AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1423190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1423190 MtrunA17_Chr1g0203761 91.912 272 10 2 1 269 1 263 1.28e-178 493
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1423190 AT5G52100.1 68.132 273 69 4 1 269 1 259 3.23e-126 361

Find 92 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGATACCATCGTATAATT+TGG 0.146788 tig0025513:+64792 None:intergenic
AAATGACCTTACTATGGTTT+TGG 0.191058 tig0025513:-67026 Msa1423190:CDS
GTGGAACAGGTTGTAATAAA+TGG 0.207909 tig0025513:-67328 Msa1423190:intron
TAGAGAGATTGTTGGCAATT+TGG 0.249550 tig0025513:+65844 None:intergenic
TATATAGGCTTATCTTGTTT+TGG 0.286059 tig0025513:-67596 Msa1423190:five_prime_UTR
AGCAATCAATTTAGCTAGTT+AGG 0.316369 tig0025513:-64887 Msa1423190:three_prime_UTR
TTGAGAATTCAAGTAGTTGA+TGG 0.320100 tig0025513:+67525 None:intergenic
CAATTTCGACATTGCGGTAA+TGG 0.331384 tig0025513:+66134 None:intergenic
ACAATATAGGCAACAGCATT+TGG 0.347090 tig0025513:-66495 Msa1423190:intron
TATACTAAATGACCTTACTA+TGG 0.353599 tig0025513:-67032 Msa1423190:CDS
CAACATGTTGGGGAAGATAT+TGG 0.357960 tig0025513:-67223 Msa1423190:CDS
CAAATATCATAGACAAGGTT+TGG 0.361438 tig0025513:-65048 Msa1423190:three_prime_UTR
AAAGGCAAGGGGTCAAGCTT+TGG 0.362723 tig0025513:-65675 Msa1423190:intron
TCAGTAGTGTGCAAGTCTTT+TGG 0.369091 tig0025513:-64774 Msa1423190:three_prime_UTR
GTTGCTCCAACGCTTTCAAT+AGG 0.371224 tig0025513:-66196 Msa1423190:CDS
GACTACGACCGCTGTGGCCT+TGG 0.379286 tig0025513:+66884 None:intergenic
CAGAAGCAGAAGCAATATAA+AGG 0.393758 tig0025513:-67428 Msa1423190:intron
AAGGCAAGGGGTCAAGCTTT+GGG 0.402926 tig0025513:-65674 Msa1423190:CDS
CTGATACCATCGTATAATTT+GGG 0.403021 tig0025513:+64793 None:intergenic
GTTGGCAATTTGGTTTGCTT+CGG 0.404040 tig0025513:+65854 None:intergenic
TGGAATTCGCGTGCACAGTT+TGG 0.408268 tig0025513:-65648 Msa1423190:CDS
CTATTGATACTCAACATGTT+GGG 0.408524 tig0025513:-67234 Msa1423190:CDS
AGTAGTTGATGGAATGAAAC+TGG 0.415845 tig0025513:+67536 None:intergenic
ATCTGTGATATCATGCTTGA+TGG 0.417837 tig0025513:+65313 None:intergenic
GCCAGAGGAATGGAAGTTGC+TGG 0.433583 tig0025513:-67259 Msa1423190:CDS
TCACCCCTTGCTCACCATGC+TGG 0.433731 tig0025513:+66398 None:intergenic
GTTAAATTCAAGCGACTCAC+TGG 0.447324 tig0025513:-65084 Msa1423190:three_prime_UTR
TCCAGCAACTTCCATTCCTC+TGG 0.450267 tig0025513:+67258 None:intergenic
TCTTACATTTGCATTAGCCT+TGG 0.452314 tig0025513:+66105 None:intergenic
CAACTACTTGAATTCTCAAA+TGG 0.460268 tig0025513:-67521 Msa1423190:CDS
AGGGGTCAAGCTTTGGGAGA+TGG 0.464250 tig0025513:-65668 Msa1423190:CDS
ACCGTATCTAATTTGATTCG+TGG 0.478498 tig0025513:+66450 None:intergenic
GAAGAACTTGGTATACGGCT+TGG 0.478531 tig0025513:-65142 Msa1423190:intron
ATTTGGTTTGCTTCGGCCGA+TGG 0.481953 tig0025513:+65861 None:intergenic
GGAATGAAACTGGCAGCTTA+AGG 0.481987 tig0025513:+67546 None:intergenic
ACCGAGGTTAGAGAGATTGT+TGG 0.485133 tig0025513:+65836 None:intergenic
