AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1046890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1046890 MtrunA17_Chr7g0214751 94.805 77 4 0 1 77 1 77 4.77e-44 145
Msa1046890 MtrunA17_Chr3g0112511 68.421 57 18 0 104 160 660 716 1.05e-16 76.6
Msa1046890 MtrunA17_Chr3g0100971 61.404 57 22 0 104 160 668 724 9.60e-13 65.1
Msa1046890 MtrunA17_Chr3g0100831 63.793 58 21 0 104 161 666 723 9.73e-13 65.1
Msa1046890 MtrunA17_Chr3g0100761 61.404 57 22 0 104 160 628 684 1.02e-12 65.1
Msa1046890 MtrunA17_Chr3g0100851 47.126 87 44 1 74 160 518 602 3.51e-12 63.5
Msa1046890 MtrunA17_Chr3g0100791 47.126 87 44 1 74 160 177 261 1.00e-11 62.0
Msa1046890 MtrunA17_Chr3g0101321 51.786 56 27 0 101 156 658 713 3.28e-11 60.5
Msa1046890 MtrunA17_Chr3g0100731 57.895 57 24 0 104 160 425 481 7.65e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 35 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTACCAGAGATTGAGATTT+AGG 0.204966 7_2:-7511140 None:intergenic
TCTTCCATTGCTGTCATTGC+TGG 0.261109 7_2:+7511517 Msa1046890:CDS
GCTGATGCAGATAAGGGATT+TGG 0.308833 7_2:+7513218 Msa1046890:CDS
CTGATGCAGATAAGGGATTT+GGG 0.333244 7_2:+7513219 Msa1046890:CDS
CATCAGGATCGGAGAGAAAA+TGG 0.352583 7_2:+7513246 Msa1046890:CDS
TTTATTAATTTAGGTATGTA+TGG 0.360480 7_2:+7513165 Msa1046890:CDS
GAAGAATCGGAGAGATTATC+AGG 0.361485 7_2:-7511241 None:intergenic
TAATAAAACGTAGCGTTTGT+AGG 0.375555 7_2:-7513149 None:intergenic
ACCTCAAGTGGATCAAATAA+TGG 0.398212 7_2:-7512926 None:intergenic
AAGGGATTTGGGGTTGCATC+AGG 0.414490 7_2:+7513230 Msa1046890:CDS
CTCTCCGATTCTTCTTTCTC+CGG 0.431412 7_2:+7511250 Msa1046890:CDS
TACAAAATACAAGTTGTTGA+AGG 0.446835 7_2:+7512883 Msa1046890:CDS
AGAAAGAGAAGCAATGGAAA+AGG 0.453395 7_2:-7511114 None:intergenic
AATAAAACGTAGCGTTTGTA+GGG 0.464441 7_2:-7513148 None:intergenic
TGGGAAAGCTGATGCAGATA+AGG 0.465137 7_2:+7513211 Msa1046890:CDS
TATAGACGTAATTAAAGAGT+TGG 0.469452 7_2:+7513191 Msa1046890:CDS
AGGTAGAGAAAGAGAAGCAA+TGG 0.477899 7_2:-7511120 None:intergenic
TTTCAATCAAAGGATGGCAT+TGG 0.481402 7_2:+7513114 Msa1046890:intron
GGGAAAGCTGATGCAGATAA+GGG 0.486316 7_2:+7513212 Msa1046890:CDS
GTACTGTACTTTGTGTTGTG+TGG 0.489766 7_2:-7511062 None:intergenic
GTCGTTTGAACGGAGAAAGA+TGG 0.491223 7_2:+7511489 Msa1046890:CDS
ATAGACGTAATTAAAGAGTT+GGG 0.493006 7_2:+7513192 Msa1046890:CDS
TCTACCTAAATCTCAATCTC+TGG 0.493829 7_2:+7511136 Msa1046890:CDS
CAGTACAGAAGTTACAGTTA+TGG 0.509987 7_2:+7511079 Msa1046890:exon
TGAAGTTTAAATACCTCAAG+TGG 0.512621 7_2:-7512938 None:intergenic
GTACTTTGTGTTGTGTGGAA+TGG 0.513767 7_2:-7511057 None:intergenic
TCCATTATTTGATCCACTTG+AGG 0.521700 7_2:+7512925 Msa1046890:CDS
CTGACCGGAGAAAGAAGAAT+CGG 0.525266 7_2:-7511254 None:intergenic
ATTTGGGGTTGCATCAGGAT+CGG 0.548162 7_2:+7513235 Msa1046890:CDS
TTTCTCCGTTCAAACGACGT+TGG 0.585440 7_2:-7511484 None:intergenic
AATCAAATGTAGACTTTGCG+AGG 0.589310 7_2:+7512852 Msa1046890:intron
TGATGCAGATAAGGGATTTG+GGG 0.590888 7_2:+7513220 Msa1046890:CDS
