AlfalfaGEDB | Msa1435980

M. sativa cultivar zhongmu-4 / Msa1435980

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006457 GO:0006996 GO:0007275 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009528 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009639 GO:0009640 GO:0009657 GO:0009658 GO:0009704 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0033157 GO:0034357 GO:0034762 GO:0034764 GO:0042170 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048518 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0055035 GO:0060341 GO:0061077 GO:0061458 GO:0065007 GO:0070201 GO:0071840 GO:0090087 GO:0090316 GO:1903533 GO:1903827 GO:1903829 GO:1904215 GO:1904216 GO:1904589 GO:1904591 GO:1904951
PFAM: PF11833.11

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1435980	XP_003609152.1	98.008	251	5	0	1	251	1	251	6.89e-177	496

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1435980	sp\|Q9FN50\|CPP1_ARATH	76.233	223	50	2	32	251	36	258	6.78e-123	353

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1435980	G7JT27	98.008	251	5	0	1	251	1	251	3.29e-177	496

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001510	Msa1435980	0.809947	1.471018e-50	-8.615850e-47
Msa0001540	Msa1435980	0.842728	2.166038e-58	-8.615850e-47
Msa0002060	Msa1435980	0.836266	1.035060e-56	-8.615850e-47
Msa0007160	Msa1435980	0.803683	3.101413e-49	-8.615850e-47
Msa0009210	Msa1435980	0.848996	4.291556e-60	-8.615850e-47
Msa0012460	Msa1435980	0.832149	1.114405e-55	-8.615850e-47
Msa0013810	Msa1435980	0.812515	4.079010e-51	-8.615850e-47
Msa0015720	Msa1435980	0.801868	7.348463e-49	-8.615850e-47
Msa0016110	Msa1435980	0.824240	8.985313e-54	-8.615850e-47
Msa0016160	Msa1435980	0.822556	2.224073e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1435980	MtrunA17_Chr4g0062111	98.008	251	5	0	1	251	1	251	0.0	496
Msa1435980	MtrunA17_Chr8g0372221	38.393	224	129	5	33	250	61	281	3.85e-45	152

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1435980	AT5G23040.2	76.233	223	50	2	32	251	36	258	6.89e-124	353
Msa1435980	AT5G23040.1	76.233	223	50	2	32	251	36	258	6.89e-124	353
Msa1435980	AT3G51140.1	33.473	239	145	4	17	251	50	278	5.34e-42	145
Msa1435980	AT3G51140.2	40.523	153	81	3	54	202	83	229	3.06e-34	123
Msa1435980	AT2G20920.1	27.500	200	123	5	38	216	52	250	2.49e-11	62.8