CTAATGGCTAATAGCAAGCC+TGG 0.489682 tig0025513:+65275 None:intergenic
TTTCCTGTAGCTTTGTGGCA+TGG 0.496064 tig0025513:-67074 Msa1423190:intron
GTCTTGGAGAGGCATGTCCT+TGG 0.496082 tig0025513:-65583 Msa1423190:CDS
GCTATTGATACTCAACATGT+TGG 0.498878 tig0025513:-67235 Msa1423190:CDS
ATTGATCCTATTGAAAGCGT+TGG 0.506989 tig0025513:+66190 None:intergenic
AGACTCCTCAACAGATGTCT+TGG 0.508028 tig0025513:-65796 Msa1423190:intron
TAGAACCCAAAACCATAGTA+AGG 0.510640 tig0025513:+67020 None:intergenic
ACTATAATGACAGGGTGTCT+TGG 0.515706 tig0025513:-66218 Msa1423190:intron
ATAGTAAGGTCATTTAGTAT+AGG 0.525371 tig0025513:+67034 None:intergenic
CAAGGAGACTTGAGCAGCAA+TGG 0.525714 tig0025513:-67572 Msa1423190:exon
AGGATCAATATTGTTGCAGC+AGG 0.526093 tig0025513:-66176 Msa1423190:CDS
ATCATATGCTAATGCTACCT+TGG 0.539430 tig0025513:-65106 Msa1423190:three_prime_UTR
GTCATACACTGCGGAAGGGT+CGG 0.540214 tig0025513:+66854 None:intergenic
CTAATGTGTAGAGAGAAAAT+CGG 0.542006 tig0025513:+65000 None:intergenic
TGTAATAAATGGAGCAGCAA+AGG 0.543811 tig0025513:-67317 Msa1423190:CDS
GCCAACAATCTCTCTAACCT+CGG 0.544225 tig0025513:-65837 Msa1423190:CDS
TATGATATTTGTCAATATGC+TGG 0.545728 tig0025513:+65060 None:intergenic
AGCAGTATTAGCTGTGACAA+AGG 0.549949 tig0025513:-67281 Msa1423190:CDS
TGTTGGGGAAGATATTGGAC+AGG 0.558324 tig0025513:-67218 Msa1423190:intron
TTACCGCAATGTCGAAATTG+TGG 0.563978 tig0025513:-66131 Msa1423190:CDS
TGTTATACAGGATCTTCCAT+CGG 0.565260 tig0025513:-65877 Msa1423190:intron
TCATTCATCTCATACACAAA+GGG 0.565937 tig0025513:-64915 Msa1423190:three_prime_UTR
TGTCGAAATTGTGGAATCCA+AGG 0.571619 tig0025513:-66122 Msa1423190:CDS
GATGTACAATGTCTTATGCC+AGG 0.572407 tig0025513:-65293 Msa1423190:three_prime_UTR
AAGTGAACTGTTGTACTAGA+GGG 0.580769 tig0025513:+65611 None:intergenic
ACATTGTCATACACTGCGGA+AGG 0.587528 tig0025513:+66849 None:intergenic
AAAGTGAACTGTTGTACTAG+AGG 0.590884 tig0025513:+65610 None:intergenic
TGTGACAAAGGCCAGAGGAA+TGG 0.593244 tig0025513:-67269 Msa1423190:CDS
GTCATTCATCTCATACACAA+AGG 0.594699 tig0025513:-64916 Msa1423190:three_prime_UTR
GTTGTACTAGAGGGAAGCCC+TGG 0.594961 tig0025513:+65620 None:intergenic
GCTTCTGCTTCTCAACACAA+AGG 0.596731 tig0025513:+67468 None:intergenic
AATGGAGCAGCAAAGGAGGT+AGG 0.602441 tig0025513:-67310 Msa1423190:CDS
TATTGATACTCAACATGTTG+GGG 0.603145 tig0025513:-67233 Msa1423190:CDS
TTTAGTATAGGTATTTCAAG+AGG 0.603621 tig0025513:+67046 None:intergenic
TACCATCGTATAATTTGGGT+AGG 0.604041 tig0025513:+64797 None:intergenic
ATTATCTGCATTCTGTGAGA+AGG 0.610160 tig0025513:-66421 Msa1423190:CDS
AATAAATGGAGCAGCAAAGG+AGG 0.611168 tig0025513:-67314 Msa1423190:CDS
TAGAAAAGTAGTGCGCCTCA+AGG 0.613059 tig0025513:-65255 Msa1423190:intron
GCCACGAATCAAATTAGATA+CGG 0.614332 tig0025513:-66451 Msa1423190:CDS
ACCATCGTATAATTTGGGTA+GGG 0.617195 tig0025513:+64798 None:intergenic
CCTTACCAAGACATCTGTTG+AGG 0.630824 tig0025513:+65791 None:intergenic
