957 | 1.182059e-51 | -8.615850e-47 |
| Msa0445360 | Msa1102540 | 0.807802 | 4.229517e-50 | -8.615850e-47 |
| Msa0445360 | Msa1130650 | 0.822257 | 2.609614e-53 | -8.615850e-47 |
| Msa0445360 | Msa1130660 | 0.814556 | 1.450710e-51 | -8.615850e-47 |
| Msa0445360 | Msa1130730 | 0.826854 | 2.158223e-54 | -8.615850e-47 |
| Msa0445360 | Msa1183730 | 0.820219 | 7.699851e-53 | -8.615850e-47 |
| Msa0445360 | Msa1226600 | 0.805071 | 1.593257e-49 | -8.615850e-47 |
| Msa0445360 | Msa1238700 | 0.808961 | 2.394184e-50 | -8.615850e-47 |
| Msa0445360 | Msa1262310 | 0.836410 | 9.510180e-57 | -8.615850e-47 |
| Msa0445360 | Msa1341790 | 0.805267 | 1.449750e-49 | -8.615850e-47 |
| Msa0445360 | Msa1349360 | 0.815051 | 1.126897e-51 | -8.615850e-47 |
| Msa0445360 | Msa1418200 | 0.840611 | 7.834556e-58 | -8.615850e-47 |
| Msa0445360 | Msa1423190 | 0.807366 | 5.236207e-50 | -8.615850e-47 |
| Msa0445360 | Msa1428420 | 0.807718 | 4.407903e-50 | -8.615850e-47 |
| Msa0445360 | Msa1431730 | 0.817889 | 2.608403e-52 | -8.615850e-47 |
| Msa0445360 | Msa1449740 | 0.800600 | 1.335514e-48 | -8.615850e-47 |
| Msa0445360 | Msa1458920 | 0.809663 | 1.693154e-50 | -8.615850e-47 |
| Msa0445360 | Msa1466350 | 0.821868 | 3.210946e-53 | -8.615850e-47 |
| Msa0242290 | Msa0445360 | 0.826780 | 2.247748e-54 | -8.615850e-47 |
| Msa0246700 | Msa0445360 | -0.819368 | 1.205174e-52 | -8.615850e-47 |
| Msa0282860 | Msa0445360 | 0.806076 | 9.804735e-50 | -8.615850e-47 |
| Msa0296610 | Msa0445360 | 0.806406 | 8.353920e-50 | -8.615850e-47 |
| Msa0318270 | Msa0445360 | 0.824253 | 8.920500e-54 | -8.615850e-47 |
| Msa0318310 | Msa0445360 | 0.818869 | 1.565133e-52 | -8.615850e-47 |
| Msa0350910 | Msa0445360 | 0.848099 | 7.603807e-60 | -8.615850e-47 |
| Msa0354390 | Msa0445360 | 0.802609 | 5.173671e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0445360 | MtrunA17_Chr3g0085861 | 94.737 | 133 | 7 | 0 | 1 | 133 | 1 | 133 | 3.18e-75 | 219 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0445360 | AT4G31560.1 | 46.897 | 145 | 55 | 7 | 1 | 132 | 1 | 136 | 3.74e-26 | 95.9 |
Find 54 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGCCGCAACAGGCCTAAA+AGG | 0.219871 | 3_3:+19343474 | Msa0445360:CDS |
| TCCTTCCACGTGGCCGCAAC+AGG | 0.325588 | 3_3:+19343465 | Msa0445360:CDS |
| CCTTCACATTCCCTTCTTTG+AGG | 0.326884 | 3_3:+19341404 | Msa0445360:CDS |
| CTTCACATTCCCTTCTTTGA+GGG | 0.346825 | 3_3:+19341405 | Msa0445360:CDS |
| GTGACCACCGTCGCGGTTCT+CGG | 0.360693 | 3_3:-19341478 | None:intergenic |
| TTACCTCTTCATAGAAATCT+TGG | 0.361085 | 3_3:-19341606 | None:intergenic |
