AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1435980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1435980 MtrunA17_Chr4g0062111 98.008 251 5 0 1 251 1 251 0.0 496
Msa1435980 MtrunA17_Chr8g0372221 38.393 224 129 5 33 250 61 281 3.85e-45 152
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1435980 AT5G23040.2 76.233 223 50 2 32 251 36 258 6.89e-124 353
Msa1435980 AT5G23040.1 76.233 223 50 2 32 251 36 258 6.89e-124 353
Msa1435980 AT3G51140.1 33.473 239 145 4 17 251 50 278 5.34e-42 145
Msa1435980 AT3G51140.2 40.523 153 81 3 54 202 83 229 3.06e-34 123
Msa1435980 AT2G20920.1 27.500 200 123 5 38 216 52 250 2.49e-11 62.8

Find 90 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACTAACTCTGGGGAATTT+TGG 0.086811 tig0027833:+2172 None:intergenic
CAACTGATTTGTTCTAATTT+TGG 0.142844 tig0027833:-491 Msa1435980:three_prime_UTR
ATGCTTCTGAAGAAGAAATT+TGG 0.165582 tig0027833:-2114 Msa1435980:CDS
CAGCAACATTGTTGGAATAT+TGG 0.219376 tig0027833:+800 None:intergenic
GAGGAAAGCGGTGGCGAAAT+TGG 0.249902 tig0027833:+4688 None:intergenic
TTGGCTAGAGCGTTCGTTAT+TGG 0.284075 tig0027833:-953 Msa1435980:CDS
GCTACAGGTGGCAATCTCTT+TGG 0.284234 tig0027833:-1014 Msa1435980:intron
TGTACTCTTAATGAGTTTAT+AGG 0.296618 tig0027833:-659 Msa1435980:three_prime_UTR
ATTGTTTCTCTTTGCCTTCA+TGG 0.298571 tig0027833:-1867 Msa1435980:CDS
GTTGCCACTTCACTTGAAAA+AGG 0.300132 tig0027833:+710 None:intergenic
AGCAACATTGTTGGAATATT+GGG 0.319394 tig0027833:+801 None:intergenic
TGGCTAGAGCGTTCGTTATT+GGG 0.329181 tig0027833:-952 Msa1435980:intron
TGCTTCTGAAGAAGAAATTT+GGG 0.335100 tig0027833:-2113 Msa1435980:CDS
TTGGATTCTGCAGGCCCCTC+CGG 0.343652 tig0027833:-4561 Msa1435980:intron
ATGGGTCTCTGGTTCATTGC+TGG 0.351564 tig0027833:-826 Msa1435980:CDS
AATTCCCCAGAGTTAGTGTT+TGG 0.356525 tig0027833:-2168 Msa1435980:CDS
CATGCTCTTCAATTAGTGAT+TGG 0.364643 tig0027833:-4783 Msa1435980:five_prime_UTR
CTTGTGGCTGGATGGGTCTC+TGG 0.370387 tig0027833:-837 Msa1435980:CDS
AGGAAAAGAACGCGTTCCTT+TGG 0.372425 tig0027833:-4823 Msa1435980:five_prime_UTR
GTGGTTCTTTGATTAAATTT+CGG 0.383127 tig0027833:-577 Msa1435980:three_prime_UTR
ATTATGAATTCTGCTGAAAC+TGG 0.386488 tig0027833:-1833 Msa1435980:CDS
AAATGAAAAGACAAAGAGTT+TGG 0.389051 tig0027833:-972 Msa1435980:CDS
TCTTTGCCTTCATGGGTGGC+TGG 0.389646 tig0027833:-1859 Msa1435980:CDS
AGGTTTGGAGCTCTTGTGGC+TGG 0.394881 tig0027833:-849 Msa1435980:CDS
TTGTTTCTCTTTGCCTTCAT+GGG 0.395534 tig0027833:-1866 Msa1435980:CDS
TTGGAGCTCTTGTGGCTGGA+TGG 0.399967 tig0027833:-845 Msa1435980:CDS
TGGAGCTCTTGTGGCTGGAT+GGG 0.401053 tig0027833:-844 Msa1435980:CDS
AATCTCAATCTGAGCGTGTT+TGG 0.404163 tig0027833:+413 None:intergenic
AGGAAAGCGGTGGCGAAATT+GGG 0.406392 tig0027833:+4689 None:intergenic
ATGCTCTTCAATTAGTGATT+GGG 0.418401 tig0027833:-4782 Msa1435980:five_prime_UTR
CCAACGATGTTAAGAGTTCA+AGG 0.419073 tig0027833:+763 None:intergenic
CAATGTTGCTGCGCCCAACT+TGG 0.429282 tig0027833:-788 Msa1435980:CDS
TGGATTCTGCAGGCCCCTCC+GGG 0.429772 tig0027833:-4560 Msa1435980:intron
CAGTACATTGAATGAAACTA+TGG 0.433371 tig0027833:+680 None:intergenic
ATTCCCCAGAGTTAGTGTTT+GGG 0.449394 tig0027833:-2167 Msa1435980:CDS
GAAACTTGGCGAAACGTTGT+GGG 0.450485 tig0027833:+4523 None:intergenic
TTAATGATTATACCTCCATA+TGG 0.450789 tig0027833:+4472 None:intergenic
TGGGATCCTTACCGACGCCT+TGG 0.464510 tig0027833:-2148 Msa1435980:CDS
GCCTACTATTGTTAGCATAG+TGG 0.465510 tig0027833:-596 Msa1435980:three_prime_UTR
ACTCAAGATATGGCGAGGTT+AGG 0.467657 tig0027833:+379 None:intergenic
AGGATCCCAAACACTAACTC+TGG 0.471905 tig0027833:+2162 None:intergenic
GTTGGGCGCAGCAACATTGT+TGG 0.472629 tig0027833:+792 None:intergenic
CTGAGGATAATTTCAGTTGG+TGG 0.473276 tig0027833:+1893 None:intergenic
TTTCTGTTGCAACAGTATGC+TGG 0.473842 tig0027833:-2079 Msa1435980:CDS
AGAGTTCAAGGCTCCAAGTT+GGG 0.476403 tig0027833:+775 None:intergenic
ACTTAGTACGAAACGAAACT+TGG 0.478032 tig0027833:+4509 None:intergenic
CGAAACTTGGCGAAACGTTG+TGG 0.490078 tig0027833:+4522 None:intergenic
ACCACTATGCTAACAATAGT+AGG 0.494634 tig0027833:+595 None:intergenic
TTTGATATGTATCTTTGCAT+CGG 0.496147 tig0027833:-532 Msa1435980:three_prime_UTR
TCAAATCAAACCTGAAAAGC+AGG 0.503028 tig0027833:+1809 None:intergenic
TTATAGGTTTGGAGCTCTTG+TGG 0.505560 tig0027833:-853 Msa1435980:intron
TGCGCTGTAGACACACCATA+TGG 0.511360 tig0027833:-4487 Msa1435980:CDS
TTTCTTCTTCAGAAGCATCA+TGG 0.518629 tig0027833:+2119 None:intergenic
CCTTTCGTTCGTTCTGCAAG+AGG 0.519596 tig0027833:+4843 None:intergenic
