AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0509960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0509960 MtrunA17_Chr3g0115111 98.229 734 11 1 1 734 1 732 0.0 1492
Msa0509960 MtrunA17_Chr5g0424301 74.176 728 156 6 15 733 28 732 0.0 1092
Msa0509960 MtrunA17_Chr3g0131001 61.497 748 231 11 1 734 1 705 0.0 868
Msa0509960 MtrunA17_Chr8g0385201 59.494 711 219 10 38 734 12 667 0.0 827
Msa0509960 MtrunA17_Chr3g0082501 53.186 722 278 14 52 733 59 760 0.0 692
Msa0509960 MtrunA17_Chr8g0353121 50.811 740 300 12 37 733 32 750 0.0 685
Msa0509960 MtrunA17_Chr1g0171491 49.202 752 298 11 52 733 56 793 0.0 662
Msa0509960 MtrunA17_Chr1g0180261 41.657 845 339 18 15 733 2 818 0.0 571
Msa0509960 MtrunA17_Chr8g0380791 38.697 783 367 18 45 732 1 765 6.94e-174 517
Msa0509960 MtrunA17_Chr7g0256301 61.244 418 135 8 321 733 396 791 7.55e-168 503
Msa0509960 MtrunA17_Chr7g0256301 54.271 199 89 2 51 249 65 261 1.30e-62 224
Msa0509960 MtrunA17_Chr4g0059911 36.441 236 133 6 44 273 40 264 3.13e-33 132
Msa0509960 MtrunA17_Chr4g0059911 39.583 192 112 3 59 247 11 201 9.48e-32 127
Msa0509960 MtrunA17_Chr8g0377671 33.202 253 120 4 44 248 7 258 1.23e-31 125
Msa0509960 MtrunA17_Chr8g0377671 32.143 196 130 2 23 216 76 270 1.54e-25 107
Msa0509960 MtrunA17_Chr2g0316611 36.190 210 131 2 41 248 20 228 9.34e-31 124
Msa0509960 MtrunA17_Chr2g0316611 36.406 217 133 3 36 248 151 366 9.20e-29 119
Msa0509960 MtrunA17_Chr2g0316611 34.673 199 125 2 34 228 78 275 4.28e-24 105
Msa0509960 MtrunA17_Chr2g0316611 39.216 153 88 2 33 181 215 366 2.74e-21 96.7
Msa0509960 MtrunA17_Chr8g0382971 38.372 172 105 1 57 228 25 195 1.14e-30 124
Msa0509960 MtrunA17_Chr8g0382971 34.135 208 133 3 43 248 58 263 1.34e-27 115
Msa0509960 MtrunA17_Chr8g0382971 36.913 149 91 1 106 254 27 172 6.85e-22 98.2
Msa0509960 MtrunA17_Chr8g0382971 37.278 169 101 2 57 221 117 284 1.51e-21 97.1
Msa0509960 MtrunA17_Chr6g0467061 39.106 179 108 1 50 228 12 189 1.02e-29 120
Msa0509960 MtrunA17_Chr6g0467061 32.653 245 135 5 33 248 60 303 2.28e-27 114
Msa0509960 MtrunA17_Chr6g0467061 37.791 172 106 1 57 228 157 327 4.04e-23 101
Msa0509960 MtrunA17_Chr6g0467061 38.129 139 81 2 33 167 198 335 1.80e-15 78.6
Msa0509960 MtrunA17_Chr2g0316631 35.849 212 133 2 41 250 20 230 2.00e-29 119
Msa0509960 MtrunA17_Chr2g0316631 36.683 199 121 3 34 228 78 275 1.72e-28 116
Msa0509960 MtrunA17_Chr2g0316631 31.818 176 92 4 34 205 147 298 3.80e-17 83.2
Msa0509960 MtrunA17_Chr8g0377191 36.181 199 103 2 53 228 8 205 4.74e-29 115
Msa0509960 MtrunA17_Chr8g0377191 35.570 149 96 0 82 230 13 161 1.94e-19 87.4
Msa0509960 MtrunA17_Chr8g0377191 33.108 148 97 1 102 247 10 157 5.21e-17 80.5
Msa0509960 MtrunA17_Chr4g0055371 36.416 173 109 1 58 230 173 344 6.90e-27 114
Msa0509960 MtrunA17_Chr4g0055371 37.931 116 72 0 73 188 233 348 3.26e-18 87.8
Msa0509960 MtrunA17_Chr4g0055371 33.333 126 84 0 103 228 171 296 8.12e-15 77.4
Msa0509960 MtrunA17_Chr7g0233351 34.673 199 127 2 58 256 193 388 9.76e-27 114
Msa0509960 MtrunA17_Chr8g0377211 39.437 142 84 2 53 194 16 155 3.27e-25 102
Msa0509960 MtrunA17_Chr8g0377211 39.394 132 80 0 85 216 23 154 8.15e-24 99.0
Msa0509960 MtrunA17_Chr8g0377211 37.097 124 78 0 105 228 20 143 2.83e-17 80.1
Msa0509960 MtrunA17_Chr8g0377211 39.167 120 71 1 131 248 23 142 3.49e-17 79.7
Msa0509960 MtrunA17_Chr5g0424111 37.912 182 110 2 58 239 198 376 1.32e-24 107
Msa0509960 MtrunA17_Chr5g0424111 34.000 150 99 0 80 229 196 345 2.77e-17 85.1
Msa0509960 MtrunA17_Chr8g0336161 34.071 226 143 2 13 238 158 377 1.67e-24 107
Msa0509960 MtrunA17_Chr3g0114791 34.328 201 130 2 32 232 161 359 4.29e-24 105
Msa0509960 MtrunA17_Chr8g0377221 32.314 229 112 4 56 246 4 227 5.22e-23 99.8
Msa0509960 MtrunA17_Chr8g0385241 34.826 201 95 3 64 228 13 213 4.79e-21 96.7
Msa0509960 MtrunA17_Chr8g0385241 29.717 212 123 4 56 248 124 328 1.36e-19 92.0
Msa0509960 MtrunA17_Chr8g0385241 29.386 228 123 4 57 250 56 279 7.79e-18 86.7
Msa0509960 MtrunA17_Chr8g0385241 33.121 157 104 1 73 228 173 329 3.91e-16 81.6
Msa0509960 MtrunA17_Chr8g0385241 32.121 165 102 1 80 234 9 173 9.58e-15 77.4
Msa0509960 MtrunA17_Chr8g0385241 30.247 162 111 2 59 219 183 343 2.16e-13 73.2
Msa0509960 MtrunA17_Chr8g0385241 30.216 139 97 0 57 195 204 342 2.73e-12 69.7
Msa0509960 MtrunA17_Chr8g0383331 32.143 168 98 3 101 264 1 156 3.74e-19 85.5
Msa0509960 MtrunA17_Chr8g0383331 32.653 147 98 1 57 203 4 149 1.43e-17 80.9
Msa0509960 MtrunA17_Chr8g0383331 32.653 147 99 0 80 226 3 149 3.15e-17 79.7
Msa0509960 MtrunA17_Chr5g0398011 41.525 118 68 1 55 172 33 149 5.02e-19 84.3
Msa0509960 MtrunA17_Chr5g0398011 33.621 116 77 0 104 219 35 150 1.17e-13 68.9
Msa0509960 MtrunA17_Chr5g0398011 31.579 114 78 0 82 195 36 149 9.62e-12 63.5
Msa0509960 MtrunA17_Chr5g0398021 44.554 101 55 1 57 157 13 112 9.23e-18 80.9
Msa0509960 MtrunA17_Chr5g0398021 39.423 104 63 0 123 226 9 112 1.06e-14 72.4
Msa0509960 MtrunA17_Chr5g0398021 36.364 99 63 0 106 204 15 113 4.67e-13 67.4
Msa0509960 MtrunA17_Chr5g0398021 33.333 99 64 1 151 247 14 112 5.85e-11 61.6
Msa0509960 MtrunA17_Chr8g0383551 28.571 238 110 9 62 248 33 261 2.50e-16 81.6
Msa0509960 MtrunA17_Chr8g0383551 27.607 163 110 4 68 222 129 291 1.30e-11 67.0
Msa0509960 MtrunA17_Chr1g0210831 35.200 125 79 2 86 209 618 741 4.23e-14 76.3
Msa0509960 MtrunA17_Chr1g0210831 30.400 125 87 0 106 230 615 739 7.06e-12 68.9
Msa0509960 MtrunA17_Chr4g0069951 32.927 164 94 7 430 580 1555 1715 4.98e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0509960 AT1G77740.2 70.914 722 183 6 22 733 49 753 0.0 1041
Msa0509960 AT1G77740.1 70.914 722 183 6 22 733 49 753 0.0 1041
Msa0509960 AT1G21980.1 69.819 719 194 6 22 733 49 751 0.0 1021
Msa0509960 AT2G26420.2 55.510 726 268 15 32 734 26 719 0.0 764
Msa0509960 AT2G26420.3 55.510 726 268 15 32 734 26 719 0.0 764
Msa0509960 AT2G26420.1 55.034 725 259 14 32 734 26 705 0.0 757
Msa0509960 AT3G07960.1 53.857 713 278 13 52 733 22 714 0.0 725
Msa0509960 AT3G07960.1 35.514 107 67 1 144 248 21 127 2.76e-14 77.0
Msa0509960 AT3G56960.2 51.226 734 284 14 52 733 67 778 0.0 723
Msa0509960 AT3G56960.1 51.226 734 284 14 52 733 67 778 0.0 723
Msa0509960 AT2G41210.1 51.293 735 277 14 52 733 65 771 0.0 709
Msa0509960 AT3G07960.3 55.062 563 221 9 52 584 22 582 0.0 607
Msa0509960 AT3G07960.3 35.514 107 67 1 144 248 21 127 5.77e-14 75.9
Msa0509960 AT3G07960.2 55.062 563 221 9 52 584 22 582 0.0 607
Msa0509960 AT3G07960.2 35.514 107 67 1 144 248 21 127 7.06e-14 75.5
Msa0509960 AT3G07960.4 55.062 563 221 9 52 584 22 582 0.0 607
Msa0509960 AT3G07960.4 35.514 107 67 1 144 248 21 127 7.06e-14 75.5
Msa0509960 AT3G09920.3 40.814 811 347 19 29 733 29 812 0.0 559
Msa0509960 AT3G09920.4 40.814 811 347 19 29 733 29 812 0.0 559
Msa0509960 AT3G09920.2 40.814 811 347 19 29 733 29 812 0.0 559
Msa0509960 AT3G09920.1 40.814 811 347 19 29 733 29 812 0.0 559
Msa0509960 AT1G10900.2 41.146 768 352 14 50 734 4 754 0.0 545
Msa0509960 AT1G10900.1 41.146 768 352 14 50 734 4 754 0.0 545
