AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1213540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1213540 MtrunA17_Chr4g0062111 98.008 251 5 0 1 251 1 251 0.0 496
Msa1213540 MtrunA17_Chr8g0372221 38.393 224 129 5 33 250 61 281 3.85e-45 152
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1213540 AT5G23040.2 76.233 223 50 2 32 251 36 258 6.89e-124 353
Msa1213540 AT5G23040.1 76.233 223 50 2 32 251 36 258 6.89e-124 353
Msa1213540 AT3G51140.1 33.473 239 145 4 17 251 50 278 5.34e-42 145
Msa1213540 AT3G51140.2 40.523 153 81 3 54 202 83 229 3.06e-34 123
Msa1213540 AT2G20920.1 27.500 200 123 5 38 216 52 250 2.49e-11 62.8

Find 90 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACTAACTCTGGGGAATTT+TGG 0.086811 8_1:+73689739 None:intergenic
CAACTGATTTGTTCTAATTT+TGG 0.142844 8_1:-73688058 Msa1213540:three_prime_UTR
ATGCTTCTGAAGAAGAAATT+TGG 0.165582 8_1:-73689681 Msa1213540:CDS
CAGCAACATTGTTGGAATAT+TGG 0.219376 8_1:+73688367 None:intergenic
GAGGAAAGCGGTGGCGAAAT+TGG 0.249902 8_1:+73692253 None:intergenic
TTGGCTAGAGCGTTCGTTAT+TGG 0.284075 8_1:-73688520 Msa1213540:CDS
GCTACAGGTGGCAATCTCTT+TGG 0.284234 8_1:-73688581 Msa1213540:intron
TGTACTCTTAATGAGTTTAT+AGG 0.296618 8_1:-73688226 Msa1213540:three_prime_UTR
ATTGTTTCTCTTTGCCTTCA+TGG 0.298571 8_1:-73689434 Msa1213540:CDS
GTTGCCACTTCACTTGAAAA+AGG 0.300132 8_1:+73688277 None:intergenic
AGCAACATTGTTGGAATATT+GGG 0.319394 8_1:+73688368 None:intergenic
TGGCTAGAGCGTTCGTTATT+GGG 0.329181 8_1:-73688519 Msa1213540:intron
TGCTTCTGAAGAAGAAATTT+GGG 0.335100 8_1:-73689680 Msa1213540:CDS
TTGGATTCTGCAGGCCCCTC+CGG 0.343652 8_1:-73692126 Msa1213540:intron
ATGGGTCTCTGGTTCATTGC+TGG 0.351564 8_1:-73688393 Msa1213540:CDS
AATTCCCCAGAGTTAGTGTT+TGG 0.356525 8_1:-73689735 Msa1213540:CDS
CATGCTCTTCAATTAGTGAT+TGG 0.364643 8_1:-73692348 Msa1213540:five_prime_UTR
CTTGTGGCTGGATGGGTCTC+TGG 0.370387 8_1:-73688404 Msa1213540:CDS
AGGAAAAGAACGCGTTCCTT+TGG 0.372425 8_1:-73692388 Msa1213540:five_prime_UTR
GTGGTTCTTTGATTAAATTT+CGG 0.383127 8_1:-73688144 Msa1213540:three_prime_UTR
ATTATGAATTCTGCTGAAAC+TGG 0.386488 8_1:-73689400 Msa1213540:CDS
AAATGAAAAGACAAAGAGTT+TGG 0.389051 8_1:-73688539 Msa1213540:CDS
TCTTTGCCTTCATGGGTGGC+TGG 0.389646 8_1:-73689426 Msa1213540:CDS
AGGTTTGGAGCTCTTGTGGC+TGG 0.394881 8_1:-73688416 Msa1213540:CDS
TTGTTTCTCTTTGCCTTCAT+GGG 0.395534 8_1:-73689433 Msa1213540:CDS
TTGGAGCTCTTGTGGCTGGA+TGG 0.399967 8_1:-73688412 Msa1213540:CDS
TGGAGCTCTTGTGGCTGGAT+GGG 0.401053 8_1:-73688411 Msa1213540:CDS
AATCTCAATCTGAGCGTGTT+TGG 0.404163 8_1:+73687980 None:intergenic
