AlfalfaGEDB | Msa1046890

M. sativa cultivar zhongmu-4 / Msa1046890

KEGG: -
GO: GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1046890	KEH21478.1	60.714	140	40	3	1	128	1	137	2.90e-40	144

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1046890	A0A072TX99	60.714	140	40	3	1	128	1	137	1.38e-40	144

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001460	Msa1046890	0.827353	1.639309e-54	-8.615850e-47
Msa0005690	Msa1046890	0.820997	5.103883e-53	-8.615850e-47
Msa0006050	Msa1046890	0.803296	3.730195e-49	-8.615850e-47
Msa0008850	Msa1046890	0.809272	2.053498e-50	-8.615850e-47
Msa0034340	Msa1046890	0.820533	6.522652e-53	-8.615850e-47
Msa0039200	Msa1046890	0.801069	1.071591e-48	-8.615850e-47
Msa0045660	Msa1046890	0.802175	6.354585e-49	-8.615850e-47
Msa0046360	Msa1046890	0.810227	1.280190e-50	-8.615850e-47
Msa0046410	Msa1046890	0.817665	2.930538e-52	-8.615850e-47
Msa0046670	Msa1046890	0.807476	4.960771e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1046890	MtrunA17_Chr7g0214751	94.805	77	4	0	1	77	1	77	4.77e-44	145
Msa1046890	MtrunA17_Chr3g0112511	68.421	57	18	0	104	160	660	716	1.05e-16	76.6
Msa1046890	MtrunA17_Chr3g0100971	61.404	57	22	0	104	160	668	724	9.60e-13	65.1
Msa1046890	MtrunA17_Chr3g0100831	63.793	58	21	0	104	161	666	723	9.73e-13	65.1
Msa1046890	MtrunA17_Chr3g0100761	61.404	57	22	0	104	160	628	684	1.02e-12	65.1
Msa1046890	MtrunA17_Chr3g0100851	47.126	87	44	1	74	160	518	602	3.51e-12	63.5
Msa1046890	MtrunA17_Chr3g0100791	47.126	87	44	1	74	160	177	261	1.00e-11	62.0
Msa1046890	MtrunA17_Chr3g0101321	51.786	56	27	0	101	156	658	713	3.28e-11	60.5
Msa1046890	MtrunA17_Chr3g0100731	57.895	57	24	0	104	160	425	481	7.65e-11	59.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 35 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGGATTTGGGGTTGCATC+AGG	0.414490	7_2:+7513230	Msa1046890:CDS
AATAAAACGTAGCGTTTGTA+GGG	0.464441	7_2:-7513148	None:intergenic
AATCAAATGTAGACTTTGCG+AGG	0.589310	7_2:+7512852	Msa1046890:intron
ACCTCAAGTGGATCAAATAA+TGG	0.398212	7_2:-7512926	None:intergenic
AGAAAGAGAAGCAATGGAAA+AGG	0.453395	7_2:-7511114	None:intergenic
AGGTAGAGAAAGAGAAGCAA+TGG	0.477899	7_2:-7511120	None:intergenic
AGTACCAGAGATTGAGATTT+AGG	0.204966	7_2:-7511140	None:intergenic
AGTTCCAGCAATGACAGCAA+TGG	0.596327	7_2:-7511521	None:intergenic
ATAGACGTAATTAAAGAGTT+GGG	0.493006	7_2:+7513192	Msa1046890:CDS
ATCAAATGTAGACTTTGCGA+GGG	0.628882	7_2:+7512853	Msa1046890:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGAAAGAAGAATACTGAC+CGG	-	chr7_2:7511272-7511291	None:intergenic	30.0%
CATTTCATTAATGTCGAGTT+TGG	-	chr7_2:7511328-7511347	None:intergenic	30.0%
TCAAATAAGCCAAATCAAAG+AGG	+	chr7_2:7511869-7511888	Msa1046890:intron	30.0%
AACATCAACAACCGAAAATT+TGG	+	chr7_2:7512354-7512373	Msa1046890:intron	30.0%
ACATAGTTCAAATAACCCAA+AGG	+	chr7_2:7512447-7512466	Msa1046890:intron	30.0%
TGAAGTTTAAATACCTCAAG+TGG	-	chr7_2:7512941-7512960	None:intergenic	30.0%
AGAAAAGTAAGACATCTTAC+CGG	+	chr7_2:7513074-7513093	Msa1046890:intron	30.0%
AATAAAACGTAGCGTTTGTA+GGG	-	chr7_2:7513151-7513170	None:intergenic	30.0%
TAATAAAACGTAGCGTTTGT+AGG	-	chr7_2:7513152-7513171	None:intergenic	30.0%
AATGAAAGAAGAATACTGAC+CGG	-	chr7_2:7511272-7511291	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	7511010	7513305	7511010	ID=Msa1046890;Name=Msa1046890
chr7_2	mRNA	7511010	7513305	7511010	ID=Msa1046890-mRNA-1;Parent=Msa1046890;Name=Msa1046890-mRNA-1;_AED=0.29;_eAED=0.53;_QI=88\|0.5\|0.4\|1\|1\|1\|5\|0\|164
chr7_2	exon	7511010	7511157	7511010	ID=Msa1046890-mRNA-1:exon:1890;Parent=Msa1046890-mRNA-1
chr7_2	exon	7511238	7511271	7511238	ID=Msa1046890-mRNA-1:exon:1891;Parent=Msa1046890-mRNA-1
chr7_2	exon	7511449	7511586	7511449	ID=Msa1046890-mRNA-1:exon:1892;Parent=Msa1046890-mRNA-1
chr7_2	exon	7512864	7512946	7512864	ID=Msa1046890-mRNA-1:exon:1893;Parent=Msa1046890-mRNA-1
chr7_2	exon	7513126	7513305	7513126	ID=Msa1046890-mRNA-1:exon:1894;Parent=Msa1046890-mRNA-1
chr7_2	five_prime_UTR	7511010	7511097	7511010	ID=Msa1046890-mRNA-1:five_prime_utr;Parent=Msa1046890-mRNA-1
chr7_2	CDS	7511098	7511157	7511098	ID=Msa1046890-mRNA-1:cds;Parent=Msa1046890-mRNA-1
chr7_2	CDS	7511238	7511271	7511238	ID=Msa1046890-mRNA-1:cds;Parent=Msa1046890-mRNA-1
chr7_2	CDS	7511449	7511586	7511449	ID=Msa1046890-mRNA-1:cds;Parent=Msa1046890-mRNA-1
chr7_2	CDS	7512864	7512946	7512864	ID=Msa1046890-mRNA-1:cds;Parent=Msa1046890-mRNA-1
chr7_2	CDS	7513126	7513305	7513126	ID=Msa1046890-mRNA-1:cds;Parent=Msa1046890-mRNA-1

