AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0437700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0437700 MtrunA17_Chr3g0115111 98.229 734 11 1 1 734 1 732 0.0 1492
Msa0437700 MtrunA17_Chr5g0424301 74.176 728 156 6 15 733 28 732 0.0 1092
Msa0437700 MtrunA17_Chr3g0131001 61.497 748 231 11 1 734 1 705 0.0 868
Msa0437700 MtrunA17_Chr8g0385201 59.494 711 219 10 38 734 12 667 0.0 827
Msa0437700 MtrunA17_Chr3g0082501 53.186 722 278 14 52 733 59 760 0.0 692
Msa0437700 MtrunA17_Chr8g0353121 50.811 740 300 12 37 733 32 750 0.0 685
Msa0437700 MtrunA17_Chr1g0171491 49.202 752 298 11 52 733 56 793 0.0 662
Msa0437700 MtrunA17_Chr1g0180261 41.657 845 339 18 15 733 2 818 0.0 571
Msa0437700 MtrunA17_Chr8g0380791 38.697 783 367 18 45 732 1 765 6.94e-174 517
Msa0437700 MtrunA17_Chr7g0256301 61.244 418 135 8 321 733 396 791 7.55e-168 503
Msa0437700 MtrunA17_Chr7g0256301 54.271 199 89 2 51 249 65 261 1.30e-62 224
Msa0437700 MtrunA17_Chr4g0059911 36.441 236 133 6 44 273 40 264 3.13e-33 132
Msa0437700 MtrunA17_Chr4g0059911 39.583 192 112 3 59 247 11 201 9.48e-32 127
Msa0437700 MtrunA17_Chr8g0377671 33.202 253 120 4 44 248 7 258 1.23e-31 125
Msa0437700 MtrunA17_Chr8g0377671 32.143 196 130 2 23 216 76 270 1.54e-25 107
Msa0437700 MtrunA17_Chr2g0316611 36.190 210 131 2 41 248 20 228 9.34e-31 124
Msa0437700 MtrunA17_Chr2g0316611 36.406 217 133 3 36 248 151 366 9.20e-29 119
Msa0437700 MtrunA17_Chr2g0316611 34.673 199 125 2 34 228 78 275 4.28e-24 105
Msa0437700 MtrunA17_Chr2g0316611 39.216 153 88 2 33 181 215 366 2.74e-21 96.7
Msa0437700 MtrunA17_Chr8g0382971 38.372 172 105 1 57 228 25 195 1.14e-30 124
Msa0437700 MtrunA17_Chr8g0382971 34.135 208 133 3 43 248 58 263 1.34e-27 115
Msa0437700 MtrunA17_Chr8g0382971 36.913 149 91 1 106 254 27 172 6.85e-22 98.2
Msa0437700 MtrunA17_Chr8g0382971 37.278 169 101 2 57 221 117 284 1.51e-21 97.1
Msa0437700 MtrunA17_Chr6g0467061 39.106 179 108 1 50 228 12 189 1.02e-29 120
Msa0437700 MtrunA17_Chr6g0467061 32.653 245 135 5 33 248 60 303 2.28e-27 114
Msa0437700 MtrunA17_Chr6g0467061 37.791 172 106 1 57 228 157 327 4.04e-23 101
Msa0437700 MtrunA17_Chr6g0467061 38.129 139 81 2 33 167 198 335 1.80e-15 78.6
Msa0437700 MtrunA17_Chr2g0316631 35.849 212 133 2 41 250 20 230 2.00e-29 119
Msa0437700 MtrunA17_Chr2g0316631 36.683 199 121 3 34 228 78 275 1.72e-28 116
Msa0437700 MtrunA17_Chr2g0316631 31.818 176 92 4 34 205 147 298 3.80e-17 83.2
Msa0437700 MtrunA17_Chr8g0377191 36.181 199 103 2 53 228 8 205 4.74e-29 115
Msa0437700 MtrunA17_Chr8g0377191 35.570 149 96 0 82 230 13 161 1.94e-19 87.4
Msa0437700 MtrunA17_Chr8g0377191 33.108 148 97 1 102 247 10 157 5.21e-17 80.5
Msa0437700 MtrunA17_Chr4g0055371 36.416 173 109 1 58 230 173 344 6.90e-27 114
Msa0437700 MtrunA17_Chr4g0055371 37.931 116 72 0 73 188 233 348 3.26e-18 87.8
Msa0437700 MtrunA17_Chr4g0055371 33.333 126 84 0 103 228 171 296 8.12e-15 77.4
Msa0437700 MtrunA17_Chr7g0233351 34.673 199 127 2 58 256 193 388 9.76e-27 114
Msa0437700 MtrunA17_Chr8g0377211 39.437 142 84 2 53 194 16 155 3.27e-25 102
Msa0437700 MtrunA17_Chr8g0377211 39.394 132 80 0 85 216 23 154 8.15e-24 99.0
Msa0437700 MtrunA17_Chr8g0377211 37.097 124 78 0 105 228 20 143 2.83e-17 80.1
Msa0437700 MtrunA17_Chr8g0377211 39.167 120 71 1 131 248 23 142 3.49e-17 79.7
Msa0437700 MtrunA17_Chr5g0424111 37.912 182 110 2 58 239 198 376 1.32e-24 107
Msa0437700 MtrunA17_Chr5g0424111 34.000 150 99 0 80 229 196 345 2.77e-17 85.1
Msa0437700 MtrunA17_Chr8g0336161 34.071 226 143 2 13 238 158 377 1.67e-24 107
Msa0437700 MtrunA17_Chr3g0114791 34.328 201 130 2 32 232 161 359 4.29e-24 105
Msa0437700 MtrunA17_Chr8g0377221 32.314 229 112 4 56 246 4 227 5.22e-23 99.8
Msa0437700 MtrunA17_Chr8g0385241 34.826 201 95 3 64 228 13 213 4.79e-21 96.7
Msa0437700 MtrunA17_Chr8g0385241 29.717 212 123 4 56 248 124 328 1.36e-19 92.0
Msa0437700 MtrunA17_Chr8g0385241 29.386 228 123 4 57 250 56 279 7.79e-18 86.7
Msa0437700 MtrunA17_Chr8g0385241 33.121 157 104 1 73 228 173 329 3.91e-16 81.6
Msa0437700 MtrunA17_Chr8g0385241 32.121 165 102 1 80 234 9 173 9.58e-15 77.4
Msa0437700 MtrunA17_Chr8g0385241 30.247 162 111 2 59 219 183 343 2.16e-13 73.2
Msa0437700 MtrunA17_Chr8g0385241 30.216 139 97 0 57 195 204 342 2.73e-12 69.7
Msa0437700 MtrunA17_Chr8g0383331 32.143 168 98 3 101 264 1 156 3.74e-19 85.5
Msa0437700 MtrunA17_Chr8g0383331 32.653 147 98 1 57 203 4 149 1.43e-17 80.9
Msa0437700 MtrunA17_Chr8g0383331 32.653 147 99 0 80 226 3 149 3.15e-17 79.7
Msa0437700 MtrunA17_Chr5g0398011 41.525 118 68 1 55 172 33 149 5.02e-19 84.3
Msa0437700 MtrunA17_Chr5g0398011 33.621 116 77 0 104 219 35 150 1.17e-13 68.9
Msa0437700 MtrunA17_Chr5g0398011 31.579 114 78 0 82 195 36 149 9.62e-12 63.5
Msa0437700 MtrunA17_Chr5g0398021 44.554 101 55 1 57 157 13 112 9.23e-18 80.9
Msa0437700 MtrunA17_Chr5g0398021 39.423 104 63 0 123 226 9 112 1.06e-14 72.4
Msa0437700 MtrunA17_Chr5g0398021 36.364 99 63 0 106 204 15 113 4.67e-13 67.4
Msa0437700 MtrunA17_Chr5g0398021 33.333 99 64 1 151 247 14 112 5.85e-11 61.6
Msa0437700 MtrunA17_Chr8g0383551 28.571 238 110 9 62 248 33 261 2.50e-16 81.6
Msa0437700 MtrunA17_Chr8g0383551 27.607 163 110 4 68 222 129 291 1.30e-11 67.0
Msa0437700 MtrunA17_Chr1g0210831 35.200 125 79 2 86 209 618 741 4.23e-14 76.3
Msa0437700 MtrunA17_Chr1g0210831 30.400 125 87 0 106 230 615 739 7.06e-12 68.9
Msa0437700 MtrunA17_Chr4g0069951 32.927 164 94 7 430 580 1555 1715 4.98e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0437700 AT1G77740.2 70.914 722 183 6 22 733 49 753 0.0 1041
Msa0437700 AT1G77740.1 70.914 722 183 6 22 733 49 753 0.0 1041
Msa0437700 AT1G21980.1 69.819 719 194 6 22 733 49 751 0.0 1021
Msa0437700 AT2G26420.2 55.510 726 268 15 32 734 26 719 0.0 764
Msa0437700 AT2G26420.3 55.510 726 268 15 32 734 26 719 0.0 764
Msa0437700 AT2G26420.1 55.034 725 259 14 32 734 26 705 0.0 757
Msa0437700 AT3G07960.1 53.857 713 278 13 52 733 22 714 0.0 725
Msa0437700 AT3G07960.1 35.514 107 67 1 144 248 21 127 2.76e-14 77.0
Msa0437700 AT3G56960.2 51.226 734 284 14 52 733 67 778 0.0 723
Msa0437700 AT3G56960.1 51.226 734 284 14 52 733 67 778 0.0 723
Msa0437700 AT2G41210.1 51.293 735 277 14 52 733 65 771 0.0 709
Msa0437700 AT3G07960.3 55.062 563 221 9 52 584 22 582 0.0 607
Msa0437700 AT3G07960.3 35.514 107 67 1 144 248 21 127 5.77e-14 75.9
Msa0437700 AT3G07960.2 55.062 563 221 9 52 584 22 582 0.0 607
Msa0437700 AT3G07960.2 35.514 107 67 1 144 248 21 127 7.06e-14 75.5
Msa0437700 AT3G07960.4 55.062 563 221 9 52 584 22 582 0.0 607
Msa0437700 AT3G07960.4 35.514 107 67 1 144 248 21 127 7.06e-14 75.5
Msa0437700 AT3G09920.3 40.814 811 347 19 29 733 29 812 0.0 559
Msa0437700 AT3G09920.4 40.814 811 347 19 29 733 29 812 0.0 559
Msa0437700 AT3G09920.2 40.814 811 347 19 29 733 29 812 0.0 559
Msa0437700 AT3G09920.1 40.814 811 347 19 29 733 29 812 0.0 559