AGCATTCTGAACGTGACTCG+AGG 0.636599 tig0025513:-64979 Msa1423190:three_prime_UTR
ATTCCACAATTTCGACATTG+CGG 0.643338 tig0025513:+66128 None:intergenic
CTCTGTTATAGATTTGACCG+AGG 0.649127 tig0025513:+65820 None:intergenic
CATTGTCATACACTGCGGAA+GGG 0.659779 tig0025513:+66850 None:intergenic
GAGTCGCTTGAATTTAACCA+AGG 0.665475 tig0025513:+65089 None:intergenic
ACCCTACCCAAATTATACGA+TGG 0.678918 tig0025513:-64799 Msa1423190:three_prime_UTR
ATGTGTAGAGAGAAAATCGG+AGG 0.684815 tig0025513:+65003 None:intergenic
AGAATAAAATGTGTTCACCA+AGG 0.686841 tig0025513:+65566 None:intergenic
ATTCTGTGAGAAGGCCAGCA+TGG 0.689417 tig0025513:-66412 Msa1423190:intron
ATTGACAAATATCATAGACA+AGG 0.690189 tig0025513:-65053 Msa1423190:three_prime_UTR
TATCACACGACAAAGGCAAG+GGG 0.699381 tig0025513:-65686 Msa1423190:intron
GAAATCGACTACGACCGCTG+TGG 0.707192 tig0025513:+66878 None:intergenic
TTAGCTGTGACAAAGGCCAG+AGG 0.735270 tig0025513:-67274 Msa1423190:CDS
TTTGTAGTCCAAGGCCACAG+CGG 0.738213 tig0025513:-66892 Msa1423190:intron
TCATACATTGTCATACACTG+CGG 0.774824 tig0025513:+66845 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAATTTAGTCAATTTA+AGG - tig0025513:66957-66976 Msa1423190:intron 10.0%
!! TAAATTATATTTGTAGCATT+AGG - tig0025513:65785-65804 Msa1423190:intron 15.0%
!! ATATAAGCACTTAATTAACA+TGG - tig0025513:65234-65253 Msa1423190:intron 20.0%
!! CTACAGGAAAATAAAAAATT+AGG + tig0025513:65260-65279 None:intergenic 20.0%
!!! TTCATCTTAAATGCATATTT+TGG + tig0025513:65577-65596 None:intergenic 20.0%
!! AAGATGAAGTGTAAATTAAA+TGG - tig0025513:65589-65608 Msa1423190:CDS 20.0%
!! AAGACTGATAGTTTATTTAT+TGG - tig0025513:65621-65640 Msa1423190:CDS 20.0%
!! AGACTGATAGTTTATTTATT+GGG - tig0025513:65622-65641 Msa1423190:CDS 20.0%
!!! TAAATAGATTTTACCATAAG+TGG + tig0025513:66303-66322 None:intergenic 20.0%
!! TTATGGTAAAATCTATTTAG+AGG - tig0025513:66304-66323 Msa1423190:intron 20.0%
!!! TTATATTTTTGTGAGTAAGT+TGG + tig0025513:66816-66835 None:intergenic 20.0%
!!! TTTTTGTTTAAGAGTGCTTA+TGG - tig0025513:65149-65168 Msa1423190:intron 25.0%
! TTTAGTATAGGTATTTCAAG+AGG + tig0025513:65301-65320 None:intergenic 25.0%
! ATAGTAAGGTCATTTAGTAT+AGG + tig0025513:65313-65332 None:intergenic 25.0%
! TATACTAAATGACCTTACTA+TGG - tig0025513:65312-65331 Msa1423190:three_prime_UTR 25.0%
! TGAATTAGCAATAACAAACT+TGG - tig0025513:65369-65388 Msa1423190:intron 25.0%
! AATGTATGACAATGTAAAAC+AGG - tig0025513:65513-65532 Msa1423190:intron 25.0%
! CGAACATACTTATATATTGT+TGG - tig0025513:65551-65570 Msa1423190:intron 25.0%
! AGTGTAAATTAAATGGTTCT+TGG - tig0025513:65596-65615 Msa1423190:CDS 25.0%
!! ATTTCAAGTGATAGGATAAT+AGG - tig0025513:65727-65746 Msa1423190:intron 25.0%
! TTGATTCTTCTTCACAATAT+AGG - tig0025513:65836-65855 Msa1423190:CDS 25.0%
! TAAAGTAGGAAATAACTGAA+AGG + tig0025513:66040-66059 None:intergenic 25.0%
!! AAGTCTGTTTTGTATAAAGT+AGG + tig0025513:66054-66073 None:intergenic 25.0%