Msa0509960 AT1G10900.3 41.146 768 352 14 50 734 4 754 0.0 545
Msa0509960 AT1G60890.1 38.608 790 352 18 50 732 4 767 6.61e-171 510
Msa0509960 AT1G60890.2 38.579 788 351 18 52 732 18 779 5.97e-170 508
Msa0509960 AT1G01460.1 38.263 426 210 10 355 733 3 422 9.66e-79 259
Msa0509960 AT4G01190.1 36.432 398 195 6 372 730 12 390 1.03e-73 244
Msa0509960 AT4G01190.3 36.432 398 195 6 372 730 22 400 1.79e-73 244
Msa0509960 AT4G01190.2 36.432 398 195 6 372 730 22 400 1.79e-73 244
Msa0509960 AT2G35170.1 34.518 197 125 2 60 256 229 421 1.23e-26 114
Msa0509960 AT4G17080.1 35.260 173 111 1 58 230 258 429 4.43e-25 110
Msa0509960 AT4G17080.1 38.793 116 71 0 73 188 318 433 6.57e-21 97.4
Msa0509960 AT4G17080.1 34.899 149 95 1 80 228 235 381 3.67e-17 85.9
Msa0509960 AT1G77660.1 34.715 193 122 2 43 232 161 352 4.45e-24 106
Msa0509960 AT1G21920.2 35.260 173 111 1 58 230 175 346 8.33e-23 101
Msa0509960 AT1G21920.2 38.261 115 71 0 73 187 235 349 1.23e-15 79.7
Msa0509960 AT1G21920.2 30.667 150 81 1 103 229 173 322 1.62e-12 70.1
Msa0509960 AT1G21920.2 36.792 106 65 2 145 248 169 274 8.98e-11 64.7
Msa0509960 AT1G21920.1 35.260 173 111 1 58 230 175 346 1.13e-22 101
Msa0509960 AT1G21920.1 36.434 129 81 1 59 187 222 349 1.51e-15 80.1
Msa0509960 AT1G21920.1 30.667 150 81 1 103 229 173 322 1.60e-12 70.5
Msa0509960 AT1G21920.1 36.792 106 65 2 145 248 169 274 9.14e-11 65.1
Msa0509960 AT1G34260.2 32.161 199 111 7 399 580 1192 1383 1.24e-14 79.0
Msa0509960 AT1G34260.1 32.161 199 111 7 399 580 1192 1383 1.24e-14 79.0
Msa0509960 AT1G34260.3 32.161 199 111 7 399 580 1192 1383 1.24e-14 79.0
Msa0509960 AT1G34260.4 32.161 199 111 7 399 580 952 1143 1.39e-14 78.6
Msa0509960 AT1G75010.1 33.594 128 83 2 83 209 604 730 6.70e-14 75.9
Msa0509960 AT1G75010.1 28.000 125 90 0 106 230 604 728 6.08e-11 66.6

Find 220 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGATGTTGTTCTATATTT+TGG 0.034831 3_4:+58628738 Msa0509960:CDS
GTTGAAGGTGGAAAGGATTT+TGG 0.125060 3_4:+58626162 Msa0509960:CDS
ATGGCAAAATCTTCAAAATT+TGG 0.147602 3_4:-58629100 None:intergenic
CGAGTTTAAGTTAGGTAAAA+TGG 0.171327 3_4:+58625717 Msa0509960:CDS
GCCATGCGCTCTGCTCTTGC+TGG 0.224688 3_4:-58628642 None:intergenic
TTAATCTTCAATTGGGTATA+AGG 0.226807 3_4:+58626397 Msa0509960:CDS
CAATAGACTGTTTGATTAAC+AGG 0.251542 3_4:+58629049 Msa0509960:three_prime_UTR
TCGAAACTGCTTAATCTCTT+TGG 0.256358 3_4:-58626292 None:intergenic
TCACTTGTGACAAAATTCTA+TGG 0.265062 3_4:+58627214 Msa0509960:CDS
ACAATTGAGGAAGCGATTTC+AGG 0.271948 3_4:+58626893 Msa0509960:CDS
CAATTTCGAGCTTTCTTTCC+TGG 0.275413 3_4:-58628999 None:intergenic
TTGATTTGAAGGAGAAGTTT+TGG 0.277331 3_4:+58626571 Msa0509960:CDS
CTTTGAACCAATTTCTTTGC+AGG 0.287736 3_4:-58627522 None:intergenic
TGTTTCGCCTGCAAAGAAAT+TGG 0.293239 3_4:+58627515 Msa0509960:CDS
CACTTTCCTCTCCTCTTTGC+CGG 0.293574 3_4:+58625325 Msa0509960:five_prime_UTR
GAAGAGGTTTCGTGATTTCT+TGG 0.294492 3_4:+58628872 Msa0509960:CDS
GGAAAATTCTCGTGGCCTTC+AGG 0.294946 3_4:+58625679 Msa0509960:CDS
GTATCCGCGCATTTGGATTC+CGG 0.295358 3_4:-58629310 None:intergenic
AAGCAGTTTCGACGGAATTC+TGG 0.296681 3_4:+58626303 Msa0509960:CDS
TTTGGAAGCTGAAGGAATTA+TGG 0.301969 3_4:+58627673 Msa0509960:CDS
TGATAATACTTGTGACAAAA+TGG 0.310651 3_4:+58627730 Msa0509960:CDS
AATTATGGATTACAGTCTTT+TGG 0.313536 3_4:+58627688 Msa0509960:CDS
AAGAGGTTTCGTGATTTCTT+GGG 0.322150 3_4:+58628873 Msa0509960:CDS
CGAAACTGCTTAATCTCTTT+GGG 0.329372 3_4:-58626291 None:intergenic
CCTTCAGTGAACCATCATTA+TGG 0.332152 3_4:-58629119 None:intergenic
TCTTATGCTTAATCTTCAAT+TGG 0.334042 3_4:+58626389 Msa0509960:CDS
GTTTCAGGAAATCATTGATT+AGG 0.336752 3_4:+58628604 Msa0509960:intron
CCTTCAAGTCAAATCGTCTA+TGG 0.339301 3_4:-58627408 None:intergenic
GTTGGGATGTGTAGATTCTT+TGG 0.344943 3_4:+58629212 Msa0509960:three_prime_UTR
TGGGAATCTGATGGTGAAAA+AGG 0.345497 3_4:+58626198 Msa0509960:CDS
TCCGTTTGGTGTGTTGTTGC+CGG 0.352531 3_4:-58625584 None:intergenic
TTTCTGTCTTTCCATTGGTT+GGG 0.355867 3_4:+58629195 Msa0509960:three_prime_UTR
CGAGGAAAAGCTTCCGGAAA+TGG 0.359329 3_4:+58625658 Msa0509960:CDS
GGAACGCTTGTTTGGTTGAA+TGG 0.360362 3_4:+58625955 Msa0509960:CDS
AAGGAAAAGGGAGGTATGTT+TGG 0.362141 3_4:+58625878 Msa0509960:CDS
TAATATCATATTCTACTTTG+TGG 0.362188 3_4:-58629238 None:intergenic
CGAACATGTTTCTCAATATG+AGG 0.363324 3_4:+58627189 Msa0509960:CDS
GTAAACACACCTTGCCCTTT+CGG 0.365516 3_4:-58626012 None:intergenic
CAATGCGACAAGGAGTAAAA+TGG 0.367842 3_4:-58628707 None:intergenic
CTAACTTATAGGTACTTATT+CGG 0.368553 3_4:+58627149 Msa0509960:intron
AATTCGATTGTTATGCTTGT+TGG 0.369321 3_4:-58625496 None:intergenic
TTCAATCTTCTTTATTGAAT+GGG 0.369480 3_4:+58626088 Msa0509960:CDS
TTTCAATCTTCTTTATTGAA+TGG 0.371669 3_4:+58626087 Msa0509960:CDS
TAGTGATTGGTGCTATTTAC+TGG 0.377186 3_4:-58625109 None:intergenic
ATAATGTATCGGTGTTGAAT+AGG 0.380784 3_4:+58626244 Msa0509960:CDS
GAGATATTTACAGTGGTTCA+TGG 0.381217 3_4:+58625770 Msa0509960:CDS
CTCGAAATTGATTCGGGTGT+TGG 0.382501 3_4:+58629012 Msa0509960:three_prime_UTR
GAAGTTGCTATGTTGGGAAT+TGG 0.382649 3_4:+58626046 Msa0509960:CDS
TCTTACATGGGAACCTTCTC+CGG 0.385552 3_4:+58625565 Msa0509960:CDS
TGTCTTGTAGCTCTGCTTCA+AGG 0.388811 3_4:-58627922 None:intergenic
ACGGAAGAGGAACGCTTGTT+TGG 0.389884 3_4:+58625947 Msa0509960:CDS
AAGAATGTTCAAGAAGGAAA+AGG 0.390966 3_4:+58625865 Msa0509960:CDS
AAGTAAAGTATCCGCGCATT+TGG 0.391357 3_4:-58629317 None:intergenic
CTCAGGGAGCTTTCATCTCC+TGG 0.397244 3_4:+58626960 Msa0509960:CDS
AACCTCTTCGAGTAAAGCTT+TGG 0.403371 3_4:-58628858 None:intergenic
TACGAAGGCGAGTTTAAGTT+AGG 0.409763 3_4:+58625709 Msa0509960:CDS
AAGGGCAAGGTGTGTTTACT+TGG 0.414183 3_4:+58626016 Msa0509960:CDS
TGCTGAAGTGTGACCGGGTA+CGG 0.416039 3_4:-58625459 None:intergenic
TGATCATAAATCTGTCATCT+TGG 0.417508 3_4:-58627010 None:intergenic
GATTACATGTTAGCTATTTG+TGG 0.418084 3_4:+58626927 Msa0509960:CDS
GATTGCCCATCACGATGAAC+CGG 0.420765 3_4:-58627363 None:intergenic
AAGAAAGCTCGAAATTGATT+CGG 0.421732 3_4:+58629005 Msa0509960:three_prime_UTR
TTAGGTAAAATGGAAGGTTC+TGG 0.422048 3_4:+58625727 Msa0509960:CDS
AGGAAATCATTGATTAGGTT+AGG 0.422069 3_4:+58628609 Msa0509960:intron
TATGAAGGTGAATGGGAAAA+TGG 0.423372 3_4:+58625985 Msa0509960:CDS
ATTGATTCGGGTGTTGGAAT+TGG 0.431077 3_4:+58629018 Msa0509960:three_prime_UTR
GTACGGCCGGTGGTAGTAAC+CGG 0.434456 3_4:-58625442 None:intergenic
TGGAAACGAGGAAAAGCTTC+CGG 0.437406 3_4:+58625652 Msa0509960:CDS
CATACCTTCTGGCCTCCAAT+TGG 0.438269 3_4:-58627253 None:intergenic
TTGACCAATACACCAGTCTT+GGG 0.443312 3_4:+58628679 Msa0509960:CDS
ATTGAGATCGAGGTCTTTGA+GGG 0.447025 3_4:-58627488 None:intergenic
ACCGGGTGAAACTATATGTA+AGG 0.448524 3_4:+58626350 Msa0509960:CDS
ACGGAGATTATTATGAAGGT+TGG 0.448575 3_4:+58625836 Msa0509960:CDS
CTTATGCTTAATCTTCAATT+GGG 0.449000 3_4:+58626390 Msa0509960:CDS
TCCGGCTGCTGAAGTGTGAC+CGG 0.449099 3_4:-58625465 None:intergenic
AGAAAGCTCGAAATTGATTC+GGG 0.449961 3_4:+58629006 Msa0509960:three_prime_UTR
TTTGACCAATACACCAGTCT+TGG 0.451828 3_4:+58628678 Msa0509960:CDS
AATTGAGATCGAGGTCTTTG+AGG 0.452408 3_4:-58627489 None:intergenic