Msa0437700 AT1G10900.2 41.146 768 352 14 50 734 4 754 0.0 545
Msa0437700 AT1G10900.1 41.146 768 352 14 50 734 4 754 0.0 545
Msa0437700 AT1G10900.3 41.146 768 352 14 50 734 4 754 0.0 545
Msa0437700 AT1G60890.1 38.608 790 352 18 50 732 4 767 6.61e-171 510
Msa0437700 AT1G60890.2 38.579 788 351 18 52 732 18 779 5.97e-170 508
Msa0437700 AT1G01460.1 38.263 426 210 10 355 733 3 422 9.66e-79 259
Msa0437700 AT4G01190.1 36.432 398 195 6 372 730 12 390 1.03e-73 244
Msa0437700 AT4G01190.3 36.432 398 195 6 372 730 22 400 1.79e-73 244
Msa0437700 AT4G01190.2 36.432 398 195 6 372 730 22 400 1.79e-73 244
Msa0437700 AT2G35170.1 34.518 197 125 2 60 256 229 421 1.23e-26 114
Msa0437700 AT4G17080.1 35.260 173 111 1 58 230 258 429 4.43e-25 110
Msa0437700 AT4G17080.1 38.793 116 71 0 73 188 318 433 6.57e-21 97.4
Msa0437700 AT4G17080.1 34.899 149 95 1 80 228 235 381 3.67e-17 85.9
Msa0437700 AT1G77660.1 34.715 193 122 2 43 232 161 352 4.45e-24 106
Msa0437700 AT1G21920.2 35.260 173 111 1 58 230 175 346 8.33e-23 101
Msa0437700 AT1G21920.2 38.261 115 71 0 73 187 235 349 1.23e-15 79.7
Msa0437700 AT1G21920.2 30.667 150 81 1 103 229 173 322 1.62e-12 70.1
Msa0437700 AT1G21920.2 36.792 106 65 2 145 248 169 274 8.98e-11 64.7
Msa0437700 AT1G21920.1 35.260 173 111 1 58 230 175 346 1.13e-22 101
Msa0437700 AT1G21920.1 36.434 129 81 1 59 187 222 349 1.51e-15 80.1
Msa0437700 AT1G21920.1 30.667 150 81 1 103 229 173 322 1.60e-12 70.5
Msa0437700 AT1G21920.1 36.792 106 65 2 145 248 169 274 9.14e-11 65.1
Msa0437700 AT1G34260.2 32.161 199 111 7 399 580 1192 1383 1.24e-14 79.0
Msa0437700 AT1G34260.1 32.161 199 111 7 399 580 1192 1383 1.24e-14 79.0
Msa0437700 AT1G34260.3 32.161 199 111 7 399 580 1192 1383 1.24e-14 79.0
Msa0437700 AT1G34260.4 32.161 199 111 7 399 580 952 1143 1.39e-14 78.6
Msa0437700 AT1G75010.1 33.594 128 83 2 83 209 604 730 6.70e-14 75.9
Msa0437700 AT1G75010.1 28.000 125 90 0 106 230 604 728 6.08e-11 66.6

Find 220 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGATGTTGTTCTATATTT+TGG 0.034831 3_3:+1638458 Msa0437700:CDS
GTTGAAGGTGGAAAGGATTT+TGG 0.125060 3_3:+1635882 Msa0437700:CDS
ATGGCAAAATCTTCAAAATT+TGG 0.147602 3_3:-1638820 None:intergenic
CGAGTTTAAGTTAGGTAAAA+TGG 0.171327 3_3:+1635437 Msa0437700:CDS
GCCATGCGCTCTGCTCTTGC+TGG 0.224688 3_3:-1638362 None:intergenic
TTAATCTTCAATTGGGTATA+AGG 0.226807 3_3:+1636117 Msa0437700:CDS
CAATAGACTGTTTGATTAAC+AGG 0.251542 3_3:+1638769 Msa0437700:three_prime_UTR
TCGAAACTGCTTAATCTCTT+TGG 0.256358 3_3:-1636012 None:intergenic
TCACTTGTGACAAAATTCTA+TGG 0.265062 3_3:+1636934 Msa0437700:CDS
ACAATTGAGGAAGCGATTTC+AGG 0.271948 3_3:+1636613 Msa0437700:CDS
CAATTTCGAGCTTTCTTTCC+TGG 0.275413 3_3:-1638719 None:intergenic
TTGATTTGAAGGAGAAGTTT+TGG 0.277331 3_3:+1636291 Msa0437700:CDS
CTTTGAACCAATTTCTTTGC+AGG 0.287736 3_3:-1637242 None:intergenic
TGTTTCGCCTGCAAAGAAAT+TGG 0.293239 3_3:+1637235 Msa0437700:CDS
CACTTTCCTCTCCTCTTTGC+CGG 0.293574 3_3:+1635045 Msa0437700:five_prime_UTR
GAAGAGGTTTCGTGATTTCT+TGG 0.294492 3_3:+1638592 Msa0437700:CDS
GGAAAATTCTCGTGGCCTTC+AGG 0.294946 3_3:+1635399 Msa0437700:CDS
GTATCCGCGCATTTGGATTC+CGG 0.295358 3_3:-1639030 None:intergenic
AAGCAGTTTCGACGGAATTC+TGG 0.296681 3_3:+1636023 Msa0437700:CDS
TTTGGAAGCTGAAGGAATTA+TGG 0.301969 3_3:+1637393 Msa0437700:CDS
TGATAATACTTGTGACAAAA+TGG 0.310651 3_3:+1637450 Msa0437700:CDS
AATTATGGATTACAGTCTTT+TGG 0.313536 3_3:+1637408 Msa0437700:CDS
AAGAGGTTTCGTGATTTCTT+GGG 0.322150 3_3:+1638593 Msa0437700:CDS
CGAAACTGCTTAATCTCTTT+GGG 0.329372 3_3:-1636011 None:intergenic
CCTTCAGTGAACCATCATTA+TGG 0.332152 3_3:-1638839 None:intergenic
TCTTATGCTTAATCTTCAAT+TGG 0.334042 3_3:+1636109 Msa0437700:CDS
GTTTCAGGAAATCATTGATT+AGG 0.336752 3_3:+1638324 Msa0437700:intron
CCTTCAAGTCAAATCGTCTA+TGG 0.339301 3_3:-1637128 None:intergenic
GTTGGGATGTGTAGATTCTT+TGG 0.344943 3_3:+1638932 Msa0437700:three_prime_UTR
TGGGAATCTGATGGTGAAAA+AGG 0.345497 3_3:+1635918 Msa0437700:CDS
TCCGTTTGGTGTGTTGTTGC+CGG 0.352531 3_3:-1635304 None:intergenic
TTTCTGTCTTTCCATTGGTT+GGG 0.355867 3_3:+1638915 Msa0437700:three_prime_UTR
CGAGGAAAAGCTTCCGGAAA+TGG 0.359329 3_3:+1635378 Msa0437700:CDS
GGAACGCTTGTTTGGTTGAA+TGG 0.360362 3_3:+1635675 Msa0437700:CDS
AAGGAAAAGGGAGGTATGTT+TGG 0.362141 3_3:+1635598 Msa0437700:CDS
TAATATCATATTCTACTTTG+TGG 0.362188 3_3:-1638958 None:intergenic
CGAACATGTTTCTCAATATG+AGG 0.363324 3_3:+1636909 Msa0437700:CDS
GTAAACACACCTTGCCCTTT+CGG 0.365516 3_3:-1635732 None:intergenic
CAATGCGACAAGGAGTAAAA+TGG 0.367842 3_3:-1638427 None:intergenic
CTAACTTATAGGTACTTATT+CGG 0.368553 3_3:+1636869 Msa0437700:intron
AATTCGATTGTTATGCTTGT+TGG 0.369321 3_3:-1635216 None:intergenic
TTCAATCTTCTTTATTGAAT+GGG 0.369480 3_3:+1635808 Msa0437700:CDS
TTTCAATCTTCTTTATTGAA+TGG 0.371669 3_3:+1635807 Msa0437700:CDS
TAGTGATTGGTGCTATTTAC+TGG 0.377186 3_3:-1634829 None:intergenic
ATAATGTATCGGTGTTGAAT+AGG 0.380784 3_3:+1635964 Msa0437700:CDS
GAGATATTTACAGTGGTTCA+TGG 0.381217 3_3:+1635490 Msa0437700:CDS
CTCGAAATTGATTCGGGTGT+TGG 0.382501 3_3:+1638732 Msa0437700:three_prime_UTR
GAAGTTGCTATGTTGGGAAT+TGG 0.382649 3_3:+1635766 Msa0437700:CDS
TCTTACATGGGAACCTTCTC+CGG 0.385552 3_3:+1635285 Msa0437700:CDS
TGTCTTGTAGCTCTGCTTCA+AGG 0.388811 3_3:-1637642 None:intergenic
ACGGAAGAGGAACGCTTGTT+TGG 0.389884 3_3:+1635667 Msa0437700:CDS
AAGAATGTTCAAGAAGGAAA+AGG 0.390966 3_3:+1635585 Msa0437700:CDS
AAGTAAAGTATCCGCGCATT+TGG 0.391357 3_3:-1639037 None:intergenic
CTCAGGGAGCTTTCATCTCC+TGG 0.397244 3_3:+1636680 Msa0437700:CDS
AACCTCTTCGAGTAAAGCTT+TGG 0.403371 3_3:-1638578 None:intergenic
TACGAAGGCGAGTTTAAGTT+AGG 0.409763 3_3:+1635429 Msa0437700:CDS
AAGGGCAAGGTGTGTTTACT+TGG 0.414183 3_3:+1635736 Msa0437700:CDS
TGCTGAAGTGTGACCGGGTA+CGG 0.416039 3_3:-1635179 None:intergenic
TGATCATAAATCTGTCATCT+TGG 0.417508 3_3:-1636730 None:intergenic
GATTACATGTTAGCTATTTG+TGG 0.418084 3_3:+1636647 Msa0437700:CDS
GATTGCCCATCACGATGAAC+CGG 0.420765 3_3:-1637083 None:intergenic
AAGAAAGCTCGAAATTGATT+CGG 0.421732 3_3:+1638725 Msa0437700:three_prime_UTR
TTAGGTAAAATGGAAGGTTC+TGG 0.422048 3_3:+1635447 Msa0437700:CDS
AGGAAATCATTGATTAGGTT+AGG 0.422069 3_3:+1638329 Msa0437700:intron
TATGAAGGTGAATGGGAAAA+TGG 0.423372 3_3:+1635705 Msa0437700:CDS
ATTGATTCGGGTGTTGGAAT+TGG 0.431077 3_3:+1638738 Msa0437700:three_prime_UTR
GTACGGCCGGTGGTAGTAAC+CGG 0.434456 3_3:-1635162 None:intergenic
TGGAAACGAGGAAAAGCTTC+CGG 0.437406 3_3:+1635372 Msa0437700:CDS
CATACCTTCTGGCCTCCAAT+TGG 0.438269 3_3:-1636973 None:intergenic
TTGACCAATACACCAGTCTT+GGG 0.443312 3_3:+1638399 Msa0437700:CDS
ATTGAGATCGAGGTCTTTGA+GGG 0.447025 3_3:-1637208 None:intergenic
ACCGGGTGAAACTATATGTA+AGG 0.448524 3_3:+1636070 Msa0437700:CDS
ACGGAGATTATTATGAAGGT+TGG 0.448575 3_3:+1635556 Msa0437700:CDS
CTTATGCTTAATCTTCAATT+GGG 0.449000 3_3:+1636110 Msa0437700:CDS
TCCGGCTGCTGAAGTGTGAC+CGG 0.449099 3_3:-1635185 None:intergenic