!!! CTAAACCATTTGTTCTTTTT+TGG - tig0025513:66093-66112 Msa1423190:intron 25.0%
! AAATGCCAAAAAAGAACAAA+TGG + tig0025513:66101-66120 None:intergenic 25.0%
!!! ATTTGTTCTTTTTTGGCATT+TGG - tig0025513:66100-66119 Msa1423190:intron 25.0%
! ATTTGGTTAACTATAATGAC+AGG - tig0025513:66117-66136 Msa1423190:CDS 25.0%
! TTTGGTTAACTATAATGACA+GGG - tig0025513:66118-66137 Msa1423190:CDS 25.0%
! TTATGTTCAATATCCACTTA+TGG - tig0025513:66287-66306 Msa1423190:intron 25.0%
! AATTATTTATCACACGACAA+AGG - tig0025513:66651-66670 Msa1423190:intron 25.0%
! GCTTAGACTTCAAATAATTA+AGG + tig0025513:67117-67136 None:intergenic 25.0%
!!! TTTTTGAAGAACTTGGTATA+CGG - tig0025513:67197-67216 Msa1423190:intron 25.0%
! TATGATATTTGTCAATATGC+TGG + tig0025513:67287-67306 None:intergenic 25.0%
! ATTGACAAATATCATAGACA+AGG - tig0025513:67291-67310 Msa1423190:CDS 25.0%
TTGAGAATTCAAGTAGTTGA+TGG + tig0025513:64822-64841 None:intergenic 30.0%
CAACTACTTGAATTCTCAAA+TGG - tig0025513:64823-64842 Msa1423190:three_prime_UTR 30.0%
CTATTGATACTCAACATGTT+GGG - tig0025513:65110-65129 Msa1423190:three_prime_UTR 30.0%
TATTGATACTCAACATGTTG+GGG - tig0025513:65111-65130 Msa1423190:three_prime_UTR 30.0%
!! TTTAAGAGTGCTTATGGAAA+TGG - tig0025513:65155-65174 Msa1423190:intron 30.0%
!! TTTATTTTCCTGTAGCTTTG+TGG - tig0025513:65265-65284 Msa1423190:three_prime_UTR 30.0%
! AAATGACCTTACTATGGTTT+TGG - tig0025513:65318-65337 Msa1423190:three_prime_UTR 30.0%
! AATGACCTTACTATGGTTTT+GGG - tig0025513:65319-65338 Msa1423190:three_prime_UTR 30.0%
! AAGCAATTTTTCATAGCTGA+AGG - tig0025513:65699-65718 Msa1423190:intron 30.0%
! AGGAAATGATTTCAAGTGAT+AGG - tig0025513:65719-65738 Msa1423190:intron 30.0%
CATAATCTACTCTTCAATCT+TGG + tig0025513:65753-65772 None:intergenic 30.0%
AGATTGAAGAGTAGATTATG+TGG - tig0025513:65753-65772 Msa1423190:intron 30.0%
GAAATAACTGAAAGGACAAA+AGG + tig0025513:66032-66051 None:intergenic 30.0%
TTAGTAGTAGCAGATTTAGT+CGG + tig0025513:66077-66096 None:intergenic 30.0%
GTGGATATTGAACATAAACA+AGG + tig0025513:66284-66303 None:intergenic 30.0%
AAGAGCTTCTTCAGTATATT+TGG + tig0025513:66448-66467 None:intergenic 30.0%
AGAATAAAATGTGTTCACCA+AGG + tig0025513:66781-66800 None:intergenic 30.0%
AATGAGAAGATAGTACACTT+TGG + tig0025513:66985-67004 None:intergenic 30.0%
TGTACTATCTTCTCATTATG+AGG - tig0025513:66988-67007 Msa1423190:intron 30.0%
! CAAATAATTAAGGTACCTTG+AGG + tig0025513:67107-67126 None:intergenic 30.0%
! CTTCTTTTAATCATTCTGCT+TGG - tig0025513:67145-67164 Msa1423190:intron 30.0%
CAAGTTCTTCAAAAATGAAG+GGG + tig0025513:67192-67211 None:intergenic 30.0%
CCAAGTTCTTCAAAAATGAA+GGG + tig0025513:67193-67212 None:intergenic 30.0%
ACCAAGTTCTTCAAAAATGA+AGG + tig0025513:67194-67213 None:intergenic 30.0%
CAAATATCATAGACAAGGTT+TGG - tig0025513:67296-67315 Msa1423190:CDS 30.0%
CTAATGTGTAGAGAGAAAAT+CGG + tig0025513:67347-67366 None:intergenic 30.0%
TCATTCATCTCATACACAAA+GGG - tig0025513:67429-67448 Msa1423190:CDS 30.0%