| TATAAAGGGTTTATAATGTA+AGG | 0.367183 | 3_3:+19343667 | Msa0445360:three_prime_UTR |
| TGTGGATGATGAAATTGTTT+TGG | 0.373433 | 3_3:-19341310 | None:intergenic |
| TCTGATATGTAAGCTTATAA+AGG | 0.377323 | 3_3:+19343652 | Msa0445360:three_prime_UTR |
| CTGATATGTAAGCTTATAAA+GGG | 0.391777 | 3_3:+19343653 | Msa0445360:three_prime_UTR |
| CTCTTCTCCTCACCGGCTGC+CGG | 0.412074 | 3_3:+19341452 | Msa0445360:CDS |
| AATGTGAAGGAATGAGAAAT+TGG | 0.412756 | 3_3:-19341391 | None:intergenic |
| GAAGGTGGGGCCCTCAAAGA+AGG | 0.418110 | 3_3:-19341415 | None:intergenic |
| AAAAGGGAAGCTTAAATTTG+AGG | 0.419496 | 3_3:+19343491 | Msa0445360:exon |
| AATTAAATTCTTAAATGAAA+AGG | 0.427139 | 3_3:+19343745 | Msa0445360:three_prime_UTR |
| GAGAAGAGGCGGAGAGTGAC+GGG | 0.435487 | 3_3:-19341437 | None:intergenic |
| TAGGGGAGGTGTTTATCTAT+AGG | 0.456479 | 3_3:+19343550 | Msa0445360:intron |
| TCTCTTAGTTCATGTTCCAT+TGG | 0.463587 | 3_3:+19343582 | Msa0445360:three_prime_UTR |
| GCCTGTTGCGGCCACGTGGA+AGG | 0.472208 | 3_3:-19343466 | None:intergenic |
| CCGTCGCGGTTCTCGGTCTC+CGG | 0.473735 | 3_3:-19341471 | None:intergenic |
| GCGGAGAGTGACGGGAAGGT+GGG | 0.476304 | 3_3:-19341429 | None:intergenic |
| GGCGAAGAACGAAGCTATCA+TGG | 0.476969 | 3_3:+19343367 | Msa0445360:CDS |
| TTCACAAGAAGAACAAGAAC+CGG | 0.477138 | 3_3:+19343442 | Msa0445360:CDS |
| TGAGAAATTGGATTAGAAAG+TGG | 0.481568 | 3_3:-19341379 | None:intergenic |
| GCGACGGTGGTCACACGTGC+TGG | 0.481713 | 3_3:+19341487 | Msa0445360:CDS |
| GGAAATAACGTCGCCATGGA+TGG | 0.482119 | 3_3:-19341358 | None:intergenic |
| GGTTCTCGGTCTCCGGCAGC+CGG | 0.492759 | 3_3:-19341464 | None:intergenic |
| TTGCGGCCACGTGGAAGGAC+CGG | 0.505790 | 3_3:-19343461 | None:intergenic |
| GGCGGAGAGTGACGGGAAGG+TGG | 0.506011 | 3_3:-19341430 | None:intergenic |
| TGGCCGCAACAGGCCTAAAA+GGG | 0.513982 | 3_3:+19343475 | Msa0445360:CDS |
| GTTACAGCGAGGAGAGAAAG+AGG | 0.517475 | 3_3:-19341547 | None:intergenic |
| CGGCAGCCGGTGAGGAGAAG+AGG | 0.525624 | 3_3:-19341451 | None:intergenic |
| TGACCAAGATTTCTATGAAG+AGG | 0.531554 | 3_3:+19341603 | Msa0445360:CDS |
| GGAGAAGAGGCGGAGAGTGA+CGG | 0.547654 | 3_3:-19341438 | None:intergenic |
| AATTGACGAAGAGGAAGAAG+AGG | 0.548103 | 3_3:+19343391 | Msa0445360:CDS |
| TCGGTCTCCGGCAGCCGGTG+AGG | 0.549955 | 3_3:-19341459 | None:intergenic |
| CAGCCGGTGAGGAGAAGAGG+CGG | 0.566616 | 3_3:-19341448 | None:intergenic |
| CGGAGAGTGACGGGAAGGTG+GGG | 0.569758 | 3_3:-19341428 | None:intergenic |
| AAATGCTAGCAGATAACCAA+TGG | 0.578436 | 3_3:-19343598 | None:intergenic |
| AGAGGCGGAGAGTGACGGGA+AGG | 0.585247 | 3_3:-19341433 | None:intergenic |