Gene Sequence

>Msa1046890

ATGGCTTCACTTTTGTCCTTTTCCATTGCTTCTCTTTCTCTACCTAAATCTCAATCTCTGGATCCTGATAATCTCTCCGATTCTTCTTTCTCCGGTAAAAGCAACGGTAAGAGTGGTAGTTGTTGTTTTCCAACGTCGTTTGAACGGAGAAAGATGGTTCTGTCTTCCATTGCTGTCATTGCTGGAACTTTTTGTAAAGGAGGAATTGGTCTTGCATCTGAATTTGCTGACAACTTTGCGAGGGAAATCCTTACAAAATACAAGTTGTTGAAGGTTCTTGATCATGAATCTTCTCCATTATTTGATCCACTTGAGGATGGCATTGGAGAGATGACAACCCTACAAACGCTACGTTTTATTAATTTAGGTATGTATGGAGCTATAGACGTAATTAAAGAGTTGGGAAAGCTGATGCAGATAAGGGATTTGGGGTTGCATCAGGATCGGAGAGAAAATGGAAGCATTCTTCTTCAATCGATAAAATGCAACACTTAG

Protein sequence

>Msa1046890

MASLLSFSIASLSLPKSQSLDPDNLSDSSFSGKSNGKSGSCCFPTSFERRKMVLSSIAVIAGTFCKGGIGLASEFADNFAREILTKYKLLKVLDHESSPLFDPLEDGIGEMTTLQTLRFINLGMYGAIDVIKELGKLMQIRDLGLHQDRRENGSILLQSIKCNT*