AGTTCCAGCAATGACAGCAA+TGG 0.596327 7_2:-7511521 None:intergenic
GGTAAAAGCAACGGTAAGAG+TGG 0.605043 7_2:+7511448 Msa1046890:intron
ATCAAATGTAGACTTTGCGA+GGG 0.628882 7_2:+7512853 Msa1046890:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGCTATTATTAATTGAAAT+TGG - chr7_2:7512485-7512504 None:intergenic 15.0%
!! TTTATTAATTTAGGTATGTA+TGG + chr7_2:7513165-7513184 Msa1046890:CDS 15.0%
!! AAGCTATTATTAATTGAAAT+TGG - chr7_2:7512485-7512504 None:intergenic 15.0%
!! TTTATTAATTTAGGTATGTA+TGG + chr7_2:7513165-7513184 Msa1046890:CDS 15.0%
!! GAAATGATAATAGTTAAGTA+TGG - chr7_2:7511212-7511231 None:intergenic 20.0%
!! TAACTATTATCATTTCTTTC+AGG + chr7_2:7511216-7511235 Msa1046890:intron 20.0%
!! AATCAACTTAACTTATGTAT+AGG + chr7_2:7511667-7511686 Msa1046890:intron 20.0%
!!! TGTTTTCATAAACTATCTTT+GGG + chr7_2:7511745-7511764 Msa1046890:intron 20.0%
!!! TTATTTCTATAAACTCTCTT+GGG + chr7_2:7512003-7512022 Msa1046890:intron 20.0%
!!! TCATTAAGCTAAGTTTTTTT+AGG - chr7_2:7512032-7512051 None:intergenic 20.0%
!! TATACAATACAACAATATCA+TGG - chr7_2:7512167-7512186 None:intergenic 20.0%
!! ACGACAAATAATATAATGAA+GGG - chr7_2:7512190-7512209 None:intergenic 20.0%
!! AACGACAAATAATATAATGA+AGG - chr7_2:7512191-7512210 None:intergenic 20.0%
!! TACTCGTTCTAATTTAAATA+GGG - chr7_2:7512515-7512534 None:intergenic 20.0%
!! ATACTCGTTCTAATTTAAAT+AGG - chr7_2:7512516-7512535 None:intergenic 20.0%
!! NNNNNNNNNNTGACCTTCTT+CGG - chr7_2:7512550-7512569 None:intergenic 20.0%
!!! TTAAATCCTCAAATTTTTCA+AGG - chr7_2:7512691-7512710 None:intergenic 20.0%
!!! ATTACTTGTTTTTACAACTA+TGG + chr7_2:7512829-7512848 Msa1046890:intron 20.0%
!! GAAATGATAATAGTTAAGTA+TGG - chr7_2:7511212-7511231 None:intergenic 20.0%
!! TAACTATTATCATTTCTTTC+AGG + chr7_2:7511216-7511235 Msa1046890:intron 20.0%
!! AATCAACTTAACTTATGTAT+AGG + chr7_2:7511667-7511686 Msa1046890:intron 20.0%
!!! TGTTTTCATAAACTATCTTT+GGG + chr7_2:7511745-7511764 Msa1046890:intron 20.0%
!!! TTATTTCTATAAACTCTCTT+GGG + chr7_2:7512003-7512022 Msa1046890:intron 20.0%
!!! TCATTAAGCTAAGTTTTTTT+AGG - chr7_2:7512032-7512051 None:intergenic 20.0%
!! TATACAATACAACAATATCA+TGG - chr7_2:7512167-7512186 None:intergenic 20.0%
!! ACGACAAATAATATAATGAA+GGG - chr7_2:7512190-7512209 None:intergenic 20.0%
!! AACGACAAATAATATAATGA+AGG - chr7_2:7512191-7512210 None:intergenic 20.0%
!! TACTCGTTCTAATTTAAATA+GGG - chr7_2:7512515-7512534 None:intergenic 20.0%
!! ATACTCGTTCTAATTTAAAT+AGG - chr7_2:7512516-7512535 None:intergenic 20.0%
!! NNNNNNNNNNTGACCTTCTT+CGG - chr7_2:7512550-7512569 None:intergenic 20.0%
!!! TTAAATCCTCAAATTTTTCA+AGG - chr7_2:7512691-7512710 None:intergenic 20.0%
!!! ATTACTTGTTTTTACAACTA+TGG + chr7_2:7512829-7512848 Msa1046890:intron 20.0%
! ATTTCATTAATGTCGAGTTT+GGG - chr7_2:7511327-7511346 None:intergenic 25.0%
! AAATATGCTATTAACTTTGC+TGG - chr7_2:7511378-7511397 None:intergenic 25.0%
!!! TAATATCTAACCGTTTTTTC+AGG + chr7_2:7511427-7511446 Msa1046890:intron 25.0%