AGCAATCAATTTAGCTAGTT+AGG - tig0025513:67457-67476 Msa1423190:CDS 30.0%
CTGATACCATCGTATAATTT+GGG + tig0025513:67554-67573 None:intergenic 30.0%
ACTGATACCATCGTATAATT+TGG + tig0025513:67555-67574 None:intergenic 30.0%
!! AGTAGTTGATGGAATGAAAC+TGG + tig0025513:64811-64830 None:intergenic 35.0%
CAGAAGCAGAAGCAATATAA+AGG - tig0025513:64916-64935 Msa1423190:three_prime_UTR 35.0%
! TCAATTTTCAACACCCTTTG+TGG - tig0025513:64997-65016 Msa1423190:three_prime_UTR 35.0%
ATTACAACCTGTTCCACAAA+GGG + tig0025513:65013-65032 None:intergenic 35.0%
TATTACAACCTGTTCCACAA+AGG + tig0025513:65014-65033 None:intergenic 35.0%
GTGGAACAGGTTGTAATAAA+TGG - tig0025513:65016-65035 Msa1423190:three_prime_UTR 35.0%
TGTAATAAATGGAGCAGCAA+AGG - tig0025513:65027-65046 Msa1423190:three_prime_UTR 35.0%
GCTATTGATACTCAACATGT+TGG - tig0025513:65109-65128 Msa1423190:three_prime_UTR 35.0%
TAGAACCCAAAACCATAGTA+AGG + tig0025513:65327-65346 None:intergenic 35.0%
GAATTGCAATTTGTAGTCCA+AGG - tig0025513:65443-65462 Msa1423190:intron 35.0%
TCATACATTGTCATACACTG+CGG + tig0025513:65502-65521 None:intergenic 35.0%
! TGTAAAACAGGTTTGAGTTC+TGG - tig0025513:65525-65544 Msa1423190:intron 35.0%
ACAATATAGGCAACAGCATT+TGG - tig0025513:65849-65868 Msa1423190:CDS 35.0%
GCCACGAATCAAATTAGATA+CGG - tig0025513:65893-65912 Msa1423190:intron 35.0%
! ACCGTATCTAATTTGATTCG+TGG + tig0025513:65897-65916 None:intergenic 35.0%
ATTATCTGCATTCTGTGAGA+AGG - tig0025513:65923-65942 Msa1423190:intron 35.0%
! ATTGATCCTATTGAAAGCGT+TGG + tig0025513:66157-66176 None:intergenic 35.0%
ATTCCACAATTTCGACATTG+CGG + tig0025513:66219-66238 None:intergenic 35.0%
! TCTTACATTTGCATTAGCCT+TGG + tig0025513:66242-66261 None:intergenic 35.0%
GTTAAGCTAACTTAACTGAC+TGG - tig0025513:66349-66368 Msa1423190:intron 35.0%
! TGAAGAAGCTCTTGTTATAC+AGG - tig0025513:66455-66474 Msa1423190:CDS 35.0%
TGTTATACAGGATCTTCCAT+CGG - tig0025513:66467-66486 Msa1423190:CDS 35.0%
TAGAGAGATTGTTGGCAATT+TGG + tig0025513:66503-66522 None:intergenic 35.0%
AAGTGAACTGTTGTACTAGA+GGG + tig0025513:66736-66755 None:intergenic 35.0%
AAAGTGAACTGTTGTACTAG+AGG + tig0025513:66737-66756 None:intergenic 35.0%
!! AGTACAACAGTTCACTTTTC+TGG - tig0025513:66739-66758 Msa1423190:intron 35.0%
ATCTGTGATATCATGCTTGA+TGG + tig0025513:67034-67053 None:intergenic 35.0%
!! CCCTTCATTTTTGAAGAACT+TGG - tig0025513:67190-67209 Msa1423190:intron 35.0%
ATCATATGCTAATGCTACCT+TGG - tig0025513:67238-67257 Msa1423190:CDS 35.0%
GTCATTCATCTCATACACAA+AGG - tig0025513:67428-67447 Msa1423190:intron 35.0%
ACCATCGTATAATTTGGGTA+GGG + tig0025513:67549-67568 None:intergenic 35.0%
TACCATCGTATAATTTGGGT+AGG + tig0025513:67550-67569 None:intergenic 35.0%
!!! GGCTTATCTTGTTTTGGTCA+AGG - tig0025513:64754-64773 Msa1423190:three_prime_UTR 40.0%
AATAAATGGAGCAGCAAAGG+AGG - tig0025513:65030-65049 Msa1423190:three_prime_UTR 40.0%
AGCAGTATTAGCTGTGACAA+AGG - tig0025513:65063-65082 Msa1423190:three_prime_UTR 40.0%
