Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0482760 | XP_003592158.2 | 97.409 | 579 | 12 | 1 | 1 | 579 | 1 | 576 | 0.0 | 1172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0482760 | sp|Q9FLW9|PKP2_ARATH | 79.447 | 579 | 115 | 1 | 1 | 575 | 1 | 579 | 0.0 | 956 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0482760 | A0A396K762 | 97.409 | 579 | 12 | 1 | 1 | 579 | 1 | 576 | 0.0 | 1172 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011060 | Msa0482760 | -0.820724 | 5.897549e-53 | -8.615850e-47 |
| Msa0011100 | Msa0482760 | -0.812486 | 4.138329e-51 | -8.615850e-47 |
| Msa0016440 | Msa0482760 | 0.850688 | 1.444802e-60 | -8.615850e-47 |
| Msa0030760 | Msa0482760 | -0.801119 | 1.046285e-48 | -8.615850e-47 |
| Msa0048410 | Msa0482760 | -0.847485 | 1.122288e-59 | -8.615850e-47 |
| Msa0060080 | Msa0482760 | -0.839952 | 1.164404e-57 | -8.615850e-47 |
| Msa0081290 | Msa0482760 | -0.806622 | 7.523445e-50 | -8.615850e-47 |
| Msa0081700 | Msa0482760 | -0.818242 | 2.171380e-52 | -8.615850e-47 |
| Msa0089540 | Msa0482760 | 0.834078 | 3.690040e-56 | -8.615850e-47 |
| Msa0094900 | Msa0482760 | -0.804104 | 2.535747e-49 | -8.615850e-47 |
| Msa0099090 | Msa0482760 | -0.810740 | 9.917599e-51 | -8.615850e-47 |
| Msa0104900 | Msa0482760 | -0.819977 | 8.746094e-53 | -8.615850e-47 |
| Msa0132890 | Msa0482760 | 0.964524 | 1.956543e-123 | -8.615850e-47 |
| Msa0188740 | Msa0482760 | 0.807453 | 5.017797e-50 | -8.615850e-47 |
| Msa0192050 | Msa0482760 | 0.811157 | 8.056167e-51 | -8.615850e-47 |
| Msa0195030 | Msa0482760 | 0.816459 | 5.469495e-52 | -8.615850e-47 |
| Msa0225070 | Msa0482760 | -0.804583 | 2.015213e-49 | -8.615850e-47 |
| Msa0227970 | Msa0482760 | -0.801160 | 1.026573e-48 | -8.615850e-47 |
| Msa0236690 | Msa0482760 | -0.805758 | 1.143792e-49 | -8.615850e-47 |
| Msa0237180 | Msa0482760 | 0.818711 | 1.699476e-52 | -8.615850e-47 |
| Msa0364910 | Msa0482760 | -0.804405 | 2.194241e-49 | -8.615850e-47 |
| Msa0370350 | Msa0482760 | -0.808792 | 2.602510e-50 | -8.615850e-47 |
| Msa0380590 | Msa0482760 | 0.800884 | 1.169041e-48 | -8.615850e-47 |
| Msa0384330 | Msa0482760 | -0.812940 | 3.291969e-51 | -8.615850e-47 |
| Msa0385030 | Msa0482760 | 0.801683 | 8.020798e-49 | -8.615850e-47 |
| Msa0432260 | Msa0482760 | -0.837946 | 3.850606e-57 | -8.615850e-47 |
| Msa0436830 | Msa0482760 | -0.828118 | 1.073720e-54 | -8.615850e-47 |
| Msa0452490 | Msa0482760 | -0.822468 | 2.331403e-53 | -8.615850e-47 |
| Msa0476730 | Msa0482760 | -0.802234 | 6.180544e-49 | -8.615850e-47 |
| Msa0479480 | Msa0482760 | 0.805434 | 1.337631e-49 | -8.615850e-47 |
| Msa0258280 | Msa0482760 | -0.816420 | 5.580677e-52 | -8.615850e-47 |
| Msa0266380 | Msa0482760 | -0.806428 | 8.267501e-50 | -8.615850e-47 |
| Msa0269660 | Msa0482760 | -0.802245 | 6.147432e-49 | -8.615850e-47 |
| Msa0274940 | Msa0482760 | 0.805263 | 1.452651e-49 | -8.615850e-47 |
| Msa0290800 | Msa0482760 | 0.846822 | 1.705993e-59 | -8.615850e-47 |
| Msa0297320 | Msa0482760 | -0.808160 | 3.550748e-50 | -8.615850e-47 |
| Msa0304350 | Msa0482760 | -0.812821 | 3.494933e-51 | -8.615850e-47 |
| Msa0305910 | Msa0482760 | -0.811651 | 6.292989e-51 | -8.615850e-47 |
| Msa0307430 | Msa0482760 | 0.803268 | 3.780790e-49 | -8.615850e-47 |
| Msa0315660 | Msa0482760 | 0.829802 | 4.198157e-55 | -8.615850e-47 |
| Msa0317300 | Msa0482760 | 0.811783 | 5.890510e-51 | -8.615850e-47 |
| Msa0328870 | Msa0482760 | 0.847871 | 8.787092e-60 | -8.615850e-47 |
| Msa0330770 | Msa0482760 | -0.813106 | 3.027358e-51 | -8.615850e-47 |
| Msa0340830 | Msa0482760 | -0.809315 | 2.011048e-50 | -8.615850e-47 |
| Msa0340870 | Msa0482760 | -0.805750 | 1.148258e-49 | -8.615850e-47 |
| Msa0341860 | Msa0482760 | -0.810495 | 1.120439e-50 | -8.615850e-47 |
| Msa0482760 | Msa0500420 | 0.803949 | 2.730470e-49 | -8.615850e-47 |
| Msa0482760 | Msa0522730 | -0.809329 | 1.996908e-50 | -8.615850e-47 |
| Msa0482760 | Msa0538050 | -0.812754 | 3.615792e-51 | -8.615850e-47 |
| Msa0482760 | Msa0540160 | -0.826627 | 2.445487e-54 | -8.615850e-47 |
| Msa0482760 | Msa0559440 | -0.802442 | 5.600561e-49 | -8.615850e-47 |
| Msa0482760 | Msa0566460 | 0.805392 | 1.364796e-49 | -8.615850e-47 |
| Msa0482760 | Msa0595530 | 0.800734 | 1.254370e-48 | -8.615850e-47 |
| Msa0482760 | Msa0632040 | -0.800107 | 1.683383e-48 | -8.615850e-47 |
| Msa0482760 | Msa0658120 | 0.806173 | 9.354145e-50 | -8.615850e-47 |
| Msa0482760 | Msa0659020 | -0.812864 | 3.421444e-51 | -8.615850e-47 |
| Msa0482760 | Msa0661040 | -0.804081 | 2.562995e-49 | -8.615850e-47 |
| Msa0482760 | Msa0702970 | 0.801944 | 7.089041e-49 | -8.615850e-47 |
| Msa0482760 | Msa0721650 | -0.808036 | 3.772261e-50 | -8.615850e-47 |
| Msa0482760 | Msa0733240 | -0.813547 | 2.421564e-51 | -8.615850e-47 |
| Msa0482760 | Msa0761830 | 0.829075 | 6.306759e-55 | -8.615850e-47 |
| Msa0482760 | Msa0774360 | -0.812447 | 4.220976e-51 | -8.615850e-47 |
| Msa0482760 | Msa0779830 | -0.813982 | 1.942667e-51 | -8.615850e-47 |
| Msa0482760 | Msa0791700 | -0.808340 | 3.249435e-50 | -8.615850e-47 |
| Msa0482760 | Msa0804170 | 0.800319 | 1.524150e-48 | -8.615850e-47 |
| Msa0482760 | Msa0812020 | -0.803036 | 4.222108e-49 | -8.615850e-47 |
| Msa0482760 | Msa0827560 | -0.806654 | 7.404631e-50 | -8.615850e-47 |
| Msa0482760 | Msa0852090 | -0.823362 | 1.442597e-53 | -8.615850e-47 |
| Msa0482760 | Msa0862750 | -0.803857 | 2.853267e-49 | -8.615850e-47 |
| Msa0482760 | Msa0870220 | -0.813228 | 2.846965e-51 | -8.615850e-47 |
| Msa0482760 | Msa0871420 | 0.809948 | 1.469973e-50 | -8.615850e-47 |
| Msa0482760 | Msa0880050 | 0.833670 | 4.667730e-56 | -8.615850e-47 |
| Msa0482760 | Msa0898830 | -0.825077 | 5.707195e-54 | -8.615850e-47 |
| Msa0482760 | Msa0903460 | -0.818626 | 1.776458e-52 | -8.615850e-47 |
| Msa0482760 | Msa0906100 | -0.826896 | 2.109094e-54 | -8.615850e-47 |
| Msa0482760 | Msa0935930 | -0.828876 | 7.044899e-55 | -8.615850e-47 |
| Msa0482760 | Msa0967900 | -0.805598 | 1.235591e-49 | -8.615850e-47 |
| Msa0482760 | Msa0972930 | -0.813883 | 2.043056e-51 | -8.615850e-47 |
| Msa0482760 | Msa1026710 | 0.845504 | 3.898132e-59 | -8.615850e-47 |
| Msa0482760 | Msa1041830 | 0.816661 | 4.929540e-52 | -8.615850e-47 |
| Msa0482760 | Msa1078210 | -0.807182 | 5.726761e-50 | -8.615850e-47 |
| Msa0482760 | Msa1093190 | -0.800674 | 1.289893e-48 | -8.615850e-47 |
| Msa0482760 | Msa1123440 | -0.802153 | 6.421142e-49 | -8.615850e-47 |
| Msa0482760 | Msa1124980 | 0.819487 | 1.131852e-52 | -8.615850e-47 |
| Msa0482760 | Msa1145930 | -0.817630 | 2.984441e-52 | -8.615850e-47 |
| Msa0482760 | Msa1152860 | 0.800574 | 1.352227e-48 | -8.615850e-47 |
| Msa0482760 | Msa1167360 | 0.824600 | 7.391166e-54 | -8.615850e-47 |
| Msa0482760 | Msa1186260 | 0.819132 | 1.363871e-52 | -8.615850e-47 |
| Msa0482760 | Msa1214960 | 0.803729 | 3.034197e-49 | -8.615850e-47 |
| Msa0482760 | Msa1260520 | -0.815076 | 1.112334e-51 | -8.615850e-47 |
| Msa0482760 | Msa1347610 | 0.847616 | 1.033328e-59 | -8.615850e-47 |
| Msa0482760 | Msa1369220 | -0.801837 | 7.457361e-49 | -8.615850e-47 |
| Msa0482760 | Msa1382100 | -0.804141 | 2.491294e-49 | -8.615850e-47 |
| Msa0482760 | Msa1384410 | -0.804691 | 1.913014e-49 | -8.615850e-47 |
| Msa0482760 | Msa1395050 | 0.815534 | 8.799828e-52 | -8.615850e-47 |
| Msa0482760 | Msa1412740 | -0.805346 | 1.395557e-49 | -8.615850e-47 |
| Msa0482760 | Msa1422150 | -0.812391 | 4.341114e-51 | -8.615850e-47 |
| Msa0482760 | Msa1423050 | 0.831710 | 1.430493e-55 | -8.615850e-47 |
| Msa0482760 | Msa1426690 | -0.812314 | 4.511251e-51 | -8.615850e-47 |
| Msa0482760 | Msa1433060 | -0.812762 | 3.602045e-51 | -8.615850e-47 |