AGAATGTTCAAGAAGGAAAA+GGG 0.454701 3_4:+58625866 Msa0509960:CDS
GATCATAAATCTGTCATCTT+GGG 0.456803 3_4:-58627009 None:intergenic
TGGAGTAATCTAGTTATTGA+TGG 0.457170 3_4:-58625187 None:intergenic
CACTTGTGACAAAATTCTAT+GGG 0.459389 3_4:+58627215 Msa0509960:CDS
AATTGATCTGAATAATATCC+AGG 0.461248 3_4:+58628981 Msa0509960:three_prime_UTR
GTACATTGTGTCAAACCAAT+TGG 0.461773 3_4:+58627238 Msa0509960:CDS
TGGACTAGGTTTCCTTCTGA+AGG 0.464564 3_4:+58626591 Msa0509960:CDS
TCATCCCAAGACTGGTGTAT+TGG 0.465016 3_4:-58628683 None:intergenic
ACCCAACGGTGATTCTTACA+TGG 0.468531 3_4:+58625552 Msa0509960:CDS
TGTTTCTGAGGTTAAGAGAC+CGG 0.469082 3_4:+58626332 Msa0509960:CDS
GGAATCGTTATGAAGGTGAA+TGG 0.469561 3_4:+58625977 Msa0509960:CDS
GGTAACGGAGATTATTATGA+AGG 0.472824 3_4:+58625832 Msa0509960:CDS
TGGTGTGTTGTTGCCGGAGA+AGG 0.473091 3_4:-58625578 None:intergenic
TGGAAGAACGGTGTTATTAA+CGG 0.473795 3_4:+58625928 Msa0509960:CDS
GAACGCTTGTTTGGTTGAAT+GGG 0.476408 3_4:+58625956 Msa0509960:CDS
AACAACACACCAAACGGATC+AGG 0.483095 3_4:+58625589 Msa0509960:CDS
CCATAGACGATTTGACTTGA+AGG 0.483414 3_4:+58627408 Msa0509960:CDS
AGAGAGAGGTGCATAGTGAT+TGG 0.484279 3_4:-58625122 None:intergenic
TTTGTGGAAATGCTGCCCTC+AGG 0.484497 3_4:+58626943 Msa0509960:CDS
AAAATATAGAACAACATCAT+AGG 0.485216 3_4:-58628736 None:intergenic
AGGAGAGGAAAGTGTTGTGT+TGG 0.487465 3_4:-58625316 None:intergenic
GACAGGGATAGAGTCAAATC+TGG 0.491174 3_4:+58627941 Msa0509960:CDS
GTAATCTAGTTATTGATGGC+TGG 0.491561 3_4:-58625183 None:intergenic
CAAGAGCAGAGCGCATGGCT+CGG 0.492297 3_4:+58628646 Msa0509960:CDS
GAGATTATTATGAAGGTTGG+TGG 0.493359 3_4:+58625839 Msa0509960:CDS
GTTGTATCTACGAAGGTGAA+TGG 0.494101 3_4:+58625632 Msa0509960:CDS
CTTTCATCTCCTGGCAAAAG+TGG 0.494331 3_4:+58626969 Msa0509960:CDS
TCCGGCAACAACACACCAAA+CGG 0.494538 3_4:+58625583 Msa0509960:CDS
ACTGTTTGATTAACAGGCTA+TGG 0.494837 3_4:+58629055 Msa0509960:three_prime_UTR
GTATCGGTGTTGAATAGGAT+TGG 0.499415 3_4:+58626249 Msa0509960:CDS
CGAGTAAAGCTTTGGATCAA+CGG 0.499572 3_4:-58628850 None:intergenic
ACGGATCAGGAAAATACAAA+TGG 0.500009 3_4:+58625602 Msa0509960:CDS
CCGGCTGCTGAAGTGTGACC+GGG 0.500586 3_4:-58625464 None:intergenic
TTGGAAGGATTACTGCCCTA+TGG 0.500847 3_4:+58626653 Msa0509960:CDS
ATCCAAAGCTTTACTCGAAG+AGG 0.501514 3_4:+58628856 Msa0509960:CDS
TTACGACATCAGCAAGAAGC+TGG 0.503669 3_4:+58628782 Msa0509960:CDS
GTTCTGCTTTGTTTCTACTT+CGG 0.504257 3_4:-58625227 None:intergenic
AAATGCGCGGATACTTTACT+TGG 0.507314 3_4:+58629319 Msa0509960:three_prime_UTR
CGGCTGTGAGTCTGAGGAGG+AGG 0.510524 3_4:-58625419 None:intergenic
ATCAATCGATGGAGTTCCGT+TGG 0.514044 3_4:+58626634 Msa0509960:CDS
CCAACATAGCAACTTCCATC+AGG 0.514644 3_4:-58626039 None:intergenic
AAGTCAAATCGTCTATGGAT+TGG 0.518884 3_4:-58627403 None:intergenic
AACGGTGTTATTAACGGAAG+AGG 0.520673 3_4:+58625934 Msa0509960:CDS
CTGATGGAAGTTGCTATGTT+GGG 0.522196 3_4:+58626040 Msa0509960:CDS
GGAATGAGTATATTGGTGAA+TGG 0.523321 3_4:+58625908 Msa0509960:CDS
TGTTTCATACTCGATGCTAC+CGG 0.523766 3_4:-58628914 None:intergenic
CCCGGTCACACTTCAGCAGC+CGG 0.523983 3_4:+58625464 Msa0509960:CDS
GGAAAGAAACGTTACGGTAA+CGG 0.525703 3_4:+58625817 Msa0509960:CDS
GATAATACTTGTGACAAAAT+GGG 0.528057 3_4:+58627731 Msa0509960:CDS
ATCGATGGAGTTCCGTTGGA+AGG 0.528474 3_4:+58626638 Msa0509960:CDS
CCTGATGGAAGTTGCTATGT+TGG 0.529482 3_4:+58626039 Msa0509960:CDS
TTGAAGCAGAGCTACAAGAC+AGG 0.533588 3_4:+58627924 Msa0509960:CDS
GTTGGTAATAACAGAATGAA+AGG 0.533700 3_4:-58625298 None:intergenic
CTGAGGAGGAGGTGTTGTTG+TGG 0.534300 3_4:-58625408 None:intergenic
TTGTGGAAATGCTGCCCTCA+GGG 0.535698 3_4:+58626944 Msa0509960:CDS
CCCAACGGTGATTCTTACAT+GGG 0.537955 3_4:+58625553 Msa0509960:CDS
GAATCGTTATGAAGGTGAAT+GGG 0.538035 3_4:+58625978 Msa0509960:CDS
CATAGACGATTTGACTTGAA+GGG 0.539532 3_4:+58627409 Msa0509960:CDS
TGTATTTGTAGGCACTCTGT+TGG 0.540782 3_4:+58626507 Msa0509960:intron
GGTGTGTTTACTTGGCCTGA+TGG 0.542730 3_4:+58626024 Msa0509960:CDS
GGGAAAATGGTGTTCCGAAA+GGG 0.544352 3_4:+58625998 Msa0509960:CDS
TTGTAGGCACTCTGTTGGAA+AGG 0.546723 3_4:+58626512 Msa0509960:intron
ATAGCTAACATGTAATCAGC+AGG 0.548324 3_4:-58626921 None:intergenic
CTCCTCAGACTCACAGCCGC+CGG 0.550423 3_4:+58625423 Msa0509960:CDS
CCCTTACATATAGTTTCACC+CGG 0.553878 3_4:-58626351 None:intergenic
TCAACGGCTGAGATTGATGA+AGG 0.553947 3_4:-58628834 None:intergenic
CAGCCGCCGGTTACTACCAC+CGG 0.555866 3_4:+58625436 Msa0509960:CDS
ACAGACCCGGTTCATCGTGA+TGG 0.557962 3_4:+58627357 Msa0509960:intron
CTTCAGTCTTATCTGTCGTA+CGG 0.558988 3_4:-58627444 None:intergenic
AGCTCAGAAAAGAAGTCAGA+AGG 0.561565 3_4:-58625158 None:intergenic
CCCATGTAAGAATCACCGTT+GGG 0.561567 3_4:-58625553 None:intergenic
CCATAATGATGGTTCACTGA+AGG 0.562321 3_4:+58629119 Msa0509960:three_prime_UTR
AAAATGGCTCATCCCAAGAC+TGG 0.564949 3_4:-58628691 None:intergenic
AGAGGTTTCGTGATTTCTTG+GGG 0.567121 3_4:+58628874 Msa0509960:CDS
TTACTACCACCGGCCGTACC+CGG 0.570013 3_4:+58625446 Msa0509960:CDS
GCCAGCAAGAGCAGAGCGCA+TGG 0.570278 3_4:+58628641 Msa0509960:CDS
TTTAAGTTAGGTAAAATGGA+AGG 0.570615 3_4:+58625721 Msa0509960:CDS
TTGCTGTGACAATGAGGAAG+AGG 0.570749 3_4:+58626133 Msa0509960:CDS
GACTTGAAGGGATCGTCACA+TGG 0.570790 3_4:+58627421 Msa0509960:CDS
CAGACCCGGTTCATCGTGAT+GGG 0.574346 3_4:+58627358 Msa0509960:intron
ATGATGGTTCACTGAAGGCA+AGG 0.575597 3_4:+58629124 Msa0509960:three_prime_UTR
GTGTGACCGGGTACGGCCGG+TGG 0.576629 3_4:-58625452 None:intergenic
TGGGAAAATGGTGTTCCGAA+AGG 0.578671 3_4:+58625997 Msa0509960:CDS
AACCGGCGGCTGTGAGTCTG+AGG 0.581864 3_4:-58625425 None:intergenic
AACTCCATCGATTGATGTGG+TGG 0.582178 3_4:-58626627 None:intergenic
ATTTGTATTTGGGAATCTGA+TGG 0.583123 3_4:+58626189 Msa0509960:CDS
AATCTACACATCCCAACCAA+TGG 0.584960 3_4:-58629206 None:intergenic
TCCCATGTAAGAATCACCGT+TGG 0.585589 3_4:-58625554 None:intergenic
TGATATTGTTGATAATGTAT+CGG 0.585855 3_4:+58626233 Msa0509960:CDS
ATTGAGGAAGCGATTTCAGG+TGG 0.589268 3_4:+58626896 Msa0509960:CDS
GAGCAGAGCGCATGGCTCGG+AGG 0.591132 3_4:+58628649 Msa0509960:CDS
TTGAATGGGAATCGTTATGA+AGG 0.597420 3_4:+58625970 Msa0509960:CDS
AATGGTGTTCCGAAAGGGCA+AGG 0.597645 3_4:+58626003 Msa0509960:CDS
GTTTCTGAGGTTAAGAGACC+GGG 0.597952 3_4:+58626333 Msa0509960:CDS
GAAGTGTGACCGGGTACGGC+CGG 0.598746 3_4:-58625455 None:intergenic
ATTGTCCAGACAAATTGAGA+GGG 0.600968 3_4:+58627640 Msa0509960:intron
TCCTTCAAATCAAAATCACT+CGG 0.601151 3_4:-58626561 None:intergenic
TGGAAGAAGAATGTTCAAGA+AGG 0.601723 3_4:+58625859 Msa0509960:CDS
CAAACCAATTGGAGGCCAGA+AGG 0.602903 3_4:+58627249 Msa0509960:CDS
GCATGCATACAAGTCACTGC+AGG 0.604105 3_4:+58628806 Msa0509960:CDS
GTAATCTTAGATCCTTCAGA+AGG 0.607853 3_4:-58626603 None:intergenic
CCGGGTGAAACTATATGTAA+GGG 0.608012 3_4:+58626351 Msa0509960:CDS
AATTGTCCAGACAAATTGAG+AGG 0.609484 3_4:+58627639 Msa0509960:intron
ATTGCCCATCACGATGAACC+GGG 0.610262 3_4:-58627362 None:intergenic
GGGATAGAGTCAAATCTGGC+CGG 0.612890 3_4:+58627945 Msa0509960:CDS
GGAGAATATTCAGTGAGGAC+CGG 0.614114 3_4:+58628895 Msa0509960:CDS
CCTTCAGGTTCTATTTACGA+AGG 0.614367 3_4:+58625694 Msa0509960:CDS