AGAAAGCTCGAAATTGATTC+GGG 0.449961 3_3:+1638726 Msa0437700:three_prime_UTR
TTTGACCAATACACCAGTCT+TGG 0.451828 3_3:+1638398 Msa0437700:CDS
AATTGAGATCGAGGTCTTTG+AGG 0.452408 3_3:-1637209 None:intergenic
AGAATGTTCAAGAAGGAAAA+GGG 0.454701 3_3:+1635586 Msa0437700:CDS
GATCATAAATCTGTCATCTT+GGG 0.456803 3_3:-1636729 None:intergenic
TGGAGTAATCTAGTTATTGA+TGG 0.457170 3_3:-1634907 None:intergenic
CACTTGTGACAAAATTCTAT+GGG 0.459389 3_3:+1636935 Msa0437700:CDS
AATTGATCTGAATAATATCC+AGG 0.461248 3_3:+1638701 Msa0437700:three_prime_UTR
GTACATTGTGTCAAACCAAT+TGG 0.461773 3_3:+1636958 Msa0437700:CDS
TGGACTAGGTTTCCTTCTGA+AGG 0.464564 3_3:+1636311 Msa0437700:CDS
TCATCCCAAGACTGGTGTAT+TGG 0.465016 3_3:-1638403 None:intergenic
ACCCAACGGTGATTCTTACA+TGG 0.468531 3_3:+1635272 Msa0437700:CDS
TGTTTCTGAGGTTAAGAGAC+CGG 0.469082 3_3:+1636052 Msa0437700:CDS
GGAATCGTTATGAAGGTGAA+TGG 0.469561 3_3:+1635697 Msa0437700:CDS
GGTAACGGAGATTATTATGA+AGG 0.472824 3_3:+1635552 Msa0437700:CDS
TGGTGTGTTGTTGCCGGAGA+AGG 0.473091 3_3:-1635298 None:intergenic
TGGAAGAACGGTGTTATTAA+CGG 0.473795 3_3:+1635648 Msa0437700:CDS
GAACGCTTGTTTGGTTGAAT+GGG 0.476408 3_3:+1635676 Msa0437700:CDS
AACAACACACCAAACGGATC+AGG 0.483095 3_3:+1635309 Msa0437700:CDS
CCATAGACGATTTGACTTGA+AGG 0.483414 3_3:+1637128 Msa0437700:CDS
AGAGAGAGGTGCATAGTGAT+TGG 0.484279 3_3:-1634842 None:intergenic
TTTGTGGAAATGCTGCCCTC+AGG 0.484497 3_3:+1636663 Msa0437700:CDS
AAAATATAGAACAACATCAT+AGG 0.485216 3_3:-1638456 None:intergenic
AGGAGAGGAAAGTGTTGTGT+TGG 0.487465 3_3:-1635036 None:intergenic
GACAGGGATAGAGTCAAATC+TGG 0.491174 3_3:+1637661 Msa0437700:CDS
GTAATCTAGTTATTGATGGC+TGG 0.491561 3_3:-1634903 None:intergenic
CAAGAGCAGAGCGCATGGCT+CGG 0.492297 3_3:+1638366 Msa0437700:CDS
GAGATTATTATGAAGGTTGG+TGG 0.493359 3_3:+1635559 Msa0437700:CDS
GTTGTATCTACGAAGGTGAA+TGG 0.494101 3_3:+1635352 Msa0437700:CDS
CTTTCATCTCCTGGCAAAAG+TGG 0.494331 3_3:+1636689 Msa0437700:CDS
TCCGGCAACAACACACCAAA+CGG 0.494538 3_3:+1635303 Msa0437700:CDS
ACTGTTTGATTAACAGGCTA+TGG 0.494837 3_3:+1638775 Msa0437700:three_prime_UTR
GTATCGGTGTTGAATAGGAT+TGG 0.499415 3_3:+1635969 Msa0437700:CDS
CGAGTAAAGCTTTGGATCAA+CGG 0.499572 3_3:-1638570 None:intergenic
ACGGATCAGGAAAATACAAA+TGG 0.500009 3_3:+1635322 Msa0437700:CDS
CCGGCTGCTGAAGTGTGACC+GGG 0.500586 3_3:-1635184 None:intergenic
TTGGAAGGATTACTGCCCTA+TGG 0.500847 3_3:+1636373 Msa0437700:CDS
ATCCAAAGCTTTACTCGAAG+AGG 0.501514 3_3:+1638576 Msa0437700:CDS
TTACGACATCAGCAAGAAGC+TGG 0.503669 3_3:+1638502 Msa0437700:CDS
GTTCTGCTTTGTTTCTACTT+CGG 0.504257 3_3:-1634947 None:intergenic
AAATGCGCGGATACTTTACT+TGG 0.507314 3_3:+1639039 Msa0437700:three_prime_UTR
CGGCTGTGAGTCTGAGGAGG+AGG 0.510524 3_3:-1635139 None:intergenic
ATCAATCGATGGAGTTCCGT+TGG 0.514044 3_3:+1636354 Msa0437700:CDS
CCAACATAGCAACTTCCATC+AGG 0.514644 3_3:-1635759 None:intergenic
AAGTCAAATCGTCTATGGAT+TGG 0.518884 3_3:-1637123 None:intergenic
AACGGTGTTATTAACGGAAG+AGG 0.520673 3_3:+1635654 Msa0437700:CDS
CTGATGGAAGTTGCTATGTT+GGG 0.522196 3_3:+1635760 Msa0437700:CDS
GGAATGAGTATATTGGTGAA+TGG 0.523321 3_3:+1635628 Msa0437700:CDS
TGTTTCATACTCGATGCTAC+CGG 0.523766 3_3:-1638634 None:intergenic
CCCGGTCACACTTCAGCAGC+CGG 0.523983 3_3:+1635184 Msa0437700:CDS
GGAAAGAAACGTTACGGTAA+CGG 0.525703 3_3:+1635537 Msa0437700:CDS
GATAATACTTGTGACAAAAT+GGG 0.528057 3_3:+1637451 Msa0437700:CDS
ATCGATGGAGTTCCGTTGGA+AGG 0.528474 3_3:+1636358 Msa0437700:CDS
CCTGATGGAAGTTGCTATGT+TGG 0.529482 3_3:+1635759 Msa0437700:CDS
TTGAAGCAGAGCTACAAGAC+AGG 0.533588 3_3:+1637644 Msa0437700:CDS
GTTGGTAATAACAGAATGAA+AGG 0.533700 3_3:-1635018 None:intergenic
CTGAGGAGGAGGTGTTGTTG+TGG 0.534300 3_3:-1635128 None:intergenic
TTGTGGAAATGCTGCCCTCA+GGG 0.535698 3_3:+1636664 Msa0437700:CDS
CCCAACGGTGATTCTTACAT+GGG 0.537955 3_3:+1635273 Msa0437700:CDS
GAATCGTTATGAAGGTGAAT+GGG 0.538035 3_3:+1635698 Msa0437700:CDS
CATAGACGATTTGACTTGAA+GGG 0.539532 3_3:+1637129 Msa0437700:CDS
TGTATTTGTAGGCACTCTGT+TGG 0.540782 3_3:+1636227 Msa0437700:intron
GGTGTGTTTACTTGGCCTGA+TGG 0.542730 3_3:+1635744 Msa0437700:CDS
GGGAAAATGGTGTTCCGAAA+GGG 0.544352 3_3:+1635718 Msa0437700:CDS
TTGTAGGCACTCTGTTGGAA+AGG 0.546723 3_3:+1636232 Msa0437700:intron
ATAGCTAACATGTAATCAGC+AGG 0.548324 3_3:-1636641 None:intergenic
CTCCTCAGACTCACAGCCGC+CGG 0.550423 3_3:+1635143 Msa0437700:CDS
CCCTTACATATAGTTTCACC+CGG 0.553878 3_3:-1636071 None:intergenic
TCAACGGCTGAGATTGATGA+AGG 0.553947 3_3:-1638554 None:intergenic
CAGCCGCCGGTTACTACCAC+CGG 0.555866 3_3:+1635156 Msa0437700:CDS
ACAGACCCGGTTCATCGTGA+TGG 0.557962 3_3:+1637077 Msa0437700:intron
CTTCAGTCTTATCTGTCGTA+CGG 0.558988 3_3:-1637164 None:intergenic
AGCTCAGAAAAGAAGTCAGA+AGG 0.561565 3_3:-1634878 None:intergenic
CCCATGTAAGAATCACCGTT+GGG 0.561567 3_3:-1635273 None:intergenic
CCATAATGATGGTTCACTGA+AGG 0.562321 3_3:+1638839 Msa0437700:three_prime_UTR
AAAATGGCTCATCCCAAGAC+TGG 0.564949 3_3:-1638411 None:intergenic
AGAGGTTTCGTGATTTCTTG+GGG 0.567121 3_3:+1638594 Msa0437700:CDS
TTACTACCACCGGCCGTACC+CGG 0.570013 3_3:+1635166 Msa0437700:CDS
GCCAGCAAGAGCAGAGCGCA+TGG 0.570278 3_3:+1638361 Msa0437700:CDS
TTTAAGTTAGGTAAAATGGA+AGG 0.570615 3_3:+1635441 Msa0437700:CDS
TTGCTGTGACAATGAGGAAG+AGG 0.570749 3_3:+1635853 Msa0437700:CDS
GACTTGAAGGGATCGTCACA+TGG 0.570790 3_3:+1637141 Msa0437700:CDS
CAGACCCGGTTCATCGTGAT+GGG 0.574346 3_3:+1637078 Msa0437700:intron
ATGATGGTTCACTGAAGGCA+AGG 0.575597 3_3:+1638844 Msa0437700:three_prime_UTR
GTGTGACCGGGTACGGCCGG+TGG 0.576629 3_3:-1635172 None:intergenic
TGGGAAAATGGTGTTCCGAA+AGG 0.578671 3_3:+1635717 Msa0437700:CDS
AACCGGCGGCTGTGAGTCTG+AGG 0.581864 3_3:-1635145 None:intergenic
AACTCCATCGATTGATGTGG+TGG 0.582178 3_3:-1636347 None:intergenic
ATTTGTATTTGGGAATCTGA+TGG 0.583123 3_3:+1635909 Msa0437700:CDS
AATCTACACATCCCAACCAA+TGG 0.584960 3_3:-1638926 None:intergenic
TCCCATGTAAGAATCACCGT+TGG 0.585589 3_3:-1635274 None:intergenic
TGATATTGTTGATAATGTAT+CGG 0.585855 3_3:+1635953 Msa0437700:CDS
ATTGAGGAAGCGATTTCAGG+TGG 0.589268 3_3:+1636616 Msa0437700:CDS
GAGCAGAGCGCATGGCTCGG+AGG 0.591132 3_3:+1638369 Msa0437700:CDS
TTGAATGGGAATCGTTATGA+AGG 0.597420 3_3:+1635690 Msa0437700:CDS
AATGGTGTTCCGAAAGGGCA+AGG 0.597645 3_3:+1635723 Msa0437700:CDS
GTTTCTGAGGTTAAGAGACC+GGG 0.597952 3_3:+1636053 Msa0437700:CDS
GAAGTGTGACCGGGTACGGC+CGG 0.598746 3_3:-1635175 None:intergenic
ATTGTCCAGACAAATTGAGA+GGG 0.600968 3_3:+1637360 Msa0437700:intron
TCCTTCAAATCAAAATCACT+CGG 0.601151 3_3:-1636281 None:intergenic
TGGAAGAAGAATGTTCAAGA+AGG 0.601723 3_3:+1635579 Msa0437700:CDS
CAAACCAATTGGAGGCCAGA+AGG 0.602903 3_3:+1636969 Msa0437700:CDS
GCATGCATACAAGTCACTGC+AGG 0.604105 3_3:+1638526 Msa0437700:CDS
GTAATCTTAGATCCTTCAGA+AGG 0.607853 3_3:-1636323 None:intergenic
CCGGGTGAAACTATATGTAA+GGG 0.608012 3_3:+1636071 Msa0437700:CDS
AATTGTCCAGACAAATTGAG+AGG 0.609484 3_3:+1637359 Msa0437700:intron
ATTGCCCATCACGATGAACC+GGG 0.610262 3_3:-1637082 None:intergenic