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Find 90 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGAAAAGACAAAGAGTT+TGG	0.389051	tig0027833:-972	Msa1435980:CDS
AACAGTATGCTGGACATGAG+AGG	0.646098	tig0027833:-2069	Msa1435980:CDS
AAGAACGCGTTCCTTTGGTC+CGG	0.530727	tig0027833:-4818	Msa1435980:five_prime_UTR
AAGAGTTCAAGGCTCCAAGT+TGG	0.565418	tig0027833:+774	None:intergenic
AAGCATCATGGCTAACACCA+AGG	0.688521	tig0027833:+2131	None:intergenic
AAGTTGAGGAGTCCCCACCA+TGG	0.688946	tig0027833:-1946	Msa1435980:CDS
AATCTCAATCTGAGCGTGTT+TGG	0.404163	tig0027833:+413	None:intergenic
AATGCTCCAGCCACCCATGA+AGG	0.539964	tig0027833:+1853	None:intergenic
AATTCCCCAGAGTTAGTGTT+TGG	0.356525	tig0027833:-2168	Msa1435980:CDS
ACACTAACTCTGGGGAATTT+TGG	0.086811	tig0027833:+2172	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGCTCTTCAATTAGTGATT+GGG	-	tig0027833:557-576	Msa1435980:three_prime_UTR	30.0%
TCTCAATTACAACAACAACA+TGG	-	tig0027833:607-626	Msa1435980:three_prime_UTR	30.0%
GCTAATTAAGAAAATAGAGG+GGG	+	tig0027833:1024-1043	None:intergenic	30.0%
TGACAAAATTCAGAATTAGG+CGG	+	tig0027833:1112-1131	None:intergenic	30.0%
ATTGAATGGAGGAAATGAAA+AGG	+	tig0027833:1138-1157	None:intergenic	30.0%
GATTCCCAAAAAATACTTCA+AGG	+	tig0027833:1292-1311	None:intergenic	30.0%
ATCAGAAACATGAGAATAAG+AGG	-	tig0027833:1622-1641	Msa1435980:intron	30.0%
ATTAATTGTGTTAACCGAGA+AGG	-	tig0027833:1696-1715	Msa1435980:intron	30.0%
TTAATTGTGTTAACCGAGAA+GGG	-	tig0027833:1697-1716	Msa1435980:intron	30.0%
TAGATAAACAAATCCCTTCT+CGG	+	tig0027833:1713-1732	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0027833	gene	391	4970	391	ID=Msa1435980;Name=Msa1435980
tig0027833	mRNA	391	4970	391	ID=Msa1435980-mRNA-1;Parent=Msa1435980;Name=Msa1435980-mRNA-1;_AED=0.08;_eAED=0.08;_QI=235\|1\|1\|1\|1\|1\|5\|328\|251
tig0027833	exon	391	869	391	ID=Msa1435980-mRNA-1:exon:10038;Parent=Msa1435980-mRNA-1
tig0027833	exon	953	1029	953	ID=Msa1435980-mRNA-1:exon:10037;Parent=Msa1435980-mRNA-1
tig0027833	exon	1820	2202	1820	ID=Msa1435980-mRNA-1:exon:10036;Parent=Msa1435980-mRNA-1
tig0027833	exon	4485	4570	4485	ID=Msa1435980-mRNA-1:exon:10035;Parent=Msa1435980-mRNA-1
tig0027833	exon	4677	4970	4677	ID=Msa1435980-mRNA-1:exon:10034;Parent=Msa1435980-mRNA-1
tig0027833	five_prime_UTR	4736	4970	4736	ID=Msa1435980-mRNA-1:five_prime_utr;Parent=Msa1435980-mRNA-1
tig0027833	CDS	4677	4735	4677	ID=Msa1435980-mRNA-1:cds;Parent=Msa1435980-mRNA-1
tig0027833	CDS	4485	4570	4485	ID=Msa1435980-mRNA-1:cds;Parent=Msa1435980-mRNA-1
tig0027833	CDS	1820	2202	1820	ID=Msa1435980-mRNA-1:cds;Parent=Msa1435980-mRNA-1
tig0027833	CDS	953	1029	953	ID=Msa1435980-mRNA-1:cds;Parent=Msa1435980-mRNA-1
tig0027833	CDS	719	869	719	ID=Msa1435980-mRNA-1:cds;Parent=Msa1435980-mRNA-1
tig0027833	three_prime_UTR	391	718	391	ID=Msa1435980-mRNA-1:three_prime_utr;Parent=Msa1435980-mRNA-1

Gene Sequence

>Msa1435980

ATGGCTTCTCTTTCACTTTCATCTCCCAATTTCGCCACCGCTTTCCTCTCCAAAAAACTGCCCCTCCGGGAAAATACAAGGAATCCCACAACGTTTCGCCAAGTTTCGTTTCGTACTAAGTGCGCTGTAGACACACCATATGGAGGTAATGTCCCAAAATTCCCCAGAGTTAGTGTTTGGGATCCTTACCGACGCCTTGGTGTTAGCCATGATGCTTCTGAAGAAGAAATTTGGGGGTCAAGAAATTTTCTGTTGCAACAGTATGCTGGACATGAGAGGAGCGTAGAATCAATAGAGGCTGCTTTTGAAAAAATATTGATGGCTAGTTTCGTACAAAGGAGGAAAACAAAAATTAATTTGAAAAGCAAGTTGAAGAAGAAAGTTGAGGAGTCCCCACCATGGGTCAAGAATGTGCTAAACATTGTTGAATTTCCACCAACTGAAATTATCCTCAGAAGATTGTTTCTCTTTGCCTTCATGGGTGGCTGGAGCATTATGAATTCTGCTGAAACTGGACCTGCTTTTCAGGTGGCAATCTCTTTGGCTGCTTGCATATACTTCCTAAATGAAAAGACAAAGAGTTTGGCTAGAGCGTTCGTTATTGGGTTTGGAGCTCTTGTGGCTGGATGGGTCTCTGGTTCATTGCTGGTACCCAATATTCCAACAATGTTGCTGCGCCCAACTTGGAGCCTTGAACTCTTAACATCGTTGGTAGTTTACTTTTTCTTGTTCATTGGTTGTACCTTTTTCAAGTGA

Protein sequence

>Msa1435980

MASLSLSSPNFATAFLSKKLPLRENTRNPTTFRQVSFRTKCAVDTPYGGNVPKFPRVSVWDPYRRLGVSHDASEEEIWGSRNFLLQQYAGHERSVESIEAAFEKILMASFVQRRKTKINLKSKLKKKVEESPPWVKNVLNIVEFPPTEIILRRLFLFAFMGGWSIMNSAETGPAFQVAISLAACIYFLNEKTKSLARAFVIGFGALVAGWVSGSLLVPNIPTMLLRPTWSLELLTSLVVYFFLFIGCTFFK*