GGAAAATACAAATGGAACGA+TGG 0.614574 3_4:+58625610 Msa0509960:CDS
CGGCGGCTGTGAGTCTGAGG+AGG 0.620840 3_4:-58625422 None:intergenic
CATTGTGTCAAACCAATTGG+AGG 0.621598 3_4:+58627241 Msa0509960:CDS
CAGAGTGAAAAGTTTATGCG+TGG 0.622075 3_4:+58627890 Msa0509960:CDS
GTCACAGCAAAATCATCACC+AGG 0.624630 3_4:-58626120 None:intergenic
AGGAGATGAAAGCTCCCTGA+GGG 0.626112 3_4:-58626958 None:intergenic
CCTTCGTAAATAGAACCTGA+AGG 0.628853 3_4:-58625694 None:intergenic
TATATTGGTGAATGGAAGAA+CGG 0.630785 3_4:+58625916 Msa0509960:CDS
TGATGGTTCACTGAAGGCAA+GGG 0.631854 3_4:+58629125 Msa0509960:three_prime_UTR
TACGCCACCACATCAATCGA+TGG 0.633033 3_4:+58626623 Msa0509960:CDS
AAGAGATTAAGCAGTTTCGA+CGG 0.635005 3_4:+58626295 Msa0509960:CDS
CGGAACTCCATCGATTGATG+TGG 0.636137 3_4:-58626630 None:intergenic
TGATCTTTGTACATGAAAGA+TGG 0.636260 3_4:+58629148 Msa0509960:three_prime_UTR
GAAACACAAAATTGAGATCG+AGG 0.636698 3_4:-58627498 None:intergenic
GAGATCGAGGTCTTTGAGGG+TGG 0.639500 3_4:-58627485 None:intergenic
CGGGTGAAACTATATGTAAG+GGG 0.642189 3_4:+58626352 Msa0509960:CDS
CCGGAAATGGAAAATTCTCG+TGG 0.642730 3_4:+58625671 Msa0509960:CDS
AATGTTGTCATGAATCATGA+TGG 0.647937 3_4:+58628945 Msa0509960:three_prime_UTR
TGAAGCAGAGCTACAAGACA+GGG 0.650372 3_4:+58627925 Msa0509960:CDS
ATGTTCAAGAAGGAAAAGGG+AGG 0.651936 3_4:+58625869 Msa0509960:CDS
TAGCATCGAGTATGAAACAA+AGG 0.652241 3_4:+58628918 Msa0509960:exon
ACCACTGTAAATATCTCCGT+CGG 0.657482 3_4:-58625764 None:intergenic
GGTTACGGAAAGAAACGTTA+CGG 0.659807 3_4:+58625811 Msa0509960:CDS
TAGGTCTCCCCAATGCGACA+AGG 0.659959 3_4:-58628717 None:intergenic
TAGGGCAGTAATCCTTCCAA+CGG 0.670381 3_4:-58626650 None:intergenic
CGGCCGGTGGTAGTAACCGG+CGG 0.680663 3_4:-58625439 None:intergenic
TCTTTGTACATGAAAGATGG+TGG 0.688843 3_4:+58629151 Msa0509960:three_prime_UTR
AACGATGGTTGTATCTACGA+AGG 0.690640 3_4:+58625625 Msa0509960:CDS
CTTGGGGAGAATATTCAGTG+AGG 0.694230 3_4:+58628890 Msa0509960:CDS
ACTTGTGACAAAATTCTATG+GGG 0.699706 3_4:+58627216 Msa0509960:CDS
GAAACCGGAATCCAAATGCG+CGG 0.700353 3_4:+58629306 Msa0509960:three_prime_UTR
CAGGAGATGAAAGCTCCCTG+AGG 0.700563 3_4:-58626959 None:intergenic
TCCGACGGAGATATTTACAG+TGG 0.708834 3_4:+58625763 Msa0509960:CDS
TGAAAGGAAATGAATCACTG+TGG 0.718371 3_4:-58625282 None:intergenic
TACGAAGGTGAATGGAAACG+AGG 0.723760 3_4:+58625640 Msa0509960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATTATTGCTATTTTAA+GGG + chr3_4:58627288-58627307 Msa0509960:intron 10.0%
!!! TTTAAGTTGATAAAATAATT+AGG + chr3_4:58627997-58628016 Msa0509960:intron 10.0%
!!! GATAAATTATTGCTATTTTA+AGG + chr3_4:58627287-58627306 Msa0509960:intron 15.0%
!!! ATTATATTGTTTATCCTTTT+AGG + chr3_4:58627851-58627870 Msa0509960:intron 15.0%
!!! TTCTATAAAATGTTGATTTA+GGG - chr3_4:58628079-58628098 None:intergenic 15.0%
!!! ATTCTATAAAATGTTGATTT+AGG - chr3_4:58628080-58628099 None:intergenic 15.0%
!!! CAACATTTTATAGAATAATT+AGG + chr3_4:58628084-58628103 Msa0509960:intron 15.0%
!! ACATAAAAATATGAATGATT+AGG - chr3_4:58628266-58628285 None:intergenic 15.0%
!! TTATGAATGTAAAAAATGTT+AGG + chr3_4:58629258-58629277 Msa0509960:three_prime_UTR 15.0%
!!! AATCAATGCATTTTTTTTTC+CGG - chr3_4:58625347-58625366 None:intergenic 20.0%
!! TTTCAATCTTCTTTATTGAA+TGG + chr3_4:58626087-58626106 Msa0509960:CDS 20.0%
!! TTCAATCTTCTTTATTGAAT+GGG + chr3_4:58626088-58626107 Msa0509960:CDS 20.0%
!!! TGATATTGTTGATAATGTAT+CGG + chr3_4:58626233-58626252 Msa0509960:CDS 20.0%
!! CAATAATTTATCTTCAACAA+AGG - chr3_4:58627279-58627298 None:intergenic 20.0%
!! AAACAAGCAATCAATTAATT+AGG - chr3_4:58628400-58628419 None:intergenic 20.0%
!!! ATACCATCTCTATATTTTAT+TGG + chr3_4:58628436-58628455 Msa0509960:intron 20.0%
!!! TAAATTTTGATGTGTTAAGT+AGG + chr3_4:58628572-58628591 Msa0509960:intron 20.0%
!! AAAATATAGAACAACATCAT+AGG - chr3_4:58628739-58628758 None:intergenic 20.0%
!!! TATGATGTTGTTCTATATTT+TGG + chr3_4:58628738-58628757 Msa0509960:CDS 20.0%
!!! ATGATGTTGTTCTATATTTT+GGG + chr3_4:58628739-58628758 Msa0509960:CDS 20.0%
!! TAATATCATATTCTACTTTG+TGG - chr3_4:58629241-58629260 None:intergenic 20.0%
!! AATGTAAAAAATGTTAGGTA+GGG + chr3_4:58629263-58629282 Msa0509960:three_prime_UTR 20.0%
!! TTTAAGTTAGGTAAAATGGA+AGG + chr3_4:58625721-58625740 Msa0509960:CDS 25.0%
!!! ATTTTGGGAAGATTTGTATT+TGG + chr3_4:58626178-58626197 Msa0509960:CDS 25.0%
!!! TTTTGGGAAGATTTGTATTT+GGG + chr3_4:58626179-58626198 Msa0509960:CDS 25.0%
! TCTTATGCTTAATCTTCAAT+TGG + chr3_4:58626389-58626408 Msa0509960:CDS 25.0%
! CTTATGCTTAATCTTCAATT+GGG + chr3_4:58626390-58626409 Msa0509960:CDS 25.0%
! TTAATCTTCAATTGGGTATA+AGG + chr3_4:58626397-58626416 Msa0509960:CDS 25.0%
!! TTTGTAATTTGCATTAGTTC+TGG + chr3_4:58626463-58626482 Msa0509960:intron 25.0%
!! TTCTGGATTTAAGGAATTTT+TGG + chr3_4:58626480-58626499 Msa0509960:intron 25.0%
!!! TTTTTGGTTTGTGTATTTGT+AGG + chr3_4:58626496-58626515 Msa0509960:intron 25.0%
! AATGATTAACATTAACTACC+AGG - chr3_4:58626707-58626726 None:intergenic 25.0%
! TTATTCTCCTTGTGTTAATT+AGG - chr3_4:58626852-58626871 None:intergenic 25.0%
!! TTTTGAATTTCAGACAATTG+AGG + chr3_4:58626880-58626899 Msa0509960:intron 25.0%
! CTAACTTATAGGTACTTATT+CGG + chr3_4:58627149-58627168 Msa0509960:intron 25.0%
!!! AATTATGGATTACAGTCTTT+TGG + chr3_4:58627688-58627707 Msa0509960:CDS 25.0%
! TGATAATACTTGTGACAAAA+TGG + chr3_4:58627730-58627749 Msa0509960:CDS 25.0%
! GATAATACTTGTGACAAAAT+GGG + chr3_4:58627731-58627750 Msa0509960:CDS 25.0%
!! TTTTATGTTGACGACATTAA+TGG + chr3_4:58628278-58628297 Msa0509960:intron 25.0%
! TTGAATTATCTTTAGCAAGT+AGG + chr3_4:58628318-58628337 Msa0509960:intron 25.0%
! ATTAATTGATTGCTTGTTTC+TGG + chr3_4:58628401-58628420 Msa0509960:intron 25.0%
! TTGCCAATAAAATATAGAGA+TGG - chr3_4:58628442-58628461 None:intergenic 25.0%
! CTTTATAAATGCTGAAGTAT+AGG - chr3_4:58628476-58628495 None:intergenic 25.0%
! CAGCATTTATAAAGTAGTTA+TGG + chr3_4:58628482-58628501 Msa0509960:intron 25.0%
! TATAAAGTAGTTATGGTTGT+TGG + chr3_4:58628489-58628508 Msa0509960:intron 25.0%
! AATTGATCTGAATAATATCC+AGG + chr3_4:58628981-58629000 Msa0509960:three_prime_UTR 25.0%
!!! GCATTGATAATCTTTTTCTA+TGG + chr3_4:58629077-58629096 Msa0509960:three_prime_UTR 25.0%
! ATGGCAAAATCTTCAAAATT+TGG - chr3_4:58629103-58629122 None:intergenic 25.0%
! TGGAAAGACAGAAAAAAAAA+AGG - chr3_4:58629189-58629208 None:intergenic 25.0%
!!! TTTTTTTTCTGTCTTTCCAT+TGG + chr3_4:58629190-58629209 Msa0509960:three_prime_UTR 25.0%
! GAATGTAAAAAATGTTAGGT+AGG + chr3_4:58629262-58629281 Msa0509960:three_prime_UTR 25.0%
! ATGTAAAAAATGTTAGGTAG+GGG + chr3_4:58629264-58629283 Msa0509960:three_prime_UTR 25.0%
!! ATGAAAATGTTTTCAGAAAC+CGG + chr3_4:58629291-58629310 Msa0509960:three_prime_UTR 25.0%
TGGAGTAATCTAGTTATTGA+TGG - chr3_4:58625190-58625209 None:intergenic 30.0%
CTTCGGAGAAAAATAAAAGT+TGG - chr3_4:58625213-58625232 None:intergenic 30.0%
!! GTTGGTAATAACAGAATGAA+AGG - chr3_4:58625301-58625320 None:intergenic 30.0%
AATTCGATTGTTATGCTTGT+TGG - chr3_4:58625499-58625518 None:intergenic 30.0%