!! CTGTTTTCATAAACTATCTT+TGG + chr7_2:7511744-7511763 Msa1046890:intron 25.0%
! ACTTATTTGAGCTTATGTAT+TGG + chr7_2:7511907-7511926 Msa1046890:intron 25.0%
!!! CTTATTTCTATAAACTCTCT+TGG + chr7_2:7512002-7512021 Msa1046890:intron 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG + chr7_2:7512140-7512159 Msa1046890:intron 25.0%
! TCCATTATACTAAACAATGT+AGG + chr7_2:7512258-7512277 Msa1046890:intron 25.0%
! TCCTACATTGTTTAGTATAA+TGG - chr7_2:7512262-7512281 None:intergenic 25.0%
! ACTCGTTCTAATTTAAATAG+GGG - chr7_2:7512514-7512533 None:intergenic 25.0%
! TTTGATCCTTGAAAAATTTG+AGG + chr7_2:7512682-7512701 Msa1046890:intron 25.0%
!! TCAACAACTTGTATTTTGTA+AGG - chr7_2:7512883-7512902 None:intergenic 25.0%
! TACAAAATACAAGTTGTTGA+AGG + chr7_2:7512883-7512902 Msa1046890:CDS 25.0%
!! TAGTCTTTGATTTCAATCAA+AGG + chr7_2:7513104-7513123 Msa1046890:intron 25.0%
!!! ACGCTACGTTTTATTAATTT+AGG + chr7_2:7513156-7513175 Msa1046890:CDS 25.0%
! TATAGACGTAATTAAAGAGT+TGG + chr7_2:7513191-7513210 Msa1046890:CDS 25.0%
! ATAGACGTAATTAAAGAGTT+GGG + chr7_2:7513192-7513211 Msa1046890:CDS 25.0%
! ATTTCATTAATGTCGAGTTT+GGG - chr7_2:7511327-7511346 None:intergenic 25.0%
! AAATATGCTATTAACTTTGC+TGG - chr7_2:7511378-7511397 None:intergenic 25.0%
!!! TAATATCTAACCGTTTTTTC+AGG + chr7_2:7511427-7511446 Msa1046890:intron 25.0%
!! CTGTTTTCATAAACTATCTT+TGG + chr7_2:7511744-7511763 Msa1046890:intron 25.0%
! ACTTATTTGAGCTTATGTAT+TGG + chr7_2:7511907-7511926 Msa1046890:intron 25.0%
!!! CTTATTTCTATAAACTCTCT+TGG + chr7_2:7512002-7512021 Msa1046890:intron 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG + chr7_2:7512140-7512159 Msa1046890:intron 25.0%
! TCCATTATACTAAACAATGT+AGG + chr7_2:7512258-7512277 Msa1046890:intron 25.0%
! TCCTACATTGTTTAGTATAA+TGG - chr7_2:7512262-7512281 None:intergenic 25.0%
! ACTCGTTCTAATTTAAATAG+GGG - chr7_2:7512514-7512533 None:intergenic 25.0%
! TTTGATCCTTGAAAAATTTG+AGG + chr7_2:7512682-7512701 Msa1046890:intron 25.0%
!! TCAACAACTTGTATTTTGTA+AGG - chr7_2:7512883-7512902 None:intergenic 25.0%
! TACAAAATACAAGTTGTTGA+AGG + chr7_2:7512883-7512902 Msa1046890:CDS 25.0%
!! TAGTCTTTGATTTCAATCAA+AGG + chr7_2:7513104-7513123 Msa1046890:intron 25.0%
!!! ACGCTACGTTTTATTAATTT+AGG + chr7_2:7513156-7513175 Msa1046890:CDS 25.0%
! TATAGACGTAATTAAAGAGT+TGG + chr7_2:7513191-7513210 Msa1046890:CDS 25.0%
! ATAGACGTAATTAAAGAGTT+GGG + chr7_2:7513192-7513211 Msa1046890:CDS 25.0%
AATGAAAGAAGAATACTGAC+CGG - chr7_2:7511272-7511291 None:intergenic 30.0%
CATTTCATTAATGTCGAGTT+TGG - chr7_2:7511328-7511347 None:intergenic 30.0%
!!! GTTGCTTTTACCTGAAAAAA+CGG - chr7_2:7511440-7511459 None:intergenic 30.0%
!!! GTTTTTTCAGGTAAAAGCAA+CGG + chr7_2:7511439-7511458 Msa1046890:intron 30.0%
! ATTGCTGGAACTTTTTGTAA+AGG + chr7_2:7511532-7511551 Msa1046890:CDS 30.0%
! ACTTTTTGTAAAGGAGGAAT+TGG + chr7_2:7511541-7511560 Msa1046890:CDS 30.0%