| Msa0482760 | Msa1464470 | -0.804786 | 1.827287e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0482760 | MtrunA17_Chr1g0202291 | 97.409 | 579 | 12 | 1 | 1 | 579 | 1 | 576 | 0.0 | 1172 |
| Msa0482760 | MtrunA17_Chr6g0463101 | 84.922 | 577 | 82 | 3 | 1 | 575 | 1 | 574 | 0.0 | 1010 |
| Msa0482760 | MtrunA17_Chr5g0400361 | 74.947 | 471 | 118 | 0 | 105 | 575 | 76 | 546 | 0.0 | 742 |
| Msa0482760 | MtrunA17_Chr1g0188101 | 45.912 | 477 | 236 | 7 | 106 | 561 | 89 | 564 | 5.34e-128 | 387 |
| Msa0482760 | MtrunA17_Chr1g0206791 | 41.273 | 487 | 267 | 9 | 106 | 575 | 16 | 500 | 3.54e-115 | 352 |
| Msa0482760 | MtrunA17_Chr6g0448901 | 37.083 | 480 | 259 | 12 | 107 | 551 | 21 | 492 | 1.20e-85 | 275 |
| Msa0482760 | MtrunA17_Chr4g0043311 | 36.458 | 480 | 262 | 11 | 107 | 551 | 8 | 479 | 1.85e-85 | 274 |
| Msa0482760 | MtrunA17_Chr4g0043301 | 34.702 | 487 | 269 | 12 | 107 | 555 | 11 | 486 | 3.56e-82 | 266 |
| Msa0482760 | MtrunA17_Chr7g0263711 | 35.197 | 483 | 264 | 12 | 107 | 551 | 11 | 482 | 5.15e-82 | 265 |
| Msa0482760 | MtrunA17_Chr1g0197911 | 27.572 | 486 | 310 | 15 | 108 | 555 | 30 | 511 | 6.69e-44 | 164 |
| Msa0482760 | MtrunA17_Chr7g0265591 | 26.749 | 486 | 315 | 13 | 108 | 555 | 30 | 512 | 5.31e-43 | 161 |
| Msa0482760 | MtrunA17_Chr1g0179541 | 28.362 | 409 | 248 | 11 | 108 | 494 | 30 | 415 | 8.52e-41 | 155 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0482760 | AT5G52920.1 | 79.447 | 579 | 115 | 1 | 1 | 575 | 1 | 579 | 0.0 | 956 |
| Msa0482760 | AT1G32440.1 | 77.070 | 471 | 107 | 1 | 105 | 575 | 98 | 567 | 0.0 | 762 |
| Msa0482760 | AT3G22960.1 | 47.158 | 475 | 231 | 7 | 106 | 561 | 117 | 590 | 1.18e-130 | 395 |
| Msa0482760 | AT3G55650.1 | 34.765 | 489 | 284 | 9 | 96 | 551 | 6 | 492 | 2.69e-86 | 277 |
| Msa0482760 | AT3G25960.1 | 35.565 | 478 | 282 | 9 | 96 | 551 | 6 | 479 | 1.20e-85 | 275 |
| Msa0482760 | AT5G56350.1 | 35.341 | 498 | 274 | 14 | 105 | 564 | 7 | 494 | 7.40e-84 | 270 |
| Msa0482760 | AT5G63680.3 | 37.342 | 474 | 266 | 11 | 107 | 551 | 21 | 492 | 1.39e-83 | 270 |
| Msa0482760 | AT5G63680.1 | 37.342 | 474 | 266 | 11 | 107 | 551 | 21 | 492 | 1.39e-83 | 270 |
| Msa0482760 | AT5G63680.2 | 37.342 | 474 | 266 | 11 | 107 | 551 | 21 | 492 | 1.39e-83 | 270 |
| Msa0482760 | AT3G04050.1 | 34.511 | 481 | 280 | 10 | 104 | 551 | 14 | 492 | 1.90e-83 | 270 |
| Msa0482760 | AT4G26390.1 | 35.404 | 483 | 280 | 10 | 105 | 557 | 6 | 486 | 1.03e-82 | 268 |
| Msa0482760 | AT5G08570.1 | 36.842 | 475 | 267 | 12 | 107 | 551 | 21 | 492 | 1.81e-82 | 267 |
| Msa0482760 | AT5G08570.2 | 36.842 | 475 | 267 | 12 | 107 | 551 | 21 | 492 | 1.81e-82 | 267 |
| Msa0482760 | AT5G08570.3 | 36.842 | 475 | 267 | 12 | 107 | 551 | 21 | 492 | 1.81e-82 | 267 |
| Msa0482760 | AT3G55810.1 | 32.515 | 489 | 277 | 10 | 96 | 551 | 6 | 474 | 1.02e-71 | 238 |
| Msa0482760 | AT2G36580.1 | 28.279 | 488 | 305 | 14 | 108 | 555 | 30 | 512 | 1.84e-46 | 171 |
| Msa0482760 | AT3G52990.1 | 27.869 | 488 | 307 | 14 | 108 | 555 | 30 | 512 | 1.05e-44 | 166 |
| Msa0482760 | AT3G52990.2 | 27.155 | 464 | 293 | 14 | 132 | 555 | 1 | 459 | 9.40e-39 | 149 |
| Msa0482760 | AT3G49160.1 | 29.258 | 229 | 144 | 6 | 215 | 432 | 473 | 694 | 7.49e-19 | 90.9 |
| Msa0482760 | AT3G49160.3 | 29.258 | 229 | 144 | 6 | 215 | 432 | 385 | 606 | 8.25e-19 | 90.9 |
Find 192 sgRNAs with CRISPR-Local
Find 361 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACAAGTTGGTAATGTTTC+TGG | 0.172900 | 3_3:+90179839 | Msa0482760:CDS |
| TCCGATGGAATAATGCTTTC+TGG | 0.190585 | 3_3:+90181988 | Msa0482760:CDS |
| GATTGGGATGACATCAAATT+TGG | 0.216798 | 3_3:+90181197 | Msa0482760:CDS |
| AGACTTAGGTGGTAAGATTT+TGG | 0.227137 | 3_3:-90179538 | None:intergenic |
| AAAGAGGATGTGTACTTCTA+AGG | 0.256862 | 3_3:-90183634 | None:intergenic |
| TGATACCAAATCTTGCATTT+TGG | 0.260175 | 3_3:+90183666 | Msa0482760:three_prime_UTR |
| ACTAAGATTGTTTGTACTAT+TGG | 0.260506 | 3_3:+90179896 | Msa0482760:CDS |
| CTGATCAGTAAAAGCAAATA+TGG | 0.278721 | 3_3:-90182589 | None:intergenic |
| TTGAATACTTGGCCAATATT+AGG | 0.283361 | 3_3:-90182300 | None:intergenic |
| ATTACTTTCGCAGCTTTAAT+TGG | 0.294022 | 3_3:-90182225 | None:intergenic |
| AGAGAGGGAGGGAGGGAGGG+AGG | 0.297982 | 3_3:-90179394 | None:intergenic |
| AAGAAACGGCGGAGACAAAT+AGG | 0.310420 | 3_3:-90179328 | None:intergenic |
| TCAGAGAATTCCATGTAAAT+AGG | 0.315231 | 3_3:-90183032 | None:intergenic |
| CCATTCCACTCACAATATTC+AGG | 0.322453 | 3_3:+90183558 | Msa0482760:CDS |
| AATAACCAAAATGCAAGATT+TGG | 0.323096 | 3_3:-90183671 | None:intergenic |
| ATCGATAACTTCGCATTTCA+CGG | 0.329487 | 3_3:-90180947 | None:intergenic |
| TCATAAGAAAGTTATTGATT+TGG | 0.344192 | 3_3:+90180012 | Msa0482760:CDS |
| ATTTCCTTTGTATTAGTAGA+AGG | 0.347373 | 3_3:-90179920 | None:intergenic |
| AAAAGCCTTGGATTTGTTGC+AGG | 0.348377 | 3_3:+90183076 | Msa0482760:CDS |
| CTAATACAAAGGAAATGATT+TGG | 0.354416 | 3_3:+90179927 | Msa0482760:CDS |
| AATATAACAGTCCTGGGATA+TGG | 0.356612 | 3_3:-90183871 | None:intergenic |
| TGAGGACTTTCTTGCATTGA+TGG | 0.364054 | 3_3:-90179595 | None:intergenic |
| CAATGCAGGAAGAGATAATA+AGG | 0.366508 | 3_3:+90181845 | Msa0482760:intron |
| GAATCATCTTCGGGTGATAC+AGG | 0.367392 | 3_3:-90179633 | None:intergenic |
| AGAGAGAGAGGGAGGGAGGG+AGG | 0.370820 | 3_3:-90179398 | None:intergenic |
| AAAGTACAGTGGTACACTTT+TGG | 0.377015 | 3_3:+90179207 | Msa0482760:five_prime_UTR |
| TGGTGCCTGCAGGTCGATAA+TGG | 0.377025 | 3_3:-90182569 | None:intergenic |
| CTTCACTAGATCGGGTTTCA+TGG | 0.377434 | 3_3:+90182533 | Msa0482760:CDS |
| AAAAGCGGAACCTCCTCAAT+AGG | 0.380743 | 3_3:-90181705 | None:intergenic |
| CGGAGACATTTGAATGTTAG+AGG | 0.383246 | 3_3:+90180988 | Msa0482760:CDS |
| GGATAGTAAAAGTGAATTCC+TGG | 0.383564 | 3_3:-90180257 | None:intergenic |
| CATACTTTCCAGCATATTTG+TGG | 0.385316 | 3_3:-90181902 | None:intergenic |
| CATATGTTAGTTCATGTCAT+TGG | 0.385820 | 3_3:+90183810 | Msa0482760:three_prime_UTR |
| TCCCTCTTACGACCCACTTC+AGG | 0.386910 | 3_3:+90179465 | Msa0482760:CDS |
| ACAAACCTTTGAATCATCTT+CGG | 0.386930 | 3_3:-90179643 | None:intergenic |
| CTATGCCGTTTCTTTCGTTA+AGG | 0.387859 | 3_3:+90181241 | Msa0482760:CDS |
| GAGAGAGAGGGAGGGAGGGA+GGG | 0.400317 | 3_3:-90179397 | None:intergenic |
| ACCTCTGCTCTGGTTGGCGT+GGG | 0.401155 | 3_3:-90181934 | None:intergenic |
| ATTTGGAAACTTGCTGAGGC+TGG | 0.403880 | 3_3:+90179944 | Msa0482760:CDS |
| GGAGGGAGGGAGGTGAAGAT+TGG | 0.404082 | 3_3:-90179384 | None:intergenic |
| AACTGTTGTCTTCACTAGAT+CGG | 0.404661 | 3_3:+90182524 | Msa0482760:CDS |
| TGTATAGATTGAGGCGGAGT+TGG | 0.408751 | 3_3:+90179799 | Msa0482760:intron |
| ACTGTTGTCTTCACTAGATC+GGG | 0.416610 | 3_3:+90182525 | Msa0482760:CDS |
| CAAACCTTTGAATCATCTTC+GGG | 0.417561 | 3_3:-90179642 | None:intergenic |
| GGTTCAGTATTTAGTTAGAA+TGG | 0.418276 | 3_3:+90183781 | Msa0482760:three_prime_UTR |
| CATTAACGTTGTTGGTTGGT+TGG | 0.424605 | 3_3:+90179252 | Msa0482760:five_prime_UTR |
| GGGCAGATGCCACCTAATAT+TGG | 0.424869 | 3_3:+90182288 | Msa0482760:CDS |
| AAAGTGGAAGGCAACCTATA+TGG | 0.425350 | 3_3:+90183530 | Msa0482760:CDS |
| CAGAGGTTGGCTTTGTATCA+AGG | 0.427960 | 3_3:+90183002 | Msa0482760:CDS |
| GAGGTTCTGAAGCAAAGCTT+AGG | 0.428198 | 3_3:-90179570 | None:intergenic |
| TTTCACGGAATCCGCTGTCT+TGG | 0.428216 | 3_3:-90180932 | None:intergenic |
| AAGTTTAGACCTTGAATACT+TGG | 0.428867 | 3_3:-90182311 | None:intergenic |
| ATTTGTTGCAGAAAAGGATT+GGG | 0.432529 | 3_3:+90181181 | Msa0482760:intron |
| TTAAGTCGCATTAACGTTGT+TGG | 0.438329 | 3_3:+90179244 | Msa0482760:five_prime_UTR |
| TTAGTCTTTCTTCTAACCAT+TGG | 0.438719 | 3_3:-90179878 | None:intergenic |
| ATGTCTCAGGTTGCAACCAC+TGG | 0.442324 | 3_3:+90179429 | Msa0482760:CDS |
| AAGAAAATAATGATGAAAAC+AGG | 0.450847 | 3_3:-90183742 | None:intergenic |
| TGTTTCCATATGCAGAAGAA+TGG | 0.453443 | 3_3:+90183472 | Msa0482760:intron |