! CGAGTTTAAGTTAGGTAAAA+TGG + chr3_4:58625717-58625736 Msa0509960:CDS 30.0%
AAGAATGTTCAAGAAGGAAA+AGG + chr3_4:58625865-58625884 Msa0509960:CDS 30.0%
AGAATGTTCAAGAAGGAAAA+GGG + chr3_4:58625866-58625885 Msa0509960:CDS 30.0%
AAAAACGGGAATGAGTATAT+TGG + chr3_4:58625901-58625920 Msa0509960:CDS 30.0%
TATATTGGTGAATGGAAGAA+CGG + chr3_4:58625916-58625935 Msa0509960:CDS 30.0%
ATTTGTATTTGGGAATCTGA+TGG + chr3_4:58626189-58626208 Msa0509960:CDS 30.0%
!! ATAATGTATCGGTGTTGAAT+AGG + chr3_4:58626244-58626263 Msa0509960:CDS 30.0%
TGTAGTGTTCATTGTTTGTT+TGG + chr3_4:58626437-58626456 Msa0509960:intron 30.0%
GTAGTGTTCATTGTTTGTTT+GGG + chr3_4:58626438-58626457 Msa0509960:intron 30.0%
!! TTGCATTAGTTCTGGATTTA+AGG + chr3_4:58626471-58626490 Msa0509960:intron 30.0%
TCCTTCAAATCAAAATCACT+CGG - chr3_4:58626564-58626583 None:intergenic 30.0%
!! TTGATTTGAAGGAGAAGTTT+TGG + chr3_4:58626571-58626590 Msa0509960:CDS 30.0%
AGTTTCGTTCTTTACATTTC+TGG + chr3_4:58626822-58626841 Msa0509960:intron 30.0%
ACACAAGGAGAATAATGTTA+TGG + chr3_4:58626857-58626876 Msa0509960:intron 30.0%
GATTACATGTTAGCTATTTG+TGG + chr3_4:58626927-58626946 Msa0509960:CDS 30.0%
GATCATAAATCTGTCATCTT+GGG - chr3_4:58627012-58627031 None:intergenic 30.0%
TGATCATAAATCTGTCATCT+TGG - chr3_4:58627013-58627032 None:intergenic 30.0%
!! GAGTTTTGTGACTAACTTAT+AGG + chr3_4:58627138-58627157 Msa0509960:intron 30.0%
TCACTTGTGACAAAATTCTA+TGG + chr3_4:58627214-58627233 Msa0509960:CDS 30.0%
CACTTGTGACAAAATTCTAT+GGG + chr3_4:58627215-58627234 Msa0509960:CDS 30.0%
ACTTGTGACAAAATTCTATG+GGG + chr3_4:58627216-58627235 Msa0509960:CDS 30.0%
!! TTGTTATTTAAACACAGACC+CGG + chr3_4:58627344-58627363 Msa0509960:intron 30.0%
TTGTCTGGACAATTATATCA+AGG - chr3_4:58627633-58627652 None:intergenic 30.0%
CAGAACATATTTCAACTTAC+CGG - chr3_4:58627967-58627986 None:intergenic 30.0%
TGTATCATTGTGTTCCTTAA+AGG + chr3_4:58628131-58628150 Msa0509960:intron 30.0%
AATTATCTTTAGCAAGTAGG+TGG + chr3_4:58628321-58628340 Msa0509960:intron 30.0%
ATTATCTTTAGCAAGTAGGT+GGG + chr3_4:58628322-58628341 Msa0509960:intron 30.0%
!! AGTAGGATTTTTCTTGTTTC+AGG + chr3_4:58628589-58628608 Msa0509960:intron 30.0%
! GTTTCAGGAAATCATTGATT+AGG + chr3_4:58628604-58628623 Msa0509960:intron 30.0%
! AGGAAATCATTGATTAGGTT+AGG + chr3_4:58628609-58628628 Msa0509960:intron 30.0%
AATGTTGTCATGAATCATGA+TGG + chr3_4:58628945-58628964 Msa0509960:three_prime_UTR 30.0%
AAGAAAGCTCGAAATTGATT+CGG + chr3_4:58629005-58629024 Msa0509960:three_prime_UTR 30.0%
CAATAGACTGTTTGATTAAC+AGG + chr3_4:58629049-58629068 Msa0509960:three_prime_UTR 30.0%
! TGAAGATTTTGCCATAATGA+TGG + chr3_4:58629108-58629127 Msa0509960:three_prime_UTR 30.0%
TGATCTTTGTACATGAAAGA+TGG + chr3_4:58629148-58629167 Msa0509960:three_prime_UTR 30.0%
!!! GAAAGTGTACAGTTCTTTTT+TGG + chr3_4:58629349-58629368 Msa0509960:three_prime_UTR 30.0%
!! TAGTGATTGGTGCTATTTAC+TGG - chr3_4:58625112-58625131 None:intergenic 35.0%
! GTAATCTAGTTATTGATGGC+TGG - chr3_4:58625186-58625205 None:intergenic 35.0%
CGGAGAAAAATAAAAGTTGG+TGG - chr3_4:58625210-58625229 None:intergenic 35.0%
!! GTTCTGCTTTGTTTCTACTT+CGG - chr3_4:58625230-58625249 None:intergenic 35.0%
TGAAAGGAAATGAATCACTG+TGG - chr3_4:58625285-58625304 None:intergenic 35.0%
!!! CATTTTTTTTTCCGGCAAAG+AGG - chr3_4:58625339-58625358 None:intergenic 35.0%
!!! GTGATTGACGCATTTTTTGA+AGG - chr3_4:58625378-58625397 None:intergenic 35.0%
! TTGTATTTTCCTGATCCGTT+TGG - chr3_4:58625601-58625620 None:intergenic 35.0%
ACGGATCAGGAAAATACAAA+TGG + chr3_4:58625602-58625621 Msa0509960:CDS 35.0%
GGAAAATACAAATGGAACGA+TGG + chr3_4:58625610-58625629 Msa0509960:CDS 35.0%
TTAGGTAAAATGGAAGGTTC+TGG + chr3_4:58625727-58625746 Msa0509960:CDS 35.0%
GAGATATTTACAGTGGTTCA+TGG + chr3_4:58625770-58625789 Msa0509960:CDS 35.0%
TGGAGTTCCGATAGAAAAAA+CGG + chr3_4:58625790-58625809 Msa0509960:CDS 35.0%
TCCGATAGAAAAAACGGTTA+CGG + chr3_4:58625796-58625815 Msa0509960:CDS 35.0%
!!! TCCGTAACCGTTTTTTCTAT+CGG - chr3_4:58625800-58625819 None:intergenic 35.0%
!! GGTAACGGAGATTATTATGA+AGG + chr3_4:58625832-58625851 Msa0509960:CDS 35.0%
ACGGAGATTATTATGAAGGT+TGG + chr3_4:58625836-58625855 Msa0509960:CDS 35.0%
GAGATTATTATGAAGGTTGG+TGG + chr3_4:58625839-58625858 Msa0509960:CDS 35.0%
TGGAAGAAGAATGTTCAAGA+AGG + chr3_4:58625859-58625878 Msa0509960:CDS 35.0%
GGAATGAGTATATTGGTGAA+TGG + chr3_4:58625908-58625927 Msa0509960:CDS 35.0%
!! TGGAAGAACGGTGTTATTAA+CGG + chr3_4:58625928-58625947 Msa0509960:CDS 35.0%
TTGAATGGGAATCGTTATGA+AGG + chr3_4:58625970-58625989 Msa0509960:CDS 35.0%
GAATCGTTATGAAGGTGAAT+GGG + chr3_4:58625978-58625997 Msa0509960:CDS 35.0%
TATGAAGGTGAATGGGAAAA+TGG + chr3_4:58625985-58626004 Msa0509960:CDS 35.0%
! TTGAATGGGAGTTTTTATCC+TGG + chr3_4:58626102-58626121 Msa0509960:CDS 35.0%
!! ATGATTTTGCTGTGACAATG+AGG + chr3_4:58626127-58626146 Msa0509960:CDS 35.0%
! TTGAAGGTGGAAAGGATTTT+GGG + chr3_4:58626163-58626182 Msa0509960:CDS 35.0%
CGAAACTGCTTAATCTCTTT+GGG - chr3_4:58626294-58626313 None:intergenic 35.0%
TCGAAACTGCTTAATCTCTT+TGG - chr3_4:58626295-58626314 None:intergenic 35.0%
AAGAGATTAAGCAGTTTCGA+CGG + chr3_4:58626295-58626314 Msa0509960:CDS 35.0%
!!! TTCTGGTTGTTTTGTTTCTG+AGG + chr3_4:58626320-58626339 Msa0509960:CDS 35.0%
!!! ACCGAGTGATTTTGATTTGA+AGG + chr3_4:58626560-58626579 Msa0509960:CDS 35.0%
GTAATCTTAGATCCTTCAGA+AGG - chr3_4:58626606-58626625 None:intergenic 35.0%
! ATTACTGCCCTATGGTTTTT+AGG + chr3_4:58626661-58626680 Msa0509960:CDS 35.0%
GGCTATACCTAAAAACCATA+GGG - chr3_4:58626671-58626690 None:intergenic 35.0%
AGGCTATACCTAAAAACCAT+AGG - chr3_4:58626672-58626691 None:intergenic 35.0%
!!! TAGCCTTTTTGTTTTTCACC+TGG + chr3_4:58626686-58626705 Msa0509960:intron 35.0%
CTACCAGGTGAAAAACAAAA+AGG - chr3_4:58626692-58626711 None:intergenic 35.0%
CATTTCTTTAGCACTCACAT+AGG + chr3_4:58626723-58626742 Msa0509960:intron 35.0%
ATAGCTAACATGTAATCAGC+AGG - chr3_4:58626924-58626943 None:intergenic 35.0%
AGTGAAAAAATCCGAAGTCA+AGG + chr3_4:58627037-58627056 Msa0509960:CDS 35.0%
CCAAAAACAAACCTTGACTT+CGG - chr3_4:58627051-58627070 None:intergenic 35.0%
! CATACTAGTTTGAACGAACA+CGG - chr3_4:58627096-58627115 None:intergenic 35.0%
CGAACATGTTTCTCAATATG+AGG + chr3_4:58627189-58627208 Msa0509960:CDS 35.0%
GTACATTGTGTCAAACCAAT+TGG + chr3_4:58627238-58627257 Msa0509960:CDS 35.0%
AAGTCAAATCGTCTATGGAT+TGG - chr3_4:58627406-58627425 None:intergenic 35.0%
!! CATAGACGATTTGACTTGAA+GGG + chr3_4:58627409-58627428 Msa0509960:CDS 35.0%
GAAACACAAAATTGAGATCG+AGG - chr3_4:58627501-58627520 None:intergenic 35.0%
CTTTGAACCAATTTCTTTGC+AGG - chr3_4:58627525-58627544 None:intergenic 35.0%
AATTGTCCAGACAAATTGAG+AGG + chr3_4:58627639-58627658 Msa0509960:intron 35.0%
ATTGTCCAGACAAATTGAGA+GGG + chr3_4:58627640-58627659 Msa0509960:intron 35.0%
TTTGGAAGCTGAAGGAATTA+TGG + chr3_4:58627673-58627692 Msa0509960:CDS 35.0%
!! ATGGATTACAGTCTTTTGGT+CGG + chr3_4:58627692-58627711 Msa0509960:CDS 35.0%
CATCTACAATATGCACAGAA+AGG - chr3_4:58627799-58627818 None:intergenic 35.0%
AAGAGTCATGCTTTCCTAAA+AGG - chr3_4:58627868-58627887 None:intergenic 35.0%