TCAAATAAGCCAAATCAAAG+AGG + chr7_2:7511869-7511888 Msa1046890:intron 30.0%
AACATCAACAACCGAAAATT+TGG + chr7_2:7512354-7512373 Msa1046890:intron 30.0%
ACATAGTTCAAATAACCCAA+AGG + chr7_2:7512447-7512466 Msa1046890:intron 30.0%
TGAAGTTTAAATACCTCAAG+TGG - chr7_2:7512941-7512960 None:intergenic 30.0%
! ACTTGAGGTATTTAAACTTC+AGG + chr7_2:7512940-7512959 Msa1046890:intron 30.0%
AGAAAAGTAAGACATCTTAC+CGG + chr7_2:7513074-7513093 Msa1046890:intron 30.0%
! CTTTGATTTCAATCAAAGGA+TGG + chr7_2:7513108-7513127 Msa1046890:intron 30.0%
AATAAAACGTAGCGTTTGTA+GGG - chr7_2:7513151-7513170 None:intergenic 30.0%
TAATAAAACGTAGCGTTTGT+AGG - chr7_2:7513152-7513171 None:intergenic 30.0%
AATGAAAGAAGAATACTGAC+CGG - chr7_2:7511272-7511291 None:intergenic 30.0%
CATTTCATTAATGTCGAGTT+TGG - chr7_2:7511328-7511347 None:intergenic 30.0%
!!! GTTGCTTTTACCTGAAAAAA+CGG - chr7_2:7511440-7511459 None:intergenic 30.0%
!!! GTTTTTTCAGGTAAAAGCAA+CGG + chr7_2:7511439-7511458 Msa1046890:intron 30.0%
! ATTGCTGGAACTTTTTGTAA+AGG + chr7_2:7511532-7511551 Msa1046890:CDS 30.0%
! ACTTTTTGTAAAGGAGGAAT+TGG + chr7_2:7511541-7511560 Msa1046890:CDS 30.0%
TCAAATAAGCCAAATCAAAG+AGG + chr7_2:7511869-7511888 Msa1046890:intron 30.0%
AACATCAACAACCGAAAATT+TGG + chr7_2:7512354-7512373 Msa1046890:intron 30.0%
ACATAGTTCAAATAACCCAA+AGG + chr7_2:7512447-7512466 Msa1046890:intron 30.0%
TGAAGTTTAAATACCTCAAG+TGG - chr7_2:7512941-7512960 None:intergenic 30.0%
! ACTTGAGGTATTTAAACTTC+AGG + chr7_2:7512940-7512959 Msa1046890:intron 30.0%
AGAAAAGTAAGACATCTTAC+CGG + chr7_2:7513074-7513093 Msa1046890:intron 30.0%
! CTTTGATTTCAATCAAAGGA+TGG + chr7_2:7513108-7513127 Msa1046890:intron 30.0%
AATAAAACGTAGCGTTTGTA+GGG - chr7_2:7513151-7513170 None:intergenic 30.0%
TAATAAAACGTAGCGTTTGT+AGG - chr7_2:7513152-7513171 None:intergenic 30.0%
!!! AAGGGAGTGTGTTTTAAAGA+TGG - chr7_2:7511021-7511040 None:intergenic 35.0%
! GGAAGTTGCTAGATTTTGAA+GGG - chr7_2:7511039-7511058 None:intergenic 35.0%
! TGGAAGTTGCTAGATTTTGA+AGG - chr7_2:7511040-7511059 None:intergenic 35.0%
CAGTACAGAAGTTACAGTTA+TGG + chr7_2:7511079-7511098 Msa1046890:exon 35.0%
AGAAAGAGAAGCAATGGAAA+AGG - chr7_2:7511117-7511136 None:intergenic 35.0%
TCTACCTAAATCTCAATCTC+TGG + chr7_2:7511136-7511155 Msa1046890:CDS 35.0%
AGTACCAGAGATTGAGATTT+AGG - chr7_2:7511143-7511162 None:intergenic 35.0%
TGAATGAGTGTGTGAATTGA+AGG - chr7_2:7511186-7511205 None:intergenic 35.0%
GTTCTTTCAATCAGTCTTAG+AGG + chr7_2:7511825-7511844 Msa1046890:intron 35.0%
AAACAAGCTCCTCTTTGATT+TGG - chr7_2:7511881-7511900 None:intergenic 35.0%
! AAATCAAAGAGGAGCTTGTT+TGG + chr7_2:7511880-7511899 Msa1046890:intron 35.0%
ATAAGCACTTTGCAATGGTT+TGG + chr7_2:7511931-7511950 Msa1046890:intron 35.0%
AACAATATCATGGTCCTGTT+TGG - chr7_2:7512157-7512176 None:intergenic 35.0%
! ACACCTCTGTTCCAAATTTT+CGG - chr7_2:7512368-7512387 None:intergenic 35.0%
AACGTATGTCTATGAGGTAT+CGG + chr7_2:7512388-7512407 Msa1046890:intron 35.0%