AGGAAAGCGGTGGCGAAATT+GGG 0.406392 8_1:+73692254 None:intergenic
ATGCTCTTCAATTAGTGATT+GGG 0.418401 8_1:-73692347 Msa1213540:five_prime_UTR
CCAACGATGTTAAGAGTTCA+AGG 0.419073 8_1:+73688330 None:intergenic
CAATGTTGCTGCGCCCAACT+TGG 0.429282 8_1:-73688355 Msa1213540:CDS
TGGATTCTGCAGGCCCCTCC+GGG 0.429772 8_1:-73692125 Msa1213540:intron
CAGTACATTGAATGAAACTA+TGG 0.433371 8_1:+73688247 None:intergenic
ATTCCCCAGAGTTAGTGTTT+GGG 0.449394 8_1:-73689734 Msa1213540:CDS
GAAACTTGGCGAAACGTTGT+GGG 0.450485 8_1:+73692088 None:intergenic
TTAATGATTATACCTCCATA+TGG 0.450789 8_1:+73692037 None:intergenic
TGGGATCCTTACCGACGCCT+TGG 0.464510 8_1:-73689715 Msa1213540:CDS
GCCTACTATTGTTAGCATAG+TGG 0.465510 8_1:-73688163 Msa1213540:three_prime_UTR
ACTCAAGATATGGCGAGGTT+AGG 0.467657 8_1:+73687946 None:intergenic
AGGATCCCAAACACTAACTC+TGG 0.471905 8_1:+73689729 None:intergenic
GTTGGGCGCAGCAACATTGT+TGG 0.472629 8_1:+73688359 None:intergenic
CTGAGGATAATTTCAGTTGG+TGG 0.473276 8_1:+73689460 None:intergenic
TTTCTGTTGCAACAGTATGC+TGG 0.473842 8_1:-73689646 Msa1213540:CDS
AGAGTTCAAGGCTCCAAGTT+GGG 0.476403 8_1:+73688342 None:intergenic
ACTTAGTACGAAACGAAACT+TGG 0.478032 8_1:+73692074 None:intergenic
CGAAACTTGGCGAAACGTTG+TGG 0.490078 8_1:+73692087 None:intergenic
ACCACTATGCTAACAATAGT+AGG 0.494634 8_1:+73688162 None:intergenic
TTTGATATGTATCTTTGCAT+CGG 0.496147 8_1:-73688099 Msa1213540:three_prime_UTR
TCAAATCAAACCTGAAAAGC+AGG 0.503028 8_1:+73689376 None:intergenic
TTATAGGTTTGGAGCTCTTG+TGG 0.505560 8_1:-73688420 Msa1213540:intron
TGCGCTGTAGACACACCATA+TGG 0.511360 8_1:-73692052 Msa1213540:CDS
TTTCTTCTTCAGAAGCATCA+TGG 0.518629 8_1:+73689686 None:intergenic
CCTTTCGTTCGTTCTGCAAG+AGG 0.519596 8_1:+73692408 None:intergenic
TTTCTCTTTGCCTTCATGGG+TGG 0.529189 8_1:-73689430 Msa1213540:CDS
AAGAACGCGTTCCTTTGGTC+CGG 0.530727 8_1:-73692383 Msa1213540:five_prime_UTR
CTTTCGTTCGTTCTGCAAGA+GGG 0.533241 8_1:+73692409 None:intergenic
GGATCCCAAACACTAACTCT+GGG 0.535496 8_1:+73689730 None:intergenic
GGCCCCTCCGGGAAAATACA+AGG 0.538659 8_1:-73692114 Msa1213540:CDS
AATGCTCCAGCCACCCATGA+AGG 0.539964 8_1:+73689420 None:intergenic
CCTTGAACTCTTAACATCGT+TGG 0.541069 8_1:-73688330 Msa1213540:CDS
CTTCTGAGGATAATTTCAGT+TGG 0.554844 8_1:+73689457 None:intergenic
AGCACATTCTTGACCCATGG+TGG 0.555534 8_1:+73689499 None:intergenic
CACATTCTTGACCCATGGTG+GGG 0.558838 8_1:+73689501 None:intergenic
AAGAGTTCAAGGCTCCAAGT+TGG 0.565418 8_1:+73688341 None:intergenic
TTTAGCACATTCTTGACCCA+TGG 0.565764 8_1:+73689496 None:intergenic
CTAACACCAAGGCGTCGGTA+AGG 0.567021 8_1:+73689709 None:intergenic