| AATTTGTTGCAGAAAAGGAT+TGG | 0.453541 | 3_3:+90181180 | Msa0482760:intron |
| AACGTTGTTGGTTGGTTGGT+TGG | 0.456115 | 3_3:+90179256 | Msa0482760:five_prime_UTR |
| TTGGTGAAGGGGATCGAAGA+AGG | 0.456711 | 3_3:-90179365 | None:intergenic |
| GTTGCCTTCCACTTTGTACA+AGG | 0.457075 | 3_3:-90183522 | None:intergenic |
| ACATTGTAGTAGAGAGAGAG+AGG | 0.461297 | 3_3:-90179410 | None:intergenic |
| TCAATTATTACTGCATCTGA+TGG | 0.461675 | 3_3:+90181474 | Msa0482760:CDS |
| CAAGCTAAATATAACAGTCC+TGG | 0.461891 | 3_3:-90183878 | None:intergenic |
| TCTCTCTACTACAATGTCTC+AGG | 0.466077 | 3_3:+90179416 | Msa0482760:exon |
| AATTTGTGGCGGCTACTGTT+CGG | 0.466689 | 3_3:-90183582 | None:intergenic |
| TAATATTGGCCAAGTATTCA+AGG | 0.466771 | 3_3:+90182302 | Msa0482760:CDS |
| TTTGTCAATGATGTCGAAGA+AGG | 0.468350 | 3_3:+90180327 | Msa0482760:CDS |
| AGGTGGTATGATGTCCTTCT+TGG | 0.469108 | 3_3:+90180903 | Msa0482760:intron |
| GTAATAATTGAATGCAAGTT+CGG | 0.469193 | 3_3:-90181462 | None:intergenic |
| CATATTTGTGGCTACAATAA+CGG | 0.474034 | 3_3:-90181890 | None:intergenic |
| ATGGTTGCAAGAGGAGATCT+TGG | 0.484762 | 3_3:+90181672 | Msa0482760:CDS |
| AGGTTCTGAAGCAAAGCTTA+GGG | 0.485710 | 3_3:-90179569 | None:intergenic |
| TAATGCACACCGTAGCATTA+CGG | 0.486804 | 3_3:+90182244 | Msa0482760:CDS |
| GGGGACATGCTTCTTGTTGA+CGG | 0.487278 | 3_3:+90180348 | Msa0482760:CDS |
| TCCAAGGGTATTAGACATCA+TGG | 0.487729 | 3_3:-90182496 | None:intergenic |
| AGAAACGGCGGAGACAAATA+GGG | 0.487777 | 3_3:-90179327 | None:intergenic |
| AGAGACATTCACAAAAGCCT+TGG | 0.488109 | 3_3:+90183064 | Msa0482760:CDS |
| TCGTAAGAGGGAGGTTTGAA+TGG | 0.491999 | 3_3:-90179454 | None:intergenic |
| AAAGTCTAACCAGTGATTGA+AGG | 0.493534 | 3_3:-90181027 | None:intergenic |
| CAATTATTACTGCATCTGAT+GGG | 0.495858 | 3_3:+90181475 | Msa0482760:CDS |
| TACCTCTGCTCTGGTTGGCG+TGG | 0.497055 | 3_3:-90181935 | None:intergenic |
| AAAGCGGAACCTCCTCAATA+GGG | 0.498685 | 3_3:-90181704 | None:intergenic |
| GAGGACTTTCTTGCATTGAT+GGG | 0.499803 | 3_3:-90179594 | None:intergenic |
| AGAGGTTGAAACTTAATTTG+TGG | 0.499961 | 3_3:-90183596 | None:intergenic |
| AAGAATGGAATGGTTAAAGA+AGG | 0.500527 | 3_3:+90183487 | Msa0482760:CDS |
| TCCAGAAAGCATTATTCCAT+CGG | 0.500745 | 3_3:-90181989 | None:intergenic |
| TATTGTAGCCACAAATATGC+TGG | 0.504931 | 3_3:+90181894 | Msa0482760:CDS |
| GGGTCCTGAGGTTAGGAGTG+GGG | 0.506757 | 3_3:+90180203 | Msa0482760:intron |
| AAGAGGATGTGTACTTCTAA+GGG | 0.509932 | 3_3:-90183633 | None:intergenic |
| GATCGAAGAAGGGAATGAGT+TGG | 0.512474 | 3_3:-90179354 | None:intergenic |
| ACCATGATGTCTAATACCCT+TGG | 0.514111 | 3_3:+90182495 | Msa0482760:CDS |
| TTTACTATCCAGAGTGGCGT+TGG | 0.515163 | 3_3:+90180270 | Msa0482760:CDS |
| AGGGAGGTGAAGATTGGTGA+AGG | 0.515494 | 3_3:-90179378 | None:intergenic |
| ATCCTGAAGTGGGTCGTAAG+AGG | 0.515645 | 3_3:-90179467 | None:intergenic |
| GAAAGTTATTGATTTGGTCA+AGG | 0.519341 | 3_3:+90180018 | Msa0482760:CDS |
| GCAACACTGCCTTCAATCAC+TGG | 0.520688 | 3_3:+90181018 | Msa0482760:CDS |
| CAGCAGTTCCAACGCCACTC+TGG | 0.522112 | 3_3:-90180278 | None:intergenic |
| TTGGTGGCCATGCAGGAAAA+GGG | 0.523975 | 3_3:+90182974 | Msa0482760:intron |
| TGCAATTATGCTTGACACCA+AGG | 0.524078 | 3_3:+90180072 | Msa0482760:CDS |
| TCCTGAAGTGGGTCGTAAGA+GGG | 0.525049 | 3_3:-90179466 | None:intergenic |
| AATATCAGATACCTCTGCTC+TGG | 0.526914 | 3_3:-90181944 | None:intergenic |
| TGGTGAAGGGGATCGAAGAA+GGG | 0.527445 | 3_3:-90179364 | None:intergenic |
| GTGGAATGGAACCTCCATAT+AGG | 0.530502 | 3_3:-90183544 | None:intergenic |
| TGCATCCTTAACGAAAGAAA+CGG | 0.532070 | 3_3:-90181246 | None:intergenic |
| GAAGTAGCCCTTGTACAAAG+TGG | 0.532110 | 3_3:+90183514 | Msa0482760:CDS |
| GTCGCATTAACGTTGTTGGT+TGG | 0.534858 | 3_3:+90179248 | Msa0482760:five_prime_UTR |
| AGGGTCCTGAGGTTAGGAGT+GGG | 0.537150 | 3_3:+90180202 | Msa0482760:intron |
| TTGAGCCATTATCGACCTGC+AGG | 0.540869 | 3_3:+90182564 | Msa0482760:CDS |
| AATAAGGATATGCCGTAGCA+TGG | 0.541078 | 3_3:+90181861 | Msa0482760:CDS |
| AAGCTAAATATAACAGTCCT+GGG | 0.541339 | 3_3:-90183877 | None:intergenic |
| AGGTGTCTGTCCTATTTACA+TGG | 0.542712 | 3_3:+90183022 | Msa0482760:CDS |
| AAAGCAAATATGGTGCCTGC+AGG | 0.543058 | 3_3:-90182579 | None:intergenic |
| TTAGGTGGCATCTGCCCACT+TGG | 0.546105 | 3_3:-90182282 | None:intergenic |
| TTGTCAATGATGTCGAAGAA+GGG | 0.547334 | 3_3:+90180328 | Msa0482760:CDS |
| TAGGGTCCTGAGGTTAGGAG+TGG | 0.547849 | 3_3:+90180201 | Msa0482760:intron |
| GAAAAGGGTACAACAGAGGT+TGG | 0.552967 | 3_3:+90182989 | Msa0482760:CDS |
| TCACATGATAATAGTACTCA+AGG | 0.556126 | 3_3:-90183924 | None:intergenic |
| GGGAGGTGAAGATTGGTGAA+GGG | 0.558390 | 3_3:-90179377 | None:intergenic |
| GGAGGTGAAGATTGGTGAAG+GGG | 0.561489 | 3_3:-90179376 | None:intergenic |
| AGGACTTTCTTGCATTGATG+GGG | 0.562047 | 3_3:-90179593 | None:intergenic |
| ATTGCAATTGCTGTTCGAGA+AGG | 0.562992 | 3_3:+90181964 | Msa0482760:CDS |
| GGCTTCTGTCCGTAATGCTA+CGG | 0.565887 | 3_3:-90182253 | None:intergenic |
| GGAAGAGGGTGGACAAGACA+AGG | 0.566235 | 3_3:-90179306 | None:intergenic |
| TGGTCCTTCTACTAATACAA+AGG | 0.568271 | 3_3:+90179916 | Msa0482760:CDS |
| AAATCCCCACTCCTAACCTC+AGG | 0.568605 | 3_3:-90180207 | None:intergenic |
| AGACAACAGTTGAAGTTCCA+AGG | 0.570123 | 3_3:-90182512 | None:intergenic |
| CATTGTAGTAGAGAGAGAGA+GGG | 0.571627 | 3_3:-90179409 | None:intergenic |
| TATTAGACATCATGGTTGCA+TGG | 0.573097 | 3_3:-90182488 | None:intergenic |
| TAACGGCCTTTCCCATGCTA+CGG | 0.580211 | 3_3:-90181873 | None:intergenic |
| TTGCCTTCCACTTTGTACAA+GGG | 0.582360 | 3_3:-90183521 | None:intergenic |
| GGCGGAGACAAATAGGGAAG+AGG | 0.583009 | 3_3:-90179321 | None:intergenic |
| AGGGACAACTTCAGCAGATG+AGG | 0.586458 | 3_3:-90179613 | None:intergenic |
| TGGTGCAGAACTCCCTATTG+AGG | 0.586537 | 3_3:+90181692 | Msa0482760:CDS |
| GAATGAGTTGGAGAAAGAAA+CGG | 0.586920 | 3_3:-90179342 | None:intergenic |
| AATCATCTTCGGGTGATACA+GGG | 0.589652 | 3_3:-90179632 | None:intergenic |
| GTAATGTTTCTGGTGGAATG+TGG | 0.589846 | 3_3:+90179849 | Msa0482760:CDS |
| CTTTCTGGAGAAACTGCACA+TGG | 0.592158 | 3_3:+90182003 | Msa0482760:CDS |
| ATCACCCGAAGATGATTCAA+AGG | 0.592363 | 3_3:+90179638 | Msa0482760:CDS |
| TCAGATACCTCTGCTCTGGT+TGG | 0.594373 | 3_3:-90181940 | None:intergenic |
| AATACTTGGCCAATATTAGG+TGG | 0.594417 | 3_3:-90182297 | None:intergenic |
| CCATATGCAGAAGAATGGAA+TGG | 0.594857 | 3_3:+90183477 | Msa0482760:intron |
| ATCACATTCAGCCATATCCC+AGG | 0.596917 | 3_3:+90183860 | Msa0482760:three_prime_UTR |
| CAAGTTGGTAATGTTTCTGG+TGG | 0.597270 | 3_3:+90179842 | Msa0482760:CDS |
| GCGGAGACAAATAGGGAAGA+GGG | 0.597719 | 3_3:-90179320 | None:intergenic |
| CTTCAGGATCTACACATGAC+AGG | 0.598783 | 3_3:+90179481 | Msa0482760:CDS |
| ATAAGGATATGCCGTAGCAT+GGG | 0.599769 | 3_3:+90181862 | Msa0482760:CDS |
| GTTCTGAAGCAAAGCTTAGG+GGG | 0.600124 | 3_3:-90179567 | None:intergenic |
| GACAACAGTTGAAGTTCCAA+GGG | 0.600278 | 3_3:-90182511 | None:intergenic |
| GTACTTCTAAGGGTATATGT+AGG | 0.602228 | 3_3:-90183623 | None:intergenic |
| AATTATTACTGCATCTGATG+GGG | 0.603859 | 3_3:+90181476 | Msa0482760:CDS |
| AATTACCTGCAACAAATCCA+AGG | 0.604246 | 3_3:-90183081 | None:intergenic |
| AAAAGATGGAGGCTTTAACA+AGG | 0.604406 | 3_3:-90179511 | None:intergenic |
| TAGCCCTTGTACAAAGTGGA+AGG | 0.605384 | 3_3:+90183518 | Msa0482760:CDS |
| TGTCAATGATGTCGAAGAAG+GGG | 0.607214 | 3_3:+90180329 | Msa0482760:CDS |
| ATGCAAACATCTCGCTCATG+TGG | 0.611672 | 3_3:-90182464 | None:intergenic |
| GGTTCTGAAGCAAAGCTTAG+GGG | 0.614196 | 3_3:-90179568 | None:intergenic |
| CCTGAATATTGTGAGTGGAA+TGG | 0.615998 | 3_3:-90183558 | None:intergenic |
| AGGGTATATGTAGGCCTCAG+AGG | 0.616148 | 3_3:-90183614 | None:intergenic |