! AGTTTGAGTTTGTAACCTCA+TGG + chr7_2:7512423-7512442 Msa1046890:intron 35.0%
! GTTTGAGTTTGTAACCTCAT+GGG + chr7_2:7512424-7512443 Msa1046890:intron 35.0%
TATTTGAACTATGTCCCATG+AGG - chr7_2:7512441-7512460 None:intergenic 35.0%
TAGTTCAAATAACCCAAAGG+AGG + chr7_2:7512450-7512469 Msa1046890:intron 35.0%
! TGGTATTTTACACCTCCTTT+GGG - chr7_2:7512465-7512484 None:intergenic 35.0%
! TTGGTATTTTACACCTCCTT+TGG - chr7_2:7512466-7512485 None:intergenic 35.0%
ATAGTAAGAAGTTCCGAAGA+AGG + chr7_2:7512534-7512553 Msa1046890:intron 35.0%
TGCAAGCATATTAGTGAAGA+TGG + chr7_2:7512716-7512735 Msa1046890:intron 35.0%
CATCCTTAAGTGCAATAAGT+CGG + chr7_2:7512744-7512763 Msa1046890:intron 35.0%
! CAGAAGCAGTTGTTATTGAT+AGG - chr7_2:7512772-7512791 None:intergenic 35.0%
AACAACTGCTTCTGATTTCA+TGG + chr7_2:7512778-7512797 Msa1046890:intron 35.0%
AACAAGTAATGACCGAACAT+GGG - chr7_2:7512819-7512838 None:intergenic 35.0%
AAACAAGTAATGACCGAACA+TGG - chr7_2:7512820-7512839 None:intergenic 35.0%
AATCAAATGTAGACTTTGCG+AGG + chr7_2:7512852-7512871 Msa1046890:intron 35.0%
ATCAAATGTAGACTTTGCGA+GGG + chr7_2:7512853-7512872 Msa1046890:intron 35.0%
TCCATTATTTGATCCACTTG+AGG + chr7_2:7512925-7512944 Msa1046890:CDS 35.0%
ACCTCAAGTGGATCAAATAA+TGG - chr7_2:7512929-7512948 None:intergenic 35.0%
ATTTGTATTCCTTGCGTCTA+AGG - chr7_2:7513021-7513040 None:intergenic 35.0%
! AAATGTTATCGAGTTGCCAA+AGG + chr7_2:7513037-7513056 Msa1046890:intron 35.0%
! AATCAAAGACTATCTAGAGC+CGG - chr7_2:7513096-7513115 None:intergenic 35.0%
TTTCAATCAAAGGATGGCAT+TGG + chr7_2:7513114-7513133 Msa1046890:intron 35.0%
!!! AAGGGAGTGTGTTTTAAAGA+TGG - chr7_2:7511021-7511040 None:intergenic 35.0%
! GGAAGTTGCTAGATTTTGAA+GGG - chr7_2:7511039-7511058 None:intergenic 35.0%
! TGGAAGTTGCTAGATTTTGA+AGG - chr7_2:7511040-7511059 None:intergenic 35.0%
CAGTACAGAAGTTACAGTTA+TGG + chr7_2:7511079-7511098 Msa1046890:exon 35.0%
AGAAAGAGAAGCAATGGAAA+AGG - chr7_2:7511117-7511136 None:intergenic 35.0%
TCTACCTAAATCTCAATCTC+TGG + chr7_2:7511136-7511155 Msa1046890:CDS 35.0%
AGTACCAGAGATTGAGATTT+AGG - chr7_2:7511143-7511162 None:intergenic 35.0%
TGAATGAGTGTGTGAATTGA+AGG - chr7_2:7511186-7511205 None:intergenic 35.0%
GTTCTTTCAATCAGTCTTAG+AGG + chr7_2:7511825-7511844 Msa1046890:intron 35.0%
AAACAAGCTCCTCTTTGATT+TGG - chr7_2:7511881-7511900 None:intergenic 35.0%
! AAATCAAAGAGGAGCTTGTT+TGG + chr7_2:7511880-7511899 Msa1046890:intron 35.0%
ATAAGCACTTTGCAATGGTT+TGG + chr7_2:7511931-7511950 Msa1046890:intron 35.0%
AACAATATCATGGTCCTGTT+TGG - chr7_2:7512157-7512176 None:intergenic 35.0%
! ACACCTCTGTTCCAAATTTT+CGG - chr7_2:7512368-7512387 None:intergenic 35.0%
AACGTATGTCTATGAGGTAT+CGG + chr7_2:7512388-7512407 Msa1046890:intron 35.0%
! AGTTTGAGTTTGTAACCTCA+TGG + chr7_2:7512423-7512442 Msa1046890:intron 35.0%
! GTTTGAGTTTGTAACCTCAT+GGG + chr7_2:7512424-7512443 Msa1046890:intron 35.0%
TATTTGAACTATGTCCCATG+AGG - chr7_2:7512441-7512460 None:intergenic 35.0%
TAGTTCAAATAACCCAAAGG+AGG + chr7_2:7512450-7512469 Msa1046890:intron 35.0%