GAGGAGCGTAGAATCAATAG+AGG 0.575040 8_1:-73689617 Msa1213540:CDS
GCACATTCTTGACCCATGGT+GGG 0.578738 8_1:+73689500 None:intergenic
GAGCATGTTGTTGAACTCGC+CGG 0.584250 8_1:+73692364 None:intergenic
TGATGGCTAGTTTCGTACAA+AGG 0.587486 8_1:-73689576 Msa1213540:CDS
TGCAAAGATACATATCAAAG+AGG 0.593145 8_1:+73688103 None:intergenic
GCTAACAATAGTAGGCAACT+TGG 0.595501 8_1:+73688170 None:intergenic
GTGGTAGTTTGCAGTGCACA+CGG 0.596103 8_1:-73692500 Msa1213540:five_prime_UTR
TCGTTCGTTCTGCAAGAGGG+AGG 0.600087 8_1:+73692412 None:intergenic
TGTTGAACTCGCCGGACCAA+AGG 0.600611 8_1:+73692372 None:intergenic
AGTTGAGGAGTCCCCACCAT+GGG 0.606304 8_1:-73689512 Msa1213540:CDS
CCTCTTGCAGAACGAACGAA+AGG 0.609489 8_1:-73692408 Msa1213540:five_prime_UTR
CAAGTTGAAGAAGAAAGTTG+AGG 0.611137 8_1:-73689527 Msa1213540:CDS
CAAAGAGAAACAATCTTCTG+AGG 0.616936 8_1:+73689443 None:intergenic
CATGGCTAACACCAAGGCGT+CGG 0.618805 8_1:+73689704 None:intergenic
TGGCTAGTTTCGTACAAAGG+AGG 0.635562 8_1:-73689573 Msa1213540:CDS
AACAGTATGCTGGACATGAG+AGG 0.646098 8_1:-73689636 Msa1213540:CDS
GCTTCTGAAGAAGAAATTTG+GGG 0.649344 8_1:-73689679 Msa1213540:CDS
AAGCATCATGGCTAACACCA+AGG 0.688521 8_1:+73689698 None:intergenic
AAGTTGAGGAGTCCCCACCA+TGG 0.688946 8_1:-73689513 Msa1213540:CDS
TCTCAATTACAACAACAACA+TGG 0.695771 8_1:-73692297 Msa1213540:exon
CTTCTGAAGAAGAAATTTGG+GGG 0.702966 8_1:-73689678 Msa1213540:CDS
GCTGTAGACACACCATATGG+AGG 0.724697 8_1:-73692049 Msa1213540:intron
GATCCCAAACACTAACTCTG+GGG 0.736381 8_1:+73689731 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATTAATTAATTAATA+TGG + chr8_1:73688318-73688337 None:intergenic 0.0%
!!! AATTAATTAATTAATGCTTT+TGG - chr8_1:73688326-73688345 Msa1213540:CDS 10.0%
!!! TATCTATATTATTTAGTTTT+GGG - chr8_1:73688519-73688538 Msa1213540:intron 10.0%
!! ATAAATTTATTTATTCCATA+AGG + chr8_1:73690674-73690693 None:intergenic 10.0%
!! CAAAACTAAATAATATAGAT+AGG + chr8_1:73688520-73688539 None:intergenic 15.0%
!!! CTATCTATATTATTTAGTTT+TGG - chr8_1:73688518-73688537 Msa1213540:intron 15.0%
!!! ATCTATATTATTTAGTTTTG+GGG - chr8_1:73688520-73688539 Msa1213540:CDS 15.0%
!!! TATTCTAATTTTTCAACTTT+TGG - chr8_1:73688891-73688910 Msa1213540:intron 15.0%
!!! ATTCTAATTTTTCAACTTTT+GGG - chr8_1:73688892-73688911 Msa1213540:intron 15.0%
!! TAAAAATAACGATAAATTCT+AGG + chr8_1:73690017-73690036 None:intergenic 15.0%
!! ACATTATTGAAAAGATAATT+TGG - chr8_1:73691807-73691826 Msa1213540:intron 15.0%
!! AAATGGTTAACAAAAATTAA+AGG + chr8_1:73692012-73692031 None:intergenic 15.0%
!!! AAACTCAACATTTTTTTTTT+TGG - chr8_1:73692272-73692291 Msa1213540:CDS 15.0%