| GCTGTTCGAGAAGGTTCCGA+TGG | 0.616692 | 3_3:+90181973 | Msa0482760:CDS |
| CAGAAGCCGCTTTACCAAGT+GGG | 0.616792 | 3_3:+90182268 | Msa0482760:CDS |
| TTGTGGTGTATAGATTGAGG+CGG | 0.618279 | 3_3:+90179793 | Msa0482760:intron |
| TGCAGAACTCCCTATTGAGG+AGG | 0.618747 | 3_3:+90181695 | Msa0482760:CDS |
| GTCCAGGCTATGGTTGCAAG+AGG | 0.621810 | 3_3:+90181663 | Msa0482760:intron |
| ATGGAGGAGAGCTCGCGTCA+CGG | 0.623292 | 3_3:+90180968 | Msa0482760:CDS |
| GGACTTTCTTGCATTGATGG+GGG | 0.628665 | 3_3:-90179592 | None:intergenic |
| CATCTGCCCACTTGGTAAAG+CGG | 0.628930 | 3_3:-90182274 | None:intergenic |
| TGTCTTGGACTTAACCAAGA+AGG | 0.629593 | 3_3:-90180917 | None:intergenic |
| GTGAAATGCGAAGTTATCGA+TGG | 0.631985 | 3_3:+90180949 | Msa0482760:CDS |
| GGTTGAAACTTAATTTGTGG+CGG | 0.634449 | 3_3:-90183593 | None:intergenic |
| ATGCAAGTTCGGTATAGAGT+CGG | 0.635337 | 3_3:-90181451 | None:intergenic |
| GGAGGTTTGAATGGATCCAG+TGG | 0.635775 | 3_3:-90179445 | None:intergenic |
| CCCCACGCCAACCAGAGCAG+AGG | 0.642045 | 3_3:+90181933 | Msa0482760:CDS |
| GATATGCCGTAGCATGGGAA+AGG | 0.644726 | 3_3:+90181867 | Msa0482760:CDS |
| CCTCTGCTCTGGTTGGCGTG+GGG | 0.646850 | 3_3:-90181933 | None:intergenic |
| ACAGAAGCCGCTTTACCAAG+TGG | 0.649319 | 3_3:+90182267 | Msa0482760:CDS |
| GCTCGTATGAATATGTCTCA+TGG | 0.651990 | 3_3:+90179977 | Msa0482760:CDS |
| AAATGCGAAGTTATCGATGG+AGG | 0.652757 | 3_3:+90180952 | Msa0482760:CDS |
| CTTGGTTAAGTCCAAGACAG+CGG | 0.652841 | 3_3:+90180921 | Msa0482760:CDS |
| GTCATGTGTAGATCCTGAAG+TGG | 0.656544 | 3_3:-90179478 | None:intergenic |
| AAATTAAGTTTCAACCTCTG+AGG | 0.664431 | 3_3:+90183600 | Msa0482760:exon |
| TGGAATGTGGTCTAAGCCAA+TGG | 0.668652 | 3_3:+90179862 | Msa0482760:CDS |
| TGAAGTGGGTCGTAAGAGGG+AGG | 0.672720 | 3_3:-90179463 | None:intergenic |
| GTGGAAGGCAACCTATATGG+AGG | 0.675974 | 3_3:+90183533 | Msa0482760:CDS |
| AATGATTTGGAAACTTGCTG+AGG | 0.679513 | 3_3:+90179940 | Msa0482760:CDS |
| TCATGTGTAGATCCTGAAGT+GGG | 0.693391 | 3_3:-90179477 | None:intergenic |
| GAGACAAATAGGGAAGAGGG+TGG | 0.697052 | 3_3:-90179317 | None:intergenic |
| TCGGACCTGAATATTGTGAG+TGG | 0.700079 | 3_3:-90183563 | None:intergenic |
| GCAGGAAAAGGGTACAACAG+AGG | 0.715152 | 3_3:+90182985 | Msa0482760:intron |
| ATCGATCGACGAAAGTACAG+TGG | 0.721456 | 3_3:+90179196 | Msa0482760:five_prime_UTR |
| TGAGTTGGAGAAAGAAACGG+CGG | 0.722475 | 3_3:-90179339 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTATTTTTCTGTTTTTT+AGG | + | chr3_3:90180182-90180201 | Msa0482760:intron | 10.0% |
| !!! | ATTTATTTTTCTGTTTTTTA+GGG | + | chr3_3:90180183-90180202 | Msa0482760:intron | 10.0% |
| !! | TGAACAAATTAAAATTAAAA+TGG | - | chr3_3:90183439-90183458 | None:intergenic | 10.0% |
| !! | TCATAAGAAAAAAAAAATGA+TGG | + | chr3_3:90179709-90179728 | Msa0482760:intron | 15.0% |
| !! | CATAAGAAAAAAAAAATGAT+GGG | + | chr3_3:90179710-90179729 | Msa0482760:intron | 15.0% |
| !! | TTTAATGAAAAGGAAAAAAA+AGG | - | chr3_3:90180102-90180121 | None:intergenic | 15.0% |
| !! | ACAAATAAACTTTAATGAAA+AGG | - | chr3_3:90180112-90180131 | None:intergenic | 15.0% |
| !! | TTTCATTAAAGTTTATTTGT+TGG | + | chr3_3:90180112-90180131 | Msa0482760:intron | 15.0% |
| !! | AATAAGAAATTATCAAGAAT+GGG | - | chr3_3:90181064-90181083 | None:intergenic | 15.0% |
| !! | TAATAAGAAATTATCAAGAA+TGG | - | chr3_3:90181065-90181084 | None:intergenic | 15.0% |
| !!! | AGATTATTTTGAAATGTATT+GGG | + | chr3_3:90182729-90182748 | Msa0482760:intron | 15.0% |
| !! | AATTTAACAAATAACAGTTA+TGG | + | chr3_3:90183164-90183183 | Msa0482760:intron | 15.0% |
| !!! | ATTTAATTTTTTTGCTTCAT+AGG | + | chr3_3:90183691-90183710 | Msa0482760:three_prime_UTR | 15.0% |
| !!! | AGTGAGAAAATTTGATTTTT+AGG | + | chr3_3:90179735-90179754 | Msa0482760:intron | 20.0% |
| !!! | TCATAAGAAAGTTATTGATT+TGG | + | chr3_3:90180012-90180031 | Msa0482760:CDS | 20.0% |
| !! | ACAAATTAATGAAATAATGC+AGG | - | chr3_3:90181514-90181533 | None:intergenic | 20.0% |
| !! | AACTGAAATTGAAGAAATAT+CGG | - | chr3_3:90182079-90182098 | None:intergenic | 20.0% |
| !! | CTTAGAAAGGAATATAAATA+TGG | + | chr3_3:90182099-90182118 | Msa0482760:intron | 20.0% |
| !! | TATGGTATTTATTATATTGC+AGG | + | chr3_3:90182199-90182218 | Msa0482760:intron | 20.0% |
| !!! | GAAATGTGATTTATTCTTTT+TGG | + | chr3_3:90182431-90182450 | Msa0482760:intron | 20.0% |
| !!! | GAGATTATTTTGAAATGTAT+TGG | + | chr3_3:90182728-90182747 | Msa0482760:intron | 20.0% |
| !!! | TTAGTCTTACCTTTTTTTTT+TGG | + | chr3_3:90182782-90182801 | Msa0482760:intron | 20.0% |
| !!! | TAGTCTTACCTTTTTTTTTT+GGG | + | chr3_3:90182783-90182802 | Msa0482760:intron | 20.0% |
| !! | CACAATTCAACAAAATAAAT+CGG | - | chr3_3:90182874-90182893 | None:intergenic | 20.0% |
| !! | TTTCCTCTCATATTATTATT+TGG | + | chr3_3:90183206-90183225 | Msa0482760:intron | 20.0% |
| !! | AGAAGTTCATAAATGTATAA+AGG | - | chr3_3:90183301-90183320 | None:intergenic | 20.0% |
| !! | AAGAAAATAATGATGAAAAC+AGG | - | chr3_3:90183745-90183764 | None:intergenic | 20.0% |
| ! | ACTAAGATTGTTTGTACTAT+TGG | + | chr3_3:90179896-90179915 | Msa0482760:CDS | 25.0% |
| ! | ATTTCCTTTGTATTAGTAGA+AGG | - | chr3_3:90179923-90179942 | None:intergenic | 25.0% |
| ! | CTAATACAAAGGAAATGATT+TGG | + | chr3_3:90179927-90179946 | Msa0482760:CDS | 25.0% |
| ! | TGTACTAAATAGGTTATTGT+GGG | + | chr3_3:90180643-90180662 | Msa0482760:intron | 25.0% |
| ! | TTGTCAAATAGTTGTTATAG+TGG | - | chr3_3:90180707-90180726 | None:intergenic | 25.0% |
| !! | CTTTTCTGCAACAAATTAAA+AGG | - | chr3_3:90181177-90181196 | None:intergenic | 25.0% |
| !!! | CTTTTAATTTGTTGCAGAAA+AGG | + | chr3_3:90181175-90181194 | Msa0482760:intron | 25.0% |
| ! | GTAATAATTGAATGCAAGTT+CGG | - | chr3_3:90181465-90181484 | None:intergenic | 25.0% |
| ! | TAATGAAATAATGCAGGATT+AGG | - | chr3_3:90181508-90181527 | None:intergenic | 25.0% |
| !! | GCTAAAGATTTATGTTTCTA+CGG | - | chr3_3:90181582-90181601 | None:intergenic | 25.0% |
| !!! | TTTTGTTCACTGATTTATTC+TGG | + | chr3_3:90181612-90181631 | Msa0482760:intron | 25.0% |
| ! | TTCAATTTCAGTTCTTAGAA+AGG | + | chr3_3:90182086-90182105 | Msa0482760:intron | 25.0% |
| !!! | TAGTCATCTTCTATTTTAAG+AGG | - | chr3_3:90182651-90182670 | None:intergenic | 25.0% |
| ! | ATAATCTCTCAAACATACTT+AGG | - | chr3_3:90182716-90182735 | None:intergenic | 25.0% |
| ! | ATGTATTGGGTTAAATTGTT+TGG | + | chr3_3:90182742-90182761 | Msa0482760:intron | 25.0% |
| ! | AAAGGTAAGACTAATTATTG+AGG | - | chr3_3:90182776-90182795 | None:intergenic | 25.0% |
| ! | ATATCCAACCCAAAAAAAAA+AGG | - | chr3_3:90182794-90182813 | None:intergenic | 25.0% |
| ! | ACAAAATAAATCGGATTGAT+CGG | - | chr3_3:90182865-90182884 | None:intergenic | 25.0% |
| ! | TTCGGAAGATATCTTTAATA+TGG | + | chr3_3:90183104-90183123 | Msa0482760:intron | 25.0% |
| ! | TCGGAAGATATCTTTAATAT+GGG | + | chr3_3:90183105-90183124 | Msa0482760:intron | 25.0% |
| ! | AAGCCAAATAATAATATGAG+AGG | - | chr3_3:90183212-90183231 | None:intergenic | 25.0% |
| ! | AATTAGAACTGAACTCTAAT+TGG | + | chr3_3:90183393-90183412 | Msa0482760:intron | 25.0% |
| ! | AATAACCAAAATGCAAGATT+TGG | - | chr3_3:90183674-90183693 | None:intergenic | 25.0% |
| !! | TTCTTCTGTAAACTCTTTTA+TGG | + | chr3_3:90183760-90183779 | Msa0482760:three_prime_UTR | 25.0% |
| !!! | TACACTTTTGGAACAAGAAA+AGG | + | chr3_3:90179219-90179238 | Msa0482760:five_prime_UTR | 30.0% |
| !!! | ACACTTTTGGAACAAGAAAA+GGG | + | chr3_3:90179220-90179239 | Msa0482760:five_prime_UTR | 30.0% |
| ! | TTTTCTTCGTTTGTATCGAA+CGG | - | chr3_3:90179283-90179302 | None:intergenic | 30.0% |
| !! | AAGATTTTGGAGGAAAAAGA+TGG | - | chr3_3:90179528-90179547 | None:intergenic | 30.0% |
| ACAAACCTTTGAATCATCTT+CGG | - | chr3_3:90179646-90179665 | None:intergenic | 30.0% | |