TTTCTCTTTGCCTTCATGGG+TGG 0.529189 tig0027833:-1863 Msa1435980:CDS
AAGAACGCGTTCCTTTGGTC+CGG 0.530727 tig0027833:-4818 Msa1435980:five_prime_UTR
CTTTCGTTCGTTCTGCAAGA+GGG 0.533241 tig0027833:+4844 None:intergenic
GGATCCCAAACACTAACTCT+GGG 0.535496 tig0027833:+2163 None:intergenic
GGCCCCTCCGGGAAAATACA+AGG 0.538659 tig0027833:-4549 Msa1435980:CDS
AATGCTCCAGCCACCCATGA+AGG 0.539964 tig0027833:+1853 None:intergenic
CCTTGAACTCTTAACATCGT+TGG 0.541069 tig0027833:-763 Msa1435980:CDS
CTTCTGAGGATAATTTCAGT+TGG 0.554844 tig0027833:+1890 None:intergenic
AGCACATTCTTGACCCATGG+TGG 0.555534 tig0027833:+1932 None:intergenic
CACATTCTTGACCCATGGTG+GGG 0.558838 tig0027833:+1934 None:intergenic
AAGAGTTCAAGGCTCCAAGT+TGG 0.565418 tig0027833:+774 None:intergenic
TTTAGCACATTCTTGACCCA+TGG 0.565764 tig0027833:+1929 None:intergenic
CTAACACCAAGGCGTCGGTA+AGG 0.567021 tig0027833:+2142 None:intergenic
GAGGAGCGTAGAATCAATAG+AGG 0.575040 tig0027833:-2050 Msa1435980:CDS
GCACATTCTTGACCCATGGT+GGG 0.578738 tig0027833:+1933 None:intergenic
GAGCATGTTGTTGAACTCGC+CGG 0.584250 tig0027833:+4799 None:intergenic
TGATGGCTAGTTTCGTACAA+AGG 0.587486 tig0027833:-2009 Msa1435980:CDS
TGCAAAGATACATATCAAAG+AGG 0.593145 tig0027833:+536 None:intergenic
GCTAACAATAGTAGGCAACT+TGG 0.595501 tig0027833:+603 None:intergenic
GTGGTAGTTTGCAGTGCACA+CGG 0.596103 tig0027833:-4935 Msa1435980:five_prime_UTR
TCGTTCGTTCTGCAAGAGGG+AGG 0.600087 tig0027833:+4847 None:intergenic
TGTTGAACTCGCCGGACCAA+AGG 0.600611 tig0027833:+4807 None:intergenic
AGTTGAGGAGTCCCCACCAT+GGG 0.606304 tig0027833:-1945 Msa1435980:CDS
CCTCTTGCAGAACGAACGAA+AGG 0.609489 tig0027833:-4843 Msa1435980:five_prime_UTR
CAAGTTGAAGAAGAAAGTTG+AGG 0.611137 tig0027833:-1960 Msa1435980:CDS
CAAAGAGAAACAATCTTCTG+AGG 0.616936 tig0027833:+1876 None:intergenic
CATGGCTAACACCAAGGCGT+CGG 0.618805 tig0027833:+2137 None:intergenic
TGGCTAGTTTCGTACAAAGG+AGG 0.635562 tig0027833:-2006 Msa1435980:CDS
AACAGTATGCTGGACATGAG+AGG 0.646098 tig0027833:-2069 Msa1435980:CDS
GCTTCTGAAGAAGAAATTTG+GGG 0.649344 tig0027833:-2112 Msa1435980:CDS
AAGCATCATGGCTAACACCA+AGG 0.688521 tig0027833:+2131 None:intergenic
AAGTTGAGGAGTCCCCACCA+TGG 0.688946 tig0027833:-1946 Msa1435980:CDS
TCTCAATTACAACAACAACA+TGG 0.695771 tig0027833:-4732 Msa1435980:exon
CTTCTGAAGAAGAAATTTGG+GGG 0.702966 tig0027833:-2111 Msa1435980:CDS
GCTGTAGACACACCATATGG+AGG 0.724697 tig0027833:-4484 Msa1435980:intron
GATCCCAAACACTAACTCTG+GGG 0.736381 tig0027833:+2164 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATTAATTAATTAATA+TGG + tig0027833:751-770 None:intergenic 0.0%
!!! AATTAATTAATTAATGCTTT+TGG - tig0027833:759-778 Msa1435980:CDS 10.0%
!!! TATCTATATTATTTAGTTTT+GGG - tig0027833:952-971 Msa1435980:intron 10.0%
!! ATAAATTTATTTATTCCATA+AGG + tig0027833:3109-3128 None:intergenic 10.0%
!! CAAAACTAAATAATATAGAT+AGG + tig0027833:953-972 None:intergenic 15.0%
!!! CTATCTATATTATTTAGTTT+TGG - tig0027833:951-970 Msa1435980:intron 15.0%
!!! ATCTATATTATTTAGTTTTG+GGG - tig0027833:953-972 Msa1435980:CDS 15.0%
!!! TATTCTAATTTTTCAACTTT+TGG - tig0027833:1324-1343 Msa1435980:intron 15.0%
!!! ATTCTAATTTTTCAACTTTT+GGG - tig0027833:1325-1344 Msa1435980:intron 15.0%
!! TAAAAATAACGATAAATTCT+AGG + tig0027833:2450-2469 None:intergenic 15.0%
!! ACATTATTGAAAAGATAATT+TGG - tig0027833:4242-4261 Msa1435980:intron 15.0%
!! AAATGGTTAACAAAAATTAA+AGG + tig0027833:4447-4466 None:intergenic 15.0%
!!! AAACTCAACATTTTTTTTTT+TGG - tig0027833:4707-4726 Msa1435980:CDS 15.0%
!! AATAAATGAATTAAGGAAGA+AGG + tig0027833:693-712 None:intergenic 20.0%
!!! TTAATTTGACAGAAGTTTAA+CGG + tig0027833:1070-1089 None:intergenic 20.0%
!!! AAAACCTTGAAGTATTTTTT+GGG - tig0027833:1285-1304 Msa1435980:intron 20.0%
!! TCATATAAAATAGAATCCAA+AGG + tig0027833:1436-1455 None:intergenic 20.0%
!! TGTAAATACGAAAATGAATT+GGG + tig0027833:1484-1503 None:intergenic 20.0%
!! TTGTAAATACGAAAATGAAT+TGG + tig0027833:1485-1504 None:intergenic 20.0%
!! ATTGTCTATTATAAAACTAG+AGG - tig0027833:1757-1776 Msa1435980:intron 20.0%
!! TTGTCTATTATAAAACTAGA+GGG - tig0027833:1758-1777 Msa1435980:intron 20.0%
!! TTATTGTTGTGAAAACTAAA+GGG + tig0027833:1832-1851 None:intergenic 20.0%
!! ATTATTGTTGTGAAAACTAA+AGG + tig0027833:1833-1852 None:intergenic 20.0%
!! TAAAATTCCACATATAAATG+CGG + tig0027833:2194-2213 None:intergenic 20.0%
!! CATGTATTATGAAATGTTTA+GGG + tig0027833:2490-2509 None:intergenic 20.0%
!!! AAATTGCAATCCTAATTTTT+TGG + tig0027833:2720-2739 None:intergenic 20.0%