GGGATAGAGTCAAATCTGGC+CGG 0.612890 3_3:+1637665 Msa0437700:CDS
GGAGAATATTCAGTGAGGAC+CGG 0.614114 3_3:+1638615 Msa0437700:CDS
CCTTCAGGTTCTATTTACGA+AGG 0.614367 3_3:+1635414 Msa0437700:CDS
GGAAAATACAAATGGAACGA+TGG 0.614574 3_3:+1635330 Msa0437700:CDS
CGGCGGCTGTGAGTCTGAGG+AGG 0.620840 3_3:-1635142 None:intergenic
CATTGTGTCAAACCAATTGG+AGG 0.621598 3_3:+1636961 Msa0437700:CDS
CAGAGTGAAAAGTTTATGCG+TGG 0.622075 3_3:+1637610 Msa0437700:CDS
GTCACAGCAAAATCATCACC+AGG 0.624630 3_3:-1635840 None:intergenic
AGGAGATGAAAGCTCCCTGA+GGG 0.626112 3_3:-1636678 None:intergenic
CCTTCGTAAATAGAACCTGA+AGG 0.628853 3_3:-1635414 None:intergenic
TATATTGGTGAATGGAAGAA+CGG 0.630785 3_3:+1635636 Msa0437700:CDS
TGATGGTTCACTGAAGGCAA+GGG 0.631854 3_3:+1638845 Msa0437700:three_prime_UTR
TACGCCACCACATCAATCGA+TGG 0.633033 3_3:+1636343 Msa0437700:CDS
AAGAGATTAAGCAGTTTCGA+CGG 0.635005 3_3:+1636015 Msa0437700:CDS
CGGAACTCCATCGATTGATG+TGG 0.636137 3_3:-1636350 None:intergenic
TGATCTTTGTACATGAAAGA+TGG 0.636260 3_3:+1638868 Msa0437700:three_prime_UTR
GAAACACAAAATTGAGATCG+AGG 0.636698 3_3:-1637218 None:intergenic
GAGATCGAGGTCTTTGAGGG+TGG 0.639500 3_3:-1637205 None:intergenic
CGGGTGAAACTATATGTAAG+GGG 0.642189 3_3:+1636072 Msa0437700:CDS
CCGGAAATGGAAAATTCTCG+TGG 0.642730 3_3:+1635391 Msa0437700:CDS
AATGTTGTCATGAATCATGA+TGG 0.647937 3_3:+1638665 Msa0437700:three_prime_UTR
TGAAGCAGAGCTACAAGACA+GGG 0.650372 3_3:+1637645 Msa0437700:CDS
ATGTTCAAGAAGGAAAAGGG+AGG 0.651936 3_3:+1635589 Msa0437700:CDS
TAGCATCGAGTATGAAACAA+AGG 0.652241 3_3:+1638638 Msa0437700:exon
ACCACTGTAAATATCTCCGT+CGG 0.657482 3_3:-1635484 None:intergenic
GGTTACGGAAAGAAACGTTA+CGG 0.659807 3_3:+1635531 Msa0437700:CDS
TAGGTCTCCCCAATGCGACA+AGG 0.659959 3_3:-1638437 None:intergenic
TAGGGCAGTAATCCTTCCAA+CGG 0.670381 3_3:-1636370 None:intergenic
CGGCCGGTGGTAGTAACCGG+CGG 0.680663 3_3:-1635159 None:intergenic
TCTTTGTACATGAAAGATGG+TGG 0.688843 3_3:+1638871 Msa0437700:three_prime_UTR
AACGATGGTTGTATCTACGA+AGG 0.690640 3_3:+1635345 Msa0437700:CDS
CTTGGGGAGAATATTCAGTG+AGG 0.694230 3_3:+1638610 Msa0437700:CDS
ACTTGTGACAAAATTCTATG+GGG 0.699706 3_3:+1636936 Msa0437700:CDS
GAAACCGGAATCCAAATGCG+CGG 0.700353 3_3:+1639026 Msa0437700:three_prime_UTR
CAGGAGATGAAAGCTCCCTG+AGG 0.700563 3_3:-1636679 None:intergenic
TCCGACGGAGATATTTACAG+TGG 0.708834 3_3:+1635483 Msa0437700:CDS
TGAAAGGAAATGAATCACTG+TGG 0.718371 3_3:-1635002 None:intergenic
TACGAAGGTGAATGGAAACG+AGG 0.723760 3_3:+1635360 Msa0437700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATTATTGCTATTTTAA+GGG + chr3_3:1637008-1637027 Msa0437700:intron 10.0%
!!! TTTAAGTTGATAAAATAATT+AGG + chr3_3:1637717-1637736 Msa0437700:intron 10.0%
!!! GATAAATTATTGCTATTTTA+AGG + chr3_3:1637007-1637026 Msa0437700:intron 15.0%
!!! ATTATATTGTTTATCCTTTT+AGG + chr3_3:1637571-1637590 Msa0437700:intron 15.0%
!!! TTCTATAAAATGTTGATTTA+GGG - chr3_3:1637799-1637818 None:intergenic 15.0%
!!! ATTCTATAAAATGTTGATTT+AGG - chr3_3:1637800-1637819 None:intergenic 15.0%
!!! CAACATTTTATAGAATAATT+AGG + chr3_3:1637804-1637823 Msa0437700:intron 15.0%
!! ACATAAAAATATGAATGATT+AGG - chr3_3:1637986-1638005 None:intergenic 15.0%
!! TTATGAATGTAAAAAATGTT+AGG + chr3_3:1638978-1638997 Msa0437700:three_prime_UTR 15.0%
!!! AATCAATGCATTTTTTTTTC+CGG - chr3_3:1635067-1635086 None:intergenic 20.0%
!! TTTCAATCTTCTTTATTGAA+TGG + chr3_3:1635807-1635826 Msa0437700:CDS 20.0%
!! TTCAATCTTCTTTATTGAAT+GGG + chr3_3:1635808-1635827 Msa0437700:CDS 20.0%
!!! TGATATTGTTGATAATGTAT+CGG + chr3_3:1635953-1635972 Msa0437700:CDS 20.0%
!! CAATAATTTATCTTCAACAA+AGG - chr3_3:1636999-1637018 None:intergenic 20.0%
!! AAACAAGCAATCAATTAATT+AGG - chr3_3:1638120-1638139 None:intergenic 20.0%
!!! ATACCATCTCTATATTTTAT+TGG + chr3_3:1638156-1638175 Msa0437700:intron 20.0%
!!! TAAATTTTGATGTGTTAAGT+AGG + chr3_3:1638292-1638311 Msa0437700:intron 20.0%
!! AAAATATAGAACAACATCAT+AGG - chr3_3:1638459-1638478 None:intergenic 20.0%
!!! TATGATGTTGTTCTATATTT+TGG + chr3_3:1638458-1638477 Msa0437700:CDS 20.0%
!!! ATGATGTTGTTCTATATTTT+GGG + chr3_3:1638459-1638478 Msa0437700:CDS 20.0%
!! TAATATCATATTCTACTTTG+TGG - chr3_3:1638961-1638980 None:intergenic 20.0%
!! AATGTAAAAAATGTTAGGTA+GGG + chr3_3:1638983-1639002 Msa0437700:three_prime_UTR 20.0%
!! TTTAAGTTAGGTAAAATGGA+AGG + chr3_3:1635441-1635460 Msa0437700:CDS 25.0%
!!! ATTTTGGGAAGATTTGTATT+TGG + chr3_3:1635898-1635917 Msa0437700:CDS 25.0%
!!! TTTTGGGAAGATTTGTATTT+GGG + chr3_3:1635899-1635918 Msa0437700:CDS 25.0%
! TCTTATGCTTAATCTTCAAT+TGG + chr3_3:1636109-1636128 Msa0437700:CDS 25.0%
! CTTATGCTTAATCTTCAATT+GGG + chr3_3:1636110-1636129 Msa0437700:CDS 25.0%
! TTAATCTTCAATTGGGTATA+AGG + chr3_3:1636117-1636136 Msa0437700:CDS 25.0%
!! TTTGTAATTTGCATTAGTTC+TGG + chr3_3:1636183-1636202 Msa0437700:intron 25.0%
!! TTCTGGATTTAAGGAATTTT+TGG + chr3_3:1636200-1636219 Msa0437700:intron 25.0%
!!! TTTTTGGTTTGTGTATTTGT+AGG + chr3_3:1636216-1636235 Msa0437700:intron 25.0%
! AATGATTAACATTAACTACC+AGG - chr3_3:1636427-1636446 None:intergenic 25.0%
! TTATTCTCCTTGTGTTAATT+AGG - chr3_3:1636572-1636591 None:intergenic 25.0%
!! TTTTGAATTTCAGACAATTG+AGG + chr3_3:1636600-1636619 Msa0437700:intron 25.0%
! CTAACTTATAGGTACTTATT+CGG + chr3_3:1636869-1636888 Msa0437700:intron 25.0%
!!! AATTATGGATTACAGTCTTT+TGG + chr3_3:1637408-1637427 Msa0437700:CDS 25.0%
! TGATAATACTTGTGACAAAA+TGG + chr3_3:1637450-1637469 Msa0437700:CDS 25.0%
! GATAATACTTGTGACAAAAT+GGG + chr3_3:1637451-1637470 Msa0437700:CDS 25.0%
!! TTTTATGTTGACGACATTAA+TGG + chr3_3:1637998-1638017 Msa0437700:intron 25.0%
! TTGAATTATCTTTAGCAAGT+AGG + chr3_3:1638038-1638057 Msa0437700:intron 25.0%
! ATTAATTGATTGCTTGTTTC+TGG + chr3_3:1638121-1638140 Msa0437700:intron 25.0%
! TTGCCAATAAAATATAGAGA+TGG - chr3_3:1638162-1638181 None:intergenic 25.0%
! CTTTATAAATGCTGAAGTAT+AGG - chr3_3:1638196-1638215 None:intergenic 25.0%
! CAGCATTTATAAAGTAGTTA+TGG + chr3_3:1638202-1638221 Msa0437700:intron 25.0%
! TATAAAGTAGTTATGGTTGT+TGG + chr3_3:1638209-1638228 Msa0437700:intron 25.0%
! AATTGATCTGAATAATATCC+AGG + chr3_3:1638701-1638720 Msa0437700:three_prime_UTR 25.0%
!!! GCATTGATAATCTTTTTCTA+TGG + chr3_3:1638797-1638816 Msa0437700:three_prime_UTR 25.0%
! ATGGCAAAATCTTCAAAATT+TGG - chr3_3:1638823-1638842 None:intergenic 25.0%
! TGGAAAGACAGAAAAAAAAA+AGG - chr3_3:1638909-1638928 None:intergenic 25.0%
!!! TTTTTTTTCTGTCTTTCCAT+TGG + chr3_3:1638910-1638929 Msa0437700:three_prime_UTR 25.0%
! GAATGTAAAAAATGTTAGGT+AGG + chr3_3:1638982-1639001 Msa0437700:three_prime_UTR 25.0%
! ATGTAAAAAATGTTAGGTAG+GGG + chr3_3:1638984-1639003 Msa0437700:three_prime_UTR 25.0%
!! ATGAAAATGTTTTCAGAAAC+CGG + chr3_3:1639011-1639030 Msa0437700:three_prime_UTR 25.0%
TGGAGTAATCTAGTTATTGA+TGG - chr3_3:1634910-1634929 None:intergenic 30.0%
CTTCGGAGAAAAATAAAAGT+TGG - chr3_3:1634933-1634952 None:intergenic 30.0%