| AGCGAAATAAGAATAAGAGA+TGG | - | chr3_3:90179676-90179695 | None:intergenic | 30.0% | |
| ATACACCACAAAAACCAAAA+GGG | - | chr3_3:90179784-90179803 | None:intergenic | 30.0% | |
| TATACACCACAAAAACCAAA+AGG | - | chr3_3:90179785-90179804 | None:intergenic | 30.0% | |
| ! | TTTTTGTGGTGTATAGATTG+AGG | + | chr3_3:90179790-90179809 | Msa0482760:intron | 30.0% |
| ! | TTAGTCTTTCTTCTAACCAT+TGG | - | chr3_3:90179881-90179900 | None:intergenic | 30.0% |
| !! | GAAAGTTATTGATTTGGTCA+AGG | + | chr3_3:90180018-90180037 | Msa0482760:CDS | 30.0% |
| !! | GTTTTTAACAAGATTGGTTG+TGG | - | chr3_3:90180234-90180253 | None:intergenic | 30.0% |
| CAACCAATCTTGTTAAAAAC+TGG | + | chr3_3:90180234-90180253 | Msa0482760:CDS | 30.0% | |
| GTGCTAAATGATTGATGAAT+CGG | + | chr3_3:90180425-90180444 | Msa0482760:intron | 30.0% | |
| TTAAATATTGTCTGCTGCAA+AGG | + | chr3_3:90180493-90180512 | Msa0482760:intron | 30.0% | |
| TAAATATTGTCTGCTGCAAA+GGG | + | chr3_3:90180494-90180513 | Msa0482760:intron | 30.0% | |
| ! | GTGTTGTCATTTGTCAATTA+CGG | + | chr3_3:90180546-90180565 | Msa0482760:intron | 30.0% |
| GATAACACTCTGTACTAAAT+AGG | + | chr3_3:90180633-90180652 | Msa0482760:intron | 30.0% | |
| CTGTACTAAATAGGTTATTG+TGG | + | chr3_3:90180642-90180661 | Msa0482760:intron | 30.0% | |
| !! | ATTTGACAACATTGATTCCA+AGG | + | chr3_3:90180718-90180737 | Msa0482760:intron | 30.0% |
| ! | AGCTTTGACATTCTTATTGT+TGG | + | chr3_3:90180781-90180800 | Msa0482760:intron | 30.0% |
| GTCAATTTCCTATTTATCTC+TGG | + | chr3_3:90180812-90180831 | Msa0482760:intron | 30.0% | |
| AGTCAGAAATTCACATAAGA+TGG | - | chr3_3:90180868-90180887 | None:intergenic | 30.0% | |
| !! | AATTTGTTGCAGAAAAGGAT+TGG | + | chr3_3:90181180-90181199 | Msa0482760:intron | 30.0% |
| ! | ATTTGTTGCAGAAAAGGATT+GGG | + | chr3_3:90181181-90181200 | Msa0482760:intron | 30.0% |
| TCAATTATTACTGCATCTGA+TGG | + | chr3_3:90181474-90181493 | Msa0482760:CDS | 30.0% | |
| CAATTATTACTGCATCTGAT+GGG | + | chr3_3:90181475-90181494 | Msa0482760:CDS | 30.0% | |
| AATTATTACTGCATCTGATG+GGG | + | chr3_3:90181476-90181495 | Msa0482760:CDS | 30.0% | |
| !! | TCATTAATTTGTTGCCTAAC+TGG | + | chr3_3:90181522-90181541 | Msa0482760:intron | 30.0% |
| ! | AACAATTTTACCTGCAAAAG+CGG | - | chr3_3:90181723-90181742 | None:intergenic | 30.0% |
| !!! | TTTGGTGTTTTCTCGATAAT+TGG | + | chr3_3:90181783-90181802 | Msa0482760:intron | 30.0% |
| CATATTTGTGGCTACAATAA+CGG | - | chr3_3:90181893-90181912 | None:intergenic | 30.0% | |
| ! | ATTACTTTCGCAGCTTTAAT+TGG | - | chr3_3:90182228-90182247 | None:intergenic | 30.0% |
| TTGAATACTTGGCCAATATT+AGG | - | chr3_3:90182303-90182322 | None:intergenic | 30.0% | |
| TAATATTGGCCAAGTATTCA+AGG | + | chr3_3:90182302-90182321 | Msa0482760:CDS | 30.0% | |
| AAGTTTAGACCTTGAATACT+TGG | - | chr3_3:90182314-90182333 | None:intergenic | 30.0% | |
| !! | AACTACCCTCATTTTAATGT+CGG | + | chr3_3:90182380-90182399 | Msa0482760:intron | 30.0% |
| CGGCAATGAATAAAATATTC+CGG | + | chr3_3:90182400-90182419 | Msa0482760:intron | 30.0% | |
| CTGATCAGTAAAAGCAAATA+TGG | - | chr3_3:90182592-90182611 | None:intergenic | 30.0% | |
| !!! | CTTACCTTTTTTTTTTGGGT+TGG | + | chr3_3:90182787-90182806 | Msa0482760:intron | 30.0% |
| !!! | CTTTGTTGTTGACCTAATTT+TGG | + | chr3_3:90182955-90182974 | Msa0482760:intron | 30.0% |
| TCAGAGAATTCCATGTAAAT+AGG | - | chr3_3:90183035-90183054 | None:intergenic | 30.0% | |
| !!! | GATTTGTTGCAGGTAATTTT+CGG | + | chr3_3:90183086-90183105 | Msa0482760:intron | 30.0% |
| !! | AGAAGTTCTTAGAAGTACTA+TGG | - | chr3_3:90183144-90183163 | None:intergenic | 30.0% |
| TCGAACATTTAACCATGTAT+AGG | + | chr3_3:90183237-90183256 | Msa0482760:intron | 30.0% | |
| CATAAATGTATAAAGGTCGA+TGG | - | chr3_3:90183294-90183313 | None:intergenic | 30.0% | |
| ! | AACTCAGTTGACATTTTCAT+TGG | - | chr3_3:90183364-90183383 | None:intergenic | 30.0% |
| ! | TAATTGGACTTGCTTAAACA+AGG | + | chr3_3:90183409-90183428 | Msa0482760:intron | 30.0% |
| AAGAATGGAATGGTTAAAGA+AGG | + | chr3_3:90183487-90183506 | Msa0482760:CDS | 30.0% | |
| ! | AGAGGTTGAAACTTAATTTG+TGG | - | chr3_3:90183599-90183618 | None:intergenic | 30.0% |
| AAATTAAGTTTCAACCTCTG+AGG | + | chr3_3:90183600-90183619 | Msa0482760:exon | 30.0% | |
| ! | TGATACCAAATCTTGCATTT+TGG | + | chr3_3:90183666-90183685 | Msa0482760:three_prime_UTR | 30.0% |
| GGTTCAGTATTTAGTTAGAA+TGG | + | chr3_3:90183781-90183800 | Msa0482760:three_prime_UTR | 30.0% | |
| CATATGTTAGTTCATGTCAT+TGG | + | chr3_3:90183810-90183829 | Msa0482760:three_prime_UTR | 30.0% | |
| AAGCTAAATATAACAGTCCT+GGG | - | chr3_3:90183880-90183899 | None:intergenic | 30.0% | |
| TCACATGATAATAGTACTCA+AGG | - | chr3_3:90183927-90183946 | None:intergenic | 30.0% | |
| ! | AAAGTACAGTGGTACACTTT+TGG | + | chr3_3:90179207-90179226 | Msa0482760:five_prime_UTR | 35.0% |
| TTAAGTCGCATTAACGTTGT+TGG | + | chr3_3:90179244-90179263 | Msa0482760:five_prime_UTR | 35.0% | |
| ! | GAATGAGTTGGAGAAAGAAA+CGG | - | chr3_3:90179345-90179364 | None:intergenic | 35.0% |
| ! | AAAAGATGGAGGCTTTAACA+AGG | - | chr3_3:90179514-90179533 | None:intergenic | 35.0% |
| !! | ATTTTGGAGGAAAAAGATGG+AGG | - | chr3_3:90179525-90179544 | None:intergenic | 35.0% |
| ! | AGACTTAGGTGGTAAGATTT+TGG | - | chr3_3:90179541-90179560 | None:intergenic | 35.0% |
| CAAACCTTTGAATCATCTTC+GGG | - | chr3_3:90179645-90179664 | None:intergenic | 35.0% | |
| ! | TTACACGTTTTGCAACAAGT+TGG | + | chr3_3:90179827-90179846 | Msa0482760:CDS | 35.0% |
| !! | CAACAAGTTGGTAATGTTTC+TGG | + | chr3_3:90179839-90179858 | Msa0482760:CDS | 35.0% |
| TGGTCCTTCTACTAATACAA+AGG | + | chr3_3:90179916-90179935 | Msa0482760:CDS | 35.0% | |
| !! | AATGATTTGGAAACTTGCTG+AGG | + | chr3_3:90179940-90179959 | Msa0482760:CDS | 35.0% |
| AGGAAAAAAAAGGCTTACCT+TGG | - | chr3_3:90180092-90180111 | None:intergenic | 35.0% | |
| GTTGGTATGATGATATCTTC+AGG | + | chr3_3:90180130-90180149 | Msa0482760:intron | 35.0% | |
| TGATGATATCTTCAGGATCA+CGG | + | chr3_3:90180137-90180156 | Msa0482760:intron | 35.0% | |
| ! | TGGCCAGTTTTTAACAAGAT+TGG | - | chr3_3:90180240-90180259 | None:intergenic | 35.0% |
| AATCTTGTTAAAAACTGGCC+AGG | + | chr3_3:90180239-90180258 | Msa0482760:CDS | 35.0% | |
| GGATAGTAAAAGTGAATTCC+TGG | - | chr3_3:90180260-90180279 | None:intergenic | 35.0% | |
| !! | TTCACTTTTACTATCCAGAG+TGG | + | chr3_3:90180264-90180283 | Msa0482760:CDS | 35.0% |
| TTTGTCAATGATGTCGAAGA+AGG | + | chr3_3:90180327-90180346 | Msa0482760:CDS | 35.0% | |
| TTGTCAATGATGTCGAAGAA+GGG | + | chr3_3:90180328-90180347 | Msa0482760:CDS | 35.0% | |
| AAATATTGTCTGCTGCAAAG+GGG | + | chr3_3:90180495-90180514 | Msa0482760:intron | 35.0% | |
| TGACTCTTGATGTATGATGT+AGG | + | chr3_3:90180883-90180902 | Msa0482760:intron | 35.0% | |
| ATCGATAACTTCGCATTTCA+CGG | - | chr3_3:90180950-90180969 | None:intergenic | 35.0% | |
| AAAGTCTAACCAGTGATTGA+AGG | - | chr3_3:90181030-90181049 | None:intergenic | 35.0% | |
| ! | TTCAATCACTGGTTAGACTT+TGG | + | chr3_3:90181029-90181048 | Msa0482760:intron | 35.0% |
| ! | TTTTTCGTCTTCTCTGTATG+TGG | + | chr3_3:90181096-90181115 | Msa0482760:intron | 35.0% |
| ! | TTTTCGTCTTCTCTGTATGT+GGG | + | chr3_3:90181097-90181116 | Msa0482760:intron | 35.0% |
| !! | TAAGGTTATGTTGGTTTCCA+AGG | + | chr3_3:90181140-90181159 | Msa0482760:intron | 35.0% |
| GATTGGGATGACATCAAATT+TGG | + | chr3_3:90181197-90181216 | Msa0482760:CDS | 35.0% | |
| TGCATCCTTAACGAAAGAAA+CGG | - | chr3_3:90181249-90181268 | None:intergenic | 35.0% | |
| TAATCGAGCAAACTAATCAG+TGG | - | chr3_3:90181353-90181372 | None:intergenic | 35.0% | |
| CAATGCAGGAAGAGATAATA+AGG | + | chr3_3:90181845-90181864 | Msa0482760:intron | 35.0% | |
| TATTGTAGCCACAAATATGC+TGG | + | chr3_3:90181894-90181913 | Msa0482760:CDS | 35.0% | |