!! AATTTATTTATTCCATAAGG+TGG + tig0027833:3106-3125 None:intergenic 20.0%
!!! TGCTTTTGAAAAAATATTGA+TGG - tig0027833:3313-3332 Msa1435980:intron 20.0%
!!! ATTTTTTTCTACAATTTTGG+AGG + tig0027833:3686-3705 None:intergenic 20.0%
!! TCCAAAATTGTAGAAAAAAA+TGG - tig0027833:3685-3704 Msa1435980:intron 20.0%
!!! ACCATTTTTTTCTACAATTT+TGG + tig0027833:3689-3708 None:intergenic 20.0%
!! ATATAGACTTGTATAAACAA+AGG + tig0027833:4100-4119 None:intergenic 20.0%
!! GTTAGAACAATTTAATCTTA+AGG - tig0027833:4190-4209 Msa1435980:intron 20.0%
! TGAAGCGAATAAATGAATTA+AGG + tig0027833:700-719 None:intergenic 25.0%
! TTAATGATTATACCTCCATA+TGG + tig0027833:870-889 None:intergenic 25.0%
! AATATAGATAGGTGAATATG+TGG + tig0027833:942-961 None:intergenic 25.0%
!! ATACATTTAGAATAACCTCA+GGG + tig0027833:995-1014 None:intergenic 25.0%
! TGCTAATTAAGAAAATAGAG+GGG + tig0027833:1025-1044 None:intergenic 25.0%
! GTGCTAATTAAGAAAATAGA+GGG + tig0027833:1026-1045 None:intergenic 25.0%
! AGTGCTAATTAAGAAAATAG+AGG + tig0027833:1027-1046 None:intergenic 25.0%
! CAATGACAAAATTCAGAATT+AGG + tig0027833:1115-1134 None:intergenic 25.0%
!!! GAAAACCTTGAAGTATTTTT+TGG - tig0027833:1284-1303 Msa1435980:intron 25.0%
!!! ATTTTTTGGGAATCAATTGT+TGG - tig0027833:1298-1317 Msa1435980:intron 25.0%
!!! TTTTTTGGGAATCAATTGTT+GGG - tig0027833:1299-1318 Msa1435980:intron 25.0%
! AACCCAAATATGATCAAAAT+CGG + tig0027833:1392-1411 None:intergenic 25.0%
! ATGAATTGGGAATTGAAATT+TGG + tig0027833:1471-1490 None:intergenic 25.0%
!!! AGCAGTTTAGTTTTAACAAA+CGG - tig0027833:1669-1688 Msa1435980:intron 25.0%
!!! ATCTATTTTAAGAGACCTTA+AGG - tig0027833:1728-1747 Msa1435980:intron 25.0%
!!! TCTATTTTAAGAGACCTTAA+GGG - tig0027833:1729-1748 Msa1435980:intron 25.0%
! TGTCTATTATAAAACTAGAG+GGG - tig0027833:1759-1778 Msa1435980:intron 25.0%
!! TGTTATTTAAAGAGATCTCA+GGG - tig0027833:1789-1808 Msa1435980:intron 25.0%
!!! GAATTTTGTTTAAAATGCAC+CGG - tig0027833:1916-1935 Msa1435980:CDS 25.0%
! TTGTTGTAAGCAAATAGTAA+GGG - tig0027833:1954-1973 Msa1435980:CDS 25.0%
! AAAATTCCACATATAAATGC+GGG + tig0027833:2193-2212 None:intergenic 25.0%
! TAATCTATATTATACGCCAA+AGG + tig0027833:2372-2391 None:intergenic 25.0%
! GCATGTATTATGAAATGTTT+AGG + tig0027833:2491-2510 None:intergenic 25.0%
! TAGAAGCAACATCAATTATA+AGG - tig0027833:2627-2646 Msa1435980:intron 25.0%
! AACATCAATTATAAGGATAG+AGG - tig0027833:2634-2653 Msa1435980:intron 25.0%
! ACATCAATTATAAGGATAGA+GGG - tig0027833:2635-2654 Msa1435980:intron 25.0%
! TATAAAAGTTCCATACAACA+GGG - tig0027833:2677-2696 Msa1435980:intron 25.0%
!!! GTAGATCTGAAGTTTTTTAT+TGG + tig0027833:2894-2913 None:intergenic 25.0%
! CAAAAATCATCTTAAAGCTA+AGG + tig0027833:2994-3013 None:intergenic 25.0%
!!! CTTAGCTTTAAGATGATTTT+TGG - tig0027833:2992-3011 Msa1435980:intron 25.0%
! AATATTAATTTCTCAAACCG+TGG - tig0027833:3728-3747 Msa1435980:intron 25.0%
! ATATTAATTTCTCAAACCGT+GGG - tig0027833:3729-3748 Msa1435980:intron 25.0%
! AATGTTAAGTCATCTACAAA+GGG - tig0027833:3777-3796 Msa1435980:intron 25.0%
! CTATCTTTGGTTATCAATAA+AGG - tig0027833:3897-3916 Msa1435980:intron 25.0%
! AAAACTTTATCCAAAAAGAC+TGG + tig0027833:4064-4083 None:intergenic 25.0%
! AGGATATAATAGTGAATAGA+CGG + tig0027833:4127-4146 None:intergenic 25.0%
! ATTCACTATTATATCCTTCA+AGG - tig0027833:4130-4149 Msa1435980:intron 25.0%
!!! TGTCAATATGCAATTTTTTC+AGG + tig0027833:4292-4311 None:intergenic 25.0%
!! AACTCTTTGTCTTTTCATTT+AGG + tig0027833:4367-4386 None:intergenic 25.0%
! AAATGAAAAGACAAAGAGTT+TGG - tig0027833:4367-4386 Msa1435980:intron 25.0%
!!! GTTTACTTTTTCTTGTTCAT+TGG - tig0027833:4601-4620 Msa1435980:intron 25.0%
! TGTACTCTTAATGAGTTTAT+AGG - tig0027833:4680-4699 Msa1435980:CDS 25.0%
! GTGGTTCTTTGATTAAATTT+CGG - tig0027833:4762-4781 Msa1435980:five_prime_UTR 25.0%
! TTTGATATGTATCTTTGCAT+CGG - tig0027833:4807-4826 Msa1435980:five_prime_UTR 25.0%
!!! CAACTGATTTGTTCTAATTT+TGG - tig0027833:4848-4867 Msa1435980:five_prime_UTR 25.0%
!!! TTTGTTCTAATTTTGGTTCA+TGG - tig0027833:4855-4874 Msa1435980:five_prime_UTR 25.0%
ATGCTCTTCAATTAGTGATT+GGG - tig0027833:557-576 Msa1435980:three_prime_UTR 30.0%
TCTCAATTACAACAACAACA+TGG - tig0027833:607-626 Msa1435980:three_prime_UTR 30.0%
! TACATTTAGAATAACCTCAG+GGG + tig0027833:994-1013 None:intergenic 30.0%
! GATACATTTAGAATAACCTC+AGG + tig0027833:996-1015 None:intergenic 30.0%
GCTAATTAAGAAAATAGAGG+GGG + tig0027833:1024-1043 None:intergenic 30.0%
TGACAAAATTCAGAATTAGG+CGG + tig0027833:1112-1131 None:intergenic 30.0%
