AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0540520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0540520 MtrunA17_Chr4g0018191 89.820 167 10 1 1 160 30 196 2.91e-99 283
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0540520 AT5G51545.1 38.710 186 79 5 1 156 1 181 9.27e-32 112

Find 60 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAAATTGTCCCACTCTTC+TGG 0.189438 4_1:+22877094 None:intergenic
AAACTTCCTTGCAAGAATTT+AGG 0.190991 4_1:-22876640 Msa0540520:three_prime_UTR
CAATCCCATTTGTAATTAAC+TGG 0.242118 4_1:-22876749 Msa0540520:three_prime_UTR
AACTGGATTACGCCGAATTA+TGG 0.243755 4_1:+22880000 None:intergenic
TCACCTGTCATCTTTGATTC+TGG 0.244155 4_1:+22876865 None:intergenic
TGATGATTGCAATCCTATTC+TGG 0.254635 4_1:-22876898 Msa0540520:three_prime_UTR
CTTGGTCATATGATGCAATA+TGG 0.273057 4_1:+22876796 None:intergenic
GAAGAGAGTGCTGTTGAAAA+AGG 0.279029 4_1:-22879926 Msa0540520:CDS
ATTCTTGCGTGGCTTGGTTT+TGG 0.298906 4_1:-22879899 Msa0540520:CDS
AACAAAACCGGTGTTGGTTT+TGG 0.305798 4_1:-22880079 Msa0540520:CDS
ACGGTGTTATTGTTTCTTGC+TGG 0.311954 4_1:-22877040 Msa0540520:CDS
CTTGCTGGAGCAGTAGCATT+TGG 0.343726 4_1:-22877025 Msa0540520:CDS
GTAACTTAGAACTGTATTAC+TGG 0.345880 4_1:-22876565 Msa0540520:three_prime_UTR
GAGAAAGAGCTTCCATAATT+CGG 0.373166 4_1:-22880012 Msa0540520:CDS
TTCGGATTTGATTGTGAAGA+TGG 0.389236 4_1:+22880132 None:intergenic
GCAATATGGGGTTGCTGCTT+AGG 0.394933 4_1:+22876810 None:intergenic
GGAAATTGTCCCACTCTTCT+GGG 0.396847 4_1:+22877095 None:intergenic
GGTTCGGTTATTCTTGTTGA+GGG 0.408372 4_1:-22879878 Msa0540520:intron
GTAATCCAGTTAATTACAAA+TGG 0.412509 4_1:+22876744 None:intergenic
TTTCATAAACCTTAGTTACT+TGG 0.416674 4_1:+22876778 None:intergenic
TTGCCCTTTCTGTTTCCGTT+TGG 0.419619 4_1:+22880036 None:intergenic
TGGTAAATTGAAGCCAGAAT+AGG 0.433286 4_1:+22876885 None:intergenic
AGAGAATGAGTGTTGTAGTT+TGG 0.439386 4_1:+22880156 None:intergenic
CATACGCCATCATTAATAGT+TGG 0.447340 4_1:+22876588 None:intergenic
GAAGATTGAACAATTTATGT+TGG 0.453892 4_1:-22876835 Msa0540520:three_prime_UTR
TCTTGCAAGGAAGTTTCAAT+TGG 0.454832 4_1:+22876647 None:intergenic
GGTTTCATTCTTGCGTGGCT+TGG 0.465549 4_1:-22879905 Msa0540520:CDS
ATCATATGACCAAGTAACTA+AGG 0.465791 4_1:-22876787 Msa0540520:three_prime_UTR
CAATAACACCGTAGGGGTAA+AGG 0.466275 4_1:+22877051 None:intergenic
TCGGATTTGATTGTGAAGAT+GGG 0.478643 4_1:+22880133 None:intergenic
TTGGTCATATGATGCAATAT+GGG 0.491830 4_1:+22876797 None:intergenic
AACACCAAACGGAAACAGAA+AGG 0.495671 4_1:-22880040 Msa0540520:CDS
GATTCAGTTCCCAACAAAAC+CGG 0.500611 4_1:-22880091 Msa0540520:CDS
ACACCAAACGGAAACAGAAA+GGG 0.501372 4_1:-22880039 Msa0540520:CDS
TAATCCAGTTAATTACAAAT+GGG 0.503901 4_1:+22876745 None:intergenic
TGTTAGAAATCTCTAATGTC+CGG 0.506879 4_1:-22876939 Msa0540520:three_prime_UTR
TGGTTCGGTTATTCTTGTTG+AGG 0.511249 4_1:-22879879 Msa0540520:CDS
AATTGTTCCGAAACGAAAGC+CGG 0.516633 4_1:+22879971 None:intergenic
TTGGTGTTGTTGCCATTCGA+CGG 0.523797 4_1:+22880055 None:intergenic
CAAGAAACAATAACACCGTA+GGG 0.544936 4_1:+22877044 None:intergenic
CGAATGGCAACAACACCAAA+CGG 0.552467 4_1:-22880051 Msa0540520:CDS
ATGTAGCCAACTATTAATGA+TGG 0.560670 4_1:-22876594 Msa0540520:three_prime_UTR
TTGGAACCTAAATTCTTGCA+AGG 0.562873 4_1:+22876634 None:intergenic