| CATACTTTCCAGCATATTTG+TGG | - | chr3_3:90181905-90181924 | None:intergenic | 35.0% | |
| !! | TCCAGAAAGCATTATTCCAT+CGG | - | chr3_3:90181992-90182011 | None:intergenic | 35.0% |
| TAACTATGCACATTGAGATG+TGG | - | chr3_3:90182046-90182065 | None:intergenic | 35.0% | |
| GAAGAAATATCGGAATGTCA+AGG | - | chr3_3:90182069-90182088 | None:intergenic | 35.0% | |
| GACAGAAAGCGACAATAATA+TGG | + | chr3_3:90182181-90182200 | Msa0482760:intron | 35.0% | |
| AATACTTGGCCAATATTAGG+TGG | - | chr3_3:90182300-90182319 | None:intergenic | 35.0% | |
| CATTGCCGACATTAAAATGA+GGG | - | chr3_3:90182388-90182407 | None:intergenic | 35.0% | |
| TCATTGCCGACATTAAAATG+AGG | - | chr3_3:90182389-90182408 | None:intergenic | 35.0% | |
| AATCACATTTCAGTGTCAAC+CGG | - | chr3_3:90182422-90182441 | None:intergenic | 35.0% | |
| TATTAGACATCATGGTTGCA+TGG | - | chr3_3:90182491-90182510 | None:intergenic | 35.0% | |
| AACTGTTGTCTTCACTAGAT+CGG | + | chr3_3:90182524-90182543 | Msa0482760:CDS | 35.0% | |
| TAAGCAACAAGAGAAAGGTA+GGG | - | chr3_3:90182626-90182645 | None:intergenic | 35.0% | |
| TTAAGCAACAAGAGAAAGGT+AGG | - | chr3_3:90182627-90182646 | None:intergenic | 35.0% | |
| AGGTTTAAGCAACAAGAGAA+AGG | - | chr3_3:90182631-90182650 | None:intergenic | 35.0% | |
| ATCGGATTGATCGGTTAATA+AGG | - | chr3_3:90182856-90182875 | None:intergenic | 35.0% | |
| ! | TGTTGTTGACCTAATTTTGG+TGG | + | chr3_3:90182958-90182977 | Msa0482760:intron | 35.0% |
| AATTACCTGCAACAAATCCA+AGG | - | chr3_3:90183084-90183103 | None:intergenic | 35.0% | |
| !! | AGTTCTTAGAAGTACTATGG+AGG | - | chr3_3:90183141-90183160 | None:intergenic | 35.0% |
| TGCATGAATGAACCTATACA+TGG | - | chr3_3:90183252-90183271 | None:intergenic | 35.0% | |
| TATAGGTTCATTCATGCATG+CGG | + | chr3_3:90183254-90183273 | Msa0482760:intron | 35.0% | |
| TGTTTCCATATGCAGAAGAA+TGG | + | chr3_3:90183472-90183491 | Msa0482760:intron | 35.0% | |
| !! | GGTTGAAACTTAATTTGTGG+CGG | - | chr3_3:90183596-90183615 | None:intergenic | 35.0% |
| ! | GTACTTCTAAGGGTATATGT+AGG | - | chr3_3:90183626-90183645 | None:intergenic | 35.0% |
| AAGAGGATGTGTACTTCTAA+GGG | - | chr3_3:90183636-90183655 | None:intergenic | 35.0% | |
| AAAGAGGATGTGTACTTCTA+AGG | - | chr3_3:90183637-90183656 | None:intergenic | 35.0% | |
| !! | AGAAGTACACATCCTCTTTT+TGG | + | chr3_3:90183638-90183657 | Msa0482760:three_prime_UTR | 35.0% |
| AATATAACAGTCCTGGGATA+TGG | - | chr3_3:90183874-90183893 | None:intergenic | 35.0% | |
| CAAGCTAAATATAACAGTCC+TGG | - | chr3_3:90183881-90183900 | None:intergenic | 35.0% | |
| ! | CATTAACGTTGTTGGTTGGT+TGG | + | chr3_3:90179252-90179271 | Msa0482760:five_prime_UTR | 40.0% |
| CATTGTAGTAGAGAGAGAGA+GGG | - | chr3_3:90179412-90179431 | None:intergenic | 40.0% | |
| ACATTGTAGTAGAGAGAGAG+AGG | - | chr3_3:90179413-90179432 | None:intergenic | 40.0% | |
| TCTCTCTACTACAATGTCTC+AGG | + | chr3_3:90179416-90179435 | Msa0482760:exon | 40.0% | |
| TCATGTGTAGATCCTGAAGT+GGG | - | chr3_3:90179480-90179499 | None:intergenic | 40.0% | |
| ! | CTTAGGTGGTAAGATTTTGG+AGG | - | chr3_3:90179538-90179557 | None:intergenic | 40.0% |
| TTAGGGGGATTGTTAGACTT+AGG | - | chr3_3:90179555-90179574 | None:intergenic | 40.0% | |
| !! | AGGTTCTGAAGCAAAGCTTA+GGG | - | chr3_3:90179572-90179591 | None:intergenic | 40.0% |
| ! | AGGACTTTCTTGCATTGATG+GGG | - | chr3_3:90179596-90179615 | None:intergenic | 40.0% |
| ! | GAGGACTTTCTTGCATTGAT+GGG | - | chr3_3:90179597-90179616 | None:intergenic | 40.0% |
| TGAGGACTTTCTTGCATTGA+TGG | - | chr3_3:90179598-90179617 | None:intergenic | 40.0% | |
| AATCATCTTCGGGTGATACA+GGG | - | chr3_3:90179635-90179654 | None:intergenic | 40.0% | |
| ATCACCCGAAGATGATTCAA+AGG | + | chr3_3:90179638-90179657 | Msa0482760:CDS | 40.0% | |
| ! | GAAAATTGCTGTGACCCTTT+TGG | + | chr3_3:90179767-90179786 | Msa0482760:intron | 40.0% |
| !!! | TGTGACCCTTTTGGTTTTTG+TGG | + | chr3_3:90179776-90179795 | Msa0482760:intron | 40.0% |
| TTGTGGTGTATAGATTGAGG+CGG | + | chr3_3:90179793-90179812 | Msa0482760:intron | 40.0% | |
| !! | CAAGTTGGTAATGTTTCTGG+TGG | + | chr3_3:90179842-90179861 | Msa0482760:CDS | 40.0% |
| !! | GTAATGTTTCTGGTGGAATG+TGG | + | chr3_3:90179849-90179868 | Msa0482760:CDS | 40.0% |
| GCTCGTATGAATATGTCTCA+TGG | + | chr3_3:90179977-90179996 | Msa0482760:CDS | 40.0% | |
| TGCAATTATGCTTGACACCA+AGG | + | chr3_3:90180072-90180091 | Msa0482760:CDS | 40.0% | |
| TATCTTCAGGATCACGGTAT+CGG | + | chr3_3:90180143-90180162 | Msa0482760:intron | 40.0% | |
| !!! | TTCTGTTTTTTAGGGTCCTG+AGG | + | chr3_3:90180191-90180210 | Msa0482760:intron | 40.0% |
| !!! | TTTTTTAGGGTCCTGAGGTT+AGG | + | chr3_3:90180196-90180215 | Msa0482760:intron | 40.0% |
| TGTCAATGATGTCGAAGAAG+GGG | + | chr3_3:90180329-90180348 | Msa0482760:CDS | 40.0% | |
| AATATTGTCTGCTGCAAAGG+GGG | + | chr3_3:90180496-90180515 | Msa0482760:intron | 40.0% | |
| CATTTGTCAATTACGGATCG+CGG | + | chr3_3:90180553-90180572 | Msa0482760:intron | 40.0% | |
| TCACGCTTCCAGAGATAAAT+AGG | - | chr3_3:90180823-90180842 | None:intergenic | 40.0% | |
| AGCACCAAGTCTTTGATTGT+AGG | + | chr3_3:90180842-90180861 | Msa0482760:intron | 40.0% | |
| ATGGCCTACAATCAAAGACT+TGG | - | chr3_3:90180849-90180868 | None:intergenic | 40.0% | |
| CTCTTGATGTATGATGTAGG+TGG | + | chr3_3:90180886-90180905 | Msa0482760:intron | 40.0% | |
| TGTCTTGGACTTAACCAAGA+AGG | - | chr3_3:90180920-90180939 | None:intergenic | 40.0% | |
| GTGAAATGCGAAGTTATCGA+TGG | + | chr3_3:90180949-90180968 | Msa0482760:CDS | 40.0% | |
| AAATGCGAAGTTATCGATGG+AGG | + | chr3_3:90180952-90180971 | Msa0482760:CDS | 40.0% | |
| CGGAGACATTTGAATGTTAG+AGG | + | chr3_3:90180988-90181007 | Msa0482760:CDS | 40.0% | |
| AAAAGGAATGTTATGCGCCT+TGG | - | chr3_3:90181160-90181179 | None:intergenic | 40.0% | |
| ! | CTATGCCGTTTCTTTCGTTA+AGG | + | chr3_3:90181241-90181260 | Msa0482760:CDS | 40.0% |
| CAATTCCACTCATCAAATGC+AGG | + | chr3_3:90181387-90181406 | Msa0482760:intron | 40.0% | |
| ATGCAAGTTCGGTATAGAGT+CGG | - | chr3_3:90181454-90181473 | None:intergenic | 40.0% | |
| TAATCCCGATTCTCCAAATC+AGG | - | chr3_3:90181548-90181567 | None:intergenic | 40.0% | |
| ACAGGATGGTAAAAGAAGAC+AGG | - | chr3_3:90181645-90181664 | None:intergenic | 40.0% | |
| TCCATAATGCTTGTCAATGC+AGG | + | chr3_3:90181831-90181850 | Msa0482760:intron | 40.0% | |
| ! | TCCTGCATTGACAAGCATTA+TGG | - | chr3_3:90181835-90181854 | None:intergenic | 40.0% |
| AATAAGGATATGCCGTAGCA+TGG | + | chr3_3:90181861-90181880 | Msa0482760:CDS | 40.0% | |
| ATAAGGATATGCCGTAGCAT+GGG | + | chr3_3:90181862-90181881 | Msa0482760:CDS | 40.0% | |
| AATATCAGATACCTCTGCTC+TGG | - | chr3_3:90181947-90181966 | None:intergenic | 40.0% | |
| ! | ATTGCAATTGCTGTTCGAGA+AGG | + | chr3_3:90181964-90181983 | Msa0482760:CDS | 40.0% |
| TCCGATGGAATAATGCTTTC+TGG | + | chr3_3:90181988-90182007 | Msa0482760:CDS | 40.0% | |
| TAATGCACACCGTAGCATTA+CGG | + | chr3_3:90182244-90182263 | Msa0482760:CDS | 40.0% | |
| ACCATGATGTCTAATACCCT+TGG | + | chr3_3:90182495-90182514 | Msa0482760:CDS | 40.0% | |
| !! | TCCAAGGGTATTAGACATCA+TGG | - | chr3_3:90182499-90182518 | None:intergenic | 40.0% |
| GACAACAGTTGAAGTTCCAA+GGG | - | chr3_3:90182514-90182533 | None:intergenic | 40.0% | |
| AGACAACAGTTGAAGTTCCA+AGG | - | chr3_3:90182515-90182534 | None:intergenic | 40.0% | |
| ACTGTTGTCTTCACTAGATC+GGG | + | chr3_3:90182525-90182544 | Msa0482760:CDS | 40.0% | |
| AAGCAACAAGAGAAAGGTAG+GGG | - | chr3_3:90182625-90182644 | None:intergenic | 40.0% | |
| AGGTGTCTGTCCTATTTACA+TGG | + | chr3_3:90183022-90183041 | Msa0482760:CDS | 40.0% | |
| AGAGACATTCACAAAAGCCT+TGG | + | chr3_3:90183064-90183083 | Msa0482760:CDS | 40.0% | |
| !! | AAAAGCCTTGGATTTGTTGC+AGG | + | chr3_3:90183076-90183095 | Msa0482760:CDS | 40.0% |
| ATGCATGCGGTAATTAACCA+CGG | + | chr3_3:90183267-90183286 | Msa0482760:intron | 40.0% | |