| TCTCCGCCTCTTCTCCTCAC+CGG | 0.592192 | 3_3:+19341445 | Msa0445360:CDS |
| AAGGTGGGGCCCTCAAAGAA+GGG | 0.600970 | 3_3:-19341414 | None:intergenic |
| TATCATGGAAATTGACGAAG+AGG | 0.608853 | 3_3:+19343382 | Msa0445360:CDS |
| AAGTGGAAATAACGTCGCCA+TGG | 0.611868 | 3_3:-19341362 | None:intergenic |
| AAGAGGAAGCGCAATAGCGA+AGG | 0.618409 | 3_3:-19341530 | None:intergenic |
| ATTACACTATAATCCATCCA+TGG | 0.618731 | 3_3:+19341345 | Msa0445360:exon |
| TTAGGCCTGTTGCGGCCACG+TGG | 0.641712 | 3_3:-19343470 | None:intergenic |
| GAGACCGAGAACCGCGACGG+TGG | 0.655284 | 3_3:+19341474 | Msa0445360:CDS |
| TGTAATCTATTCGTGTAGTG+TGG | 0.656296 | 3_3:-19341328 | None:intergenic |
| CCGGAGACCGAGAACCGCGA+CGG | 0.661053 | 3_3:+19341471 | Msa0445360:CDS |
| CCTCAAAGAAGGGAATGTGA+AGG | 0.679667 | 3_3:-19341404 | None:intergenic |
| AGCACGTGTGACCACCGTCG+CGG | 0.691929 | 3_3:-19341485 | None:intergenic |
| CAAGAACCGGTCCTTCCACG+TGG | 0.698218 | 3_3:+19343455 | Msa0445360:CDS |
| CAGTGAAAACAGTTACAGCG+AGG | 0.729313 | 3_3:-19341558 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCATTTAAGAATTTAAT+TGG | - | chr3_3:19343746-19343765 | None:intergenic | 10.0% |
| !! | AATTAAATTCTTAAATGAAA+AGG | + | chr3_3:19343745-19343764 | Msa0445360:three_prime_UTR | 10.0% |
| !! | AAAACAAAACAATGTAAATT+TGG | - | chr3_3:19342009-19342028 | None:intergenic | 15.0% |
| !!! | CATCTTTAAAAATAAATCTT+TGG | + | chr3_3:19342946-19342965 | Msa0445360:intron | 15.0% |
| !! | AGTATATTAAATATTCATTG+AGG | - | chr3_3:19343104-19343123 | None:intergenic | 15.0% |
| !!! | TAGTAATTTTTTATCTACAT+TGG | - | chr3_3:19343707-19343726 | None:intergenic | 15.0% |
| !!! | AACTTCAAGTTAATCAATTA+TGG | + | chr3_3:19342450-19342469 | Msa0445360:intron | 20.0% |
| !!! | AAATTGATTTTGAGATGTTT+GGG | - | chr3_3:19342503-19342522 | None:intergenic | 20.0% |
| !!! | AAAATTGATTTTGAGATGTT+TGG | - | chr3_3:19342504-19342523 | None:intergenic | 20.0% |
| !! | GAAATCTAAATTACAGTAAT+TGG | - | chr3_3:19342593-19342612 | None:intergenic | 20.0% |
| !! | TCATGTTAGAAATTTCTTTA+TGG | - | chr3_3:19342841-19342860 | None:intergenic | 20.0% |
| !!! | TGAAAATTTCTCTTATGTTT+TGG | + | chr3_3:19343023-19343042 | Msa0445360:intron | 20.0% |
| !!! | GAAAATTTCTCTTATGTTTT+GGG | + | chr3_3:19343024-19343043 | Msa0445360:intron | 20.0% |
| !!! | ACTTTTTTGGAAATATTTGT+CGG | + | chr3_3:19343294-19343313 | Msa0445360:intron | 20.0% |
| !!! | ATGTTTTTTTTAATACCAGA+TGG | + | chr3_3:19343346-19343365 | Msa0445360:intron | 20.0% |
| !! | TATAAAGGGTTTATAATGTA+AGG | + | chr3_3:19343667-19343686 | Msa0445360:three_prime_UTR | 20.0% |