ATTGAATGGAGGAAATGAAA+AGG + tig0027833:1138-1157 None:intergenic 30.0%
! AACATCTCTTTTGTTCTAGT+TGG - tig0027833:1205-1224 Msa1435980:intron 30.0%
GATTCCCAAAAAATACTTCA+AGG + tig0027833:1292-1311 None:intergenic 30.0%
!! TTTTTGGGAATCAATTGTTG+GGG - tig0027833:1300-1319 Msa1435980:intron 30.0%
!!! TTGGGTTTGTTTTTGTTCAT+TGG - tig0027833:1405-1424 Msa1435980:intron 30.0%
ATCAGAAACATGAGAATAAG+AGG - tig0027833:1622-1641 Msa1435980:intron 30.0%
! AAGAGGTTTGTTTATTGAGA+AGG - tig0027833:1639-1658 Msa1435980:intron 30.0%
ATTAATTGTGTTAACCGAGA+AGG - tig0027833:1696-1715 Msa1435980:intron 30.0%
TTAATTGTGTTAACCGAGAA+GGG - tig0027833:1697-1716 Msa1435980:intron 30.0%
TAGATAAACAAATCCCTTCT+CGG + tig0027833:1713-1732 None:intergenic 30.0%
GTCTATTATAAAACTAGAGG+GGG - tig0027833:1760-1779 Msa1435980:intron 30.0%
!! GTGTTATTTAAAGAGATCTC+AGG - tig0027833:1788-1807 Msa1435980:intron 30.0%
GTTATTTAAAGAGATCTCAG+GGG - tig0027833:1790-1809 Msa1435980:intron 30.0%
ACAAAATGTCTTATCCCATT+AGG - tig0027833:1854-1873 Msa1435980:CDS 30.0%
TCAACGGAATAAAACCTAAT+GGG + tig0027833:1871-1890 None:intergenic 30.0%
TTCAACGGAATAAAACCTAA+TGG + tig0027833:1872-1891 None:intergenic 30.0%
! CTTGTTGTAAGCAAATAGTA+AGG - tig0027833:1953-1972 Msa1435980:CDS 30.0%
! CAAATAGTAAGGGTTTGTTT+GGG - tig0027833:1964-1983 Msa1435980:CDS 30.0%
TATTATACGCCAAAGGTTAA+GGG + tig0027833:2365-2384 None:intergenic 30.0%
ATATTATACGCCAAAGGTTA+AGG + tig0027833:2366-2385 None:intergenic 30.0%
TGGCGTATAATATAGATTAG+TGG - tig0027833:2373-2392 Msa1435980:intron 30.0%
!!! TATGCCTGTAGGTTATTTTT+TGG - tig0027833:2537-2556 Msa1435980:intron 30.0%
!!! ATGCCTGTAGGTTATTTTTT+GGG - tig0027833:2538-2557 Msa1435980:intron 30.0%
CTATAAAAGTTCCATACAAC+AGG - tig0027833:2676-2695 Msa1435980:intron 30.0%
!! TTTCAATCTCCGATTTTAGT+TGG - tig0027833:2737-2756 Msa1435980:intron 30.0%
!! GAACTTGATCTTTGATTTGA+TGG - tig0027833:2785-2804 Msa1435980:intron 30.0%
CAGCATTTATATTCCTTTCT+TGG - tig0027833:2851-2870 Msa1435980:intron 30.0%
AAAAGATTCTCAACCAAGAA+AGG + tig0027833:2867-2886 None:intergenic 30.0%
! ATGCTTCTGAAGAAGAAATT+TGG - tig0027833:3225-3244 Msa1435980:intron 30.0%
! TGCTTCTGAAGAAGAAATTT+GGG - tig0027833:3226-3245 Msa1435980:intron 30.0%
ATTATGAATTCTGCTGAAAC+TGG - tig0027833:3506-3525 Msa1435980:intron 30.0%
!! TTGGAGGAATAATTTTCAAG+TGG + tig0027833:3670-3689 None:intergenic 30.0%
AAAAATGGTATATGTTCGCT+TGG - tig0027833:3700-3719 Msa1435980:intron 30.0%
AGATGACTTAACATTCAGTA+TGG + tig0027833:3772-3791 None:intergenic 30.0%
GAATGTTAAGTCATCTACAA+AGG - tig0027833:3776-3795 Msa1435980:intron 30.0%
!! TCACTAAAGTCTTATTAGCA+AGG + tig0027833:3874-3893 None:intergenic 30.0%
TTATATCCTTCAAGGCATAA+TGG - tig0027833:4138-4157 Msa1435980:intron 30.0%
GTGCAGTAAAGGAAAATAAA+TGG + tig0027833:4464-4483 None:intergenic 30.0%
TTCCTTTACTGCACAATTAT+AGG - tig0027833:4470-4489 Msa1435980:intron 30.0%
AACCTATAATTGTGCAGTAA+AGG + tig0027833:4475-4494 None:intergenic 30.0%
TTACTGCACAATTATAGGTT+TGG - tig0027833:4475-4494 Msa1435980:intron 30.0%
AGCAACATTGTTGGAATATT+GGG + tig0027833:4541-4560 None:intergenic 30.0%
CAGTACATTGAATGAAACTA+TGG + tig0027833:4662-4681 None:intergenic 30.0%
TGCAAAGATACATATCAAAG+AGG + tig0027833:4806-4825 None:intergenic 30.0%
CATGCTCTTCAATTAGTGAT+TGG - tig0027833:556-575 Msa1435980:three_prime_UTR 35.0%
!!! GAAGAAGGAGTACAGTTTTT+TGG + tig0027833:678-697 None:intergenic 35.0%
! TTAATGCTTTTGGATTCTGC+AGG - tig0027833:769-788 Msa1435980:CDS 35.0%
ACTTAGTACGAAACGAAACT+TGG + tig0027833:833-852 None:intergenic 35.0%
TCTTCAAAACCATTGACGAA+CGG + tig0027833:1260-1279 None:intergenic 35.0%
!!! TCGCCGATTTTGATCATATT+TGG - tig0027833:1386-1405 Msa1435980:intron 35.0%
!!! CGCCGATTTTGATCATATTT+GGG - tig0027833:1387-1406 Msa1435980:intron 35.0%
AGAAAGAACAAAGACCTTGT+TGG - tig0027833:1549-1568 Msa1435980:intron 35.0%
TTTGAGCATTTATGCCAACA+AGG + tig0027833:1566-1585 None:intergenic 35.0%
TGTTGGCATAAATGCTCAAA+AGG - tig0027833:1566-1585 Msa1435980:intron 35.0%
!! ATTTTAAGAGACCTTAAGGG+AGG - tig0027833:1732-1751 Msa1435980:intron 35.0%
ATAGACAATAACCTCCCTTA+AGG + tig0027833:1746-1765 None:intergenic 35.0%
ACAAGTGCAAAACTAAAAGC+CGG + tig0027833:1938-1957 None:intergenic 35.0%
! GCAAATAGTAAGGGTTTGTT+TGG - tig0027833:1963-1982 Msa1435980:CDS 35.0%
! AAGGGTTTGTTTGGGAATTT+AGG - tig0027833:1972-1991 Msa1435980:CDS 35.0%
GTTTGTTTGGGAATTTAGGA+GGG - tig0027833:1976-1995 Msa1435980:CDS 35.0%
TTTGTTTGGGAATTTAGGAG+GGG - tig0027833:1977-1996 Msa1435980:CDS 35.0%