CTATCCATCCTTTACCCCTA+CGG 0.563067 4_1:-22877059 Msa0540520:CDS
GAATGAGTGTTGTAGTTTGG+TGG 0.563933 4_1:+22880159 None:intergenic
GTTCCCAACAAAACCGGTGT+TGG 0.564166 4_1:-22880085 Msa0540520:CDS
CAACTATTAATGATGGCGTA+TGG 0.570130 4_1:-22876587 Msa0540520:three_prime_UTR
ACTGAATCGGACGGTTCAGA+TGG 0.575343 4_1:+22880106 None:intergenic
GTGTTGTAGTTTGGTGGTGA+AGG 0.576897 4_1:+22880165 None:intergenic
TTACCAGAATCAAAGATGAC+AGG 0.581673 4_1:-22876868 Msa0540520:three_prime_UTR
GCAAGAAACAATAACACCGT+AGG 0.600075 4_1:+22877043 None:intergenic
CGACGGACCAAAACCAACAC+CGG 0.616034 4_1:+22880072 None:intergenic
AACACCGTAGGGGTAAAGGA+TGG 0.631845 4_1:+22877055 None:intergenic
AAGTAACTAAGGTTTATGAA+AGG 0.636613 4_1:-22876776 Msa0540520:three_prime_UTR
TAAGCAGAATGAGAAACTCA+CGG 0.646278 4_1:-22876990 Msa0540520:CDS
TTGTTGGGAACTGAATCGGA+CGG 0.685336 4_1:+22880097 None:intergenic
ATGGATAGAGATACTTGACA+AGG 0.707055 4_1:+22877074 None:intergenic
TGGTCATATGATGCAATATG+GGG 0.711908 4_1:+22876798 None:intergenic
TGGAGCAGTAGCATTTGGAG+TGG 0.720186 4_1:-22877020 Msa0540520:CDS
AAGAAACAATAACACCGTAG+GGG 0.742768 4_1:+22877045 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAATTATTAATTAATT+CGG + chr4_1:22877698-22877717 None:intergenic 0.0%
!!! TTAATTATCAAATATGTTTT+TGG - chr4_1:22876971-22876990 Msa0540520:exon 10.0%
!!! TTTTTGTCTTATATAATTTT+TGG + chr4_1:22877233-22877252 None:intergenic 10.0%
!! TTAATACTATTTATTATTCA+AGG - chr4_1:22878872-22878891 Msa0540520:intron 10.0%
!!! TTTTTATTAAATTATGTACT+AGG - chr4_1:22880037-22880056 Msa0540520:CDS 10.0%
!! GAATTTATGAAAATAGTATA+TGG - chr4_1:22877512-22877531 Msa0540520:intron 15.0%
!! ATGTTCATTTAAAAAAATTG+AGG - chr4_1:22878917-22878936 Msa0540520:intron 15.0%
!! AGAAATGAAAAACAATAATT+TGG + chr4_1:22878944-22878963 None:intergenic 15.0%
!!! ATAATAGATTTTATGTGTAA+AGG + chr4_1:22880075-22880094 None:intergenic 15.0%
!!! TTATCAAATATGTTTTTGGT+TGG - chr4_1:22876975-22876994 Msa0540520:exon 20.0%
!!! TTTGCAATTTTGATATACTT+AGG - chr4_1:22877035-22877054 Msa0540520:CDS 20.0%
!! TTTGATCCGTTAAAAAAATA+AGG - chr4_1:22877062-22877081 Msa0540520:CDS 20.0%
!!! TTACTGCCTTATTTTTTTAA+CGG + chr4_1:22877071-22877090 None:intergenic 20.0%
!! TCGATAAAAAAATTGTGTTA+TGG + chr4_1:22877170-22877189 None:intergenic 20.0%
!!! TTGGTTGATAAAAACTATTT+TGG + chr4_1:22877214-22877233 None:intergenic 20.0%
!!! AAACTAAATAAAGAGCATTT+TGG + chr4_1:22877383-22877402 None:intergenic 20.0%
!! TTTGACAAAACTTATGTATA+TGG - chr4_1:22878598-22878617 Msa0540520:intron 20.0%
!! TTGACAAAACTTATGTATAT+GGG - chr4_1:22878599-22878618 Msa0540520:intron 20.0%
!!! AACCTTTATTCCTTTTTTTT+TGG - chr4_1:22879023-22879042 Msa0540520:intron 20.0%
!! ATCCAAAAAAAAAGGAATAA+AGG + chr4_1:22879028-22879047 None:intergenic 20.0%
!!! TTTTTTTTTGGATTACAAGA+GGG - chr4_1:22879035-22879054 Msa0540520:intron 20.0%
!!! TTAATGTTAGCTGATTTTAT+TGG + chr4_1:22879116-22879135 None:intergenic 20.0%
!! TAACTTATTCTTTAGACTAA+AGG + chr4_1:22879484-22879503 None:intergenic 20.0%
!! TAATCCAGTTAATTACAAAT+GGG + chr4_1:22880013-22880032 None:intergenic 20.0%
! ACTTACATTACTAACAAAAG+AGG - chr4_1:22876999-22877018 Msa0540520:CDS 25.0%
!!! AAATAAAGAGCATTTTGGTT+TGG + chr4_1:22877378-22877397 None:intergenic 25.0%