!! AATAAATGAATTAAGGAAGA+AGG + chr8_1:73688260-73688279 None:intergenic 20.0%
!!! TTAATTTGACAGAAGTTTAA+CGG + chr8_1:73688637-73688656 None:intergenic 20.0%
!!! AAAACCTTGAAGTATTTTTT+GGG - chr8_1:73688852-73688871 Msa1213540:intron 20.0%
!! TCATATAAAATAGAATCCAA+AGG + chr8_1:73689003-73689022 None:intergenic 20.0%
!! TGTAAATACGAAAATGAATT+GGG + chr8_1:73689051-73689070 None:intergenic 20.0%
!! TTGTAAATACGAAAATGAAT+TGG + chr8_1:73689052-73689071 None:intergenic 20.0%
!! ATTGTCTATTATAAAACTAG+AGG - chr8_1:73689324-73689343 Msa1213540:intron 20.0%
!! TTGTCTATTATAAAACTAGA+GGG - chr8_1:73689325-73689344 Msa1213540:intron 20.0%
!! TTATTGTTGTGAAAACTAAA+GGG + chr8_1:73689399-73689418 None:intergenic 20.0%
!! ATTATTGTTGTGAAAACTAA+AGG + chr8_1:73689400-73689419 None:intergenic 20.0%
!! TAAAATTCCACATATAAATG+CGG + chr8_1:73689761-73689780 None:intergenic 20.0%
!! CATGTATTATGAAATGTTTA+GGG + chr8_1:73690057-73690076 None:intergenic 20.0%
!!! AAATTGCAATCCTAATTTTT+TGG + chr8_1:73690285-73690304 None:intergenic 20.0%
!! AATTTATTTATTCCATAAGG+TGG + chr8_1:73690671-73690690 None:intergenic 20.0%
!!! TGCTTTTGAAAAAATATTGA+TGG - chr8_1:73690878-73690897 Msa1213540:intron 20.0%
!!! ATTTTTTTCTACAATTTTGG+AGG + chr8_1:73691251-73691270 None:intergenic 20.0%
!! TCCAAAATTGTAGAAAAAAA+TGG - chr8_1:73691250-73691269 Msa1213540:intron 20.0%
!!! ACCATTTTTTTCTACAATTT+TGG + chr8_1:73691254-73691273 None:intergenic 20.0%
!! ATATAGACTTGTATAAACAA+AGG + chr8_1:73691665-73691684 None:intergenic 20.0%
!! GTTAGAACAATTTAATCTTA+AGG - chr8_1:73691755-73691774 Msa1213540:intron 20.0%
! TGAAGCGAATAAATGAATTA+AGG + chr8_1:73688267-73688286 None:intergenic 25.0%
! TTAATGATTATACCTCCATA+TGG + chr8_1:73688437-73688456 None:intergenic 25.0%
! AATATAGATAGGTGAATATG+TGG + chr8_1:73688509-73688528 None:intergenic 25.0%
!! ATACATTTAGAATAACCTCA+GGG + chr8_1:73688562-73688581 None:intergenic 25.0%
! TGCTAATTAAGAAAATAGAG+GGG + chr8_1:73688592-73688611 None:intergenic 25.0%
! GTGCTAATTAAGAAAATAGA+GGG + chr8_1:73688593-73688612 None:intergenic 25.0%
! AGTGCTAATTAAGAAAATAG+AGG + chr8_1:73688594-73688613 None:intergenic 25.0%
! CAATGACAAAATTCAGAATT+AGG + chr8_1:73688682-73688701 None:intergenic 25.0%
!!! GAAAACCTTGAAGTATTTTT+TGG - chr8_1:73688851-73688870 Msa1213540:intron 25.0%
!!! ATTTTTTGGGAATCAATTGT+TGG - chr8_1:73688865-73688884 Msa1213540:intron 25.0%
!!! TTTTTTGGGAATCAATTGTT+GGG - chr8_1:73688866-73688885 Msa1213540:intron 25.0%
! AACCCAAATATGATCAAAAT+CGG + chr8_1:73688959-73688978 None:intergenic 25.0%
! AATGAATTGGGAATTGAAAT+TGG + chr8_1:73689039-73689058 None:intergenic 25.0%