! TGGTATTTTACACCTCCTTT+GGG - chr7_2:7512465-7512484 None:intergenic 35.0%
! TTGGTATTTTACACCTCCTT+TGG - chr7_2:7512466-7512485 None:intergenic 35.0%
ATAGTAAGAAGTTCCGAAGA+AGG + chr7_2:7512534-7512553 Msa1046890:intron 35.0%
TGCAAGCATATTAGTGAAGA+TGG + chr7_2:7512716-7512735 Msa1046890:intron 35.0%
CATCCTTAAGTGCAATAAGT+CGG + chr7_2:7512744-7512763 Msa1046890:intron 35.0%
! CAGAAGCAGTTGTTATTGAT+AGG - chr7_2:7512772-7512791 None:intergenic 35.0%
AACAACTGCTTCTGATTTCA+TGG + chr7_2:7512778-7512797 Msa1046890:intron 35.0%
AACAAGTAATGACCGAACAT+GGG - chr7_2:7512819-7512838 None:intergenic 35.0%
AAACAAGTAATGACCGAACA+TGG - chr7_2:7512820-7512839 None:intergenic 35.0%
AATCAAATGTAGACTTTGCG+AGG + chr7_2:7512852-7512871 Msa1046890:intron 35.0%
ATCAAATGTAGACTTTGCGA+GGG + chr7_2:7512853-7512872 Msa1046890:intron 35.0%
TCCATTATTTGATCCACTTG+AGG + chr7_2:7512925-7512944 Msa1046890:CDS 35.0%
ACCTCAAGTGGATCAAATAA+TGG - chr7_2:7512929-7512948 None:intergenic 35.0%
ATTTGTATTCCTTGCGTCTA+AGG - chr7_2:7513021-7513040 None:intergenic 35.0%
! AAATGTTATCGAGTTGCCAA+AGG + chr7_2:7513037-7513056 Msa1046890:intron 35.0%
! AATCAAAGACTATCTAGAGC+CGG - chr7_2:7513096-7513115 None:intergenic 35.0%
TTTCAATCAAAGGATGGCAT+TGG + chr7_2:7513114-7513133 Msa1046890:intron 35.0%
GTACTTTGTGTTGTGTGGAA+TGG - chr7_2:7511060-7511079 None:intergenic 40.0%
GTACTGTACTTTGTGTTGTG+TGG - chr7_2:7511065-7511084 None:intergenic 40.0%
AGGTAGAGAAAGAGAAGCAA+TGG - chr7_2:7511123-7511142 None:intergenic 40.0%
GAAGAATCGGAGAGATTATC+AGG - chr7_2:7511244-7511263 None:intergenic 40.0%
! GTTTTCCAACGTCGTTTGAA+CGG + chr7_2:7511479-7511498 Msa1046890:CDS 40.0%
! GCTGGAACTTTTTGTAAAGG+AGG + chr7_2:7511535-7511554 Msa1046890:CDS 40.0%
TTGGCATAAGCACTTTGCAA+TGG + chr7_2:7511926-7511945 Msa1046890:intron 40.0%
!! CAATGGTTTGGTAGAGCTTA+TGG + chr7_2:7511943-7511962 Msa1046890:intron 40.0%
! CTTATCTCTAAGAGTGAAGC+TGG + chr7_2:7512298-7512317 Msa1046890:intron 40.0%
AGAGTGAAGCTGGACAATAA+TGG + chr7_2:7512308-7512327 Msa1046890:intron 40.0%
! CAACCGAAAATTTGGAACAG+AGG + chr7_2:7512362-7512381 Msa1046890:intron 40.0%
AGGTGTAACGTATGTCTATG+AGG + chr7_2:7512382-7512401 Msa1046890:intron 40.0%
GTATTGAAACCTCCCATGTT+CGG + chr7_2:7512804-7512823 Msa1046890:intron 40.0%
! CTATGCTTGCTAGTATCCTT+TGG - chr7_2:7513056-7513075 None:intergenic 40.0%
CTGATGCAGATAAGGGATTT+GGG + chr7_2:7513219-7513238 Msa1046890:CDS 40.0%
TGATGCAGATAAGGGATTTG+GGG + chr7_2:7513220-7513239 Msa1046890:CDS 40.0%
GTACTTTGTGTTGTGTGGAA+TGG - chr7_2:7511060-7511079 None:intergenic 40.0%
GTACTGTACTTTGTGTTGTG+TGG - chr7_2:7511065-7511084 None:intergenic 40.0%
AGGTAGAGAAAGAGAAGCAA+TGG - chr7_2:7511123-7511142 None:intergenic 40.0%
GAAGAATCGGAGAGATTATC+AGG - chr7_2:7511244-7511263 None:intergenic 40.0%
! GTTTTCCAACGTCGTTTGAA+CGG + chr7_2:7511479-7511498 Msa1046890:CDS 40.0%
! GCTGGAACTTTTTGTAAAGG+AGG + chr7_2:7511535-7511554 Msa1046890:CDS 40.0%