! GAAGTAACTGTAAATAAATC+AGG - chr4_1:22877404-22877423 Msa0540520:intron 25.0%
! TTAACTTACTCTATTACAAG+CGG + chr4_1:22877433-22877452 None:intergenic 25.0%
! TGTAATAGAGTAAGTTAAGT+TGG - chr4_1:22877435-22877454 Msa0540520:intron 25.0%
! ACTTCATTTATCTTGTGTTA+TGG - chr4_1:22877609-22877628 Msa0540520:intron 25.0%
! TATGGAAGTAGCTAATAATA+AGG - chr4_1:22877627-22877646 Msa0540520:intron 25.0%
! ATGGAAGTAGCTAATAATAA+GGG - chr4_1:22877628-22877647 Msa0540520:intron 25.0%
! AATAAGGGATTCTTGTAATA+CGG - chr4_1:22877643-22877662 Msa0540520:intron 25.0%
! TTAAGCTTGTAAAATCAACA+TGG - chr4_1:22877782-22877801 Msa0540520:intron 25.0%
! CATCACTTCTTAAAGAATAT+AGG - chr4_1:22878093-22878112 Msa0540520:intron 25.0%
!!! TTCAGTGATTTTTTTTCCAT+AGG + chr4_1:22878138-22878157 None:intergenic 25.0%
!! TAGTGTTGAAAGTTTGAATA+TGG - chr4_1:22878201-22878220 Msa0540520:intron 25.0%
! AATATATGAGAAAATAACCC+AGG - chr4_1:22878272-22878291 Msa0540520:intron 25.0%
! TTTGTTGAAATTAATGATCG+AGG - chr4_1:22878568-22878587 Msa0540520:intron 25.0%
! CTCTTGTAATCCAAAAAAAA+AGG + chr4_1:22879036-22879055 None:intergenic 25.0%
!!! CTTTTTTTTTGGATTACAAG+AGG - chr4_1:22879034-22879053 Msa0540520:intron 25.0%
! CTTTAGACTAAAGGTTTAAT+TGG + chr4_1:22879475-22879494 None:intergenic 25.0%
! GTAAAATGACACTAATTCTT+AGG + chr4_1:22879595-22879614 None:intergenic 25.0%
! GAAGATTGAACAATTTATGT+TGG - chr4_1:22879920-22879939 Msa0540520:CDS 25.0%
! TTTCATAAACCTTAGTTACT+TGG + chr4_1:22879980-22879999 None:intergenic 25.0%
! AAGTAACTAAGGTTTATGAA+AGG - chr4_1:22879979-22879998 Msa0540520:CDS 25.0%
! GTAATCCAGTTAATTACAAA+TGG + chr4_1:22880014-22880033 None:intergenic 25.0%
! ATTCCTGCTAAAACAAAAAT+TGG + chr4_1:22880143-22880162 None:intergenic 25.0%
!! TACTAACAAAAGAGGCATTA+AGG - chr4_1:22877007-22877026 Msa0540520:CDS 30.0%
TACGATCAAACATAGTACAA+CGG + chr4_1:22877106-22877125 None:intergenic 30.0%
AATTGTGTTATGGTTTACTG+AGG + chr4_1:22877160-22877179 None:intergenic 30.0%
!!! AACATACCTCTCTTTTTTCA+GGG + chr4_1:22877740-22877759 None:intergenic 30.0%
!!! AAACATACCTCTCTTTTTTC+AGG + chr4_1:22877741-22877760 None:intergenic 30.0%
CTGTAAGTTTAACATACCTA+TGG - chr4_1:22878119-22878138 Msa0540520:intron 30.0%
GTTCTATTGAAGTTTAGTGA+TGG - chr4_1:22878168-22878187 Msa0540520:intron 30.0%
TTTGAATATGGCTGAAGAAT+TGG - chr4_1:22878213-22878232 Msa0540520:intron 30.0%
TTGTATTTGAATGCTGTGTT+TGG - chr4_1:22878468-22878487 Msa0540520:intron 30.0%
TGTATTTGAATGCTGTGTTT+GGG - chr4_1:22878469-22878488 Msa0540520:intron 30.0%
!! GTTATGTTGTTGCTTTGAAA+AGG + chr4_1:22878504-22878523 None:intergenic 30.0%
!!! GGATTTATTTTGATTCTCTC+TGG - chr4_1:22878681-22878700 Msa0540520:intron 30.0%
AGAGACTATCAAGTACAATA+TGG - chr4_1:22878748-22878767 Msa0540520:intron 30.0%
GAGACTATCAAGTACAATAT+GGG - chr4_1:22878749-22878768 Msa0540520:intron 30.0%
TGGGAGGAAAAATAAAGTAT+CGG - chr4_1:22878768-22878787 Msa0540520:intron 30.0%
! ACATTGATACTTCCATTTTC+GGG + chr4_1:22878824-22878843 None:intergenic 30.0%
! CACATTGATACTTCCATTTT+CGG + chr4_1:22878825-22878844 None:intergenic 30.0%
TACGATTACTTCAATGAAAG+GGG + chr4_1:22879320-22879339 None:intergenic 30.0%
CTACGATTACTTCAATGAAA+GGG + chr4_1:22879321-22879340 None:intergenic 30.0%
TCTACGATTACTTCAATGAA+AGG + chr4_1:22879322-22879341 None:intergenic 30.0%