CAACATGTTGGGGAAGATAT+TGG - tig0025513:65121-65140 Msa1423190:three_prime_UTR 40.0%
!!! GGTTTTGGGTTCTATATCTC+AGG - tig0025513:65333-65352 Msa1423190:intron 40.0%
! ACTATAATGACAGGGTGTCT+TGG - tig0025513:66126-66145 Msa1423190:CDS 40.0%
AGGATCAATATTGTTGCAGC+AGG - tig0025513:66168-66187 Msa1423190:CDS 40.0%
CAATTTCGACATTGCGGTAA+TGG + tig0025513:66213-66232 None:intergenic 40.0%
TTACCGCAATGTCGAAATTG+TGG - tig0025513:66213-66232 Msa1423190:intron 40.0%
TGTCGAAATTGTGGAATCCA+AGG - tig0025513:66222-66241 Msa1423190:intron 40.0%
TCTTCATTCCCAAACGAAGA+CGG - tig0025513:66399-66418 Msa1423190:intron 40.0%
!! GTTGGCAATTTGGTTTGCTT+CGG + tig0025513:66493-66512 None:intergenic 40.0%
CTCTGTTATAGATTTGACCG+AGG + tig0025513:66527-66546 None:intergenic 40.0%
TTTATCACACGACAAAGGCA+AGG - tig0025513:66656-66675 Msa1423190:intron 40.0%
TTATCACACGACAAAGGCAA+GGG - tig0025513:66657-66676 Msa1423190:intron 40.0%
!!! TGCACAGTTTGGTTTTACCA+GGG - tig0025513:66707-66726 Msa1423190:intron 40.0%
!! ACAGTTCACTTTTCTGGTCT+TGG - tig0025513:66745-66764 Msa1423190:intron 40.0%
GATGTACAATGTCTTATGCC+AGG - tig0025513:67051-67070 Msa1423190:CDS 40.0%
GAGTCGCTTGAATTTAACCA+AGG + tig0025513:67258-67277 None:intergenic 40.0%
GTTAAATTCAAGCGACTCAC+TGG - tig0025513:67260-67279 Msa1423190:CDS 40.0%
ATGTGTAGAGAGAAAATCGG+AGG + tig0025513:67344-67363 None:intergenic 40.0%
ACCCTACCCAAATTATACGA+TGG - tig0025513:67545-67564 Msa1423190:CDS 40.0%
! TCAGTAGTGTGCAAGTCTTT+TGG - tig0025513:67570-67589 Msa1423190:exon 40.0%
GGAATGAAACTGGCAGCTTA+AGG + tig0025513:64801-64820 None:intergenic 45.0%
GCTTCTGCTTCTCAACACAA+AGG + tig0025513:64879-64898 None:intergenic 45.0%
TTCAACACCCTTTGTGGAAC+AGG - tig0025513:65003-65022 Msa1423190:three_prime_UTR 45.0%
TGTTGGGGAAGATATTGGAC+AGG - tig0025513:65126-65145 Msa1423190:three_prime_UTR 45.0%
!! TTTCCTGTAGCTTTGTGGCA+TGG - tig0025513:65270-65289 Msa1423190:three_prime_UTR 45.0%
CATTGTCATACACTGCGGAA+GGG + tig0025513:65497-65516 None:intergenic 45.0%
ACATTGTCATACACTGCGGA+AGG + tig0025513:65498-65517 None:intergenic 45.0%
GTTGCTCCAACGCTTTCAAT+AGG - tig0025513:66148-66167 Msa1423190:CDS 45.0%
ACCTTTCTCCGTCTTCGTTT+GGG + tig0025513:66410-66429 None:intergenic 45.0%
GCCAACAATCTCTCTAACCT+CGG - tig0025513:66507-66526 Msa1423190:intron 45.0%
ACCGAGGTTAGAGAGATTGT+TGG + tig0025513:66511-66530 None:intergenic 45.0%
AGACTCCTCAACAGATGTCT+TGG - tig0025513:66548-66567 Msa1423190:intron 45.0%
CCTTACCAAGACATCTGTTG+AGG + tig0025513:66556-66575 None:intergenic 45.0%
CCTCAACAGATGTCTTGGTA+AGG - tig0025513:66553-66572 Msa1423190:intron 45.0%
TATCACACGACAAAGGCAAG+GGG - tig0025513:66658-66677 Msa1423190:intron 45.0%
!!! GTGCACAGTTTGGTTTTACC+AGG - tig0025513:66706-66725 Msa1423190:intron 45.0%
!!! TCACTTTTCTGGTCTTGGAG+AGG - tig0025513:66750-66769 Msa1423190:intron 45.0%
CTAATGGCTAATAGCAAGCC+TGG + tig0025513:67072-67091 None:intergenic 45.0%