TTGGCATAAGCACTTTGCAA+TGG + chr7_2:7511926-7511945 Msa1046890:intron 40.0%
!! CAATGGTTTGGTAGAGCTTA+TGG + chr7_2:7511943-7511962 Msa1046890:intron 40.0%
! CTTATCTCTAAGAGTGAAGC+TGG + chr7_2:7512298-7512317 Msa1046890:intron 40.0%
AGAGTGAAGCTGGACAATAA+TGG + chr7_2:7512308-7512327 Msa1046890:intron 40.0%
! CAACCGAAAATTTGGAACAG+AGG + chr7_2:7512362-7512381 Msa1046890:intron 40.0%
AGGTGTAACGTATGTCTATG+AGG + chr7_2:7512382-7512401 Msa1046890:intron 40.0%
GTATTGAAACCTCCCATGTT+CGG + chr7_2:7512804-7512823 Msa1046890:intron 40.0%
! CTATGCTTGCTAGTATCCTT+TGG - chr7_2:7513056-7513075 None:intergenic 40.0%
CTGATGCAGATAAGGGATTT+GGG + chr7_2:7513219-7513238 Msa1046890:CDS 40.0%
TGATGCAGATAAGGGATTTG+GGG + chr7_2:7513220-7513239 Msa1046890:CDS 40.0%
CTCTCCGATTCTTCTTTCTC+CGG + chr7_2:7511250-7511269 Msa1046890:CDS 45.0%
CTGACCGGAGAAAGAAGAAT+CGG - chr7_2:7511257-7511276 None:intergenic 45.0%
GGTAAAAGCAACGGTAAGAG+TGG + chr7_2:7511448-7511467 Msa1046890:intron 45.0%
TTTCTCCGTTCAAACGACGT+TGG - chr7_2:7511487-7511506 None:intergenic 45.0%
GTCGTTTGAACGGAGAAAGA+TGG + chr7_2:7511489-7511508 Msa1046890:CDS 45.0%
TCTTCCATTGCTGTCATTGC+TGG + chr7_2:7511517-7511536 Msa1046890:CDS 45.0%
AGTTCCAGCAATGACAGCAA+TGG - chr7_2:7511524-7511543 None:intergenic 45.0%
!! GTGCCGACTTATTGCACTTA+AGG - chr7_2:7512750-7512769 None:intergenic 45.0%
AAGTAATGACCGAACATGGG+AGG - chr7_2:7512816-7512835 None:intergenic 45.0%
GCTGATGTCCCAAAATCCAT+TGG + chr7_2:7512975-7512994 Msa1046890:intron 45.0%
!! CGAGCATGCCAATGGATTTT+GGG - chr7_2:7512986-7513005 None:intergenic 45.0%
!! TCGAGCATGCCAATGGATTT+TGG - chr7_2:7512987-7513006 None:intergenic 45.0%
TGGGAAAGCTGATGCAGATA+AGG + chr7_2:7513211-7513230 Msa1046890:CDS 45.0%
GGGAAAGCTGATGCAGATAA+GGG + chr7_2:7513212-7513231 Msa1046890:CDS 45.0%
GCTGATGCAGATAAGGGATT+TGG + chr7_2:7513218-7513237 Msa1046890:CDS 45.0%
! ATTTGGGGTTGCATCAGGAT+CGG + chr7_2:7513235-7513254 Msa1046890:CDS 45.0%
CATCAGGATCGGAGAGAAAA+TGG + chr7_2:7513246-7513265 Msa1046890:CDS 45.0%
CTCTCCGATTCTTCTTTCTC+CGG + chr7_2:7511250-7511269 Msa1046890:CDS 45.0%
CTGACCGGAGAAAGAAGAAT+CGG - chr7_2:7511257-7511276 None:intergenic 45.0%
GGTAAAAGCAACGGTAAGAG+TGG + chr7_2:7511448-7511467 Msa1046890:intron 45.0%
TTTCTCCGTTCAAACGACGT+TGG - chr7_2:7511487-7511506 None:intergenic 45.0%
GTCGTTTGAACGGAGAAAGA+TGG + chr7_2:7511489-7511508 Msa1046890:CDS 45.0%
TCTTCCATTGCTGTCATTGC+TGG + chr7_2:7511517-7511536 Msa1046890:CDS 45.0%
AGTTCCAGCAATGACAGCAA+TGG - chr7_2:7511524-7511543 None:intergenic 45.0%
!! GTGCCGACTTATTGCACTTA+AGG - chr7_2:7512750-7512769 None:intergenic 45.0%
AAGTAATGACCGAACATGGG+AGG - chr7_2:7512816-7512835 None:intergenic 45.0%
GCTGATGTCCCAAAATCCAT+TGG + chr7_2:7512975-7512994 Msa1046890:intron 45.0%
!! CGAGCATGCCAATGGATTTT+GGG - chr7_2:7512986-7513005 None:intergenic 45.0%
!! TCGAGCATGCCAATGGATTT+TGG - chr7_2:7512987-7513006 None:intergenic 45.0%