! GAATTATGTGGAGTATTTGA+AGG + chr4_1:22879412-22879431 None:intergenic 30.0%
GCTTATATTGCAGAATTATG+TGG + chr4_1:22879424-22879443 None:intergenic 30.0%
! AATTGGTTTCTTGAAAGGTT+TGG + chr4_1:22879458-22879477 None:intergenic 30.0%
! GGTTTAATTGGTTTCTTGAA+AGG + chr4_1:22879463-22879482 None:intergenic 30.0%
CTGATTAAGATACAATAGCT+TGG + chr4_1:22879545-22879564 None:intergenic 30.0%
! CTTAATCAGTTAGTTGACTT+AGG - chr4_1:22879556-22879575 Msa0540520:intron 30.0%
! GACACTAATTCTTAGGTTTT+AGG + chr4_1:22879588-22879607 None:intergenic 30.0%
! CGATACTGTGGTTAATATTT+TGG - chr4_1:22879617-22879636 Msa0540520:intron 30.0%
!!! ATATTTTGGTGTGTTATTGC+AGG - chr4_1:22879631-22879650 Msa0540520:intron 30.0%
TGTTAGAAATCTCTAATGTC+CGG - chr4_1:22879816-22879835 Msa0540520:intron 30.0%
TTGGTCATATGATGCAATAT+GGG + chr4_1:22879961-22879980 None:intergenic 30.0%
ATCATATGACCAAGTAACTA+AGG - chr4_1:22879968-22879987 Msa0540520:CDS 30.0%
CAATCCCATTTGTAATTAAC+TGG - chr4_1:22880006-22880025 Msa0540520:CDS 30.0%
AAACTTCCTTGCAAGAATTT+AGG - chr4_1:22880115-22880134 Msa0540520:CDS 30.0%
!!! GTTCCAATTTTTGTTTTAGC+AGG - chr4_1:22880137-22880156 Msa0540520:CDS 30.0%
ATGTAGCCAACTATTAATGA+TGG - chr4_1:22880161-22880180 Msa0540520:CDS 30.0%
GTAACTTAGAACTGTATTAC+TGG - chr4_1:22880190-22880209 Msa0540520:CDS 30.0%
! AGAGAATGAGTGTTGTAGTT+TGG + chr4_1:22876602-22876621 None:intergenic 35.0%
TCGGATTTGATTGTGAAGAT+GGG + chr4_1:22876625-22876644 None:intergenic 35.0%
TTCGGATTTGATTGTGAAGA+TGG + chr4_1:22876626-22876645 None:intergenic 35.0%
GAGAAAGAGCTTCCATAATT+CGG - chr4_1:22876743-22876762 Msa0540520:three_prime_UTR 35.0%
AAAAAGGTTTCATTCTTGCG+TGG - chr4_1:22876845-22876864 Msa0540520:three_prime_UTR 35.0%
TACTATGTTTGATCGTACCA+AGG - chr4_1:22877109-22877128 Msa0540520:intron 35.0%
ACTTGTCACTATAGTCCTTA+AGG + chr4_1:22877331-22877350 None:intergenic 35.0%
AATCTCACACGTGTTTACAA+CGG + chr4_1:22877484-22877503 None:intergenic 35.0%
TAAACACGTGTGAGATTGTT+TGG - chr4_1:22877487-22877506 Msa0540520:intron 35.0%
AAACACGTGTGAGATTGTTT+GGG - chr4_1:22877488-22877507 Msa0540520:intron 35.0%
ATATGTCCCTGAAAAAAGAG+AGG - chr4_1:22877731-22877750 Msa0540520:intron 35.0%
AAAATCAACATGGTGTGACA+TGG - chr4_1:22877792-22877811 Msa0540520:intron 35.0%
ATCTCTTATGCATGTGGTTT+GGG - chr4_1:22877835-22877854 Msa0540520:intron 35.0%
TGATTAGCAGACAGTGTATA+TGG - chr4_1:22877861-22877880 Msa0540520:intron 35.0%
! GAATAGCTCAGTCTCTTTTA+TGG - chr4_1:22877898-22877917 Msa0540520:intron 35.0%
GTATCGTATTTGTGCATCAT+AGG + chr4_1:22878026-22878045 None:intergenic 35.0%
CACAAATACGATACGAGTAT+TGG - chr4_1:22878032-22878051 Msa0540520:intron 35.0%
ATATGATGCACGTATTTGAC+AGG - chr4_1:22878064-22878083 Msa0540520:intron 35.0%
! GTCCCTTCTTTTACCAATTT+GGG + chr4_1:22878349-22878368 None:intergenic 35.0%
!! ATGTTGTTGCTTTGAAAAGG+AGG + chr4_1:22878501-22878520 None:intergenic 35.0%
TCAAAGCAACAACATAACCA+AGG - chr4_1:22878506-22878525 Msa0540520:intron 35.0%
CAACAACATAACCAAGGATT+AGG - chr4_1:22878512-22878531 Msa0540520:intron 35.0%
ACTATCAAGTACAATATGGG+AGG - chr4_1:22878752-22878771 Msa0540520:intron 35.0%
AGAAAAAATACGCCCGAAAA+TGG - chr4_1:22878809-22878828 Msa0540520:intron 35.0%
! GGAGTCTTTTGCAAAACATT+AGG + chr4_1:22879282-22879301 None:intergenic 35.0%