!! GAGGCGCACTACTTTTCTAA+TGG + tig0025513:67088-67107 None:intergenic 45.0%
TAGAAAAGTAGTGCGCCTCA+AGG - tig0025513:67089-67108 Msa1423190:intron 45.0%
GAAGAACTTGGTATACGGCT+TGG - tig0025513:67202-67221 Msa1423190:intron 45.0%
! CGTGACTCGAGGATTTTGTA+AGG - tig0025513:67376-67395 Msa1423190:intron 45.0%
! GTAGTGTGCAAGTCTTTTGG+TGG - tig0025513:67573-67592 Msa1423190:exon 45.0%
CAAGGAGACTTGAGCAGCAA+TGG - tig0025513:64772-64791 Msa1423190:three_prime_UTR 50.0%
AATGGAGCAGCAAAGGAGGT+AGG - tig0025513:65034-65053 Msa1423190:three_prime_UTR 50.0%
TTAGCTGTGACAAAGGCCAG+AGG - tig0025513:65070-65089 Msa1423190:three_prime_UTR 50.0%
TGTGACAAAGGCCAGAGGAA+TGG - tig0025513:65075-65094 Msa1423190:three_prime_UTR 50.0%
TCCAGCAACTTCCATTCCTC+TGG + tig0025513:65089-65108 None:intergenic 50.0%
CTTCCATGCCACAAAGCTAC+AGG + tig0025513:65276-65295 None:intergenic 50.0%
TTTGTAGTCCAAGGCCACAG+CGG - tig0025513:65452-65471 Msa1423190:intron 50.0%
ATTCTGTGAGAAGGCCAGCA+TGG - tig0025513:65932-65951 Msa1423190:intron 50.0%
TCCCAAACGAAGACGGAGAA+AGG - tig0025513:66406-66425 Msa1423190:intron 50.0%
GACCTTTCTCCGTCTTCGTT+TGG + tig0025513:66411-66430 None:intergenic 50.0%
!! ATTTGGTTTGCTTCGGCCGA+TGG + tig0025513:66486-66505 None:intergenic 50.0%
AAAGGCAAGGGGTCAAGCTT+TGG - tig0025513:66669-66688 Msa1423190:intron 50.0%
AAGGCAAGGGGTCAAGCTTT+GGG - tig0025513:66670-66689 Msa1423190:intron 50.0%
TGGAATTCGCGTGCACAGTT+TGG - tig0025513:66696-66715 Msa1423190:intron 50.0%
AGCATTCTGAACGTGACTCG+AGG - tig0025513:67365-67384 Msa1423190:intron 50.0%
GCCAGAGGAATGGAAGTTGC+TGG - tig0025513:65085-65104 Msa1423190:three_prime_UTR 55.0%
GAAATCGACTACGACCGCTG+TGG + tig0025513:65469-65488 None:intergenic 55.0%
GTCATACACTGCGGAAGGGT+CGG + tig0025513:65493-65512 None:intergenic 55.0%
AAGGCCAGCATGGTGAGCAA+GGG - tig0025513:65942-65961 Msa1423190:intron 55.0%
!! AGGGGTCAAGCTTTGGGAGA+TGG - tig0025513:66676-66695 Msa1423190:intron 55.0%
GTTGTACTAGAGGGAAGCCC+TGG + tig0025513:66727-66746 None:intergenic 55.0%
! GTCTTGGAGAGGCATGTCCT+TGG - tig0025513:66761-66780 Msa1423190:intron 55.0%
GAAGGCCAGCATGGTGAGCA+AGG - tig0025513:65941-65960 Msa1423190:intron 60.0%
AGGCCAGCATGGTGAGCAAG+GGG - tig0025513:65943-65962 Msa1423190:intron 60.0%
TCACCCCTTGCTCACCATGC+TGG + tig0025513:65949-65968 None:intergenic 60.0%
GACTACGACCGCTGTGGCCT+TGG + tig0025513:65463-65482 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0025513 gene 64750 67616 64750 ID=Msa1423190;Name=Msa1423190
tig0025513 mRNA 64750 67616 64750 ID=Msa1423190-mRNA-1;Parent=Msa1423190;Name=Msa1423190-mRNA-1;_AED=0.14;_eAED=0.14;_QI=41|0.88|0.9|1|0.77|0.7|10|516|273
tig0025513 exon 64750 65160 64750 ID=Msa1423190-mRNA-1:exon:3074;Parent=Msa1423190-mRNA-1
tig0025513 exon 65256 65342 65256 ID=Msa1423190-mRNA-1:exon:3073;Parent=Msa1423190-mRNA-1
tig0025513 exon 65562 65693 65562 ID=Msa1423190-mRNA-1:exon:3072;Parent=Msa1423190-mRNA-1