!! GTTGGTAATAACAGAATGAA+AGG - chr3_3:1635021-1635040 None:intergenic 30.0%
AATTCGATTGTTATGCTTGT+TGG - chr3_3:1635219-1635238 None:intergenic 30.0%
! CGAGTTTAAGTTAGGTAAAA+TGG + chr3_3:1635437-1635456 Msa0437700:CDS 30.0%
AAGAATGTTCAAGAAGGAAA+AGG + chr3_3:1635585-1635604 Msa0437700:CDS 30.0%
AGAATGTTCAAGAAGGAAAA+GGG + chr3_3:1635586-1635605 Msa0437700:CDS 30.0%
AAAAACGGGAATGAGTATAT+TGG + chr3_3:1635621-1635640 Msa0437700:CDS 30.0%
TATATTGGTGAATGGAAGAA+CGG + chr3_3:1635636-1635655 Msa0437700:CDS 30.0%
ATTTGTATTTGGGAATCTGA+TGG + chr3_3:1635909-1635928 Msa0437700:CDS 30.0%
!! ATAATGTATCGGTGTTGAAT+AGG + chr3_3:1635964-1635983 Msa0437700:CDS 30.0%
TGTAGTGTTCATTGTTTGTT+TGG + chr3_3:1636157-1636176 Msa0437700:intron 30.0%
GTAGTGTTCATTGTTTGTTT+GGG + chr3_3:1636158-1636177 Msa0437700:intron 30.0%
!! TTGCATTAGTTCTGGATTTA+AGG + chr3_3:1636191-1636210 Msa0437700:intron 30.0%
TCCTTCAAATCAAAATCACT+CGG - chr3_3:1636284-1636303 None:intergenic 30.0%
!! TTGATTTGAAGGAGAAGTTT+TGG + chr3_3:1636291-1636310 Msa0437700:CDS 30.0%
AGTTTCGTTCTTTACATTTC+TGG + chr3_3:1636542-1636561 Msa0437700:intron 30.0%
ACACAAGGAGAATAATGTTA+TGG + chr3_3:1636577-1636596 Msa0437700:intron 30.0%
GATTACATGTTAGCTATTTG+TGG + chr3_3:1636647-1636666 Msa0437700:CDS 30.0%
GATCATAAATCTGTCATCTT+GGG - chr3_3:1636732-1636751 None:intergenic 30.0%
TGATCATAAATCTGTCATCT+TGG - chr3_3:1636733-1636752 None:intergenic 30.0%
!! GAGTTTTGTGACTAACTTAT+AGG + chr3_3:1636858-1636877 Msa0437700:intron 30.0%
TCACTTGTGACAAAATTCTA+TGG + chr3_3:1636934-1636953 Msa0437700:CDS 30.0%
CACTTGTGACAAAATTCTAT+GGG + chr3_3:1636935-1636954 Msa0437700:CDS 30.0%
ACTTGTGACAAAATTCTATG+GGG + chr3_3:1636936-1636955 Msa0437700:CDS 30.0%
!! TTGTTATTTAAACACAGACC+CGG + chr3_3:1637064-1637083 Msa0437700:intron 30.0%
TTGTCTGGACAATTATATCA+AGG - chr3_3:1637353-1637372 None:intergenic 30.0%
CAGAACATATTTCAACTTAC+CGG - chr3_3:1637687-1637706 None:intergenic 30.0%
TGTATCATTGTGTTCCTTAA+AGG + chr3_3:1637851-1637870 Msa0437700:intron 30.0%
AATTATCTTTAGCAAGTAGG+TGG + chr3_3:1638041-1638060 Msa0437700:intron 30.0%
ATTATCTTTAGCAAGTAGGT+GGG + chr3_3:1638042-1638061 Msa0437700:intron 30.0%
!! AGTAGGATTTTTCTTGTTTC+AGG + chr3_3:1638309-1638328 Msa0437700:intron 30.0%
! GTTTCAGGAAATCATTGATT+AGG + chr3_3:1638324-1638343 Msa0437700:intron 30.0%
! AGGAAATCATTGATTAGGTT+AGG + chr3_3:1638329-1638348 Msa0437700:intron 30.0%
AATGTTGTCATGAATCATGA+TGG + chr3_3:1638665-1638684 Msa0437700:three_prime_UTR 30.0%
AAGAAAGCTCGAAATTGATT+CGG + chr3_3:1638725-1638744 Msa0437700:three_prime_UTR 30.0%
CAATAGACTGTTTGATTAAC+AGG + chr3_3:1638769-1638788 Msa0437700:three_prime_UTR 30.0%
! TGAAGATTTTGCCATAATGA+TGG + chr3_3:1638828-1638847 Msa0437700:three_prime_UTR 30.0%
TGATCTTTGTACATGAAAGA+TGG + chr3_3:1638868-1638887 Msa0437700:three_prime_UTR 30.0%
!!! GAAAGTGTACAGTTCTTTTT+TGG + chr3_3:1639069-1639088 Msa0437700:three_prime_UTR 30.0%
!! TAGTGATTGGTGCTATTTAC+TGG - chr3_3:1634832-1634851 None:intergenic 35.0%
! GTAATCTAGTTATTGATGGC+TGG - chr3_3:1634906-1634925 None:intergenic 35.0%
CGGAGAAAAATAAAAGTTGG+TGG - chr3_3:1634930-1634949 None:intergenic 35.0%
!! GTTCTGCTTTGTTTCTACTT+CGG - chr3_3:1634950-1634969 None:intergenic 35.0%
TGAAAGGAAATGAATCACTG+TGG - chr3_3:1635005-1635024 None:intergenic 35.0%
!!! CATTTTTTTTTCCGGCAAAG+AGG - chr3_3:1635059-1635078 None:intergenic 35.0%
!!! GTGATTGACGCATTTTTTGA+AGG - chr3_3:1635098-1635117 None:intergenic 35.0%
! TTGTATTTTCCTGATCCGTT+TGG - chr3_3:1635321-1635340 None:intergenic 35.0%
ACGGATCAGGAAAATACAAA+TGG + chr3_3:1635322-1635341 Msa0437700:CDS 35.0%
GGAAAATACAAATGGAACGA+TGG + chr3_3:1635330-1635349 Msa0437700:CDS 35.0%
TTAGGTAAAATGGAAGGTTC+TGG + chr3_3:1635447-1635466 Msa0437700:CDS 35.0%
GAGATATTTACAGTGGTTCA+TGG + chr3_3:1635490-1635509 Msa0437700:CDS 35.0%
TGGAGTTCCGATAGAAAAAA+CGG + chr3_3:1635510-1635529 Msa0437700:CDS 35.0%
TCCGATAGAAAAAACGGTTA+CGG + chr3_3:1635516-1635535 Msa0437700:CDS 35.0%
!!! TCCGTAACCGTTTTTTCTAT+CGG - chr3_3:1635520-1635539 None:intergenic 35.0%
!! GGTAACGGAGATTATTATGA+AGG + chr3_3:1635552-1635571 Msa0437700:CDS 35.0%
ACGGAGATTATTATGAAGGT+TGG + chr3_3:1635556-1635575 Msa0437700:CDS 35.0%
GAGATTATTATGAAGGTTGG+TGG + chr3_3:1635559-1635578 Msa0437700:CDS 35.0%
TGGAAGAAGAATGTTCAAGA+AGG + chr3_3:1635579-1635598 Msa0437700:CDS 35.0%
GGAATGAGTATATTGGTGAA+TGG + chr3_3:1635628-1635647 Msa0437700:CDS 35.0%
!! TGGAAGAACGGTGTTATTAA+CGG + chr3_3:1635648-1635667 Msa0437700:CDS 35.0%
TTGAATGGGAATCGTTATGA+AGG + chr3_3:1635690-1635709 Msa0437700:CDS 35.0%
GAATCGTTATGAAGGTGAAT+GGG + chr3_3:1635698-1635717 Msa0437700:CDS 35.0%
TATGAAGGTGAATGGGAAAA+TGG + chr3_3:1635705-1635724 Msa0437700:CDS 35.0%
! TTGAATGGGAGTTTTTATCC+TGG + chr3_3:1635822-1635841 Msa0437700:CDS 35.0%
!! ATGATTTTGCTGTGACAATG+AGG + chr3_3:1635847-1635866 Msa0437700:CDS 35.0%
! TTGAAGGTGGAAAGGATTTT+GGG + chr3_3:1635883-1635902 Msa0437700:CDS 35.0%
CGAAACTGCTTAATCTCTTT+GGG - chr3_3:1636014-1636033 None:intergenic 35.0%
TCGAAACTGCTTAATCTCTT+TGG - chr3_3:1636015-1636034 None:intergenic 35.0%
AAGAGATTAAGCAGTTTCGA+CGG + chr3_3:1636015-1636034 Msa0437700:CDS 35.0%
!!! TTCTGGTTGTTTTGTTTCTG+AGG + chr3_3:1636040-1636059 Msa0437700:CDS 35.0%
!!! ACCGAGTGATTTTGATTTGA+AGG + chr3_3:1636280-1636299 Msa0437700:CDS 35.0%
GTAATCTTAGATCCTTCAGA+AGG - chr3_3:1636326-1636345 None:intergenic 35.0%
! ATTACTGCCCTATGGTTTTT+AGG + chr3_3:1636381-1636400 Msa0437700:CDS 35.0%
GGCTATACCTAAAAACCATA+GGG - chr3_3:1636391-1636410 None:intergenic 35.0%
AGGCTATACCTAAAAACCAT+AGG - chr3_3:1636392-1636411 None:intergenic 35.0%
!!! TAGCCTTTTTGTTTTTCACC+TGG + chr3_3:1636406-1636425 Msa0437700:intron 35.0%
CTACCAGGTGAAAAACAAAA+AGG - chr3_3:1636412-1636431 None:intergenic 35.0%
CATTTCTTTAGCACTCACAT+AGG + chr3_3:1636443-1636462 Msa0437700:intron 35.0%
ATAGCTAACATGTAATCAGC+AGG - chr3_3:1636644-1636663 None:intergenic 35.0%
AGTGAAAAAATCCGAAGTCA+AGG + chr3_3:1636757-1636776 Msa0437700:CDS 35.0%
CCAAAAACAAACCTTGACTT+CGG - chr3_3:1636771-1636790 None:intergenic 35.0%
! CATACTAGTTTGAACGAACA+CGG - chr3_3:1636816-1636835 None:intergenic 35.0%
CGAACATGTTTCTCAATATG+AGG + chr3_3:1636909-1636928 Msa0437700:CDS 35.0%
GTACATTGTGTCAAACCAAT+TGG + chr3_3:1636958-1636977 Msa0437700:CDS 35.0%
AAGTCAAATCGTCTATGGAT+TGG - chr3_3:1637126-1637145 None:intergenic 35.0%
!! CATAGACGATTTGACTTGAA+GGG + chr3_3:1637129-1637148 Msa0437700:CDS 35.0%
GAAACACAAAATTGAGATCG+AGG - chr3_3:1637221-1637240 None:intergenic 35.0%
CTTTGAACCAATTTCTTTGC+AGG - chr3_3:1637245-1637264 None:intergenic 35.0%
AATTGTCCAGACAAATTGAG+AGG + chr3_3:1637359-1637378 Msa0437700:intron 35.0%
ATTGTCCAGACAAATTGAGA+GGG + chr3_3:1637360-1637379 Msa0437700:intron 35.0%
TTTGGAAGCTGAAGGAATTA+TGG + chr3_3:1637393-1637412 Msa0437700:CDS 35.0%
!! ATGGATTACAGTCTTTTGGT+CGG + chr3_3:1637412-1637431 Msa0437700:CDS 35.0%
CATCTACAATATGCACAGAA+AGG - chr3_3:1637519-1637538 None:intergenic 35.0%