| !! | CAACTTTACAAAGCAAATTT+TGG | - | chr3_3:19341641-19341660 | None:intergenic | 25.0% |
| ! | TTTGATGAAATTCCTCAAAT+GGG | + | chr3_3:19341742-19341761 | Msa0445360:intron | 25.0% |
| ! | TTATGTTAGTATTTGAACTC+TGG | - | chr3_3:19341883-19341902 | None:intergenic | 25.0% |
| !!! | CTTCAATTTAGAATCCATTT+TGG | + | chr3_3:19342193-19342212 | Msa0445360:intron | 25.0% |
| !! | TTAGAATCCATTTTGGATTT+TGG | + | chr3_3:19342200-19342219 | Msa0445360:intron | 25.0% |
| !!! | TGCGTAAAATTGATTGATTT+TGG | - | chr3_3:19342263-19342282 | None:intergenic | 25.0% |
| !! | TACGCATTTAGAATCAATTA+TGG | + | chr3_3:19342277-19342296 | Msa0445360:intron | 25.0% |
| !! | ACGCATTTAGAATCAATTAT+GGG | + | chr3_3:19342278-19342297 | Msa0445360:intron | 25.0% |
| !!! | ACTTACTTTTAGCCTATATT+TGG | - | chr3_3:19342320-19342339 | None:intergenic | 25.0% |
| ! | TGGAATGTGTTTAACATATA+AGG | + | chr3_3:19342742-19342761 | Msa0445360:intron | 25.0% |
| ! | ACATATAAGGTCAGAAATAT+AGG | + | chr3_3:19342755-19342774 | Msa0445360:intron | 25.0% |
| ! | ACAATCTGGAAAATTTCTTA+AGG | - | chr3_3:19342893-19342912 | None:intergenic | 25.0% |
| ! | TATTAGTGAGTTAACTGTTT+CGG | - | chr3_3:19343147-19343166 | None:intergenic | 25.0% |
| ! | TTATAATTACCAGCTCAATA+AGG | + | chr3_3:19343202-19343221 | Msa0445360:intron | 25.0% |
| ! | AATTAGAAATTTGTGAACAG+AGG | - | chr3_3:19343247-19343266 | None:intergenic | 25.0% |
| ! | CAAATATTTCCAAAAAAGTG+TGG | - | chr3_3:19343293-19343312 | None:intergenic | 25.0% |
| ! | AAAAACATGTCACAAAAACA+GGG | - | chr3_3:19343334-19343353 | None:intergenic | 25.0% |
| ! | AAAAAACATGTCACAAAAAC+AGG | - | chr3_3:19343335-19343354 | None:intergenic | 25.0% |
| ! | AGTAAACTTGCAAATGAATA+GGG | + | chr3_3:19343522-19343541 | Msa0445360:intron | 25.0% |
| ! | TCTGATATGTAAGCTTATAA+AGG | + | chr3_3:19343652-19343671 | Msa0445360:three_prime_UTR | 25.0% |
| ! | CTGATATGTAAGCTTATAAA+GGG | + | chr3_3:19343653-19343672 | Msa0445360:three_prime_UTR | 25.0% |
| ! | TGTGGATGATGAAATTGTTT+TGG | - | chr3_3:19341313-19341332 | None:intergenic | 30.0% |
| ATTACACTATAATCCATCCA+TGG | + | chr3_3:19341345-19341364 | Msa0445360:exon | 30.0% | |
| ! | TGAGAAATTGGATTAGAAAG+TGG | - | chr3_3:19341382-19341401 | None:intergenic | 30.0% |
| AATGTGAAGGAATGAGAAAT+TGG | - | chr3_3:19341394-19341413 | None:intergenic | 30.0% | |
| TTACCTCTTCATAGAAATCT+TGG | - | chr3_3:19341609-19341628 | None:intergenic | 30.0% | |
| GTTTGATGAAATTCCTCAAA+TGG | + | chr3_3:19341741-19341760 | Msa0445360:intron | 30.0% | |
| TGGTTGAGCTTATGAATTAA+AGG | + | chr3_3:19341839-19341858 | Msa0445360:intron | 30.0% | |