ACGATTACTTCAATGAAAGG+GGG + chr4_1:22879319-22879338 None:intergenic 35.0%
TTCTCGTGGGATTCAAAAAT+TGG + chr4_1:22879374-22879393 None:intergenic 35.0%
! TGAAAATTGCTAGTTCTCGT+GGG + chr4_1:22879387-22879406 None:intergenic 35.0%
! TTGAAAATTGCTAGTTCTCG+TGG + chr4_1:22879388-22879407 None:intergenic 35.0%
!! TTCTTGAAAGGTTTGGTTTG+TGG + chr4_1:22879451-22879470 None:intergenic 35.0%
!! GTCATTTTACATCGATACTG+TGG - chr4_1:22879605-22879624 Msa0540520:intron 35.0%
ATGGATAGAGATACTTGACA+AGG + chr4_1:22879684-22879703 None:intergenic 35.0%
AAGAAACAATAACACCGTAG+GGG + chr4_1:22879713-22879732 None:intergenic 35.0%
CAAGAAACAATAACACCGTA+GGG + chr4_1:22879714-22879733 None:intergenic 35.0%
TAAGCAGAATGAGAAACTCA+CGG - chr4_1:22879765-22879784 Msa0540520:intron 35.0%
!!! ATCGCTCATAGTACTTTTTC+CGG + chr4_1:22879838-22879857 None:intergenic 35.0%
TGATGATTGCAATCCTATTC+TGG - chr4_1:22879857-22879876 Msa0540520:intron 35.0%
TGGTAAATTGAAGCCAGAAT+AGG + chr4_1:22879873-22879892 None:intergenic 35.0%
TTACCAGAATCAAAGATGAC+AGG - chr4_1:22879887-22879906 Msa0540520:CDS 35.0%
TGGTCATATGATGCAATATG+GGG + chr4_1:22879960-22879979 None:intergenic 35.0%
CTTGGTCATATGATGCAATA+TGG + chr4_1:22879962-22879981 None:intergenic 35.0%
TCTTGCAAGGAAGTTTCAAT+TGG + chr4_1:22880111-22880130 None:intergenic 35.0%
TTGGAACCTAAATTCTTGCA+AGG + chr4_1:22880124-22880143 None:intergenic 35.0%
CATACGCCATCATTAATAGT+TGG + chr4_1:22880170-22880189 None:intergenic 35.0%
! CAACTATTAATGATGGCGTA+TGG - chr4_1:22880168-22880187 Msa0540520:CDS 35.0%
! GAATGAGTGTTGTAGTTTGG+TGG + chr4_1:22876599-22876618 None:intergenic 40.0%
!!! GGTTTTGTTGGGAACTGAAT+CGG + chr4_1:22876665-22876684 None:intergenic 40.0%
GATTCAGTTCCCAACAAAAC+CGG - chr4_1:22876664-22876683 Msa0540520:three_prime_UTR 40.0%
!!! AAACCAACACCGGTTTTGTT+GGG + chr4_1:22876676-22876695 None:intergenic 40.0%
!!! AAAACCAACACCGGTTTTGT+TGG + chr4_1:22876677-22876696 None:intergenic 40.0%
!!! AACAAAACCGGTGTTGGTTT+TGG - chr4_1:22876676-22876695 Msa0540520:three_prime_UTR 40.0%
AACACCAAACGGAAACAGAA+AGG - chr4_1:22876715-22876734 Msa0540520:three_prime_UTR 40.0%
ACACCAAACGGAAACAGAAA+GGG - chr4_1:22876716-22876735 Msa0540520:three_prime_UTR 40.0%
AACTGGATTACGCCGAATTA+TGG + chr4_1:22876758-22876777 None:intergenic 40.0%
GCGTAATCCAGTTGAAAAAC+CGG - chr4_1:22876765-22876784 Msa0540520:three_prime_UTR 40.0%
! TGAAAAACCGGCTTTCGTTT+CGG - chr4_1:22876777-22876796 Msa0540520:three_prime_UTR 40.0%
AATTGTTCCGAAACGAAAGC+CGG + chr4_1:22876787-22876806 None:intergenic 40.0%
!! GAAGAGAGTGCTGTTGAAAA+AGG - chr4_1:22876829-22876848 Msa0540520:three_prime_UTR 40.0%
!! TGGTTCGGTTATTCTTGTTG+AGG - chr4_1:22876876-22876895 Msa0540520:three_prime_UTR 40.0%
! GGTTCGGTTATTCTTGTTGA+GGG - chr4_1:22876877-22876896 Msa0540520:three_prime_UTR 40.0%
TAAGTTGTTGTCTTGTGCCT+TGG + chr4_1:22877129-22877148 None:intergenic 40.0%
!!! GAGCATTTTGGTTTGGTCAT+GGG + chr4_1:22877371-22877390 None:intergenic 40.0%
!!! AGAGCATTTTGGTTTGGTCA+TGG + chr4_1:22877372-22877391 None:intergenic 40.0%
AACCAGATCTCTTATGCATG+TGG - chr4_1:22877829-22877848 Msa0540520:intron 40.0%
AACCACATGCATAAGAGATC+TGG + chr4_1:22877834-22877853 None:intergenic 40.0%
GATCTCTTATGCATGTGGTT+TGG - chr4_1:22877834-22877853 Msa0540520:intron 40.0%