!!! TGCCTGTAGGTTATTTTTTG+GGG - tig0027833:2539-2558 Msa1435980:intron 35.0%
!!! TGTAGGTTATTTTTTGGGGA+GGG - tig0027833:2543-2562 Msa1435980:intron 35.0%
CAATTATAAGGATAGAGGGA+AGG - tig0027833:2639-2658 Msa1435980:intron 35.0%
!!! TGCAATCCTAATTTTTTGGC+TGG + tig0027833:2716-2735 None:intergenic 35.0%
! TTGATGGTCATAGTAATGAG+TGG - tig0027833:2801-2820 Msa1435980:intron 35.0%
!!! ACTAGTTTTATGTCCTCTTC+TGG - tig0027833:2943-2962 Msa1435980:intron 35.0%
! GTCTTCTATTTTCCACCTTA+TGG - tig0027833:3091-3110 Msa1435980:intron 35.0%
! ATACGTGCATCCTTTTATAC+AGG - tig0027833:3137-3156 Msa1435980:intron 35.0%
TGGGACATTACCTGTATAAA+AGG + tig0027833:3150-3169 None:intergenic 35.0%
!! TTTCTTCTTCAGAAGCATCA+TGG + tig0027833:3223-3242 None:intergenic 35.0%
! GCTTCTGAAGAAGAAATTTG+GGG - tig0027833:3227-3246 Msa1435980:intron 35.0%
! CTTCTGAAGAAGAAATTTGG+GGG - tig0027833:3228-3247 Msa1435980:intron 35.0%
! CAAGTTGAAGAAGAAAGTTG+AGG - tig0027833:3379-3398 Msa1435980:intron 35.0%
! CTTCTGAGGATAATTTCAGT+TGG + tig0027833:3452-3471 None:intergenic 35.0%
CAAAGAGAAACAATCTTCTG+AGG + tig0027833:3466-3485 None:intergenic 35.0%
! ATTGTTTCTCTTTGCCTTCA+TGG - tig0027833:3472-3491 Msa1435980:intron 35.0%
! TTGTTTCTCTTTGCCTTCAT+GGG - tig0027833:3473-3492 Msa1435980:intron 35.0%
TCAAATCAAACCTGAAAAGC+AGG + tig0027833:3533-3552 None:intergenic 35.0%
GGTGAATATTCTTTCTTCCT+AGG - tig0027833:3798-3817 Msa1435980:intron 35.0%
ATTCTTTCTTCCTAGGCTTT+AGG - tig0027833:3805-3824 Msa1435980:intron 35.0%
TGACAAATGACAAGTACATC+AGG + tig0027833:3834-3853 None:intergenic 35.0%
ACTTTAGTGACTGCTATCTT+TGG - tig0027833:3884-3903 Msa1435980:intron 35.0%
! TTCAAGTCTTCCAGTCTTTT+TGG - tig0027833:4051-4070 Msa1435980:intron 35.0%
AATATGCCATTATGCCTTGA+AGG + tig0027833:4147-4166 None:intergenic 35.0%
CAAGGCATAATGGCATATTA+AGG - tig0027833:4148-4167 Msa1435980:intron 35.0%
CATAATGGCATATTAAGGAC+AGG - tig0027833:4153-4172 Msa1435980:intron 35.0%
TCTTAAGGTTCACCTATTCT+TGG - tig0027833:4205-4224 Msa1435980:intron 35.0%
!!! ATGCAATTTTTTCAGGCACA+TGG + tig0027833:4285-4304 None:intergenic 35.0%
CAGCAACATTGTTGGAATAT+TGG + tig0027833:4542-4561 None:intergenic 35.0%
!!! TGTACCTTTTTCAAGTGAAG+TGG - tig0027833:4625-4644 Msa1435980:intron 35.0%
ACCACTATGCTAACAATAGT+AGG + tig0027833:4747-4766 None:intergenic 35.0%
!!! TTTTGGTTCATGGTGTGTTA+TGG - tig0027833:4865-4884 Msa1435980:five_prime_UTR 35.0%
!!! CAGTTTTTTGGAGAGGAAAG+CGG + tig0027833:666-685 None:intergenic 40.0%
!!! AGGAGTACAGTTTTTTGGAG+AGG + tig0027833:673-692 None:intergenic 40.0%
! ATTCCTTGTATTTTCCCGGA+GGG + tig0027833:796-815 None:intergenic 40.0%
! TGGGATTCCTTGTATTTTCC+CGG + tig0027833:800-819 None:intergenic 40.0%
! ATTTAGAATAACCTCAGGGG+AGG + tig0027833:991-1010 None:intergenic 40.0%
! TAAGAAAATAGAGGGGGTGT+TGG + tig0027833:1018-1037 None:intergenic 40.0%
! CAGAAGTTTAACGGTGTCAA+GGG + tig0027833:1061-1080 None:intergenic 40.0%
! ACAGAAGTTTAACGGTGTCA+AGG + tig0027833:1062-1081 None:intergenic 40.0%
!! TAGGCGGTGTTATATGTTTC+AGG + tig0027833:1096-1115 None:intergenic 40.0%
CATTTCCTCCATTCAATGAG+CGG - tig0027833:1141-1160 Msa1435980:intron 40.0%
AACGACCCAAATGGAAAATG+TGG + tig0027833:1167-1186 None:intergenic 40.0%
!! TCTCTTTTGTTCTAGTTGGC+TGG - tig0027833:1209-1228 Msa1435980:intron 40.0%
!!! CGTCAATGGTTTTGAAGAAG+AGG - tig0027833:1262-1281 Msa1435980:intron 40.0%
ATTTAAAGAGATCTCAGGGG+AGG - tig0027833:1793-1812 Msa1435980:intron 40.0%
!!! GGTTTTATTCCGTTGAATCG+TGG - tig0027833:1875-1894 Msa1435980:CDS 40.0%
GATACACTTCCACGATTCAA+CGG + tig0027833:1887-1906 None:intergenic 40.0%
! GGTTTGTTTGGGAATTTAGG+AGG - tig0027833:1975-1994 Msa1435980:CDS 40.0%
AGGGGAGGGTTTAAAAACTA+GGG - tig0027833:1995-2014 Msa1435980:CDS 40.0%
GAGGGTTTAAAAACTAGGGA+AGG - tig0027833:1999-2018 Msa1435980:CDS 40.0%
GGTTTAAAAACTAGGGAAGG+AGG - tig0027833:2002-2021 Msa1435980:CDS 40.0%
TGCAATCCCGCATTTATATG+TGG - tig0027833:2184-2203 Msa1435980:intron 40.0%
AGCAATGATCCCTTAACCTT+TGG - tig0027833:2353-2372 Msa1435980:intron 40.0%
TACATGCTGAGAAGCAAACA+AGG - tig0027833:2504-2523 Msa1435980:intron 40.0%
GCTTTGATAAGTATGCCTGT+AGG - tig0027833:2526-2545 Msa1435980:intron 40.0%
CTCCCCAAAAAATAACCTAC+AGG + tig0027833:2544-2563 None:intergenic 40.0%
!!! CTGTAGGTTATTTTTTGGGG+AGG - tig0027833:2542-2561 Msa1435980:intron 40.0%
!!! GTAGGTTATTTTTTGGGGAG+GGG - tig0027833:2544-2563 Msa1435980:intron 40.0%
!!! TAGGTTATTTTTTGGGGAGG+GGG - tig0027833:2545-2564 Msa1435980:intron 40.0%