| AAAAAAGTAGTGTTGTCATC+TGG | + | chr3_3:19341933-19341952 | Msa0445360:intron | 30.0% | |
| ATGGATTCTAAATTGAAGCT+AGG | - | chr3_3:19342191-19342210 | None:intergenic | 30.0% | |
| ! | CCTATATTTGGTTCCATATT+TGG | - | chr3_3:19342308-19342327 | None:intergenic | 30.0% |
| CCAAATATGGAACCAAATAT+AGG | + | chr3_3:19342305-19342324 | Msa0445360:intron | 30.0% | |
| TAACAAGTGTTAACAGACAT+AGG | - | chr3_3:19342667-19342686 | None:intergenic | 30.0% | |
| GACAAACGATAAATCTATCT+AGG | + | chr3_3:19342691-19342710 | Msa0445360:intron | 30.0% | |
| ATCAACGTTAATTGAGTGTA+AGG | - | chr3_3:19342796-19342815 | None:intergenic | 30.0% | |
| TATAACATGTCTCTACAATC+TGG | - | chr3_3:19342907-19342926 | None:intergenic | 30.0% | |
| TTTCATCATAACTTGAGAGA+TGG | + | chr3_3:19342999-19343018 | Msa0445360:intron | 30.0% | |
| ACAGTTAACTCACTAATATC+TGG | + | chr3_3:19343149-19343168 | Msa0445360:intron | 30.0% | |
| ATAGATATTCCTTATTGAGC+TGG | - | chr3_3:19343214-19343233 | None:intergenic | 30.0% | |
| !!! | GATTCTTAACCACACTTTTT+TGG | + | chr3_3:19343281-19343300 | Msa0445360:intron | 30.0% |
| ! | CAAATTTAAGCTTCCCTTTT+AGG | - | chr3_3:19343491-19343510 | None:intergenic | 30.0% |
| AAAAGGGAAGCTTAAATTTG+AGG | + | chr3_3:19343491-19343510 | Msa0445360:exon | 30.0% | |
| CAGTAAACTTGCAAATGAAT+AGG | + | chr3_3:19343521-19343540 | Msa0445360:intron | 30.0% | |
| TGTAATCTATTCGTGTAGTG+TGG | - | chr3_3:19341331-19341350 | None:intergenic | 35.0% | |
| ! | TAACTGTTTTCACTGCTCTT+CGG | + | chr3_3:19341566-19341585 | Msa0445360:CDS | 35.0% |
| TGACCAAGATTTCTATGAAG+AGG | + | chr3_3:19341603-19341622 | Msa0445360:CDS | 35.0% | |
| GAGGAATTTCATCAAACACA+TGG | - | chr3_3:19341738-19341757 | None:intergenic | 35.0% | |
| CTTATGAATTAAAGGAGCGA+AGG | + | chr3_3:19341847-19341866 | Msa0445360:intron | 35.0% | |
| ! | GAATCCATTTTGGATTTTGG+AGG | + | chr3_3:19342203-19342222 | Msa0445360:intron | 35.0% |
| TTTGCCTCCAAAATCCAAAA+TGG | - | chr3_3:19342210-19342229 | None:intergenic | 35.0% | |
| AATTATGGGTGCTCCAAATA+TGG | + | chr3_3:19342292-19342311 | Msa0445360:intron | 35.0% | |
| TGATGCATTCGTGTATGTAA+AGG | + | chr3_3:19342363-19342382 | Msa0445360:intron | 35.0% | |
| TATCATGGAAATTGACGAAG+AGG | + | chr3_3:19343382-19343401 | Msa0445360:CDS | 35.0% | |
| ! | GGATAATGATGATGATGATG+TGG | + | chr3_3:19343412-19343431 | Msa0445360:CDS | 35.0% |
| TTCACAAGAAGAACAAGAAC+CGG | + | chr3_3:19343442-19343461 | Msa0445360:CDS | 35.0% | |
| AAACTTGCAAATGAATAGGG+AGG | + | chr3_3:19343525-19343544 | Msa0445360:intron | 35.0% | |
| CAAATGAATAGGGAGGAATA+GGG | + | chr3_3:19343532-19343551 | Msa0445360:intron | 35.0% | |