GACTCGTTTATCTTGAGGTA+TGG + chr4_1:22877928-22877947 None:intergenic 40.0%
ACTGTGGTTAGAGGATAACT+TGG - chr4_1:22877955-22877974 Msa0540520:intron 40.0%
CTGTGGTTAGAGGATAACTT+GGG - chr4_1:22877956-22877975 Msa0540520:intron 40.0%
ATGAGAAAATAACCCAGGTC+CGG - chr4_1:22878277-22878296 Msa0540520:intron 40.0%
TTTACCAATTTGGGCCAACA+GGG + chr4_1:22878340-22878359 None:intergenic 40.0%
! TTTTACCAATTTGGGCCAAC+AGG + chr4_1:22878341-22878360 None:intergenic 40.0%
TGGCCCAAATTGGTAAAAGA+AGG - chr4_1:22878343-22878362 Msa0540520:intron 40.0%
GGCCCAAATTGGTAAAAGAA+GGG - chr4_1:22878344-22878363 Msa0540520:intron 40.0%
! GGTCCCTTCTTTTACCAATT+TGG + chr4_1:22878350-22878369 None:intergenic 40.0%
AATTGGTAAAAGAAGGGACC+CGG - chr4_1:22878350-22878369 Msa0540520:intron 40.0%
ACCAAGGATTAGGATCTGAA+TGG - chr4_1:22878522-22878541 Msa0540520:intron 40.0%
CCAAGGATTAGGATCTGAAT+GGG - chr4_1:22878523-22878542 Msa0540520:intron 40.0%
AGGATCTGAATGGGAAAAGT+AGG - chr4_1:22878532-22878551 Msa0540520:intron 40.0%
GGATCTGAATGGGAAAAGTA+GGG - chr4_1:22878533-22878552 Msa0540520:intron 40.0%
ACACGTCTAACTCTTCTTCA+TGG + chr4_1:22878637-22878656 None:intergenic 40.0%
! TGTCTTTTTCCTTTGGGCTT+CGG + chr4_1:22879061-22879080 None:intergenic 40.0%
! GGTGGTTGTCTTTTTCCTTT+GGG + chr4_1:22879067-22879086 None:intergenic 40.0%
! TGGTGGTTGTCTTTTTCCTT+TGG + chr4_1:22879068-22879087 None:intergenic 40.0%
TTATTGGTATTTCCACACCG+CGG + chr4_1:22879100-22879119 None:intergenic 40.0%
! TGGCAAATATGGCTTGTGAA+GGG + chr4_1:22879186-22879205 None:intergenic 40.0%
! TTGGCAAATATGGCTTGTGA+AGG + chr4_1:22879187-22879206 None:intergenic 40.0%
!! AGAAGCATTTGCTTCTCTGT+AGG - chr4_1:22879216-22879235 Msa0540520:intron 40.0%
TCAAAAATTGGAGCTTCACG+TGG + chr4_1:22879362-22879381 None:intergenic 40.0%
ACTTTGACCCATACCTAAGA+TGG - chr4_1:22879516-22879535 Msa0540520:intron 40.0%
TTGGAGACCATCTTAGGTAT+GGG + chr4_1:22879526-22879545 None:intergenic 40.0%
AATAGCTTGGAGACCATCTT+AGG + chr4_1:22879532-22879551 None:intergenic 40.0%
GCAAGAAACAATAACACCGT+AGG + chr4_1:22879715-22879734 None:intergenic 40.0%
!! ACGGTGTTATTGTTTCTTGC+TGG - chr4_1:22879715-22879734 Msa0540520:intron 40.0%
TCACCTGTCATCTTTGATTC+TGG + chr4_1:22879893-22879912 None:intergenic 40.0%
!! GTGTTGTAGTTTGGTGGTGA+AGG + chr4_1:22876593-22876612 None:intergenic 45.0%
! GGACGGTTCAGATGGTTTTT+CGG + chr4_1:22876644-22876663 None:intergenic 45.0%
TTGTTGGGAACTGAATCGGA+CGG + chr4_1:22876661-22876680 None:intergenic 45.0%
!! TTGGTGTTGTTGCCATTCGA+CGG + chr4_1:22876703-22876722 None:intergenic 45.0%
CGAATGGCAACAACACCAAA+CGG - chr4_1:22876704-22876723 Msa0540520:three_prime_UTR 45.0%
TTGCCCTTTCTGTTTCCGTT+TGG + chr4_1:22876722-22876741 None:intergenic 45.0%
!! ACGAAAGCCGGTTTTTCAAC+TGG + chr4_1:22876775-22876794 None:intergenic 45.0%
!!! ATTCTTGCGTGGCTTGGTTT+TGG - chr4_1:22876856-22876875 Msa0540520:three_prime_UTR 45.0%
GTACTGGACATGACAACACA+AGG + chr4_1:22877295-22877314 None:intergenic 45.0%
ACTTACCTTGTGCTGCCTTA+AGG - chr4_1:22877313-22877332 Msa0540520:intron 45.0%
ATAGTCCTTAAGGCAGCACA+AGG + chr4_1:22877321-22877340 None:intergenic 45.0%
TTTGGTCATGGGATGTGTGA+GGG + chr4_1:22877360-22877379 None:intergenic 45.0%
CCAGAGACTCGTTTATCTTG+AGG + chr4_1:22877933-22877952 None:intergenic 45.0%