!!! AGCAGTTTAGTTTTAACAAA+CGG - chr8_1:73689236-73689255 Msa1213540:intron 25.0%
!!! ATCTATTTTAAGAGACCTTA+AGG - chr8_1:73689295-73689314 Msa1213540:intron 25.0%
!!! TCTATTTTAAGAGACCTTAA+GGG - chr8_1:73689296-73689315 Msa1213540:intron 25.0%
! TGTCTATTATAAAACTAGAG+GGG - chr8_1:73689326-73689345 Msa1213540:intron 25.0%
!! TGTTATTTAAAGAGATCTCA+GGG - chr8_1:73689356-73689375 Msa1213540:intron 25.0%
!!! GAATTTTGTTTAAAATGCAC+CGG - chr8_1:73689483-73689502 Msa1213540:CDS 25.0%
! TTGTTGTAAGCAAATAGTAA+GGG - chr8_1:73689521-73689540 Msa1213540:CDS 25.0%
! AAAATTCCACATATAAATGC+GGG + chr8_1:73689760-73689779 None:intergenic 25.0%
! TAATCTATATTATACGCCAA+AGG + chr8_1:73689939-73689958 None:intergenic 25.0%
! GCATGTATTATGAAATGTTT+AGG + chr8_1:73690058-73690077 None:intergenic 25.0%
! TAGAAGCAACATCAATTATA+AGG - chr8_1:73690194-73690213 Msa1213540:intron 25.0%
! AACATCAATTATAAGGATAG+AGG - chr8_1:73690201-73690220 Msa1213540:intron 25.0%
! ACATCAATTATAAGGATAGA+GGG - chr8_1:73690202-73690221 Msa1213540:intron 25.0%
! TATAAAAGTTCCATACAACA+GGG - chr8_1:73690242-73690261 Msa1213540:intron 25.0%
!!! GTAGATCTGAAGTTTTTTAT+TGG + chr8_1:73690459-73690478 None:intergenic 25.0%
! CAAAAATCATCTTAAAGCTA+AGG + chr8_1:73690559-73690578 None:intergenic 25.0%
!!! CTTAGCTTTAAGATGATTTT+TGG - chr8_1:73690557-73690576 Msa1213540:intron 25.0%
! AATATTAATTTCTCAAACCG+TGG - chr8_1:73691293-73691312 Msa1213540:intron 25.0%
! ATATTAATTTCTCAAACCGT+GGG - chr8_1:73691294-73691313 Msa1213540:intron 25.0%
! AATGTTAAGTCATCTACAAA+GGG - chr8_1:73691342-73691361 Msa1213540:intron 25.0%
! CTATCTTTGGTTATCAATAA+AGG - chr8_1:73691462-73691481 Msa1213540:intron 25.0%
! AAAACTTTATCCAAAAAGAC+TGG + chr8_1:73691629-73691648 None:intergenic 25.0%
! AGGATATAATAGTGAATAGA+CGG + chr8_1:73691692-73691711 None:intergenic 25.0%
! ATTCACTATTATATCCTTCA+AGG - chr8_1:73691695-73691714 Msa1213540:intron 25.0%
!!! TGTCAATATGCAATTTTTTC+AGG + chr8_1:73691857-73691876 None:intergenic 25.0%
!! AACTCTTTGTCTTTTCATTT+AGG + chr8_1:73691932-73691951 None:intergenic 25.0%
! AAATGAAAAGACAAAGAGTT+TGG - chr8_1:73691932-73691951 Msa1213540:intron 25.0%
!!! GTTTACTTTTTCTTGTTCAT+TGG - chr8_1:73692166-73692185 Msa1213540:intron 25.0%
! TGTACTCTTAATGAGTTTAT+AGG - chr8_1:73692245-73692264 Msa1213540:CDS 25.0%
! GTGGTTCTTTGATTAAATTT+CGG - chr8_1:73692327-73692346 Msa1213540:five_prime_UTR 25.0%
! TTTGATATGTATCTTTGCAT+CGG - chr8_1:73692372-73692391 Msa1213540:five_prime_UTR 25.0%
!!! CAACTGATTTGTTCTAATTT+TGG - chr8_1:73692413-73692432 Msa1213540:five_prime_UTR 25.0%