TCCTGACCAGCCAAAAAATT+AGG - tig0027833:2707-2726 Msa1435980:intron 40.0%
!!! TCCTAATTTTTTGGCTGGTC+AGG + tig0027833:2711-2730 None:intergenic 40.0%
! CAGTTGGCTCCAACTAAAAT+CGG + tig0027833:2749-2768 None:intergenic 40.0%
!! CACTAACTCTGGGGAATTTT+GGG + tig0027833:3169-3188 None:intergenic 40.0%
!! ACACTAACTCTGGGGAATTT+TGG + tig0027833:3170-3189 None:intergenic 40.0%
AATTCCCCAGAGTTAGTGTT+TGG - tig0027833:3171-3190 Msa1435980:intron 40.0%
ATTCCCCAGAGTTAGTGTTT+GGG - tig0027833:3172-3191 Msa1435980:intron 40.0%
TTTCTGTTGCAACAGTATGC+TGG - tig0027833:3260-3279 Msa1435980:intron 40.0%
!! TGATGGCTAGTTTCGTACAA+AGG - tig0027833:3330-3349 Msa1435980:intron 40.0%
TTTAGCACATTCTTGACCCA+TGG + tig0027833:3413-3432 None:intergenic 40.0%
CTGAGGATAATTTCAGTTGG+TGG + tig0027833:3449-3468 None:intergenic 40.0%
GAACAACTGTAATTCACCCA+CGG + tig0027833:3748-3767 None:intergenic 40.0%
TCTTGTGGCTATCAGACTTT+CGG - tig0027833:3959-3978 Msa1435980:intron 40.0%
TAAGGACAGGTGAATGTGTT+TGG - tig0027833:4166-4185 Msa1435980:intron 40.0%
CAGTACTATTCTCTTGCTAC+AGG - tig0027833:4310-4329 Msa1435980:intron 40.0%
TACTATTCTCTTGCTACAGG+TGG - tig0027833:4313-4332 Msa1435980:intron 40.0%
ATTGGGTGAGTGGTATAACT+TGG - tig0027833:4404-4423 Msa1435980:intron 40.0%
! TTATAGGTTTGGAGCTCTTG+TGG - tig0027833:4486-4505 Msa1435980:CDS 40.0%
CCAACGATGTTAAGAGTTCA+AGG + tig0027833:4579-4598 None:intergenic 40.0%
CCTTGAACTCTTAACATCGT+TGG - tig0027833:4576-4595 Msa1435980:intron 40.0%
! GTTGCCACTTCACTTGAAAA+AGG + tig0027833:4632-4651 None:intergenic 40.0%
GCTAACAATAGTAGGCAACT+TGG + tig0027833:4739-4758 None:intergenic 40.0%
GCCTACTATTGTTAGCATAG+TGG - tig0027833:4743-4762 Msa1435980:five_prime_UTR 40.0%
AATCTCAATCTGAGCGTGTT+TGG + tig0027833:4929-4948 None:intergenic 40.0%
CTTTCGTTCGTTCTGCAAGA+GGG + tig0027833:498-517 None:intergenic 45.0%
AGGAAAAGAACGCGTTCCTT+TGG - tig0027833:516-535 Msa1435980:three_prime_UTR 45.0%
!!! TTTTTTGGAGAGGAAAGCGG+TGG + tig0027833:663-682 None:intergenic 45.0%
! TTCCTTGTATTTTCCCGGAG+GGG + tig0027833:795-814 None:intergenic 45.0%
! GATTCCTTGTATTTTCCCGG+AGG + tig0027833:797-816 None:intergenic 45.0%
GAAACTTGGCGAAACGTTGT+GGG + tig0027833:819-838 None:intergenic 45.0%
AATTACATTCACCTCCCCTG+AGG - tig0027833:977-996 Msa1435980:CDS 45.0%
! TTTAACGGTGTCAAGGGCAA+GGG + tig0027833:1055-1074 None:intergenic 45.0%
AAATGTGGCCGCTCATTGAA+TGG + tig0027833:1152-1171 None:intergenic 45.0%
! AGCGGCCACATTTTCCATTT+GGG - tig0027833:1159-1178 Msa1435980:intron 45.0%
TTCCATTTGGGTCGTTTGCT+TGG - tig0027833:1171-1190 Msa1435980:intron 45.0%
TCCATTTGGGTCGTTTGCTT+GGG - tig0027833:1172-1191 Msa1435980:intron 45.0%
TCCAACTTGGCGATGACATT+TGG + tig0027833:1365-1384 None:intergenic 45.0%
CAAAATCGGCGATTCCAACT+TGG + tig0027833:1378-1397 None:intergenic 45.0%
!! TTGTTCATTGGTAGCGCCTT+TGG - tig0027833:1417-1436 Msa1435980:intron 45.0%
TTTGGGAATTTAGGAGGGGA+GGG - tig0027833:1981-2000 Msa1435980:CDS 45.0%
GAGGGGAGGGTTTAAAAACT+AGG - tig0027833:1994-2013 Msa1435980:CDS 45.0%
AGGAGGAAGCTGAAGGAATA+TGG - tig0027833:2019-2038 Msa1435980:CDS 45.0%
! GAGCTAGTGCTGTTAGATAG+TGG - tig0027833:2092-2111 Msa1435980:CDS 45.0%
! CTGTTAGATAGTGGTCATCG+TGG - tig0027833:2101-2120 Msa1435980:CDS 45.0%
CGCTTCACAAATTGCTATGG+CGG + tig0027833:2138-2157 None:intergenic 45.0%
TGGCGCTTCACAAATTGCTA+TGG + tig0027833:2141-2160 None:intergenic 45.0%
TATAGTGCCGCAATGGTAGA+TGG + tig0027833:2161-2180 None:intergenic 45.0%
ATCTACCATTGCGGCACTAT+AGG - tig0027833:2160-2179 Msa1435980:CDS 45.0%
!! TCTGGCAGTTTATGGTGGAT+TGG + tig0027833:2218-2237 None:intergenic 45.0%
AGCTTGAACTGATGTTGCAG+TGG + tig0027833:2243-2262 None:intergenic 45.0%
ACTGCAACATCAGTTCAAGC+TGG - tig0027833:2242-2261 Msa1435980:intron 45.0%
ATCCTGAAGGTGGAAAAGGA+GGG + tig0027833:2331-2350 None:intergenic 45.0%
CTACATCCTGAAGGTGGAAA+AGG + tig0027833:2335-2354 None:intergenic 45.0%
TCATTGCTACATCCTGAAGG+TGG + tig0027833:2341-2360 None:intergenic 45.0%
GGATCATTGCTACATCCTGA+AGG + tig0027833:2344-2363 None:intergenic 45.0%
TGAAATAGCCCAAGCTAAGC+AGG - tig0027833:2584-2603 Msa1435980:intron 45.0%
AATGACGTCCTGCTTAGCTT+GGG + tig0027833:2595-2614 None:intergenic 45.0%
AAATGACGTCCTGCTTAGCT+TGG + tig0027833:2596-2615 None:intergenic 45.0%
TCCTCTTCTGGTAACTAGCT+GGG - tig0027833:2955-2974 Msa1435980:intron 45.0%
GATCCCAAACACTAACTCTG+GGG + tig0027833:3178-3197 None:intergenic 45.0%
GGATCCCAAACACTAACTCT+GGG + tig0027833:3179-3198 None:intergenic 45.0%