AAGAGTCATGCTTTCCTAAA+AGG - chr3_3:1637588-1637607 None:intergenic 35.0%
! CGGTAAGTTGAAATATGTTC+TGG + chr3_3:1637685-1637704 Msa0437700:intron 35.0%
ACCACATCCATAGTTTAAGT+GGG + chr3_3:1637757-1637776 Msa0437700:intron 35.0%
GTAACTACCCACTTAAACTA+TGG - chr3_3:1637767-1637786 None:intergenic 35.0%
TCTATCACTGTGTTCCATAA+AGG + chr3_3:1637892-1637911 Msa0437700:intron 35.0%
TACAACATCTCACTCCTTTA+TGG - chr3_3:1637909-1637928 None:intergenic 35.0%
ATAAAGGAGTGAGATGTTGT+AGG + chr3_3:1637908-1637927 Msa0437700:intron 35.0%
! ATTTTACTCCTTGTCGCATT+GGG + chr3_3:1638429-1638448 Msa0437700:CDS 35.0%
AAGAGGTTTCGTGATTTCTT+GGG + chr3_3:1638593-1638612 Msa0437700:CDS 35.0%
! TAGCATCGAGTATGAAACAA+AGG + chr3_3:1638638-1638657 Msa0437700:exon 35.0%
! AGAAAGCTCGAAATTGATTC+GGG + chr3_3:1638726-1638745 Msa0437700:three_prime_UTR 35.0%
ACTGTTTGATTAACAGGCTA+TGG + chr3_3:1638775-1638794 Msa0437700:three_prime_UTR 35.0%
TCTTTGTACATGAAAGATGG+TGG + chr3_3:1638871-1638890 Msa0437700:three_prime_UTR 35.0%
! TTTTCTGTCTTTCCATTGGT+TGG + chr3_3:1638914-1638933 Msa0437700:three_prime_UTR 35.0%
! TTTCTGTCTTTCCATTGGTT+GGG + chr3_3:1638915-1638934 Msa0437700:three_prime_UTR 35.0%
GATATAAGAGAGAGAGAGAG+AGG - chr3_3:1634859-1634878 None:intergenic 40.0%
AGCTCAGAAAAGAAGTCAGA+AGG - chr3_3:1634881-1634900 None:intergenic 40.0%
!! TGCTTGTTGGTGAGATTTTC+CGG - chr3_3:1635206-1635225 None:intergenic 40.0%
!! ATGCTTTTTGGCGGTTCTTT+TGG - chr3_3:1635250-1635269 None:intergenic 40.0%
!! GTTGGGTAAATGCTTTTTGG+CGG - chr3_3:1635259-1635278 None:intergenic 40.0%
!! GCCAAAAAGCATTTACCCAA+CGG + chr3_3:1635258-1635277 Msa0437700:CDS 40.0%
! ACCGTTGGGTAAATGCTTTT+TGG - chr3_3:1635262-1635281 None:intergenic 40.0%
AACGATGGTTGTATCTACGA+AGG + chr3_3:1635345-1635364 Msa0437700:CDS 40.0%
GTTGTATCTACGAAGGTGAA+TGG + chr3_3:1635352-1635371 Msa0437700:CDS 40.0%
! CCACGAGAATTTTCCATTTC+CGG - chr3_3:1635394-1635413 None:intergenic 40.0%
CCTTCGTAAATAGAACCTGA+AGG - chr3_3:1635417-1635436 None:intergenic 40.0%
! CCTTCAGGTTCTATTTACGA+AGG + chr3_3:1635414-1635433 Msa0437700:CDS 40.0%
! TACGAAGGCGAGTTTAAGTT+AGG + chr3_3:1635429-1635448 Msa0437700:CDS 40.0%
!!! GAAGGTTCTGGAACTTTTAC+TGG + chr3_3:1635459-1635478 Msa0437700:CDS 40.0%
ACCACTGTAAATATCTCCGT+CGG - chr3_3:1635487-1635506 None:intergenic 40.0%
GGTTACGGAAAGAAACGTTA+CGG + chr3_3:1635531-1635550 Msa0437700:CDS 40.0%
GGAAAGAAACGTTACGGTAA+CGG + chr3_3:1635537-1635556 Msa0437700:CDS 40.0%
ATGTTCAAGAAGGAAAAGGG+AGG + chr3_3:1635589-1635608 Msa0437700:CDS 40.0%
! AAGGAAAAGGGAGGTATGTT+TGG + chr3_3:1635598-1635617 Msa0437700:CDS 40.0%
! GGGAGGTATGTTTGGAAAAA+CGG + chr3_3:1635606-1635625 Msa0437700:CDS 40.0%
! GGAGGTATGTTTGGAAAAAC+GGG + chr3_3:1635607-1635626 Msa0437700:CDS 40.0%
!! AACGGTGTTATTAACGGAAG+AGG + chr3_3:1635654-1635673 Msa0437700:CDS 40.0%
GAACGCTTGTTTGGTTGAAT+GGG + chr3_3:1635676-1635695 Msa0437700:CDS 40.0%
GGAATCGTTATGAAGGTGAA+TGG + chr3_3:1635697-1635716 Msa0437700:CDS 40.0%
CTGATGGAAGTTGCTATGTT+GGG + chr3_3:1635760-1635779 Msa0437700:CDS 40.0%
GAAGTTGCTATGTTGGGAAT+TGG + chr3_3:1635766-1635785 Msa0437700:CDS 40.0%
!!! AGGAAGAGGTGTTTTGTTGA+AGG + chr3_3:1635867-1635886 Msa0437700:CDS 40.0%
!!! AAGAGGTGTTTTGTTGAAGG+TGG + chr3_3:1635870-1635889 Msa0437700:CDS 40.0%
!! GTGTTTTGTTGAAGGTGGAA+AGG + chr3_3:1635875-1635894 Msa0437700:CDS 40.0%
! GTTGAAGGTGGAAAGGATTT+TGG + chr3_3:1635882-1635901 Msa0437700:CDS 40.0%
! TGGGAATCTGATGGTGAAAA+AGG + chr3_3:1635918-1635937 Msa0437700:CDS 40.0%
!! GTATCGGTGTTGAATAGGAT+TGG + chr3_3:1635969-1635988 Msa0437700:CDS 40.0%
!! TGTTTCTGAGGTTAAGAGAC+CGG + chr3_3:1636052-1636071 Msa0437700:CDS 40.0%
ACCGGGTGAAACTATATGTA+AGG + chr3_3:1636070-1636089 Msa0437700:CDS 40.0%
CCCTTACATATAGTTTCACC+CGG - chr3_3:1636074-1636093 None:intergenic 40.0%
CCGGGTGAAACTATATGTAA+GGG + chr3_3:1636071-1636090 Msa0437700:CDS 40.0%
CGGGTGAAACTATATGTAAG+GGG + chr3_3:1636072-1636091 Msa0437700:CDS 40.0%
TGTATTTGTAGGCACTCTGT+TGG + chr3_3:1636227-1636246 Msa0437700:intron 40.0%
!!! TGAAGGAGAAGTTTTGGACT+AGG + chr3_3:1636297-1636316 Msa0437700:CDS 40.0%
! GCAACATTTGATTTCGTCGA+AGG + chr3_3:1636465-1636484 Msa0437700:intron 40.0%
TGGTCAGCCTAATTAACACA+AGG + chr3_3:1636562-1636581 Msa0437700:intron 40.0%
ACAATTGAGGAAGCGATTTC+AGG + chr3_3:1636613-1636632 Msa0437700:CDS 40.0%
!! CCGAAGTCAAGGTTTGTTTT+TGG + chr3_3:1636768-1636787 Msa0437700:intron 40.0%
CATTGTGTCAAACCAATTGG+AGG + chr3_3:1636961-1636980 Msa0437700:CDS 40.0%
! TTCAACAAAGGCATACCTTC+TGG - chr3_3:1636987-1637006 None:intergenic 40.0%
!!! GATGGGCAATCTTTTTTGCT+CGG + chr3_3:1637095-1637114 Msa0437700:CDS 40.0%
CCTTCAAGTCAAATCGTCTA+TGG - chr3_3:1637131-1637150 None:intergenic 40.0%
!! CCATAGACGATTTGACTTGA+AGG + chr3_3:1637128-1637147 Msa0437700:CDS 40.0%
! CTTCAGTCTTATCTGTCGTA+CGG - chr3_3:1637167-1637186 None:intergenic 40.0%
ATTGAGATCGAGGTCTTTGA+GGG - chr3_3:1637211-1637230 None:intergenic 40.0%
AATTGAGATCGAGGTCTTTG+AGG - chr3_3:1637212-1637231 None:intergenic 40.0%
TGTTTCGCCTGCAAAGAAAT+TGG + chr3_3:1637235-1637254 Msa0437700:CDS 40.0%
ACAATCCCTCTCAATTTGTC+TGG - chr3_3:1637368-1637387 None:intergenic 40.0%
!!! TCACCATTTTTTTTGCGCAC+TGG + chr3_3:1637478-1637497 Msa0437700:CDS 40.0%
GTACCAGTGCGCAAAAAAAA+TGG - chr3_3:1637484-1637503 None:intergenic 40.0%
CAGAGTGAAAAGTTTATGCG+TGG + chr3_3:1637610-1637629 Msa0437700:CDS 40.0%
CACCACATCCATAGTTTAAG+TGG + chr3_3:1637756-1637775 Msa0437700:intron 40.0%
ACCCACTTAAACTATGGATG+TGG - chr3_3:1637761-1637780 None:intergenic 40.0%
TACAGCATCTCACTCCTTTA+AGG - chr3_3:1637868-1637887 None:intergenic 40.0%
TTAAAGGAGTGAGATGCTGT+AGG + chr3_3:1637867-1637886 Msa0437700:intron 40.0%
TAGGTGGGAATAATGTAGAG+CGG + chr3_3:1638057-1638076 Msa0437700:intron 40.0%
GAATAATGTAGAGCGGGAAA+CGG + chr3_3:1638064-1638083 Msa0437700:intron 40.0%
ATTAATTAGGACCACGACCT+GGG - chr3_3:1638107-1638126 None:intergenic 40.0%
AATTAATTAGGACCACGACC+TGG - chr3_3:1638108-1638127 None:intergenic 40.0%
TTTGACCAATACACCAGTCT+TGG + chr3_3:1638398-1638417 Msa0437700:CDS 40.0%
TTGACCAATACACCAGTCTT+GGG + chr3_3:1638399-1638418 Msa0437700:CDS 40.0%
CAATGCGACAAGGAGTAAAA+TGG - chr3_3:1638430-1638449 None:intergenic 40.0%
! CATTTTACTCCTTGTCGCAT+TGG + chr3_3:1638428-1638447 Msa0437700:CDS 40.0%
! TTTTACTCCTTGTCGCATTG+GGG + chr3_3:1638430-1638449 Msa0437700:CDS 40.0%
!! CGAGTAAAGCTTTGGATCAA+CGG - chr3_3:1638573-1638592 None:intergenic 40.0%
ATCCAAAGCTTTACTCGAAG+AGG + chr3_3:1638576-1638595 Msa0437700:CDS 40.0%
AACCTCTTCGAGTAAAGCTT+TGG - chr3_3:1638581-1638600 None:intergenic 40.0%
GAAGAGGTTTCGTGATTTCT+TGG + chr3_3:1638592-1638611 Msa0437700:CDS 40.0%
AGAGGTTTCGTGATTTCTTG+GGG + chr3_3:1638594-1638613 Msa0437700:CDS 40.0%
TGTTTCATACTCGATGCTAC+CGG - chr3_3:1638637-1638656 None:intergenic 40.0%
CAATTTCGAGCTTTCTTTCC+TGG - chr3_3:1638722-1638741 None:intergenic 40.0%