! CGGTAAGTTGAAATATGTTC+TGG + chr3_4:58627965-58627984 Msa0509960:intron 35.0%
ACCACATCCATAGTTTAAGT+GGG + chr3_4:58628037-58628056 Msa0509960:intron 35.0%
GTAACTACCCACTTAAACTA+TGG - chr3_4:58628047-58628066 None:intergenic 35.0%
TCTATCACTGTGTTCCATAA+AGG + chr3_4:58628172-58628191 Msa0509960:intron 35.0%
TACAACATCTCACTCCTTTA+TGG - chr3_4:58628189-58628208 None:intergenic 35.0%
ATAAAGGAGTGAGATGTTGT+AGG + chr3_4:58628188-58628207 Msa0509960:intron 35.0%
! ATTTTACTCCTTGTCGCATT+GGG + chr3_4:58628709-58628728 Msa0509960:CDS 35.0%
AAGAGGTTTCGTGATTTCTT+GGG + chr3_4:58628873-58628892 Msa0509960:CDS 35.0%
! TAGCATCGAGTATGAAACAA+AGG + chr3_4:58628918-58628937 Msa0509960:exon 35.0%
! AGAAAGCTCGAAATTGATTC+GGG + chr3_4:58629006-58629025 Msa0509960:three_prime_UTR 35.0%
ACTGTTTGATTAACAGGCTA+TGG + chr3_4:58629055-58629074 Msa0509960:three_prime_UTR 35.0%
TCTTTGTACATGAAAGATGG+TGG + chr3_4:58629151-58629170 Msa0509960:three_prime_UTR 35.0%
! TTTTCTGTCTTTCCATTGGT+TGG + chr3_4:58629194-58629213 Msa0509960:three_prime_UTR 35.0%
! TTTCTGTCTTTCCATTGGTT+GGG + chr3_4:58629195-58629214 Msa0509960:three_prime_UTR 35.0%
GATATAAGAGAGAGAGAGAG+AGG - chr3_4:58625139-58625158 None:intergenic 40.0%
AGCTCAGAAAAGAAGTCAGA+AGG - chr3_4:58625161-58625180 None:intergenic 40.0%
!! TGCTTGTTGGTGAGATTTTC+CGG - chr3_4:58625486-58625505 None:intergenic 40.0%
!! ATGCTTTTTGGCGGTTCTTT+TGG - chr3_4:58625530-58625549 None:intergenic 40.0%
!! GTTGGGTAAATGCTTTTTGG+CGG - chr3_4:58625539-58625558 None:intergenic 40.0%
!! GCCAAAAAGCATTTACCCAA+CGG + chr3_4:58625538-58625557 Msa0509960:CDS 40.0%
! ACCGTTGGGTAAATGCTTTT+TGG - chr3_4:58625542-58625561 None:intergenic 40.0%
AACGATGGTTGTATCTACGA+AGG + chr3_4:58625625-58625644 Msa0509960:CDS 40.0%
GTTGTATCTACGAAGGTGAA+TGG + chr3_4:58625632-58625651 Msa0509960:CDS 40.0%
! CCACGAGAATTTTCCATTTC+CGG - chr3_4:58625674-58625693 None:intergenic 40.0%
CCTTCGTAAATAGAACCTGA+AGG - chr3_4:58625697-58625716 None:intergenic 40.0%
! CCTTCAGGTTCTATTTACGA+AGG + chr3_4:58625694-58625713 Msa0509960:CDS 40.0%
! TACGAAGGCGAGTTTAAGTT+AGG + chr3_4:58625709-58625728 Msa0509960:CDS 40.0%
!!! GAAGGTTCTGGAACTTTTAC+TGG + chr3_4:58625739-58625758 Msa0509960:CDS 40.0%
ACCACTGTAAATATCTCCGT+CGG - chr3_4:58625767-58625786 None:intergenic 40.0%
GGTTACGGAAAGAAACGTTA+CGG + chr3_4:58625811-58625830 Msa0509960:CDS 40.0%
GGAAAGAAACGTTACGGTAA+CGG + chr3_4:58625817-58625836 Msa0509960:CDS 40.0%
ATGTTCAAGAAGGAAAAGGG+AGG + chr3_4:58625869-58625888 Msa0509960:CDS 40.0%
! AAGGAAAAGGGAGGTATGTT+TGG + chr3_4:58625878-58625897 Msa0509960:CDS 40.0%
! GGGAGGTATGTTTGGAAAAA+CGG + chr3_4:58625886-58625905 Msa0509960:CDS 40.0%
! GGAGGTATGTTTGGAAAAAC+GGG + chr3_4:58625887-58625906 Msa0509960:CDS 40.0%
!! AACGGTGTTATTAACGGAAG+AGG + chr3_4:58625934-58625953 Msa0509960:CDS 40.0%
GAACGCTTGTTTGGTTGAAT+GGG + chr3_4:58625956-58625975 Msa0509960:CDS 40.0%
GGAATCGTTATGAAGGTGAA+TGG + chr3_4:58625977-58625996 Msa0509960:CDS 40.0%
CTGATGGAAGTTGCTATGTT+GGG + chr3_4:58626040-58626059 Msa0509960:CDS 40.0%
GAAGTTGCTATGTTGGGAAT+TGG + chr3_4:58626046-58626065 Msa0509960:CDS 40.0%
!!! AGGAAGAGGTGTTTTGTTGA+AGG + chr3_4:58626147-58626166 Msa0509960:CDS 40.0%
!!! AAGAGGTGTTTTGTTGAAGG+TGG + chr3_4:58626150-58626169 Msa0509960:CDS 40.0%
!! GTGTTTTGTTGAAGGTGGAA+AGG + chr3_4:58626155-58626174 Msa0509960:CDS 40.0%
! GTTGAAGGTGGAAAGGATTT+TGG + chr3_4:58626162-58626181 Msa0509960:CDS 40.0%
! TGGGAATCTGATGGTGAAAA+AGG + chr3_4:58626198-58626217 Msa0509960:CDS 40.0%
!! GTATCGGTGTTGAATAGGAT+TGG + chr3_4:58626249-58626268 Msa0509960:CDS 40.0%
!! TGTTTCTGAGGTTAAGAGAC+CGG + chr3_4:58626332-58626351 Msa0509960:CDS 40.0%
ACCGGGTGAAACTATATGTA+AGG + chr3_4:58626350-58626369 Msa0509960:CDS 40.0%
CCCTTACATATAGTTTCACC+CGG - chr3_4:58626354-58626373 None:intergenic 40.0%
CCGGGTGAAACTATATGTAA+GGG + chr3_4:58626351-58626370 Msa0509960:CDS 40.0%
CGGGTGAAACTATATGTAAG+GGG + chr3_4:58626352-58626371 Msa0509960:CDS 40.0%
TGTATTTGTAGGCACTCTGT+TGG + chr3_4:58626507-58626526 Msa0509960:intron 40.0%
!!! TGAAGGAGAAGTTTTGGACT+AGG + chr3_4:58626577-58626596 Msa0509960:CDS 40.0%
! GCAACATTTGATTTCGTCGA+AGG + chr3_4:58626745-58626764 Msa0509960:intron 40.0%
TGGTCAGCCTAATTAACACA+AGG + chr3_4:58626842-58626861 Msa0509960:intron 40.0%
ACAATTGAGGAAGCGATTTC+AGG + chr3_4:58626893-58626912 Msa0509960:CDS 40.0%
!! CCGAAGTCAAGGTTTGTTTT+TGG + chr3_4:58627048-58627067 Msa0509960:intron 40.0%
CATTGTGTCAAACCAATTGG+AGG + chr3_4:58627241-58627260 Msa0509960:CDS 40.0%
! TTCAACAAAGGCATACCTTC+TGG - chr3_4:58627267-58627286 None:intergenic 40.0%
!!! GATGGGCAATCTTTTTTGCT+CGG + chr3_4:58627375-58627394 Msa0509960:CDS 40.0%
CCTTCAAGTCAAATCGTCTA+TGG - chr3_4:58627411-58627430 None:intergenic 40.0%
!! CCATAGACGATTTGACTTGA+AGG + chr3_4:58627408-58627427 Msa0509960:CDS 40.0%
! CTTCAGTCTTATCTGTCGTA+CGG - chr3_4:58627447-58627466 None:intergenic 40.0%
ATTGAGATCGAGGTCTTTGA+GGG - chr3_4:58627491-58627510 None:intergenic 40.0%
AATTGAGATCGAGGTCTTTG+AGG - chr3_4:58627492-58627511 None:intergenic 40.0%
TGTTTCGCCTGCAAAGAAAT+TGG + chr3_4:58627515-58627534 Msa0509960:CDS 40.0%
ACAATCCCTCTCAATTTGTC+TGG - chr3_4:58627648-58627667 None:intergenic 40.0%
!!! TCACCATTTTTTTTGCGCAC+TGG + chr3_4:58627758-58627777 Msa0509960:CDS 40.0%
GTACCAGTGCGCAAAAAAAA+TGG - chr3_4:58627764-58627783 None:intergenic 40.0%
CAGAGTGAAAAGTTTATGCG+TGG + chr3_4:58627890-58627909 Msa0509960:CDS 40.0%
CACCACATCCATAGTTTAAG+TGG + chr3_4:58628036-58628055 Msa0509960:intron 40.0%
ACCCACTTAAACTATGGATG+TGG - chr3_4:58628041-58628060 None:intergenic 40.0%
TACAGCATCTCACTCCTTTA+AGG - chr3_4:58628148-58628167 None:intergenic 40.0%
TTAAAGGAGTGAGATGCTGT+AGG + chr3_4:58628147-58628166 Msa0509960:intron 40.0%
TAGGTGGGAATAATGTAGAG+CGG + chr3_4:58628337-58628356 Msa0509960:intron 40.0%
GAATAATGTAGAGCGGGAAA+CGG + chr3_4:58628344-58628363 Msa0509960:intron 40.0%
ATTAATTAGGACCACGACCT+GGG - chr3_4:58628387-58628406 None:intergenic 40.0%
AATTAATTAGGACCACGACC+TGG - chr3_4:58628388-58628407 None:intergenic 40.0%
TTTGACCAATACACCAGTCT+TGG + chr3_4:58628678-58628697 Msa0509960:CDS 40.0%
TTGACCAATACACCAGTCTT+GGG + chr3_4:58628679-58628698 Msa0509960:CDS 40.0%
CAATGCGACAAGGAGTAAAA+TGG - chr3_4:58628710-58628729 None:intergenic 40.0%
! CATTTTACTCCTTGTCGCAT+TGG + chr3_4:58628708-58628727 Msa0509960:CDS 40.0%
! TTTTACTCCTTGTCGCATTG+GGG + chr3_4:58628710-58628729 Msa0509960:CDS 40.0%
!! CGAGTAAAGCTTTGGATCAA+CGG - chr3_4:58628853-58628872 None:intergenic 40.0%
ATCCAAAGCTTTACTCGAAG+AGG + chr3_4:58628856-58628875 Msa0509960:CDS 40.0%
AACCTCTTCGAGTAAAGCTT+TGG - chr3_4:58628861-58628880 None:intergenic 40.0%
GAAGAGGTTTCGTGATTTCT+TGG + chr3_4:58628872-58628891 Msa0509960:CDS 40.0%
AGAGGTTTCGTGATTTCTTG+GGG + chr3_4:58628874-58628893 Msa0509960:CDS 40.0%
TGTTTCATACTCGATGCTAC+CGG - chr3_4:58628917-58628936 None:intergenic 40.0%
CAATTTCGAGCTTTCTTTCC+TGG - chr3_4:58629002-58629021 None:intergenic 40.0%
!! ATTGATTCGGGTGTTGGAAT+TGG + chr3_4:58629018-58629037 Msa0509960:three_prime_UTR 40.0%