TGGGAAAGCTGATGCAGATA+AGG + chr7_2:7513211-7513230 Msa1046890:CDS 45.0%
GGGAAAGCTGATGCAGATAA+GGG + chr7_2:7513212-7513231 Msa1046890:CDS 45.0%
GCTGATGCAGATAAGGGATT+TGG + chr7_2:7513218-7513237 Msa1046890:CDS 45.0%
! ATTTGGGGTTGCATCAGGAT+CGG + chr7_2:7513235-7513254 Msa1046890:CDS 45.0%
CATCAGGATCGGAGAGAAAA+TGG + chr7_2:7513246-7513265 Msa1046890:CDS 45.0%
TAGGTTCTCGAGCATGCCAA+TGG - chr7_2:7512994-7513013 None:intergenic 50.0%
ACCTAGAGACCTTAGACGCA+AGG + chr7_2:7513009-7513028 Msa1046890:intron 50.0%
! TCCTTGCGTCTAAGGTCTCT+AGG - chr7_2:7513013-7513032 None:intergenic 50.0%
! AAGGGATTTGGGGTTGCATC+AGG + chr7_2:7513230-7513249 Msa1046890:CDS 50.0%
TAGGTTCTCGAGCATGCCAA+TGG - chr7_2:7512994-7513013 None:intergenic 50.0%
ACCTAGAGACCTTAGACGCA+AGG + chr7_2:7513009-7513028 Msa1046890:intron 50.0%
! TCCTTGCGTCTAAGGTCTCT+AGG - chr7_2:7513013-7513032 None:intergenic 50.0%
! AAGGGATTTGGGGTTGCATC+AGG + chr7_2:7513230-7513249 Msa1046890:CDS 50.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 7511010 7513305 7511010 ID=Msa1046890;Name=Msa1046890
chr7_2 mRNA 7511010 7513305 7511010 ID=Msa1046890-mRNA-1;Parent=Msa1046890;Name=Msa1046890-mRNA-1;_AED=0.29;_eAED=0.53;_QI=88|0.5|0.4|1|1|1|5|0|164
chr7_2 exon 7511010 7511157 7511010 ID=Msa1046890-mRNA-1:exon:1890;Parent=Msa1046890-mRNA-1
chr7_2 exon 7511238 7511271 7511238 ID=Msa1046890-mRNA-1:exon:1891;Parent=Msa1046890-mRNA-1
chr7_2 exon 7511449 7511586 7511449 ID=Msa1046890-mRNA-1:exon:1892;Parent=Msa1046890-mRNA-1
chr7_2 exon 7512864 7512946 7512864 ID=Msa1046890-mRNA-1:exon:1893;Parent=Msa1046890-mRNA-1
chr7_2 exon 7513126 7513305 7513126 ID=Msa1046890-mRNA-1:exon:1894;Parent=Msa1046890-mRNA-1
chr7_2 five_prime_UTR 7511010 7511097 7511010 ID=Msa1046890-mRNA-1:five_prime_utr;Parent=Msa1046890-mRNA-1
chr7_2 CDS 7511098 7511157 7511098 ID=Msa1046890-mRNA-1:cds;Parent=Msa1046890-mRNA-1
chr7_2 CDS 7511238 7511271 7511238 ID=Msa1046890-mRNA-1:cds;Parent=Msa1046890-mRNA-1
chr7_2 CDS 7511449 7511586 7511449 ID=Msa1046890-mRNA-1:cds;Parent=Msa1046890-mRNA-1
chr7_2 CDS 7512864 7512946 7512864 ID=Msa1046890-mRNA-1:cds;Parent=Msa1046890-mRNA-1
chr7_2 CDS 7513126 7513305 7513126 ID=Msa1046890-mRNA-1:cds;Parent=Msa1046890-mRNA-1
Gene Sequence

>Msa1046890

ATGGCTTCACTTTTGTCCTTTTCCATTGCTTCTCTTTCTCTACCTAAATCTCAATCTCTGGATCCTGATAATCTCTCCGATTCTTCTTTCTCCGGTAAAAGCAACGGTAAGAGTGGTAGTTGTTGTTTTCCAACGTCGTTTGAACGGAGAAAGATGGTTCTGTCTTCCATTGCTGTCATTGCTGGAACTTTTTGTAAAGGAGGAATTGGTCTTGCATCTGAATTTGCTGACAACTTTGCGAGGGAAATCCTTACAAAATACAAGTTGTTGAAGGTTCTTGATCATGAATCTTCTCCATTATTTGATCCACTTGAGGATGGCATTGGAGAGATGACAACCCTACAAACGCTACGTTTTATTAATTTAGGTATGTATGGAGCTATAGACGTAATTAAAGAGTTGGGAAAGCTGATGCAGATAAGGGATTTGGGGTTGCATCAGGATCGGAGAGAAAATGGAAGCATTCTTCTTCAATCGATAAAATGCAACACTTAG

Protein sequence

>Msa1046890

MASLLSFSIASLSLPKSQSLDPDNLSDSSFSGKSNGKSGSCCFPTSFERRKMVLSSIAVIAGTFCKGGIGLASEFADNFAREILTKYKLLKVLDHESSPLFDPLEDGIGEMTTLQTLRFINLGMYGAIDVIKELGKLMQIRDLGLHQDRRENGSILLQSIKCNT*