| AAATGAATAGGGAGGAATAG+GGG | + | chr3_3:19343533-19343552 | Msa0445360:intron | 35.0% | |
| TCTCTTAGTTCATGTTCCAT+TGG | + | chr3_3:19343582-19343601 | Msa0445360:three_prime_UTR | 35.0% | |
| AAATGCTAGCAGATAACCAA+TGG | - | chr3_3:19343601-19343620 | None:intergenic | 35.0% | |
| CTTCACATTCCCTTCTTTGA+GGG | + | chr3_3:19341405-19341424 | Msa0445360:CDS | 40.0% | |
| AATTGCGCAAAACCCATTTG+AGG | - | chr3_3:19341757-19341776 | None:intergenic | 40.0% | |
| TAAAGGAGCGAAGGAGTTAA+AGG | + | chr3_3:19341856-19341875 | Msa0445360:intron | 40.0% | |
| GTCATCTGGTTGAATGAATG+TGG | + | chr3_3:19341947-19341966 | Msa0445360:intron | 40.0% | |
| TTCGTGTATGTAAAGGTGAG+TGG | + | chr3_3:19342370-19342389 | Msa0445360:intron | 40.0% | |
| TCCACTAAGCAACTCTACAA+CGG | - | chr3_3:19342560-19342579 | None:intergenic | 40.0% | |
| CCAAAATAAGCCTTCTGAGT+CGG | + | chr3_3:19342619-19342638 | Msa0445360:intron | 40.0% | |
| TCACATAGCTAAAGTTGCAC+AGG | - | chr3_3:19342864-19342883 | None:intergenic | 40.0% | |
| ! | CAGATGTGTGCATGGATTAA+AGG | - | chr3_3:19343073-19343092 | None:intergenic | 40.0% |
| TAACTGATCAGATGTGTGCA+TGG | - | chr3_3:19343081-19343100 | None:intergenic | 40.0% | |
| AATTGACGAAGAGGAAGAAG+AGG | + | chr3_3:19343391-19343410 | Msa0445360:CDS | 40.0% | |
| GCAAATGAATAGGGAGGAAT+AGG | + | chr3_3:19343531-19343550 | Msa0445360:intron | 40.0% | |
| !! | TAGGGGAGGTGTTTATCTAT+AGG | + | chr3_3:19343550-19343569 | Msa0445360:intron | 40.0% |
| AAGTGGAAATAACGTCGCCA+TGG | - | chr3_3:19341365-19341384 | None:intergenic | 45.0% | |
| CCTCAAAGAAGGGAATGTGA+AGG | - | chr3_3:19341407-19341426 | None:intergenic | 45.0% | |
| CCTTCACATTCCCTTCTTTG+AGG | + | chr3_3:19341404-19341423 | Msa0445360:CDS | 45.0% | |
| CAGTGAAAACAGTTACAGCG+AGG | - | chr3_3:19341561-19341580 | None:intergenic | 45.0% | |
| ! | GTTTTCACTGCTCTTCGGAT+AGG | + | chr3_3:19341571-19341590 | Msa0445360:CDS | 45.0% |
| ATACAAGCAGTGTTGCCATC+TGG | + | chr3_3:19341797-19341816 | Msa0445360:intron | 45.0% | |
| TACAAGCAGTGTTGCCATCT+GGG | + | chr3_3:19341798-19341817 | Msa0445360:intron | 45.0% | |
| TGAGATGTTTGGGTGCTCTT+GGG | - | chr3_3:19342493-19342512 | None:intergenic | 45.0% | |
| TTGAGATGTTTGGGTGCTCT+TGG | - | chr3_3:19342494-19342513 | None:intergenic | 45.0% | |
| TCCGTTGTAGAGTTGCTTAG+TGG | + | chr3_3:19342556-19342575 | Msa0445360:intron | 45.0% | |
| ! | CCGACTCAGAAGGCTTATTT+TGG | - | chr3_3:19342622-19342641 | None:intergenic | 45.0% |
| ACATTCCAAGTCATGCAGCA+TGG | - | chr3_3:19342730-19342749 | None:intergenic | 45.0% | |
| GGAAATAACGTCGCCATGGA+TGG | - | chr3_3:19341361-19341380 | None:intergenic | 50.0% | |