CCTTCAGTGAACCATCATTA+TGG - chr3_4:58629122-58629141 None:intergenic 40.0%
CCATAATGATGGTTCACTGA+AGG + chr3_4:58629119-58629138 Msa0509960:three_prime_UTR 40.0%
AATCTACACATCCCAACCAA+TGG - chr3_4:58629209-58629228 None:intergenic 40.0%
GTTGGGATGTGTAGATTCTT+TGG + chr3_4:58629212-58629231 Msa0509960:three_prime_UTR 40.0%
! AAGTAAAGTATCCGCGCATT+TGG - chr3_4:58629320-58629339 None:intergenic 40.0%
AAATGCGCGGATACTTTACT+TGG + chr3_4:58629319-58629338 Msa0509960:three_prime_UTR 40.0%
! AGAGAGAGGTGCATAGTGAT+TGG - chr3_4:58625125-58625144 None:intergenic 45.0%
!! AGGAGAGGAAAGTGTTGTGT+TGG - chr3_4:58625319-58625338 None:intergenic 45.0%
!!! TTTTTTCCGGCAAAGAGGAG+AGG - chr3_4:58625334-58625353 None:intergenic 45.0%
ACCCAACGGTGATTCTTACA+TGG + chr3_4:58625552-58625571 Msa0509960:CDS 45.0%
CCCATGTAAGAATCACCGTT+GGG - chr3_4:58625556-58625575 None:intergenic 45.0%
CCCAACGGTGATTCTTACAT+GGG + chr3_4:58625553-58625572 Msa0509960:CDS 45.0%
TCCCATGTAAGAATCACCGT+TGG - chr3_4:58625557-58625576 None:intergenic 45.0%
TCTTACATGGGAACCTTCTC+CGG + chr3_4:58625565-58625584 Msa0509960:CDS 45.0%
AACAACACACCAAACGGATC+AGG + chr3_4:58625589-58625608 Msa0509960:CDS 45.0%
TACGAAGGTGAATGGAAACG+AGG + chr3_4:58625640-58625659 Msa0509960:CDS 45.0%
TGGAAACGAGGAAAAGCTTC+CGG + chr3_4:58625652-58625671 Msa0509960:CDS 45.0%
CCGGAAATGGAAAATTCTCG+TGG + chr3_4:58625671-58625690 Msa0509960:CDS 45.0%
! GGAACTTTTACTGGATCCGA+CGG + chr3_4:58625748-58625767 Msa0509960:CDS 45.0%
TCCGACGGAGATATTTACAG+TGG + chr3_4:58625763-58625782 Msa0509960:CDS 45.0%
GGAACGCTTGTTTGGTTGAA+TGG + chr3_4:58625955-58625974 Msa0509960:CDS 45.0%
TGGGAAAATGGTGTTCCGAA+AGG + chr3_4:58625997-58626016 Msa0509960:CDS 45.0%
GGGAAAATGGTGTTCCGAAA+GGG + chr3_4:58625998-58626017 Msa0509960:CDS 45.0%
GTAAACACACCTTGCCCTTT+CGG - chr3_4:58626015-58626034 None:intergenic 45.0%
AAGGGCAAGGTGTGTTTACT+TGG + chr3_4:58626016-58626035 Msa0509960:CDS 45.0%
CCAACATAGCAACTTCCATC+AGG - chr3_4:58626042-58626061 None:intergenic 45.0%
CCTGATGGAAGTTGCTATGT+TGG + chr3_4:58626039-58626058 Msa0509960:CDS 45.0%
GTCACAGCAAAATCATCACC+AGG - chr3_4:58626123-58626142 None:intergenic 45.0%
TTGCTGTGACAATGAGGAAG+AGG + chr3_4:58626133-58626152 Msa0509960:CDS 45.0%
AAGCAGTTTCGACGGAATTC+TGG + chr3_4:58626303-58626322 Msa0509960:CDS 45.0%
!! GTTTCTGAGGTTAAGAGACC+GGG + chr3_4:58626333-58626352 Msa0509960:CDS 45.0%
TTGTAGGCACTCTGTTGGAA+AGG + chr3_4:58626512-58626531 Msa0509960:intron 45.0%
! TGGACTAGGTTTCCTTCTGA+AGG + chr3_4:58626591-58626610 Msa0509960:CDS 45.0%
! AACTCCATCGATTGATGTGG+TGG - chr3_4:58626630-58626649 None:intergenic 45.0%
ATCAATCGATGGAGTTCCGT+TGG + chr3_4:58626634-58626653 Msa0509960:CDS 45.0%
TAGGGCAGTAATCCTTCCAA+CGG - chr3_4:58626653-58626672 None:intergenic 45.0%
TTGGAAGGATTACTGCCCTA+TGG + chr3_4:58626653-58626672 Msa0509960:CDS 45.0%
ATTGAGGAAGCGATTTCAGG+TGG + chr3_4:58626896-58626915 Msa0509960:CDS 45.0%
CTTTCATCTCCTGGCAAAAG+TGG + chr3_4:58626969-58626988 Msa0509960:CDS 45.0%
!! AAGAAGCTTCCACTTTTGCC+AGG - chr3_4:58626981-58627000 None:intergenic 45.0%
GGGTTTAGTCTACGATTTGC+AGG + chr3_4:58627308-58627327 Msa0509960:intron 45.0%
! TGAGAGGGATTGTGCGTTTT+TGG + chr3_4:58627655-58627674 Msa0509960:CDS 45.0%
!! TGTGCGTTTTTGGAAGCTGA+AGG + chr3_4:58627665-58627684 Msa0509960:CDS 45.0%
! TGTCTTGTAGCTCTGCTTCA+AGG - chr3_4:58627925-58627944 None:intergenic 45.0%
TTGAAGCAGAGCTACAAGAC+AGG + chr3_4:58627924-58627943 Msa0509960:CDS 45.0%
TGAAGCAGAGCTACAAGACA+GGG + chr3_4:58627925-58627944 Msa0509960:CDS 45.0%
GACAGGGATAGAGTCAAATC+TGG + chr3_4:58627941-58627960 Msa0509960:CDS 45.0%
TGATACAAGCCTCTCTTCTC+AGG - chr3_4:58628118-58628137 None:intergenic 45.0%
AGGTGGGAATAATGTAGAGC+GGG + chr3_4:58628338-58628357 Msa0509960:intron 45.0%
TGCATAGCTGCAACTCTGTT+TGG + chr3_4:58628525-58628544 Msa0509960:intron 45.0%
GCATAGCTGCAACTCTGTTT+GGG + chr3_4:58628526-58628545 Msa0509960:intron 45.0%
TGCAACTCTGTTTGGGAGTA+AGG + chr3_4:58628533-58628552 Msa0509960:intron 45.0%
TCATCCCAAGACTGGTGTAT+TGG - chr3_4:58628686-58628705 None:intergenic 45.0%
AAAATGGCTCATCCCAAGAC+TGG - chr3_4:58628694-58628713 None:intergenic 45.0%
TTACGACATCAGCAAGAAGC+TGG + chr3_4:58628782-58628801 Msa0509960:CDS 45.0%
TCAACGGCTGAGATTGATGA+AGG - chr3_4:58628837-58628856 None:intergenic 45.0%
CTTGGGGAGAATATTCAGTG+AGG + chr3_4:58628890-58628909 Msa0509960:CDS 45.0%
GGAGAATATTCAGTGAGGAC+CGG + chr3_4:58628895-58628914 Msa0509960:CDS 45.0%
!! CTCGAAATTGATTCGGGTGT+TGG + chr3_4:58629012-58629031 Msa0509960:three_prime_UTR 45.0%
ATGATGGTTCACTGAAGGCA+AGG + chr3_4:58629124-58629143 Msa0509960:three_prime_UTR 45.0%
TGATGGTTCACTGAAGGCAA+GGG + chr3_4:58629125-58629144 Msa0509960:three_prime_UTR 45.0%
CACTTTCCTCTCCTCTTTGC+CGG + chr3_4:58625325-58625344 Msa0509960:five_prime_UTR 50.0%
TCCGGCAACAACACACCAAA+CGG + chr3_4:58625583-58625602 Msa0509960:CDS 50.0%
!! TCCGTTTGGTGTGTTGTTGC+CGG - chr3_4:58625587-58625606 None:intergenic 50.0%
CGAGGAAAAGCTTCCGGAAA+TGG + chr3_4:58625658-58625677 Msa0509960:CDS 50.0%
GGAAAATTCTCGTGGCCTTC+AGG + chr3_4:58625679-58625698 Msa0509960:CDS 50.0%
ACGGAAGAGGAACGCTTGTT+TGG + chr3_4:58625947-58625966 Msa0509960:CDS 50.0%
AATGGTGTTCCGAAAGGGCA+AGG + chr3_4:58626003-58626022 Msa0509960:CDS 50.0%
GGTGTGTTTACTTGGCCTGA+TGG + chr3_4:58626024-58626043 Msa0509960:CDS 50.0%
TACGCCACCACATCAATCGA+TGG + chr3_4:58626623-58626642 Msa0509960:CDS 50.0%
! CGGAACTCCATCGATTGATG+TGG - chr3_4:58626633-58626652 None:intergenic 50.0%
ATCGATGGAGTTCCGTTGGA+AGG + chr3_4:58626638-58626657 Msa0509960:CDS 50.0%
TTTGTGGAAATGCTGCCCTC+AGG + chr3_4:58626943-58626962 Msa0509960:CDS 50.0%
TTGTGGAAATGCTGCCCTCA+GGG + chr3_4:58626944-58626963 Msa0509960:CDS 50.0%
AGGAGATGAAAGCTCCCTGA+GGG - chr3_4:58626961-58626980 None:intergenic 50.0%
CAAACCAATTGGAGGCCAGA+AGG + chr3_4:58627249-58627268 Msa0509960:CDS 50.0%
CATACCTTCTGGCCTCCAAT+TGG - chr3_4:58627256-58627275 None:intergenic 50.0%
ATTGCCCATCACGATGAACC+GGG - chr3_4:58627365-58627384 None:intergenic 50.0%
GATTGCCCATCACGATGAAC+CGG - chr3_4:58627366-58627385 None:intergenic 50.0%
GACTTGAAGGGATCGTCACA+TGG + chr3_4:58627421-58627440 Msa0509960:CDS 50.0%
GGGATAGAGTCAAATCTGGC+CGG + chr3_4:58627945-58627964 Msa0509960:CDS 50.0%
GTCGAAGAACCTGAGAAGAG+AGG + chr3_4:58628106-58628125 Msa0509960:intron 50.0%
AGCGGGAAACGGTTGTTTGT+GGG + chr3_4:58628355-58628374 Msa0509960:intron 50.0%
GCATGCATACAAGTCACTGC+AGG + chr3_4:58628806-58628825 Msa0509960:CDS 50.0%
GAAACCGGAATCCAAATGCG+CGG + chr3_4:58629306-58629325 Msa0509960:three_prime_UTR 50.0%
GTATCCGCGCATTTGGATTC+CGG - chr3_4:58629313-58629332 None:intergenic 50.0%
!! CTGAGGAGGAGGTGTTGTTG+TGG - chr3_4:58625411-58625430 None:intergenic 55.0%
TGCTGAAGTGTGACCGGGTA+CGG - chr3_4:58625462-58625481 None:intergenic 55.0%
! TGGTGTGTTGTTGCCGGAGA+AGG - chr3_4:58625581-58625600 None:intergenic 55.0%
CAGGAGATGAAAGCTCCCTG+AGG - chr3_4:58626962-58626981 None:intergenic 55.0%
CTCAGGGAGCTTTCATCTCC+TGG + chr3_4:58626960-58626979 Msa0509960:CDS 55.0%