tig0025513 exon 65797 65889 65797 ID=Msa1423190-mRNA-1:exon:3071;Parent=Msa1423190-mRNA-1
tig0025513 exon 66111 66227 66111 ID=Msa1423190-mRNA-1:exon:3070;Parent=Msa1423190-mRNA-1
tig0025513 exon 66413 66508 66413 ID=Msa1423190-mRNA-1:exon:3069;Parent=Msa1423190-mRNA-1
tig0025513 exon 66851 66907 66851 ID=Msa1423190-mRNA-1:exon:3068;Parent=Msa1423190-mRNA-1
tig0025513 exon 67012 67086 67012 ID=Msa1423190-mRNA-1:exon:3067;Parent=Msa1423190-mRNA-1
tig0025513 exon 67219 67341 67219 ID=Msa1423190-mRNA-1:exon:3066;Parent=Msa1423190-mRNA-1
tig0025513 exon 67429 67616 67429 ID=Msa1423190-mRNA-1:exon:3065;Parent=Msa1423190-mRNA-1
tig0025513 five_prime_UTR 67576 67616 67576 ID=Msa1423190-mRNA-1:five_prime_utr;Parent=Msa1423190-mRNA-1
tig0025513 CDS 67429 67575 67429 ID=Msa1423190-mRNA-1:cds;Parent=Msa1423190-mRNA-1
tig0025513 CDS 67219 67341 67219 ID=Msa1423190-mRNA-1:cds;Parent=Msa1423190-mRNA-1
tig0025513 CDS 67012 67086 67012 ID=Msa1423190-mRNA-1:cds;Parent=Msa1423190-mRNA-1
tig0025513 CDS 66851 66907 66851 ID=Msa1423190-mRNA-1:cds;Parent=Msa1423190-mRNA-1
tig0025513 CDS 66413 66508 66413 ID=Msa1423190-mRNA-1:cds;Parent=Msa1423190-mRNA-1
tig0025513 CDS 66111 66227 66111 ID=Msa1423190-mRNA-1:cds;Parent=Msa1423190-mRNA-1
tig0025513 CDS 65797 65889 65797 ID=Msa1423190-mRNA-1:cds;Parent=Msa1423190-mRNA-1
tig0025513 CDS 65580 65693 65580 ID=Msa1423190-mRNA-1:cds;Parent=Msa1423190-mRNA-1
tig0025513 three_prime_UTR 65562 65579 65562 ID=Msa1423190-mRNA-1:three_prime_utr;Parent=Msa1423190-mRNA-1
tig0025513 three_prime_UTR 65256 65342 65256 ID=Msa1423190-mRNA-1:three_prime_utr;Parent=Msa1423190-mRNA-1
tig0025513 three_prime_UTR 64750 65160 64750 ID=Msa1423190-mRNA-1:three_prime_utr;Parent=Msa1423190-mRNA-1
Gene Sequence

>Msa1423190

ATGGCTGCCTTAAGCTGCCAGTTTCATTCCATCAACTACTTGAATTCTCAAATGGTCAAAAGCAGAAGCAATCATTCTATAATTTCCTTTGTGTTGAGAAGCAGAAGCAAAAGCAGAAGCAGAAGCAGAAGCAGAAGCAATATAAAGGTTGTAATAAATGGAGCAGCAAAGGAGGTAGGAAGAGCAGCAGTATTAGCTGTGACAAAGGCCAGAGGAATGGAAGTTGCTGGAGCTATTGATACTCAACATGTTGGGGAAGATATTGGACAGCTTTGTGGCATGGAAGAGCCTCTTGAAATACCTATACTAAATGACCTTACTATGGTTTTGGGTTCTATATCTCAGTCCAAGGCCACAGCGGTCGTAGTCGATTTCACCGACCCTTCCGCAGTGTATGACAATGCAACAGCATTTGGCATGAAAAGTGTTGTGTACGTGCCACGAATCAAATTAGATACGGTTGCAGCATTATCTGCATTCTGTGAGAAGGCCAGCATGGGTGTCTTGGTTGCTCCAACGCTTTCAATAGGATCAATATTGTTGCAGCAGGCTGCAATTTCAGCTTCTTTCCATTACCGCAATGTCGAAATTGTGGAATCCAAGGCTAATGCAAATGATCTTCCATCGGCCGAAGCAAACCAAATTGCCAACAATCTCTCTAACCTCGGTCAAATCTATAACAGAGAAGACTCCTCAACAGATGTCTTGGCAAGGGGTCAAGCTTTGGGAGATGGAATTCGCGTGCACAGTTTGGTTTTACCAGGGCTTCCCTCTAGTACAACAGTTCACTTTTCTGGTCTTGGAGAGGCATGTCCTTGGTGA

Protein sequence

>Msa1423190

MAALSCQFHSINYLNSQMVKSRSNHSIISFVLRSRSKSRSRSRSRSNIKVVINGAAKEVGRAAVLAVTKARGMEVAGAIDTQHVGEDIGQLCGMEEPLEIPILNDLTMVLGSISQSKATAVVVDFTDPSAVYDNATAFGMKSVVYVPRIKLDTVAALSAFCEKASMGVLVAPTLSIGSILLQQAAISASFHYRNVEIVESKANANDLPSAEANQIANNLSNLGQIYNREDSSTDVLARGQALGDGIRVHSLVLPGLPSSTTVHFSGLGEACPW*