| ! | AAGAGGAAGCGCAATAGCGA+AGG | - | chr3_3:19341533-19341552 | None:intergenic | 50.0% |
| GTTACAGCGAGGAGAGAAAG+AGG | - | chr3_3:19341550-19341569 | None:intergenic | 50.0% | |
| ACAAGCAGTGTTGCCATCTG+GGG | + | chr3_3:19341799-19341818 | Msa0445360:intron | 50.0% | |
| ! | GGAAGATCAACCGACTCAGA+AGG | - | chr3_3:19342632-19342651 | None:intergenic | 50.0% |
| GAGTCGGTTGATCTTCCCTT+TGG | + | chr3_3:19342635-19342654 | Msa0445360:intron | 50.0% | |
| AGACATAGGCGCATGCCAAA+GGG | - | chr3_3:19342653-19342672 | None:intergenic | 50.0% | |
| AAGTGCCATGCTGCATGACT+TGG | + | chr3_3:19342722-19342741 | Msa0445360:intron | 50.0% | |
| TAGCTTCGTTCTTCGCCATC+TGG | - | chr3_3:19343364-19343383 | None:intergenic | 50.0% | |
| GGCGAAGAACGAAGCTATCA+TGG | + | chr3_3:19343367-19343386 | Msa0445360:CDS | 50.0% | |
| ! | CTTCCCTTTTAGGCCTGTTG+CGG | - | chr3_3:19343481-19343500 | None:intergenic | 50.0% |
| TGAATAGGGAGGAATAGGGG+AGG | + | chr3_3:19343536-19343555 | Msa0445360:intron | 50.0% | |
| AAGGTGGGGCCCTCAAAGAA+GGG | - | chr3_3:19341417-19341436 | None:intergenic | 55.0% | |
| CAAGCAGTGTTGCCATCTGG+GGG | + | chr3_3:19341800-19341819 | Msa0445360:intron | 55.0% | |
| TGTTGCCATCTGGGGGAGTT+GGG | + | chr3_3:19341807-19341826 | Msa0445360:intron | 55.0% | |
| GGGGAGTTGGGTAGCTCATT+TGG | + | chr3_3:19341819-19341838 | Msa0445360:intron | 55.0% | |
| CAGACATAGGCGCATGCCAA+AGG | - | chr3_3:19342654-19342673 | None:intergenic | 55.0% | |
| TGGCCGCAACAGGCCTAAAA+GGG | + | chr3_3:19343475-19343494 | Msa0445360:CDS | 55.0% | |
| GAAGGTGGGGCCCTCAAAGA+AGG | - | chr3_3:19341418-19341437 | None:intergenic | 60.0% | |
| GAGAAGAGGCGGAGAGTGAC+GGG | - | chr3_3:19341440-19341459 | None:intergenic | 60.0% | |
| GGAGAAGAGGCGGAGAGTGA+CGG | - | chr3_3:19341441-19341460 | None:intergenic | 60.0% | |
| TCTCCGCCTCTTCTCCTCAC+CGG | + | chr3_3:19341445-19341464 | Msa0445360:CDS | 60.0% | |
| GTGTTGCCATCTGGGGGAGT+TGG | + | chr3_3:19341806-19341825 | Msa0445360:intron | 60.0% | |
| AGCTACCCAACTCCCCCAGA+TGG | - | chr3_3:19341815-19341834 | None:intergenic | 60.0% | |
| CAAGAACCGGTCCTTCCACG+TGG | + | chr3_3:19343455-19343474 | Msa0445360:CDS | 60.0% | |
| GTGGCCGCAACAGGCCTAAA+AGG | + | chr3_3:19343474-19343493 | Msa0445360:CDS | 60.0% | |
| ! | CGGAGAGTGACGGGAAGGTG+GGG | - | chr3_3:19341431-19341450 | None:intergenic | 65.0% |
| ! | GCGGAGAGTGACGGGAAGGT+GGG | - | chr3_3:19341432-19341451 | None:intergenic | 65.0% |
| ! | AGAGGCGGAGAGTGACGGGA+AGG | - | chr3_3:19341436-19341455 | None:intergenic | 65.0% |
| CAGCCGGTGAGGAGAAGAGG+CGG | - | chr3_3:19341451-19341470 | None:intergenic | 65.0% | |