!! ATTGATTCGGGTGTTGGAAT+TGG + chr3_3:1638738-1638757 Msa0437700:three_prime_UTR 40.0%
CCTTCAGTGAACCATCATTA+TGG - chr3_3:1638842-1638861 None:intergenic 40.0%
CCATAATGATGGTTCACTGA+AGG + chr3_3:1638839-1638858 Msa0437700:three_prime_UTR 40.0%
AATCTACACATCCCAACCAA+TGG - chr3_3:1638929-1638948 None:intergenic 40.0%
GTTGGGATGTGTAGATTCTT+TGG + chr3_3:1638932-1638951 Msa0437700:three_prime_UTR 40.0%
! AAGTAAAGTATCCGCGCATT+TGG - chr3_3:1639040-1639059 None:intergenic 40.0%
AAATGCGCGGATACTTTACT+TGG + chr3_3:1639039-1639058 Msa0437700:three_prime_UTR 40.0%
! AGAGAGAGGTGCATAGTGAT+TGG - chr3_3:1634845-1634864 None:intergenic 45.0%
!! AGGAGAGGAAAGTGTTGTGT+TGG - chr3_3:1635039-1635058 None:intergenic 45.0%
!!! TTTTTTCCGGCAAAGAGGAG+AGG - chr3_3:1635054-1635073 None:intergenic 45.0%
ACCCAACGGTGATTCTTACA+TGG + chr3_3:1635272-1635291 Msa0437700:CDS 45.0%
CCCATGTAAGAATCACCGTT+GGG - chr3_3:1635276-1635295 None:intergenic 45.0%
CCCAACGGTGATTCTTACAT+GGG + chr3_3:1635273-1635292 Msa0437700:CDS 45.0%
TCCCATGTAAGAATCACCGT+TGG - chr3_3:1635277-1635296 None:intergenic 45.0%
TCTTACATGGGAACCTTCTC+CGG + chr3_3:1635285-1635304 Msa0437700:CDS 45.0%
AACAACACACCAAACGGATC+AGG + chr3_3:1635309-1635328 Msa0437700:CDS 45.0%
TACGAAGGTGAATGGAAACG+AGG + chr3_3:1635360-1635379 Msa0437700:CDS 45.0%
TGGAAACGAGGAAAAGCTTC+CGG + chr3_3:1635372-1635391 Msa0437700:CDS 45.0%
CCGGAAATGGAAAATTCTCG+TGG + chr3_3:1635391-1635410 Msa0437700:CDS 45.0%
! GGAACTTTTACTGGATCCGA+CGG + chr3_3:1635468-1635487 Msa0437700:CDS 45.0%
TCCGACGGAGATATTTACAG+TGG + chr3_3:1635483-1635502 Msa0437700:CDS 45.0%
GGAACGCTTGTTTGGTTGAA+TGG + chr3_3:1635675-1635694 Msa0437700:CDS 45.0%
TGGGAAAATGGTGTTCCGAA+AGG + chr3_3:1635717-1635736 Msa0437700:CDS 45.0%
GGGAAAATGGTGTTCCGAAA+GGG + chr3_3:1635718-1635737 Msa0437700:CDS 45.0%
GTAAACACACCTTGCCCTTT+CGG - chr3_3:1635735-1635754 None:intergenic 45.0%
AAGGGCAAGGTGTGTTTACT+TGG + chr3_3:1635736-1635755 Msa0437700:CDS 45.0%
CCAACATAGCAACTTCCATC+AGG - chr3_3:1635762-1635781 None:intergenic 45.0%
CCTGATGGAAGTTGCTATGT+TGG + chr3_3:1635759-1635778 Msa0437700:CDS 45.0%
GTCACAGCAAAATCATCACC+AGG - chr3_3:1635843-1635862 None:intergenic 45.0%
TTGCTGTGACAATGAGGAAG+AGG + chr3_3:1635853-1635872 Msa0437700:CDS 45.0%
AAGCAGTTTCGACGGAATTC+TGG + chr3_3:1636023-1636042 Msa0437700:CDS 45.0%
!! GTTTCTGAGGTTAAGAGACC+GGG + chr3_3:1636053-1636072 Msa0437700:CDS 45.0%
TTGTAGGCACTCTGTTGGAA+AGG + chr3_3:1636232-1636251 Msa0437700:intron 45.0%
! TGGACTAGGTTTCCTTCTGA+AGG + chr3_3:1636311-1636330 Msa0437700:CDS 45.0%
! AACTCCATCGATTGATGTGG+TGG - chr3_3:1636350-1636369 None:intergenic 45.0%
ATCAATCGATGGAGTTCCGT+TGG + chr3_3:1636354-1636373 Msa0437700:CDS 45.0%
TAGGGCAGTAATCCTTCCAA+CGG - chr3_3:1636373-1636392 None:intergenic 45.0%
TTGGAAGGATTACTGCCCTA+TGG + chr3_3:1636373-1636392 Msa0437700:CDS 45.0%
ATTGAGGAAGCGATTTCAGG+TGG + chr3_3:1636616-1636635 Msa0437700:CDS 45.0%
CTTTCATCTCCTGGCAAAAG+TGG + chr3_3:1636689-1636708 Msa0437700:CDS 45.0%
!! AAGAAGCTTCCACTTTTGCC+AGG - chr3_3:1636701-1636720 None:intergenic 45.0%
GGGTTTAGTCTACGATTTGC+AGG + chr3_3:1637028-1637047 Msa0437700:intron 45.0%
! TGAGAGGGATTGTGCGTTTT+TGG + chr3_3:1637375-1637394 Msa0437700:CDS 45.0%
!! TGTGCGTTTTTGGAAGCTGA+AGG + chr3_3:1637385-1637404 Msa0437700:CDS 45.0%
! TGTCTTGTAGCTCTGCTTCA+AGG - chr3_3:1637645-1637664 None:intergenic 45.0%
TTGAAGCAGAGCTACAAGAC+AGG + chr3_3:1637644-1637663 Msa0437700:CDS 45.0%
TGAAGCAGAGCTACAAGACA+GGG + chr3_3:1637645-1637664 Msa0437700:CDS 45.0%
GACAGGGATAGAGTCAAATC+TGG + chr3_3:1637661-1637680 Msa0437700:CDS 45.0%
TGATACAAGCCTCTCTTCTC+AGG - chr3_3:1637838-1637857 None:intergenic 45.0%
AGGTGGGAATAATGTAGAGC+GGG + chr3_3:1638058-1638077 Msa0437700:intron 45.0%
TGCATAGCTGCAACTCTGTT+TGG + chr3_3:1638245-1638264 Msa0437700:intron 45.0%
GCATAGCTGCAACTCTGTTT+GGG + chr3_3:1638246-1638265 Msa0437700:intron 45.0%
TGCAACTCTGTTTGGGAGTA+AGG + chr3_3:1638253-1638272 Msa0437700:intron 45.0%
TCATCCCAAGACTGGTGTAT+TGG - chr3_3:1638406-1638425 None:intergenic 45.0%
AAAATGGCTCATCCCAAGAC+TGG - chr3_3:1638414-1638433 None:intergenic 45.0%
TTACGACATCAGCAAGAAGC+TGG + chr3_3:1638502-1638521 Msa0437700:CDS 45.0%
TCAACGGCTGAGATTGATGA+AGG - chr3_3:1638557-1638576 None:intergenic 45.0%
CTTGGGGAGAATATTCAGTG+AGG + chr3_3:1638610-1638629 Msa0437700:CDS 45.0%
GGAGAATATTCAGTGAGGAC+CGG + chr3_3:1638615-1638634 Msa0437700:CDS 45.0%
!! CTCGAAATTGATTCGGGTGT+TGG + chr3_3:1638732-1638751 Msa0437700:three_prime_UTR 45.0%
ATGATGGTTCACTGAAGGCA+AGG + chr3_3:1638844-1638863 Msa0437700:three_prime_UTR 45.0%
TGATGGTTCACTGAAGGCAA+GGG + chr3_3:1638845-1638864 Msa0437700:three_prime_UTR 45.0%
CACTTTCCTCTCCTCTTTGC+CGG + chr3_3:1635045-1635064 Msa0437700:five_prime_UTR 50.0%
TCCGGCAACAACACACCAAA+CGG + chr3_3:1635303-1635322 Msa0437700:CDS 50.0%
!! TCCGTTTGGTGTGTTGTTGC+CGG - chr3_3:1635307-1635326 None:intergenic 50.0%
CGAGGAAAAGCTTCCGGAAA+TGG + chr3_3:1635378-1635397 Msa0437700:CDS 50.0%
GGAAAATTCTCGTGGCCTTC+AGG + chr3_3:1635399-1635418 Msa0437700:CDS 50.0%
ACGGAAGAGGAACGCTTGTT+TGG + chr3_3:1635667-1635686 Msa0437700:CDS 50.0%
AATGGTGTTCCGAAAGGGCA+AGG + chr3_3:1635723-1635742 Msa0437700:CDS 50.0%
GGTGTGTTTACTTGGCCTGA+TGG + chr3_3:1635744-1635763 Msa0437700:CDS 50.0%
TACGCCACCACATCAATCGA+TGG + chr3_3:1636343-1636362 Msa0437700:CDS 50.0%
! CGGAACTCCATCGATTGATG+TGG - chr3_3:1636353-1636372 None:intergenic 50.0%
ATCGATGGAGTTCCGTTGGA+AGG + chr3_3:1636358-1636377 Msa0437700:CDS 50.0%
TTTGTGGAAATGCTGCCCTC+AGG + chr3_3:1636663-1636682 Msa0437700:CDS 50.0%
TTGTGGAAATGCTGCCCTCA+GGG + chr3_3:1636664-1636683 Msa0437700:CDS 50.0%
AGGAGATGAAAGCTCCCTGA+GGG - chr3_3:1636681-1636700 None:intergenic 50.0%
CAAACCAATTGGAGGCCAGA+AGG + chr3_3:1636969-1636988 Msa0437700:CDS 50.0%
CATACCTTCTGGCCTCCAAT+TGG - chr3_3:1636976-1636995 None:intergenic 50.0%
ATTGCCCATCACGATGAACC+GGG - chr3_3:1637085-1637104 None:intergenic 50.0%
GATTGCCCATCACGATGAAC+CGG - chr3_3:1637086-1637105 None:intergenic 50.0%
GACTTGAAGGGATCGTCACA+TGG + chr3_3:1637141-1637160 Msa0437700:CDS 50.0%
GGGATAGAGTCAAATCTGGC+CGG + chr3_3:1637665-1637684 Msa0437700:CDS 50.0%
GTCGAAGAACCTGAGAAGAG+AGG + chr3_3:1637826-1637845 Msa0437700:intron 50.0%
AGCGGGAAACGGTTGTTTGT+GGG + chr3_3:1638075-1638094 Msa0437700:intron 50.0%
GCATGCATACAAGTCACTGC+AGG + chr3_3:1638526-1638545 Msa0437700:CDS 50.0%
GAAACCGGAATCCAAATGCG+CGG + chr3_3:1639026-1639045 Msa0437700:three_prime_UTR 50.0%
GTATCCGCGCATTTGGATTC+CGG - chr3_3:1639033-1639052 None:intergenic 50.0%
!! CTGAGGAGGAGGTGTTGTTG+TGG - chr3_3:1635131-1635150 None:intergenic 55.0%
TGCTGAAGTGTGACCGGGTA+CGG - chr3_3:1635182-1635201 None:intergenic 55.0%
! TGGTGTGTTGTTGCCGGAGA+AGG - chr3_3:1635301-1635320 None:intergenic 55.0%
CAGGAGATGAAAGCTCCCTG+AGG - chr3_3:1636682-1636701 None:intergenic 55.0%
CTCAGGGAGCTTTCATCTCC+TGG + chr3_3:1636680-1636699 Msa0437700:CDS 55.0%