| CCATTCCATTCTTCTGCATA+TGG | - | chr3_3:90183480-90183499 | None:intergenic | 40.0% | |
| CCATATGCAGAAGAATGGAA+TGG | + | chr3_3:90183477-90183496 | Msa0482760:intron | 40.0% | |
| TTGCCTTCCACTTTGTACAA+GGG | - | chr3_3:90183524-90183543 | None:intergenic | 40.0% | |
| AAAGTGGAAGGCAACCTATA+TGG | + | chr3_3:90183530-90183549 | Msa0482760:CDS | 40.0% | |
| CCTGAATATTGTGAGTGGAA+TGG | - | chr3_3:90183561-90183580 | None:intergenic | 40.0% | |
| CCATTCCACTCACAATATTC+AGG | + | chr3_3:90183558-90183577 | Msa0482760:CDS | 40.0% | |
| ! | ATCGATCGACGAAAGTACAG+TGG | + | chr3_3:90179196-90179215 | Msa0482760:five_prime_UTR | 45.0% |
| GTCGCATTAACGTTGTTGGT+TGG | + | chr3_3:90179248-90179267 | Msa0482760:five_prime_UTR | 45.0% | |
| ! | AACGTTGTTGGTTGGTTGGT+TGG | + | chr3_3:90179256-90179275 | Msa0482760:five_prime_UTR | 45.0% |
| AGAAACGGCGGAGACAAATA+GGG | - | chr3_3:90179330-90179349 | None:intergenic | 45.0% | |
| AAGAAACGGCGGAGACAAAT+AGG | - | chr3_3:90179331-90179350 | None:intergenic | 45.0% | |
| ! | TGAGTTGGAGAAAGAAACGG+CGG | - | chr3_3:90179342-90179361 | None:intergenic | 45.0% |
| GATCGAAGAAGGGAATGAGT+TGG | - | chr3_3:90179357-90179376 | None:intergenic | 45.0% | |
| TCGTAAGAGGGAGGTTTGAA+TGG | - | chr3_3:90179457-90179476 | None:intergenic | 45.0% | |
| GTCATGTGTAGATCCTGAAG+TGG | - | chr3_3:90179481-90179500 | None:intergenic | 45.0% | |
| CTTCAGGATCTACACATGAC+AGG | + | chr3_3:90179481-90179500 | Msa0482760:CDS | 45.0% | |
| !! | GTTCTGAAGCAAAGCTTAGG+GGG | - | chr3_3:90179570-90179589 | None:intergenic | 45.0% |
| !! | GGTTCTGAAGCAAAGCTTAG+GGG | - | chr3_3:90179571-90179590 | None:intergenic | 45.0% |
| !! | GAGGTTCTGAAGCAAAGCTT+AGG | - | chr3_3:90179573-90179592 | None:intergenic | 45.0% |
| ! | GGACTTTCTTGCATTGATGG+GGG | - | chr3_3:90179595-90179614 | None:intergenic | 45.0% |
| GAATCATCTTCGGGTGATAC+AGG | - | chr3_3:90179636-90179655 | None:intergenic | 45.0% | |
| TGTATAGATTGAGGCGGAGT+TGG | + | chr3_3:90179799-90179818 | Msa0482760:intron | 45.0% | |
| TGGAATGTGGTCTAAGCCAA+TGG | + | chr3_3:90179862-90179881 | Msa0482760:CDS | 45.0% | |
| !! | ATTTGGAAACTTGCTGAGGC+TGG | + | chr3_3:90179944-90179963 | Msa0482760:CDS | 45.0% |
| TTTACTATCCAGAGTGGCGT+TGG | + | chr3_3:90180270-90180289 | Msa0482760:CDS | 45.0% | |
| CATGCTTCTTGTTGACGGTA+TGG | + | chr3_3:90180353-90180372 | Msa0482760:intron | 45.0% | |
| TGAATCGGCAAACACAAGAG+TGG | + | chr3_3:90180440-90180459 | Msa0482760:intron | 45.0% | |
| !! | ACATTGATTCCAAGGCAGTG+TGG | + | chr3_3:90180726-90180745 | Msa0482760:intron | 45.0% |
| AGGTGGTATGATGTCCTTCT+TGG | + | chr3_3:90180903-90180922 | Msa0482760:intron | 45.0% | |
| CTTGGTTAAGTCCAAGACAG+CGG | + | chr3_3:90180921-90180940 | Msa0482760:CDS | 45.0% | |
| GTTGGGGGTTAAGGTTATGT+TGG | + | chr3_3:90181131-90181150 | Msa0482760:intron | 45.0% | |
| TTCTCCAAATCAGGCCAGTT+AGG | - | chr3_3:90181539-90181558 | None:intergenic | 45.0% | |
| !! | ACTGGCCTGATTTGGAGAAT+CGG | + | chr3_3:90181540-90181559 | Msa0482760:intron | 45.0% |
| ! | CTTCTTTTACCATCCTGTCC+AGG | + | chr3_3:90181647-90181666 | Msa0482760:intron | 45.0% |
| ATGGTTGCAAGAGGAGATCT+TGG | + | chr3_3:90181672-90181691 | Msa0482760:CDS | 45.0% | |
| AAAGCGGAACCTCCTCAATA+GGG | - | chr3_3:90181707-90181726 | None:intergenic | 45.0% | |
| AAAAGCGGAACCTCCTCAAT+AGG | - | chr3_3:90181708-90181727 | None:intergenic | 45.0% | |
| ! | CTTTCTGGAGAAACTGCACA+TGG | + | chr3_3:90182003-90182022 | Msa0482760:CDS | 45.0% |
| ATGCAAACATCTCGCTCATG+TGG | - | chr3_3:90182467-90182486 | None:intergenic | 45.0% | |
| CTTCACTAGATCGGGTTTCA+TGG | + | chr3_3:90182533-90182552 | Msa0482760:CDS | 45.0% | |
| AAAGCAAATATGGTGCCTGC+AGG | - | chr3_3:90182582-90182601 | None:intergenic | 45.0% | |
| !! | TTGGGTTGGATATCTGTGCT+TGG | + | chr3_3:90182801-90182820 | Msa0482760:intron | 45.0% |
| ! | TGTTGTACCCTTTTCCTGCA+TGG | - | chr3_3:90182984-90183003 | None:intergenic | 45.0% |
| ! | GAAAAGGGTACAACAGAGGT+TGG | + | chr3_3:90182989-90183008 | Msa0482760:CDS | 45.0% |
| !! | CAGAGGTTGGCTTTGTATCA+AGG | + | chr3_3:90183002-90183021 | Msa0482760:CDS | 45.0% |
| GAAGTAGCCCTTGTACAAAG+TGG | + | chr3_3:90183514-90183533 | Msa0482760:CDS | 45.0% | |
| TAGCCCTTGTACAAAGTGGA+AGG | + | chr3_3:90183518-90183537 | Msa0482760:CDS | 45.0% | |
| GTTGCCTTCCACTTTGTACA+AGG | - | chr3_3:90183525-90183544 | None:intergenic | 45.0% | |
| GTGGAATGGAACCTCCATAT+AGG | - | chr3_3:90183547-90183566 | None:intergenic | 45.0% | |
| TCGGACCTGAATATTGTGAG+TGG | - | chr3_3:90183566-90183585 | None:intergenic | 45.0% | |
| AATTTGTGGCGGCTACTGTT+CGG | - | chr3_3:90183585-90183604 | None:intergenic | 45.0% | |
| GGTATCAACACGCCAAAAAG+AGG | - | chr3_3:90183653-90183672 | None:intergenic | 45.0% | |
| ATCACATTCAGCCATATCCC+AGG | + | chr3_3:90183860-90183879 | Msa0482760:three_prime_UTR | 45.0% | |
| !! | TAATTGTAAATATAATAATT+TGG | + | chr3_3:90181765-90181784 | Msa0482760:intron | 5.0% |
| GAGACAAATAGGGAAGAGGG+TGG | - | chr3_3:90179320-90179339 | None:intergenic | 50.0% | |
| GCGGAGACAAATAGGGAAGA+GGG | - | chr3_3:90179323-90179342 | None:intergenic | 50.0% | |
| TGGTGAAGGGGATCGAAGAA+GGG | - | chr3_3:90179367-90179386 | None:intergenic | 50.0% | |
| TTGGTGAAGGGGATCGAAGA+AGG | - | chr3_3:90179368-90179387 | None:intergenic | 50.0% | |
| GGAGGTGAAGATTGGTGAAG+GGG | - | chr3_3:90179379-90179398 | None:intergenic | 50.0% | |
| GGGAGGTGAAGATTGGTGAA+GGG | - | chr3_3:90179380-90179399 | None:intergenic | 50.0% | |
| AGGGAGGTGAAGATTGGTGA+AGG | - | chr3_3:90179381-90179400 | None:intergenic | 50.0% | |
| GTAGTAGAGAGAGAGAGGGA+GGG | - | chr3_3:90179408-90179427 | None:intergenic | 50.0% | |
| TGTAGTAGAGAGAGAGAGGG+AGG | - | chr3_3:90179409-90179428 | None:intergenic | 50.0% | |
| ! | ATGTCTCAGGTTGCAACCAC+TGG | + | chr3_3:90179429-90179448 | Msa0482760:CDS | 50.0% |
| GGAGGTTTGAATGGATCCAG+TGG | - | chr3_3:90179448-90179467 | None:intergenic | 50.0% | |
| TCCTGAAGTGGGTCGTAAGA+GGG | - | chr3_3:90179469-90179488 | None:intergenic | 50.0% | |
| ATCCTGAAGTGGGTCGTAAG+AGG | - | chr3_3:90179470-90179489 | None:intergenic | 50.0% | |
| GGGGGATTGTTAGACTTAGG+TGG | - | chr3_3:90179552-90179571 | None:intergenic | 50.0% | |
| ! | CTTTCTTGCATTGATGGGGG+AGG | - | chr3_3:90179592-90179611 | None:intergenic | 50.0% |
| AGGGACAACTTCAGCAGATG+AGG | - | chr3_3:90179616-90179635 | None:intergenic | 50.0% | |
| AAATCCCCACTCCTAACCTC+AGG | - | chr3_3:90180210-90180229 | None:intergenic | 50.0% | |
| GGGGACATGCTTCTTGTTGA+CGG | + | chr3_3:90180348-90180367 | Msa0482760:CDS | 50.0% | |
| AAGGGGGTAAGTCTCTGTCT+CGG | + | chr3_3:90180512-90180531 | Msa0482760:intron | 50.0% | |
| TTTCACGGAATCCGCTGTCT+TGG | - | chr3_3:90180935-90180954 | None:intergenic | 50.0% | |
| GCAACACTGCCTTCAATCAC+TGG | + | chr3_3:90181018-90181037 | Msa0482760:CDS | 50.0% | |
| ! | CTTCTCTGTATGTGGGCTGT+TGG | + | chr3_3:90181104-90181123 | Msa0482760:intron | 50.0% |
| ! | CTGTATGTGGGCTGTTGGTT+TGG | + | chr3_3:90181109-90181128 | Msa0482760:intron | 50.0% |
| !! | ATGTGGGCTGTTGGTTTGGT+TGG | + | chr3_3:90181113-90181132 | Msa0482760:intron | 50.0% |
| !! | TGTGGGCTGTTGGTTTGGTT+GGG | + | chr3_3:90181114-90181133 | Msa0482760:intron | 50.0% |
| !! | GTTGGTTTGGTTGGGGGTTA+AGG | + | chr3_3:90181122-90181141 | Msa0482760:intron | 50.0% |
| CACAGCCTGCATTTGATGAG+TGG | - | chr3_3:90181395-90181414 | None:intergenic | 50.0% | |
| CACTCATCAAATGCAGGCTG+TGG | + | chr3_3:90181393-90181412 | Msa0482760:intron | 50.0% | |
| ! | GTTGCCTAACTGGCCTGATT+TGG | + | chr3_3:90181532-90181551 | Msa0482760:intron | 50.0% |
| !! | CTGGCCTGATTTGGAGAATC+GGG | + | chr3_3:90181541-90181560 | Msa0482760:intron | 50.0% |