CCTCAAGATAAACGAGTCTC+TGG - chr4_1:22877930-22877949 Msa0540520:intron 45.0%
AAACGAGTCTCTGGTTACTG+TGG - chr4_1:22877939-22877958 Msa0540520:intron 45.0%
TCTCTGGTTACTGTGGTTAG+AGG - chr4_1:22877946-22877965 Msa0540520:intron 45.0%
TATCAGATTACACCAGCGTC+CGG + chr4_1:22878372-22878391 None:intergenic 45.0%
CCCATTCAGATCCTAATCCT+TGG + chr4_1:22878526-22878545 None:intergenic 45.0%
AATCCTTACACACTCTCGAC+AGG + chr4_1:22878666-22878685 None:intergenic 45.0%
! CAAATATGGCTTGTGAAGGG+GGG + chr4_1:22879183-22879202 None:intergenic 45.0%
! GCAAATATGGCTTGTGAAGG+GGG + chr4_1:22879184-22879203 None:intergenic 45.0%
! GGCAAATATGGCTTGTGAAG+GGG + chr4_1:22879185-22879204 None:intergenic 45.0%
! TGCAGACGCATTGGCAAATA+TGG + chr4_1:22879197-22879216 None:intergenic 45.0%
AAATGCTTCTGCAGACGCAT+TGG + chr4_1:22879206-22879225 None:intergenic 45.0%
GACGCTGCAAGGTTTGAATT+GGG + chr4_1:22879260-22879279 None:intergenic 45.0%
CAAAACATTAGGACGCTGCA+AGG + chr4_1:22879271-22879290 None:intergenic 45.0%
CTTGGAGACCATCTTAGGTA+TGG + chr4_1:22879527-22879546 None:intergenic 45.0%
!! AGGCTTTTTCCCAGAAGAGT+GGG - chr4_1:22879651-22879670 Msa0540520:intron 45.0%
GGAAATTGTCCCACTCTTCT+GGG + chr4_1:22879663-22879682 None:intergenic 45.0%
AGGAAATTGTCCCACTCTTC+TGG + chr4_1:22879664-22879683 None:intergenic 45.0%
CTATCCATCCTTTACCCCTA+CGG - chr4_1:22879696-22879715 Msa0540520:intron 45.0%
CAATAACACCGTAGGGGTAA+AGG + chr4_1:22879707-22879726 None:intergenic 45.0%
!! TTAAAAATAAAATAAAAAGA+AGG + chr4_1:22876931-22876950 None:intergenic 5.0%
!! TTAAAATTATTAATTAATTC+GGG + chr4_1:22877697-22877716 None:intergenic 5.0%
ACTGAATCGGACGGTTCAGA+TGG + chr4_1:22876652-22876671 None:intergenic 50.0%
GTTCCCAACAAAACCGGTGT+TGG - chr4_1:22876670-22876689 Msa0540520:three_prime_UTR 50.0%
!!! GTTGGTTTTGGTCCGTCGAA+TGG - chr4_1:22876688-22876707 Msa0540520:three_prime_UTR 50.0%
GGTTTCATTCTTGCGTGGCT+TGG - chr4_1:22876850-22876869 Msa0540520:three_prime_UTR 50.0%
!!! TGCGTGGCTTGGTTTTGGTT+CGG - chr4_1:22876861-22876880 Msa0540520:three_prime_UTR 50.0%
! GGTATTGCTCTTGCTGCTTC+AGG - chr4_1:22876898-22876917 Msa0540520:three_prime_UTR 50.0%
AGGCAGCACAAGGTAAGTAC+TGG + chr4_1:22877311-22877330 None:intergenic 50.0%
TTGGTCATGGGATGTGTGAG+GGG + chr4_1:22877359-22877378 None:intergenic 50.0%
GTTTGGTCATGGGATGTGTG+AGG + chr4_1:22877361-22877380 None:intergenic 50.0%
ATCAGATTACACCAGCGTCC+GGG + chr4_1:22878371-22878390 None:intergenic 50.0%
AACCACCACTTAACTAGCCG+CGG - chr4_1:22879080-22879099 Msa0540520:intron 50.0%
! TTGCTTCTCTGTAGGAGTGC+TGG - chr4_1:22879224-22879243 Msa0540520:intron 50.0%
!! CTCTGTAGGAGTGCTGGATT+CGG - chr4_1:22879230-22879249 Msa0540520:intron 50.0%
GCTGCAAGGTTTGAATTGGG+AGG + chr4_1:22879257-22879276 None:intergenic 50.0%
GGACGCTGCAAGGTTTGAAT+TGG + chr4_1:22879261-22879280 None:intergenic 50.0%
AATGAAAGGGGGATCAGCTG+CGG + chr4_1:22879308-22879327 None:intergenic 50.0%
!! CAGGCTTTTTCCCAGAAGAG+TGG - chr4_1:22879650-22879669 Msa0540520:intron 50.0%
AACACCGTAGGGGTAAAGGA+TGG + chr4_1:22879703-22879722 None:intergenic 50.0%
CTTGCTGGAGCAGTAGCATT+TGG - chr4_1:22879730-22879749 Msa0540520:intron 50.0%
TGGAGCAGTAGCATTTGGAG+TGG - chr4_1:22879735-22879754 Msa0540520:intron 50.0%
! GCAATATGGGGTTGCTGCTT+AGG + chr4_1:22879948-22879967 None:intergenic 50.0%