ACAGACCCGGTTCATCGTGA+TGG + chr3_3:1637077-1637096 Msa0437700:intron 55.0%
CAGACCCGGTTCATCGTGAT+GGG + chr3_3:1637078-1637097 Msa0437700:intron 55.0%
! GAGATCGAGGTCTTTGAGGG+TGG - chr3_3:1637208-1637227 None:intergenic 55.0%
GAGCGGGAAACGGTTGTTTG+TGG + chr3_3:1638074-1638093 Msa0437700:intron 55.0%
GCGGGAAACGGTTGTTTGTG+GGG + chr3_3:1638076-1638095 Msa0437700:intron 55.0%
CGGGAAACGGTTGTTTGTGG+GGG + chr3_3:1638077-1638096 Msa0437700:intron 55.0%
! TTGTTTGTGGGGGCATACCC+AGG + chr3_3:1638087-1638106 Msa0437700:intron 55.0%
TAGGTCTCCCCAATGCGACA+AGG - chr3_3:1638440-1638459 None:intergenic 55.0%
GTACGGCCGGTGGTAGTAAC+CGG - chr3_3:1635165-1635184 None:intergenic 60.0%
TTACTACCACCGGCCGTACC+CGG + chr3_3:1635166-1635185 Msa0437700:CDS 60.0%
TCCGGCTGCTGAAGTGTGAC+CGG - chr3_3:1635188-1635207 None:intergenic 60.0%
CAAGAGCAGAGCGCATGGCT+CGG + chr3_3:1638366-1638385 Msa0437700:CDS 60.0%
CGGCTGTGAGTCTGAGGAGG+AGG - chr3_3:1635142-1635161 None:intergenic 65.0%
CTCCTCAGACTCACAGCCGC+CGG + chr3_3:1635143-1635162 Msa0437700:CDS 65.0%
AACCGGCGGCTGTGAGTCTG+AGG - chr3_3:1635148-1635167 None:intergenic 65.0%
! CAGCCGCCGGTTACTACCAC+CGG + chr3_3:1635156-1635175 Msa0437700:CDS 65.0%
GAAGTGTGACCGGGTACGGC+CGG - chr3_3:1635178-1635197 None:intergenic 65.0%
CCGGCTGCTGAAGTGTGACC+GGG - chr3_3:1635187-1635206 None:intergenic 65.0%
CCCGGTCACACTTCAGCAGC+CGG + chr3_3:1635184-1635203 Msa0437700:CDS 65.0%
GCCAGCAAGAGCAGAGCGCA+TGG + chr3_3:1638361-1638380 Msa0437700:CDS 65.0%
GCCATGCGCTCTGCTCTTGC+TGG - chr3_3:1638365-1638384 None:intergenic 65.0%
CGGCGGCTGTGAGTCTGAGG+AGG - chr3_3:1635145-1635164 None:intergenic 70.0%
CGGCCGGTGGTAGTAACCGG+CGG - chr3_3:1635162-1635181 None:intergenic 70.0%
! GTGGGGGCATACCCAGGTCG+TGG + chr3_3:1638093-1638112 Msa0437700:intron 70.0%
! GAGCAGAGCGCATGGCTCGG+AGG + chr3_3:1638369-1638388 Msa0437700:CDS 70.0%
GTGTGACCGGGTACGGCCGG+TGG - chr3_3:1635175-1635194 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 1634817 1639109 1634817 ID=Msa0437700;Name=Msa0437700
chr3_3 mRNA 1634817 1639109 1634817 ID=Msa0437700-mRNA-1;Parent=Msa0437700;Name=Msa0437700-mRNA-1;_AED=0.07;_eAED=0.07;_QI=288|1|1|1|1|1|8|469|734
chr3_3 exon 1634817 1636138 1634817 ID=Msa0437700-mRNA-1:exon:192;Parent=Msa0437700-mRNA-1
chr3_3 exon 1636238 1636402 1636238 ID=Msa0437700-mRNA-1:exon:193;Parent=Msa0437700-mRNA-1
chr3_3 exon 1636613 1636778 1636613 ID=Msa0437700-mRNA-1:exon:194;Parent=Msa0437700-mRNA-1
chr3_3 exon 1636880 1636990 1636880 ID=Msa0437700-mRNA-1:exon:195;Parent=Msa0437700-mRNA-1
chr3_3 exon 1637081 1637274 1637081 ID=Msa0437700-mRNA-1:exon:196;Parent=Msa0437700-mRNA-1
chr3_3 exon 1637369 1637499 1637369 ID=Msa0437700-mRNA-1:exon:197;Parent=Msa0437700-mRNA-1
chr3_3 exon 1637593 1637686 1637593 ID=Msa0437700-mRNA-1:exon:198;Parent=Msa0437700-mRNA-1
chr3_3 exon 1638331 1639109 1638331 ID=Msa0437700-mRNA-1:exon:199;Parent=Msa0437700-mRNA-1
chr3_3 five_prime_UTR 1634817 1635104 1634817 ID=Msa0437700-mRNA-1:five_prime_utr;Parent=Msa0437700-mRNA-1
chr3_3 CDS 1635105 1636138 1635105 ID=Msa0437700-mRNA-1:cds;Parent=Msa0437700-mRNA-1
chr3_3 CDS 1636238 1636402 1636238 ID=Msa0437700-mRNA-1:cds;Parent=Msa0437700-mRNA-1
chr3_3 CDS 1636613 1636778 1636613 ID=Msa0437700-mRNA-1:cds;Parent=Msa0437700-mRNA-1
chr3_3 CDS 1636880 1636990 1636880 ID=Msa0437700-mRNA-1:cds;Parent=Msa0437700-mRNA-1
chr3_3 CDS 1637081 1637274 1637081 ID=Msa0437700-mRNA-1:cds;Parent=Msa0437700-mRNA-1
chr3_3 CDS 1637369 1637499 1637369 ID=Msa0437700-mRNA-1:cds;Parent=Msa0437700-mRNA-1
chr3_3 CDS 1637593 1637686 1637593 ID=Msa0437700-mRNA-1:cds;Parent=Msa0437700-mRNA-1
chr3_3 CDS 1638331 1638640 1638331 ID=Msa0437700-mRNA-1:cds;Parent=Msa0437700-mRNA-1
chr3_3 three_prime_UTR 1638641 1639109 1638641 ID=Msa0437700-mRNA-1:three_prime_utr;Parent=Msa0437700-mRNA-1
Gene Sequence

>Msa0437700

ATGCGTCAATCACTTCTCTCTAACCACAACAACACCTCCTCCTCAGACTCACAGCCGCCGGTTACTACCACCGGCCGTACCCGGTCACACTTCAGCAGCCGGAAAATCTCACCAACAAGCATAACAATCGAATTCGAAAAAACCAAAAGAACCGCCAAAAAGCATTTACCCAACGGTGATTCTTACATGGGAACCTTCTCCGGCAACAACACACCAAACGGATCAGGAAAATACAAATGGAACGATGGTTGTATCTACGAAGGTGAATGGAAACGAGGAAAAGCTTCCGGAAATGGAAAATTCTCGTGGCCTTCAGGTTCTATTTACGAAGGCGAGTTTAAGTTAGGTAAAATGGAAGGTTCTGGAACTTTTACTGGATCCGACGGAGATATTTACAGTGGTTCATGGAGTTCCGATAGAAAAAACGGTTACGGAAAGAAACGTTACGGTAACGGAGATTATTATGAAGGTTGGTGGAAGAAGAATGTTCAAGAAGGAAAAGGGAGGTATGTTTGGAAAAACGGGAATGAGTATATTGGTGAATGGAAGAACGGTGTTATTAACGGAAGAGGAACGCTTGTTTGGTTGAATGGGAATCGTTATGAAGGTGAATGGGAAAATGGTGTTCCGAAAGGGCAAGGTGTGTTTACTTGGCCTGATGGAAGTTGCTATGTTGGGAATTGGAATAATAATAATAATGATTTTCAATCTTCTTTATTGAATGGGAGTTTTTATCCTGGTGATGATTTTGCTGTGACAATGAGGAAGAGGTGTTTTGTTGAAGGTGGAAAGGATTTTGGGAAGATTTGTATTTGGGAATCTGATGGTGAAAAAGGTGATATAACTTGTGATATTGTTGATAATGTATCGGTGTTGAATAGGATTGGAAGTGAAAGTGTTTCAGATCCCAAAGAGATTAAGCAGTTTCGACGGAATTCTGGTTGTTTTGTTTCTGAGGTTAAGAGACCGGGTGAAACTATATGTAAGGGGCATAAGAATTATGATCTTATGCTTAATCTTCAATTGGGTATAAGGCACTCTGTTGGAAAGGAAGCTTCTATATCGAGAGAGCTAATACCGAGTGATTTTGATTTGAAGGAGAAGTTTTGGACTAGGTTTCCTTCTGAAGGATCTAAGATTACGCCACCACATCAATCGATGGAGTTCCGTTGGAAGGATTACTGCCCTATGGTTTTTAGACAATTGAGGAAGCGATTTCAGGTGGATCCTGCTGATTACATGTTAGCTATTTGTGGAAATGCTGCCCTCAGGGAGCTTTCATCTCCTGGCAAAAGTGGAAGCTTCTTCTACTTGACCCAAGATGACAGATTTATGATCAAGACAGTGAAAAAATCCGAAGTCAAGGTACTTATTCGGATGCTTCGAAGTTATTACGAACATGTTTCTCAATATGAGGATTCACTTGTGACAAAATTCTATGGGGTACATTGTGTCAAACCAATTGGAGGCCAGAAGACCCGGTTCATCGTGATGGGCAATCTTTTTTGCTCGGAATATCCAATCCATAGACGATTTGACTTGAAGGGATCGTCACATGGCCGTACGACAGATAAGACTGAAGATGAAATTGATGAAACTACCACCCTCAAAGACCTCGATCTCAATTTTGTGTTTCGCCTGCAAAGAAATTGGTTCAAAGATCTCATCACACAAATTGAGAGGGATTGTGCGTTTTTGGAAGCTGAAGGAATTATGGATTACAGTCTTTTGGTCGGCGTTCATTTTCGTGATGATAATACTTGTGACAAAATGGGATTATCACCATTTTTTTTGCGCACTGGAAAGCATGACTCTTATCAGAGTGAAAAGTTTATGCGTGGTTATCGCTTCCTTGAAGCAGAGCTACAAGACAGGGATAGAGTCAAATCTGGCCGGAAATCATTGATTAGGTTAGGAGCAAATATGCCAGCAAGAGCAGAGCGCATGGCTCGGAGGAGTGATTTTGACCAATACACCAGTCTTGGGATGAGCCATTTTACTCCTTGTCGCATTGGGGAGACCTATGATGTTGTTCTATATTTTGGGATTATAGACATTTTGCAAGATTACGACATCAGCAAGAAGCTGGAGCATGCATACAAGTCACTGCAGGTTGATCCTTCATCAATCTCAGCCGTTGATCCAAAGCTTTACTCGAAGAGGTTTCGTGATTTCTTGGGGAGAATATTCAGTGAGGACCGGTAG

Protein sequence

>Msa0437700

MRQSLLSNHNNTSSSDSQPPVTTTGRTRSHFSSRKISPTSITIEFEKTKRTAKKHLPNGDSYMGTFSGNNTPNGSGKYKWNDGCIYEGEWKRGKASGNGKFSWPSGSIYEGEFKLGKMEGSGTFTGSDGDIYSGSWSSDRKNGYGKKRYGNGDYYEGWWKKNVQEGKGRYVWKNGNEYIGEWKNGVINGRGTLVWLNGNRYEGEWENGVPKGQGVFTWPDGSCYVGNWNNNNNDFQSSLLNGSFYPGDDFAVTMRKRCFVEGGKDFGKICIWESDGEKGDITCDIVDNVSVLNRIGSESVSDPKEIKQFRRNSGCFVSEVKRPGETICKGHKNYDLMLNLQLGIRHSVGKEASISRELIPSDFDLKEKFWTRFPSEGSKITPPHQSMEFRWKDYCPMVFRQLRKRFQVDPADYMLAICGNAALRELSSPGKSGSFFYLTQDDRFMIKTVKKSEVKVLIRMLRSYYEHVSQYEDSLVTKFYGVHCVKPIGGQKTRFIVMGNLFCSEYPIHRRFDLKGSSHGRTTDKTEDEIDETTTLKDLDLNFVFRLQRNWFKDLITQIERDCAFLEAEGIMDYSLLVGVHFRDDNTCDKMGLSPFFLRTGKHDSYQSEKFMRGYRFLEAELQDRDRVKSGRKSLIRLGANMPARAERMARRSDFDQYTSLGMSHFTPCRIGETYDVVLYFGIIDILQDYDISKKLEHAYKSLQVDPSSISAVDPKLYSKRFRDFLGRIFSEDR*