AGGATCCCAAACACTAACTC+TGG + tig0027833:3180-3199 None:intergenic 45.0%
AAGCATCATGGCTAACACCA+AGG + tig0027833:3211-3230 None:intergenic 45.0%
AACAGTATGCTGGACATGAG+AGG - tig0027833:3270-3289 Msa1435980:intron 45.0%
! GAGGAGCGTAGAATCAATAG+AGG - tig0027833:3289-3308 Msa1435980:intron 45.0%
!! TGGCTAGTTTCGTACAAAGG+AGG - tig0027833:3333-3352 Msa1435980:intron 45.0%
TTTCTCTTTGCCTTCATGGG+TGG - tig0027833:3476-3495 Msa1435980:intron 45.0%
!! TGAAACTGGACCTGCTTTTC+AGG - tig0027833:3520-3539 Msa1435980:intron 45.0%
TTTCAGAATAGCCACTGAGC+TGG - tig0027833:3931-3950 Msa1435980:intron 45.0%
CTATTCTTGGAGTCACGTCA+GGG - tig0027833:4218-4237 Msa1435980:intron 45.0%
TATTCTTGGAGTCACGTCAG+GGG - tig0027833:4219-4238 Msa1435980:intron 45.0%
! TTGGCTAGAGCGTTCGTTAT+TGG - tig0027833:4386-4405 Msa1435980:intron 45.0%
! TGGCTAGAGCGTTCGTTATT+GGG - tig0027833:4387-4406 Msa1435980:intron 45.0%
AGAGTTCAAGGCTCCAAGTT+GGG + tig0027833:4567-4586 None:intergenic 45.0%
AAGAGTTCAAGGCTCCAAGT+TGG + tig0027833:4568-4587 None:intergenic 45.0%
!! ATAAAAAAATAAAGAAATAT+AGG - tig0027833:3630-3649 Msa1435980:intron 5.0%
! GTGGTAGTTTGCAGTGCACA+CGG - tig0027833:404-423 Msa1435980:three_prime_UTR 50.0%
CCTTTCGTTCGTTCTGCAAG+AGG + tig0027833:499-518 None:intergenic 50.0%
CCTCTTGCAGAACGAACGAA+AGG - tig0027833:496-515 Msa1435980:three_prime_UTR 50.0%
AAGAACGCGTTCCTTTGGTC+CGG - tig0027833:521-540 Msa1435980:three_prime_UTR 50.0%
GAGCATGTTGTTGAACTCGC+CGG + tig0027833:543-562 None:intergenic 50.0%
AGGAAAGCGGTGGCGAAATT+GGG + tig0027833:653-672 None:intergenic 50.0%
CGAAACTTGGCGAAACGTTG+TGG + tig0027833:820-839 None:intergenic 50.0%
TGCGCTGTAGACACACCATA+TGG - tig0027833:852-871 Msa1435980:intron 50.0%
GCTGTAGACACACCATATGG+AGG - tig0027833:855-874 Msa1435980:intron 50.0%
! GTTTAACGGTGTCAAGGGCA+AGG + tig0027833:1056-1075 None:intergenic 50.0%
! GAGCGGCCACATTTTCCATT+TGG - tig0027833:1158-1177 Msa1435980:intron 50.0%
ACCCAAGCAAACGACCCAAA+TGG + tig0027833:1176-1195 None:intergenic 50.0%
CATTGACGAACGGTCTCACT+TGG + tig0027833:1250-1269 None:intergenic 50.0%
CAAGTGAGACCGTTCGTCAA+TGG - tig0027833:1248-1267 Msa1435980:intron 50.0%
GCCAAATGTCATCGCCAAGT+TGG - tig0027833:1361-1380 Msa1435980:intron 50.0%
GTTTGGGAATTTAGGAGGGG+AGG - tig0027833:1980-1999 Msa1435980:CDS 50.0%
GATGTACTAGAGCCAAGCAC+AGG - tig0027833:2064-2083 Msa1435980:CDS 50.0%
CTAGCTCAACAACCTGTGCT+TGG + tig0027833:2079-2098 None:intergenic 50.0%
! TGAAGCGCCATCTACCATTG+CGG - tig0027833:2151-2170 Msa1435980:CDS 50.0%
TGCAACCTATAGTGCCGCAA+TGG + tig0027833:2168-2187 None:intergenic 50.0%
TGGTGTCTGGCAGTTTATGG+TGG + tig0027833:2223-2242 None:intergenic 50.0%
CAGTGGTGTCTGGCAGTTTA+TGG + tig0027833:2226-2245 None:intergenic 50.0%
ACTGATGTTGCAGTGGTGTC+TGG + tig0027833:2236-2255 None:intergenic 50.0%
TGAAGGTGGAAAAGGAGGGT+GGG + tig0027833:2327-2346 None:intergenic 50.0%
CATCCTGAAGGTGGAAAAGG+AGG + tig0027833:2332-2351 None:intergenic 50.0%
GCTAAGCAGGACGTCATTTC+AGG - tig0027833:2597-2616 Msa1435980:intron 50.0%
! AAGGATAGAGGGAAGGCATG+CGG - tig0027833:2646-2665 Msa1435980:intron 50.0%
CTCTTCGACAGAGTGACAGT+TGG + tig0027833:2765-2784 None:intergenic 50.0%
CAACTGTCACTCTGTCGAAG+AGG - tig0027833:2763-2782 Msa1435980:intron 50.0%
GTCCTCTTCTGGTAACTAGC+TGG - tig0027833:2954-2973 Msa1435980:intron 50.0%
ACCCAGCTAGTTACCAGAAG+AGG + tig0027833:2959-2978 None:intergenic 50.0%
TCTTCTGGTAACTAGCTGGG+TGG - tig0027833:2958-2977 Msa1435980:intron 50.0%
TGGTAACTAGCTGGGTGGTT+TGG - tig0027833:2963-2982 Msa1435980:intron 50.0%
CACATTCTTGACCCATGGTG+GGG + tig0027833:3408-3427 None:intergenic 50.0%
GCACATTCTTGACCCATGGT+GGG + tig0027833:3409-3428 None:intergenic 50.0%
AGCACATTCTTGACCCATGG+TGG + tig0027833:3410-3429 None:intergenic 50.0%
CATCAGGCATCCTAAAGCCT+AGG + tig0027833:3818-3837 None:intergenic 50.0%
ACAAGACATGACCAGCTCAG+TGG + tig0027833:3945-3964 None:intergenic 50.0%
ACTGAGCTGGTCATGTCTTG+TGG - tig0027833:3944-3963 Msa1435980:intron 50.0%
CCTGACGTGACTCCAAGAAT+AGG + tig0027833:4220-4239 None:intergenic 50.0%
CCTATTCTTGGAGTCACGTC+AGG - tig0027833:4217-4236 Msa1435980:intron 50.0%
GCTACAGGTGGCAATCTCTT+TGG - tig0027833:4325-4344 Msa1435980:intron 50.0%
AGCGTTCGTTATTGGGTGAG+TGG - tig0027833:4394-4413 Msa1435980:intron 50.0%
! ATGGGTCTCTGGTTCATTGC+TGG - tig0027833:4513-4532 Msa1435980:CDS 50.0%
TCGTTCGTTCTGCAAGAGGG+AGG + tig0027833:495-514 None:intergenic 55.0%
TGTTGAACTCGCCGGACCAA+AGG + tig0027833:535-554 None:intergenic 55.0%
GAGGAAAGCGGTGGCGAAAT+TGG + tig0027833:654-673 None:intergenic 55.0%