| TTACCATCCTGTCCAGGCTA+TGG | + | chr3_3:90181653-90181672 | Msa0482760:intron | 50.0% | |
| TGGTGCAGAACTCCCTATTG+AGG | + | chr3_3:90181692-90181711 | Msa0482760:CDS | 50.0% | |
| TGCAGAACTCCCTATTGAGG+AGG | + | chr3_3:90181695-90181714 | Msa0482760:CDS | 50.0% | |
| GATATGCCGTAGCATGGGAA+AGG | + | chr3_3:90181867-90181886 | Msa0482760:CDS | 50.0% | |
| TAACGGCCTTTCCCATGCTA+CGG | - | chr3_3:90181876-90181895 | None:intergenic | 50.0% | |
| TCAGATACCTCTGCTCTGGT+TGG | - | chr3_3:90181943-90181962 | None:intergenic | 50.0% | |
| GGCTTCTGTCCGTAATGCTA+CGG | - | chr3_3:90182256-90182275 | None:intergenic | 50.0% | |
| ! | ACAGAAGCCGCTTTACCAAG+TGG | + | chr3_3:90182267-90182286 | Msa0482760:CDS | 50.0% |
| ! | CAGAAGCCGCTTTACCAAGT+GGG | + | chr3_3:90182268-90182287 | Msa0482760:CDS | 50.0% |
| CATCTGCCCACTTGGTAAAG+CGG | - | chr3_3:90182277-90182296 | None:intergenic | 50.0% | |
| GGGCAGATGCCACCTAATAT+TGG | + | chr3_3:90182288-90182307 | Msa0482760:CDS | 50.0% | |
| TTGAGCCATTATCGACCTGC+AGG | + | chr3_3:90182564-90182583 | Msa0482760:CDS | 50.0% | |
| CCTGCATGGCCACCAAAATT+AGG | - | chr3_3:90182970-90182989 | None:intergenic | 50.0% | |
| !! | CCTAATTTTGGTGGCCATGC+AGG | + | chr3_3:90182967-90182986 | Msa0482760:intron | 50.0% |
| ! | TTTGGTGGCCATGCAGGAAA+AGG | + | chr3_3:90182973-90182992 | Msa0482760:intron | 50.0% |
| ! | TTGGTGGCCATGCAGGAAAA+GGG | + | chr3_3:90182974-90182993 | Msa0482760:intron | 50.0% |
| ! | GCAGGAAAAGGGTACAACAG+AGG | + | chr3_3:90182985-90183004 | Msa0482760:intron | 50.0% |
| GTATAAAGGTCGATGGACCG+TGG | - | chr3_3:90183287-90183306 | None:intergenic | 50.0% | |
| GTGGAAGGCAACCTATATGG+AGG | + | chr3_3:90183533-90183552 | Msa0482760:CDS | 50.0% | |
| AGGGTATATGTAGGCCTCAG+AGG | - | chr3_3:90183617-90183636 | None:intergenic | 50.0% | |
| GGAAGAGGGTGGACAAGACA+AGG | - | chr3_3:90179309-90179328 | None:intergenic | 55.0% | |
| GGCGGAGACAAATAGGGAAG+AGG | - | chr3_3:90179324-90179343 | None:intergenic | 55.0% | |
| TAGAGAGAGAGAGGGAGGGA+GGG | - | chr3_3:90179404-90179423 | None:intergenic | 55.0% | |
| TGAAGTGGGTCGTAAGAGGG+AGG | - | chr3_3:90179466-90179485 | None:intergenic | 55.0% | |
| TCCCTCTTACGACCCACTTC+AGG | + | chr3_3:90179465-90179484 | Msa0482760:CDS | 55.0% | |
| TAGGGTCCTGAGGTTAGGAG+TGG | + | chr3_3:90180201-90180220 | Msa0482760:intron | 55.0% | |
| AGGGTCCTGAGGTTAGGAGT+GGG | + | chr3_3:90180202-90180221 | Msa0482760:intron | 55.0% | |
| TCCAAGGCAGTGTGGCTTAG+TGG | + | chr3_3:90180734-90180753 | Msa0482760:intron | 55.0% | |
| ACCACTAAGCCACACTGCCT+TGG | - | chr3_3:90180738-90180757 | None:intergenic | 55.0% | |
| !! | GTGGGCTGTTGGTTTGGTTG+GGG | + | chr3_3:90181115-90181134 | Msa0482760:intron | 55.0% |
| !! | TGGGCTGTTGGTTTGGTTGG+GGG | + | chr3_3:90181116-90181135 | Msa0482760:intron | 55.0% |
| CAACCATAGCCTGGACAGGA+TGG | - | chr3_3:90181659-90181678 | None:intergenic | 55.0% | |
| CTTGCAACCATAGCCTGGAC+AGG | - | chr3_3:90181663-90181682 | None:intergenic | 55.0% | |
| GTCCAGGCTATGGTTGCAAG+AGG | + | chr3_3:90181663-90181682 | Msa0482760:intron | 55.0% | |
| CTCCTCTTGCAACCATAGCC+TGG | - | chr3_3:90181668-90181687 | None:intergenic | 55.0% | |
| !! | TGAGGAGGTTCCGCTTTTGC+AGG | + | chr3_3:90181710-90181729 | Msa0482760:CDS | 55.0% |
| GCTGTTCGAGAAGGTTCCGA+TGG | + | chr3_3:90181973-90181992 | Msa0482760:CDS | 55.0% | |
| TTAGGTGGCATCTGCCCACT+TGG | - | chr3_3:90182285-90182304 | None:intergenic | 55.0% | |
| TGGTGCCTGCAGGTCGATAA+TGG | - | chr3_3:90182572-90182591 | None:intergenic | 55.0% | |
| GGAGGGAGGGAGGTGAAGAT+TGG | - | chr3_3:90179387-90179406 | None:intergenic | 60.0% | |
| GTAGAGAGAGAGAGGGAGGG+AGG | - | chr3_3:90179405-90179424 | None:intergenic | 60.0% | |
| GGGTCCTGAGGTTAGGAGTG+GGG | + | chr3_3:90180203-90180222 | Msa0482760:intron | 60.0% | |
| CAGCAGTTCCAACGCCACTC+TGG | - | chr3_3:90180281-90180300 | None:intergenic | 60.0% | |
| ATGGAGGAGAGCTCGCGTCA+CGG | + | chr3_3:90180968-90180987 | Msa0482760:CDS | 60.0% | |
| ACCTCTGCTCTGGTTGGCGT+GGG | - | chr3_3:90181937-90181956 | None:intergenic | 60.0% | |
| TACCTCTGCTCTGGTTGGCG+TGG | - | chr3_3:90181938-90181957 | None:intergenic | 60.0% | |
| GAGAGAGAGGGAGGGAGGGA+GGG | - | chr3_3:90179400-90179419 | None:intergenic | 65.0% | |
| AGAGAGAGAGGGAGGGAGGG+AGG | - | chr3_3:90179401-90179420 | None:intergenic | 65.0% | |
| CCTCTGCTCTGGTTGGCGTG+GGG | - | chr3_3:90181936-90181955 | None:intergenic | 65.0% | |
| AGAGAGGGAGGGAGGGAGGG+AGG | - | chr3_3:90179397-90179416 | None:intergenic | 70.0% | |
| CCCCACGCCAACCAGAGCAG+AGG | + | chr3_3:90181933-90181952 | Msa0482760:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 90179177 | 90183996 | 90179177 | ID=Msa0482760;Name=Msa0482760 |
| chr3_3 | mRNA | 90179177 | 90183996 | 90179177 | ID=Msa0482760-mRNA-1;Parent=Msa0482760;Name=Msa0482760-mRNA-1;_AED=0.06;_eAED=0.06;_QI=252|1|1|1|1|1|12|390|579 |
| chr3_3 | exon | 90179177 | 90179659 | 90179177 | ID=Msa0482760-mRNA-1:exon:26276;Parent=Msa0482760-mRNA-1 |
| chr3_3 | exon | 90179806 | 90180093 | 90179806 | ID=Msa0482760-mRNA-1:exon:26277;Parent=Msa0482760-mRNA-1 |
| chr3_3 | exon | 90180204 | 90180369 | 90180204 | ID=Msa0482760-mRNA-1:exon:26278;Parent=Msa0482760-mRNA-1 |
| chr3_3 | exon | 90180905 | 90181039 | 90180905 | ID=Msa0482760-mRNA-1:exon:26279;Parent=Msa0482760-mRNA-1 |
| chr3_3 | exon | 90181192 | 90181302 | 90181192 | ID=Msa0482760-mRNA-1:exon:26280;Parent=Msa0482760-mRNA-1 |
| chr3_3 | exon | 90181409 | 90181497 | 90181409 | ID=Msa0482760-mRNA-1:exon:26281;Parent=Msa0482760-mRNA-1 |
| chr3_3 | exon | 90181669 | 90181731 | 90181669 | ID=Msa0482760-mRNA-1:exon:26282;Parent=Msa0482760-mRNA-1 |
| chr3_3 | exon | 90181853 | 90182028 | 90181853 | ID=Msa0482760-mRNA-1:exon:26283;Parent=Msa0482760-mRNA-1 |
| chr3_3 | exon | 90182221 | 90182323 | 90182221 | ID=Msa0482760-mRNA-1:exon:26284;Parent=Msa0482760-mRNA-1 |
| chr3_3 | exon | 90182462 | 90182610 | 90182462 | ID=Msa0482760-mRNA-1:exon:26285;Parent=Msa0482760-mRNA-1 |
| chr3_3 | exon | 90182989 | 90183097 | 90182989 | ID=Msa0482760-mRNA-1:exon:26286;Parent=Msa0482760-mRNA-1 |
| chr3_3 | exon | 90183487 | 90183996 | 90183487 | ID=Msa0482760-mRNA-1:exon:26287;Parent=Msa0482760-mRNA-1 |
| chr3_3 | five_prime_UTR | 90179177 | 90179428 | 90179177 | ID=Msa0482760-mRNA-1:five_prime_utr;Parent=Msa0482760-mRNA-1 |
| chr3_3 | CDS | 90179429 | 90179659 | 90179429 | ID=Msa0482760-mRNA-1:cds;Parent=Msa0482760-mRNA-1 |
| chr3_3 | CDS | 90179806 | 90180093 | 90179806 | ID=Msa0482760-mRNA-1:cds;Parent=Msa0482760-mRNA-1 |
| chr3_3 | CDS | 90180204 | 90180369 | 90180204 | ID=Msa0482760-mRNA-1:cds;Parent=Msa0482760-mRNA-1 |
| chr3_3 | CDS | 90180905 | 90181039 | 90180905 | ID=Msa0482760-mRNA-1:cds;Parent=Msa0482760-mRNA-1 |
| chr3_3 | CDS | 90181192 | 90181302 | 90181192 | ID=Msa0482760-mRNA-1:cds;Parent=Msa0482760-mRNA-1 |
| chr3_3 | CDS | 90181409 | 90181497 | 90181409 | ID=Msa0482760-mRNA-1:cds;Parent=Msa0482760-mRNA-1 |
| chr3_3 | CDS | 90181669 | 90181731 | 90181669 | ID=Msa0482760-mRNA-1:cds;Parent=Msa0482760-mRNA-1 |
| chr3_3 | CDS | 90181853 | 90182028 | 90181853 | ID=Msa0482760-mRNA-1:cds;Parent=Msa0482760-mRNA-1 |
| chr3_3 | CDS | 90182221 | 90182323 | 90182221 | ID=Msa0482760-mRNA-1:cds;Parent=Msa0482760-mRNA-1 |
| chr3_3 | CDS | 90182462 | 90182610 | 90182462 | ID=Msa0482760-mRNA-1:cds;Parent=Msa0482760-mRNA-1 |
| chr3_3 | CDS | 90182989 | 90183097 | 90182989 | ID=Msa0482760-mRNA-1:cds;Parent=Msa0482760-mRNA-1 |
| chr3_3 | CDS | 90183487 | 90183606 | 90183487 | ID=Msa0482760-mRNA-1:cds;Parent=Msa0482760-mRNA-1 |
| chr3_3 | three_prime_UTR | 90183607 | 90183996 | 90183607 | ID=Msa0482760-mRNA-1:three_prime_utr;Parent=Msa0482760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