CGACGGACCAAAACCAACAC+CGG + chr4_1:22876686-22876705 None:intergenic 55.0%
! TGCTCTTGCTGCTTCAGGTC+AGG - chr4_1:22876903-22876922 Msa0540520:three_prime_UTR 55.0%
GACGTTGGGTTTGGCTGAGT+CGG + chr4_1:22878303-22878322 None:intergenic 55.0%
CAGCCAAACCCAACGTCCAA+AGG - chr4_1:22878306-22878325 Msa0540520:intron 55.0%
ACTGTGGGCCTTTGGACGTT+GGG + chr4_1:22878317-22878336 None:intergenic 55.0%
TTTGGGCCAACAGGGACTGT+GGG + chr4_1:22878332-22878351 None:intergenic 55.0%
ATTTGGGCCAACAGGGACTG+TGG + chr4_1:22878333-22878352 None:intergenic 55.0%
CAGTCCCTGTTGGCCCAAAT+TGG - chr4_1:22878333-22878352 Msa0540520:intron 55.0%
! GAGCCTGTCGAGAGTGTGTA+AGG - chr4_1:22878660-22878679 Msa0540520:intron 55.0%
GGAGCTTCACGTGGACTCTT+CGG + chr4_1:22879353-22879372 None:intergenic 55.0%
TTGGGTTTGGCTGAGTCGGC+CGG + chr4_1:22878299-22878318 None:intergenic 60.0%
GGGCCTTTGGACGTTGGGTT+TGG + chr4_1:22878312-22878331 None:intergenic 60.0%
GACTGTGGGCCTTTGGACGT+TGG + chr4_1:22878318-22878337 None:intergenic 60.0%
CAACAGGGACTGTGGGCCTT+TGG + chr4_1:22878325-22878344 None:intergenic 60.0%
CAAAGGCCCACAGTCCCTGT+TGG - chr4_1:22878323-22878342 Msa0540520:intron 60.0%
AAAAGAAGGGACCCGGACGC+TGG - chr4_1:22878357-22878376 Msa0540520:intron 60.0%
ACAAGAGGGCCGAAGCCCAA+AGG - chr4_1:22879049-22879068 Msa0540520:intron 60.0%
! CACCGCGGCTAGTTAAGTGG+TGG + chr4_1:22879085-22879104 None:intergenic 60.0%
! CCACACCGCGGCTAGTTAAG+TGG + chr4_1:22879088-22879107 None:intergenic 60.0%
CCACTTAACTAGCCGCGGTG+TGG - chr4_1:22879085-22879104 Msa0540520:intron 60.0%
AAGGGGGATCAGCTGCGGTT+TGG + chr4_1:22879303-22879322 None:intergenic 60.0%
TGGCTGAGTCGGCCGGACCT+GGG + chr4_1:22878292-22878311 None:intergenic 70.0%
TTGGCTGAGTCGGCCGGACC+TGG + chr4_1:22878293-22878312 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 22876562 22880215 22876562 ID=Msa0540520;Name=Msa0540520
chr4_1 mRNA 22876562 22880215 22876562 ID=Msa0540520-mRNA-1;Parent=Msa0540520;Name=Msa0540520-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0.5|1|1|1|2|417|160
chr4_1 exon 22876562 22877124 22876562 ID=Msa0540520-mRNA-1:exon:6350;Parent=Msa0540520-mRNA-1
chr4_1 exon 22879879 22880215 22879879 ID=Msa0540520-mRNA-1:exon:6349;Parent=Msa0540520-mRNA-1
chr4_1 CDS 22879879 22880215 22879879 ID=Msa0540520-mRNA-1:cds;Parent=Msa0540520-mRNA-1
chr4_1 CDS 22876979 22877124 22876979 ID=Msa0540520-mRNA-1:cds;Parent=Msa0540520-mRNA-1
chr4_1 three_prime_UTR 22876562 22876978 22876562 ID=Msa0540520-mRNA-1:three_prime_utr;Parent=Msa0540520-mRNA-1
Gene Sequence

>Msa0540520

ATGGCGCTACAAACACAATTCGTAACTTCCTTCACCACCAAACTACAACACTCATTCTCTCCCATCTTCACAATCAAATCCGAAAAACCATCTGAACCGTCCGATTCAGTTCCCAACAAAACCGGTGTTGGTTTTGGTCCGTCGAATGGCAACAACACCAAACGGAAACAGAAAGGGCAAAGAGAAAGAGCTTCCATAATTCGGCGTAATCCAGTTGAAAAACCGGCTTTCGTTTCGGAACAATTAAAACAACAACAAGAAGTTCAAGAAGAGAGTGCTGTTGAAAAAGGTTTCATTCTTGCGTGGCTTGGTTTTGGTTCGGTTATTCTTGTTGAGGGCTTTTTCCCAGAAGAGTGGGACAATTTCCTTGTCAAGTATCTCTATCCATCCTTTACCCCTACGGTGTTATTGTTTCTTGCTGGAGCAGTAGCATTTGGAGTGGTGAAATATAAGCAGAATGAGAAACTCACGGAGCGAAAATAG

Protein sequence

>Msa0540520

MALQTQFVTSFTTKLQHSFSPIFTIKSEKPSEPSDSVPNKTGVGFGPSNGNNTKRKQKGQRERASIIRRNPVEKPAFVSEQLKQQQEVQEESAVEKGFILAWLGFGSVILVEGFFPEEWDNFLVKYLYPSFTPTVLLFLAGAVAFGVVKYKQNEKLTERK*