| ! | CTCTTCTCCTCACCGGCTGC+CGG | + | chr3_3:19341452-19341471 | Msa0445360:CDS | 65.0% |
| GTGACCACCGTCGCGGTTCT+CGG | - | chr3_3:19341481-19341500 | None:intergenic | 65.0% | |
| AGCACGTGTGACCACCGTCG+CGG | - | chr3_3:19341488-19341507 | None:intergenic | 65.0% | |
| TTGCGGCCACGTGGAAGGAC+CGG | - | chr3_3:19343464-19343483 | None:intergenic | 65.0% | |
| TCCTTCCACGTGGCCGCAAC+AGG | + | chr3_3:19343465-19343484 | Msa0445360:CDS | 65.0% | |
| TTAGGCCTGTTGCGGCCACG+TGG | - | chr3_3:19343473-19343492 | None:intergenic | 65.0% | |
| ! | GGCGGAGAGTGACGGGAAGG+TGG | - | chr3_3:19341433-19341452 | None:intergenic | 70.0% |
| CGGCAGCCGGTGAGGAGAAG+AGG | - | chr3_3:19341454-19341473 | None:intergenic | 70.0% | |
| GGTTCTCGGTCTCCGGCAGC+CGG | - | chr3_3:19341467-19341486 | None:intergenic | 70.0% | |
| CCGTCGCGGTTCTCGGTCTC+CGG | - | chr3_3:19341474-19341493 | None:intergenic | 70.0% | |
| CCGGAGACCGAGAACCGCGA+CGG | + | chr3_3:19341471-19341490 | Msa0445360:CDS | 70.0% | |
| GAGACCGAGAACCGCGACGG+TGG | + | chr3_3:19341474-19341493 | Msa0445360:CDS | 70.0% | |
| GCGACGGTGGTCACACGTGC+TGG | + | chr3_3:19341487-19341506 | Msa0445360:CDS | 70.0% | |
| GCCTGTTGCGGCCACGTGGA+AGG | - | chr3_3:19343469-19343488 | None:intergenic | 70.0% | |
| TCGGTCTCCGGCAGCCGGTG+AGG | - | chr3_3:19341462-19341481 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 19341277 | 19343788 | 19341277 | ID=Msa0445360;Name=Msa0445360 |
| chr3_3 | mRNA | 19341277 | 19343788 | 19341277 | ID=Msa0445360-mRNA-1;Parent=Msa0445360;Name=Msa0445360-mRNA-1;_AED=0.05;_eAED=0.05;_QI=87|1|1|1|0.5|0.33|3|238|133 |
| chr3_3 | exon | 19341277 | 19341624 | 19341277 | ID=Msa0445360-mRNA-1:exon:4109;Parent=Msa0445360-mRNA-1 |
| chr3_3 | exon | 19343365 | 19343512 | 19343365 | ID=Msa0445360-mRNA-1:exon:4110;Parent=Msa0445360-mRNA-1 |
| chr3_3 | exon | 19343558 | 19343788 | 19343558 | ID=Msa0445360-mRNA-1:exon:4111;Parent=Msa0445360-mRNA-1 |
| chr3_3 | five_prime_UTR | 19341277 | 19341363 | 19341277 | ID=Msa0445360-mRNA-1:five_prime_utr;Parent=Msa0445360-mRNA-1 |
| chr3_3 | CDS | 19341364 | 19341624 | 19341364 | ID=Msa0445360-mRNA-1:cds;Parent=Msa0445360-mRNA-1 |
| chr3_3 | CDS | 19343365 | 19343505 | 19343365 | ID=Msa0445360-mRNA-1:cds;Parent=Msa0445360-mRNA-1 |
| chr3_3 | three_prime_UTR | 19343506 | 19343512 | 19343506 | ID=Msa0445360-mRNA-1:three_prime_utr;Parent=Msa0445360-mRNA-1 |
| chr3_3 | three_prime_UTR | 19343558 | 19343788 | 19343558 | ID=Msa0445360-mRNA-1:three_prime_utr;Parent=Msa0445360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