ACAGACCCGGTTCATCGTGA+TGG + chr3_4:58627357-58627376 Msa0509960:intron 55.0%
CAGACCCGGTTCATCGTGAT+GGG + chr3_4:58627358-58627377 Msa0509960:intron 55.0%
! GAGATCGAGGTCTTTGAGGG+TGG - chr3_4:58627488-58627507 None:intergenic 55.0%
GAGCGGGAAACGGTTGTTTG+TGG + chr3_4:58628354-58628373 Msa0509960:intron 55.0%
GCGGGAAACGGTTGTTTGTG+GGG + chr3_4:58628356-58628375 Msa0509960:intron 55.0%
CGGGAAACGGTTGTTTGTGG+GGG + chr3_4:58628357-58628376 Msa0509960:intron 55.0%
! TTGTTTGTGGGGGCATACCC+AGG + chr3_4:58628367-58628386 Msa0509960:intron 55.0%
TAGGTCTCCCCAATGCGACA+AGG - chr3_4:58628720-58628739 None:intergenic 55.0%
GTACGGCCGGTGGTAGTAAC+CGG - chr3_4:58625445-58625464 None:intergenic 60.0%
TTACTACCACCGGCCGTACC+CGG + chr3_4:58625446-58625465 Msa0509960:CDS 60.0%
TCCGGCTGCTGAAGTGTGAC+CGG - chr3_4:58625468-58625487 None:intergenic 60.0%
CAAGAGCAGAGCGCATGGCT+CGG + chr3_4:58628646-58628665 Msa0509960:CDS 60.0%
CGGCTGTGAGTCTGAGGAGG+AGG - chr3_4:58625422-58625441 None:intergenic 65.0%
CTCCTCAGACTCACAGCCGC+CGG + chr3_4:58625423-58625442 Msa0509960:CDS 65.0%
AACCGGCGGCTGTGAGTCTG+AGG - chr3_4:58625428-58625447 None:intergenic 65.0%
! CAGCCGCCGGTTACTACCAC+CGG + chr3_4:58625436-58625455 Msa0509960:CDS 65.0%
GAAGTGTGACCGGGTACGGC+CGG - chr3_4:58625458-58625477 None:intergenic 65.0%
CCGGCTGCTGAAGTGTGACC+GGG - chr3_4:58625467-58625486 None:intergenic 65.0%
CCCGGTCACACTTCAGCAGC+CGG + chr3_4:58625464-58625483 Msa0509960:CDS 65.0%
GCCAGCAAGAGCAGAGCGCA+TGG + chr3_4:58628641-58628660 Msa0509960:CDS 65.0%
GCCATGCGCTCTGCTCTTGC+TGG - chr3_4:58628645-58628664 None:intergenic 65.0%
CGGCGGCTGTGAGTCTGAGG+AGG - chr3_4:58625425-58625444 None:intergenic 70.0%
CGGCCGGTGGTAGTAACCGG+CGG - chr3_4:58625442-58625461 None:intergenic 70.0%
! GTGGGGGCATACCCAGGTCG+TGG + chr3_4:58628373-58628392 Msa0509960:intron 70.0%
! GAGCAGAGCGCATGGCTCGG+AGG + chr3_4:58628649-58628668 Msa0509960:CDS 70.0%
GTGTGACCGGGTACGGCCGG+TGG - chr3_4:58625455-58625474 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 58625097 58629389 58625097 ID=Msa0509960;Name=Msa0509960
chr3_4 mRNA 58625097 58629389 58625097 ID=Msa0509960-mRNA-1;Parent=Msa0509960;Name=Msa0509960-mRNA-1;_AED=0.07;_eAED=0.07;_QI=288|1|1|1|1|1|8|469|734
chr3_4 exon 58625097 58626418 58625097 ID=Msa0509960-mRNA-1:exon:13627;Parent=Msa0509960-mRNA-1
chr3_4 exon 58626518 58626682 58626518 ID=Msa0509960-mRNA-1:exon:13628;Parent=Msa0509960-mRNA-1
chr3_4 exon 58626893 58627058 58626893 ID=Msa0509960-mRNA-1:exon:13629;Parent=Msa0509960-mRNA-1
chr3_4 exon 58627160 58627270 58627160 ID=Msa0509960-mRNA-1:exon:13630;Parent=Msa0509960-mRNA-1
chr3_4 exon 58627361 58627554 58627361 ID=Msa0509960-mRNA-1:exon:13631;Parent=Msa0509960-mRNA-1
chr3_4 exon 58627649 58627779 58627649 ID=Msa0509960-mRNA-1:exon:13632;Parent=Msa0509960-mRNA-1
chr3_4 exon 58627873 58627966 58627873 ID=Msa0509960-mRNA-1:exon:13633;Parent=Msa0509960-mRNA-1
chr3_4 exon 58628611 58629389 58628611 ID=Msa0509960-mRNA-1:exon:13634;Parent=Msa0509960-mRNA-1
chr3_4 five_prime_UTR 58625097 58625384 58625097 ID=Msa0509960-mRNA-1:five_prime_utr;Parent=Msa0509960-mRNA-1
chr3_4 CDS 58625385 58626418 58625385 ID=Msa0509960-mRNA-1:cds;Parent=Msa0509960-mRNA-1
chr3_4 CDS 58626518 58626682 58626518 ID=Msa0509960-mRNA-1:cds;Parent=Msa0509960-mRNA-1
chr3_4 CDS 58626893 58627058 58626893 ID=Msa0509960-mRNA-1:cds;Parent=Msa0509960-mRNA-1
chr3_4 CDS 58627160 58627270 58627160 ID=Msa0509960-mRNA-1:cds;Parent=Msa0509960-mRNA-1
chr3_4 CDS 58627361 58627554 58627361 ID=Msa0509960-mRNA-1:cds;Parent=Msa0509960-mRNA-1
chr3_4 CDS 58627649 58627779 58627649 ID=Msa0509960-mRNA-1:cds;Parent=Msa0509960-mRNA-1
chr3_4 CDS 58627873 58627966 58627873 ID=Msa0509960-mRNA-1:cds;Parent=Msa0509960-mRNA-1
chr3_4 CDS 58628611 58628920 58628611 ID=Msa0509960-mRNA-1:cds;Parent=Msa0509960-mRNA-1
chr3_4 three_prime_UTR 58628921 58629389 58628921 ID=Msa0509960-mRNA-1:three_prime_utr;Parent=Msa0509960-mRNA-1
Gene Sequence

>Msa0509960

ATGCGTCAATCACTTCTCTCTAACCACAACAACACCTCCTCCTCAGACTCACAGCCGCCGGTTACTACCACCGGCCGTACCCGGTCACACTTCAGCAGCCGGAAAATCTCACCAACAAGCATAACAATCGAATTCGAAAAAACCAAAAGAACCGCCAAAAAGCATTTACCCAACGGTGATTCTTACATGGGAACCTTCTCCGGCAACAACACACCAAACGGATCAGGAAAATACAAATGGAACGATGGTTGTATCTACGAAGGTGAATGGAAACGAGGAAAAGCTTCCGGAAATGGAAAATTCTCGTGGCCTTCAGGTTCTATTTACGAAGGCGAGTTTAAGTTAGGTAAAATGGAAGGTTCTGGAACTTTTACTGGATCCGACGGAGATATTTACAGTGGTTCATGGAGTTCCGATAGAAAAAACGGTTACGGAAAGAAACGTTACGGTAACGGAGATTATTATGAAGGTTGGTGGAAGAAGAATGTTCAAGAAGGAAAAGGGAGGTATGTTTGGAAAAACGGGAATGAGTATATTGGTGAATGGAAGAACGGTGTTATTAACGGAAGAGGAACGCTTGTTTGGTTGAATGGGAATCGTTATGAAGGTGAATGGGAAAATGGTGTTCCGAAAGGGCAAGGTGTGTTTACTTGGCCTGATGGAAGTTGCTATGTTGGGAATTGGAATAATAATAATAATGATTTTCAATCTTCTTTATTGAATGGGAGTTTTTATCCTGGTGATGATTTTGCTGTGACAATGAGGAAGAGGTGTTTTGTTGAAGGTGGAAAGGATTTTGGGAAGATTTGTATTTGGGAATCTGATGGTGAAAAAGGTGATATAACTTGTGATATTGTTGATAATGTATCGGTGTTGAATAGGATTGGAAGTGAAAGTGTTTCAGATCCCAAAGAGATTAAGCAGTTTCGACGGAATTCTGGTTGTTTTGTTTCTGAGGTTAAGAGACCGGGTGAAACTATATGTAAGGGGCATAAGAATTATGATCTTATGCTTAATCTTCAATTGGGTATAAGGCACTCTGTTGGAAAGGAAGCTTCTATATCGAGAGAGCTAATACCGAGTGATTTTGATTTGAAGGAGAAGTTTTGGACTAGGTTTCCTTCTGAAGGATCTAAGATTACGCCACCACATCAATCGATGGAGTTCCGTTGGAAGGATTACTGCCCTATGGTTTTTAGACAATTGAGGAAGCGATTTCAGGTGGATCCTGCTGATTACATGTTAGCTATTTGTGGAAATGCTGCCCTCAGGGAGCTTTCATCTCCTGGCAAAAGTGGAAGCTTCTTCTACTTGACCCAAGATGACAGATTTATGATCAAGACAGTGAAAAAATCCGAAGTCAAGGTACTTATTCGGATGCTTCGAAGTTATTACGAACATGTTTCTCAATATGAGGATTCACTTGTGACAAAATTCTATGGGGTACATTGTGTCAAACCAATTGGAGGCCAGAAGACCCGGTTCATCGTGATGGGCAATCTTTTTTGCTCGGAATATCCAATCCATAGACGATTTGACTTGAAGGGATCGTCACATGGCCGTACGACAGATAAGACTGAAGATGAAATTGATGAAACTACCACCCTCAAAGACCTCGATCTCAATTTTGTGTTTCGCCTGCAAAGAAATTGGTTCAAAGATCTCATCACACAAATTGAGAGGGATTGTGCGTTTTTGGAAGCTGAAGGAATTATGGATTACAGTCTTTTGGTCGGCGTTCATTTTCGTGATGATAATACTTGTGACAAAATGGGATTATCACCATTTTTTTTGCGCACTGGAAAGCATGACTCTTATCAGAGTGAAAAGTTTATGCGTGGTTATCGCTTCCTTGAAGCAGAGCTACAAGACAGGGATAGAGTCAAATCTGGCCGGAAATCATTGATTAGGTTAGGAGCAAATATGCCAGCAAGAGCAGAGCGCATGGCTCGGAGGAGTGATTTTGACCAATACACCAGTCTTGGGATGAGCCATTTTACTCCTTGTCGCATTGGGGAGACCTATGATGTTGTTCTATATTTTGGGATTATAGACATTTTGCAAGATTACGACATCAGCAAGAAGCTGGAGCATGCATACAAGTCACTGCAGGTTGATCCTTCATCAATCTCAGCCGTTGATCCAAAGCTTTACTCGAAGAGGTTTCGTGATTTCTTGGGGAGAATATTCAGTGAGGACCGGTAG
Protein sequence

>Msa0509960

MRQSLLSNHNNTSSSDSQPPVTTTGRTRSHFSSRKISPTSITIEFEKTKRTAKKHLPNGDSYMGTFSGNNTPNGSGKYKWNDGCIYEGEWKRGKASGNGKFSWPSGSIYEGEFKLGKMEGSGTFTGSDGDIYSGSWSSDRKNGYGKKRYGNGDYYEGWWKKNVQEGKGRYVWKNGNEYIGEWKNGVINGRGTLVWLNGNRYEGEWENGVPKGQGVFTWPDGSCYVGNWNNNNNDFQSSLLNGSFYPGDDFAVTMRKRCFVEGGKDFGKICIWESDGEKGDITCDIVDNVSVLNRIGSESVSDPKEIKQFRRNSGCFVSEVKRPGETICKGHKNYDLMLNLQLGIRHSVGKEASISRELIPSDFDLKEKFWTRFPSEGSKITPPHQSMEFRWKDYCPMVFRQLRKRFQVDPADYMLAICGNAALRELSSPGKSGSFFYLTQDDRFMIKTVKKSEVKVLIRMLRSYYEHVSQYEDSLVTKFYGVHCVKPIGGQKTRFIVMGNLFCSEYPIHRRFDLKGSSHGRTTDKTEDEIDETTTLKDLDLNFVFRLQRNWFKDLITQIERDCAFLEAEGIMDYSLLVGVHFRDDNTCDKMGLSPFFLRTGKHDSYQSEKFMRGYRFLEAELQDRDRVKSGRKSLIRLGANMPARAERMARRSDFDQYTSLGMSHFTPCRIGETYDVVLYFGIIDILQDYDISKKLEHAYKSLQVDPSSISAVDPKLYSKRFRDFLGRIFSEDR*