TGTGGCCGCTCATTGAATGG+AGG + tig0027833:1149-1168 None:intergenic 55.0%
CTAGGGAAGGAGGAAGCTGA+AGG - tig0027833:2012-2031 Msa1435980:CDS 55.0%
CTGAAGGTGGAAAAGGAGGG+TGG + tig0027833:2328-2347 None:intergenic 55.0%
! CACCCTCCTTTTCCACCTTC+AGG - tig0027833:2326-2345 Msa1435980:intron 55.0%
! AGGATAGAGGGAAGGCATGC+GGG - tig0027833:2647-2666 Msa1435980:intron 55.0%
! GGAGCACTCTCCCTGTTGTA+TGG + tig0027833:2690-2709 None:intergenic 55.0%
!! CTAACACCAAGGCGTCGGTA+AGG + tig0027833:3200-3219 None:intergenic 55.0%
CATGGCTAACACCAAGGCGT+CGG + tig0027833:3205-3224 None:intergenic 55.0%
AAGTTGAGGAGTCCCCACCA+TGG - tig0027833:3393-3412 Msa1435980:intron 55.0%
AGTTGAGGAGTCCCCACCAT+GGG - tig0027833:3394-3413 Msa1435980:intron 55.0%
TCTTTGCCTTCATGGGTGGC+TGG - tig0027833:3480-3499 Msa1435980:intron 55.0%
AATGCTCCAGCCACCCATGA+AGG + tig0027833:3489-3508 None:intergenic 55.0%
! AGGTTTGGAGCTCTTGTGGC+TGG - tig0027833:4490-4509 Msa1435980:CDS 55.0%
TTGGAGCTCTTGTGGCTGGA+TGG - tig0027833:4494-4513 Msa1435980:CDS 55.0%
TGGAGCTCTTGTGGCTGGAT+GGG - tig0027833:4495-4514 Msa1435980:CDS 55.0%
GTTGGGCGCAGCAACATTGT+TGG + tig0027833:4550-4569 None:intergenic 55.0%
CAATGTTGCTGCGCCCAACT+TGG - tig0027833:4551-4570 Msa1435980:CDS 55.0%
CACACGGCGCAGTGTAGCAT+TGG - tig0027833:420-439 Msa1435980:three_prime_UTR 60.0%
! ACGGCGCAGTGTAGCATTGG+AGG - tig0027833:423-442 Msa1435980:three_prime_UTR 60.0%
TTGGATTCTGCAGGCCCCTC+CGG - tig0027833:778-797 Msa1435980:CDS 60.0%
GGCCCCTCCGGGAAAATACA+AGG - tig0027833:790-809 Msa1435980:CDS 60.0%
! AACGGTGTCAAGGGCAAGGG+AGG + tig0027833:1052-1071 None:intergenic 60.0%
GGAAAAGGAGGGTGGGAGCA+AGG + tig0027833:2320-2339 None:intergenic 60.0%
! GGATAGAGGGAAGGCATGCG+GGG - tig0027833:2648-2667 Msa1435980:intron 60.0%
! GATAGAGGGAAGGCATGCGG+GGG - tig0027833:2649-2668 Msa1435980:intron 60.0%
TGGGATCCTTACCGACGCCT+TGG - tig0027833:3191-3210 Msa1435980:intron 60.0%
CTTGTGGCTGGATGGGTCTC+TGG - tig0027833:4502-4521 Msa1435980:CDS 60.0%
TGGATTCTGCAGGCCCCTCC+GGG - tig0027833:779-798 Msa1435980:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0027833 gene 391 4970 391 ID=Msa1435980;Name=Msa1435980
tig0027833 mRNA 391 4970 391 ID=Msa1435980-mRNA-1;Parent=Msa1435980;Name=Msa1435980-mRNA-1;_AED=0.08;_eAED=0.08;_QI=235|1|1|1|1|1|5|328|251
tig0027833 exon 391 869 391 ID=Msa1435980-mRNA-1:exon:10038;Parent=Msa1435980-mRNA-1
tig0027833 exon 953 1029 953 ID=Msa1435980-mRNA-1:exon:10037;Parent=Msa1435980-mRNA-1
tig0027833 exon 1820 2202 1820 ID=Msa1435980-mRNA-1:exon:10036;Parent=Msa1435980-mRNA-1
tig0027833 exon 4485 4570 4485 ID=Msa1435980-mRNA-1:exon:10035;Parent=Msa1435980-mRNA-1
tig0027833 exon 4677 4970 4677 ID=Msa1435980-mRNA-1:exon:10034;Parent=Msa1435980-mRNA-1
tig0027833 five_prime_UTR 4736 4970 4736 ID=Msa1435980-mRNA-1:five_prime_utr;Parent=Msa1435980-mRNA-1
tig0027833 CDS 4677 4735 4677 ID=Msa1435980-mRNA-1:cds;Parent=Msa1435980-mRNA-1
tig0027833 CDS 4485 4570 4485 ID=Msa1435980-mRNA-1:cds;Parent=Msa1435980-mRNA-1
tig0027833 CDS 1820 2202 1820 ID=Msa1435980-mRNA-1:cds;Parent=Msa1435980-mRNA-1
tig0027833 CDS 953 1029 953 ID=Msa1435980-mRNA-1:cds;Parent=Msa1435980-mRNA-1
tig0027833 CDS 719 869 719 ID=Msa1435980-mRNA-1:cds;Parent=Msa1435980-mRNA-1
tig0027833 three_prime_UTR 391 718 391 ID=Msa1435980-mRNA-1:three_prime_utr;Parent=Msa1435980-mRNA-1
Gene Sequence

>Msa1435980

ATGGCTTCTCTTTCACTTTCATCTCCCAATTTCGCCACCGCTTTCCTCTCCAAAAAACTGCCCCTCCGGGAAAATACAAGGAATCCCACAACGTTTCGCCAAGTTTCGTTTCGTACTAAGTGCGCTGTAGACACACCATATGGAGGTAATGTCCCAAAATTCCCCAGAGTTAGTGTTTGGGATCCTTACCGACGCCTTGGTGTTAGCCATGATGCTTCTGAAGAAGAAATTTGGGGGTCAAGAAATTTTCTGTTGCAACAGTATGCTGGACATGAGAGGAGCGTAGAATCAATAGAGGCTGCTTTTGAAAAAATATTGATGGCTAGTTTCGTACAAAGGAGGAAAACAAAAATTAATTTGAAAAGCAAGTTGAAGAAGAAAGTTGAGGAGTCCCCACCATGGGTCAAGAATGTGCTAAACATTGTTGAATTTCCACCAACTGAAATTATCCTCAGAAGATTGTTTCTCTTTGCCTTCATGGGTGGCTGGAGCATTATGAATTCTGCTGAAACTGGACCTGCTTTTCAGGTGGCAATCTCTTTGGCTGCTTGCATATACTTCCTAAATGAAAAGACAAAGAGTTTGGCTAGAGCGTTCGTTATTGGGTTTGGAGCTCTTGTGGCTGGATGGGTCTCTGGTTCATTGCTGGTACCCAATATTCCAACAATGTTGCTGCGCCCAACTTGGAGCCTTGAACTCTTAACATCGTTGGTAGTTTACTTTTTCTTGTTCATTGGTTGTACCTTTTTCAAGTGA

Protein sequence

>Msa1435980

MASLSLSSPNFATAFLSKKLPLRENTRNPTTFRQVSFRTKCAVDTPYGGNVPKFPRVSVWDPYRRLGVSHDASEEEIWGSRNFLLQQYAGHERSVESIEAAFEKILMASFVQRRKTKINLKSKLKKKVEESPPWVKNVLNIVEFPPTEIILRRLFLFAFMGGWSIMNSAETGPAFQVAISLAACIYFLNEKTKSLARAFVIGFGALVAGWVSGSLLVPNIPTMLLRPTWSLELLTSLVVYFFLFIGCTFFK*