!!! TTTGTTCTAATTTTGGTTCA+TGG - chr8_1:73692420-73692439 Msa1213540:five_prime_UTR 25.0%
ATGCTCTTCAATTAGTGATT+GGG - chr8_1:73688124-73688143 Msa1213540:three_prime_UTR 30.0%
TCTCAATTACAACAACAACA+TGG - chr8_1:73688174-73688193 Msa1213540:three_prime_UTR 30.0%
! TACATTTAGAATAACCTCAG+GGG + chr8_1:73688561-73688580 None:intergenic 30.0%
! GATACATTTAGAATAACCTC+AGG + chr8_1:73688563-73688582 None:intergenic 30.0%
GCTAATTAAGAAAATAGAGG+GGG + chr8_1:73688591-73688610 None:intergenic 30.0%
TGACAAAATTCAGAATTAGG+CGG + chr8_1:73688679-73688698 None:intergenic 30.0%
ATTGAATGGAGGAAATGAAA+AGG + chr8_1:73688705-73688724 None:intergenic 30.0%
! AACATCTCTTTTGTTCTAGT+TGG - chr8_1:73688772-73688791 Msa1213540:intron 30.0%
GATTCCCAAAAAATACTTCA+AGG + chr8_1:73688859-73688878 None:intergenic 30.0%
!! TTTTTGGGAATCAATTGTTG+GGG - chr8_1:73688867-73688886 Msa1213540:intron 30.0%
!!! TTGGGTTTGTTTTTGTTCAT+TGG - chr8_1:73688972-73688991 Msa1213540:intron 30.0%
ATCAGAAACATGAGAATAAG+AGG - chr8_1:73689189-73689208 Msa1213540:intron 30.0%
! AAGAGGTTTGTTTATTGAGA+AGG - chr8_1:73689206-73689225 Msa1213540:intron 30.0%
ATTAATTGTGTTAACCGAGA+AGG - chr8_1:73689263-73689282 Msa1213540:intron 30.0%
TTAATTGTGTTAACCGAGAA+GGG - chr8_1:73689264-73689283 Msa1213540:intron 30.0%
TAGATAAACAAATCCCTTCT+CGG + chr8_1:73689280-73689299 None:intergenic 30.0%
GTCTATTATAAAACTAGAGG+GGG - chr8_1:73689327-73689346 Msa1213540:intron 30.0%
!! GTGTTATTTAAAGAGATCTC+AGG - chr8_1:73689355-73689374 Msa1213540:intron 30.0%
GTTATTTAAAGAGATCTCAG+GGG - chr8_1:73689357-73689376 Msa1213540:intron 30.0%
ACAAAATGTCTTATCCCATT+AGG - chr8_1:73689421-73689440 Msa1213540:CDS 30.0%
TCAACGGAATAAAACCTAAT+GGG + chr8_1:73689438-73689457 None:intergenic 30.0%
TTCAACGGAATAAAACCTAA+TGG + chr8_1:73689439-73689458 None:intergenic 30.0%
! CTTGTTGTAAGCAAATAGTA+AGG - chr8_1:73689520-73689539 Msa1213540:CDS 30.0%
! CAAATAGTAAGGGTTTGTTT+GGG - chr8_1:73689531-73689550 Msa1213540:CDS 30.0%
TATTATACGCCAAAGGTTAA+GGG + chr8_1:73689932-73689951 None:intergenic 30.0%
ATATTATACGCCAAAGGTTA+AGG + chr8_1:73689933-73689952 None:intergenic 30.0%
TGGCGTATAATATAGATTAG+TGG - chr8_1:73689940-73689959 Msa1213540:intron 30.0%
!!! TATGCCTGTAGGTTATTTTT+TGG - chr8_1:73690104-73690123 Msa1213540:intron 30.0%
!!! ATGCCTGTAGGTTATTTTTT+GGG - chr8_1:73690105-73690124 Msa1213540:intron 30.0%
CTATAAAAGTTCCATACAAC+AGG - chr8_1:73690241-73690260 Msa1213540:intron 30.0%
!! TTTCAATCTCCGATTTTAGT+TGG - chr8_1:73690302-73690321 Msa1213540:intron 30.0%
!! GAACTTGATCTTTGATTTGA+TGG - chr8_1:73690350-73690369 Msa1213540:intron 30.0%
CAGCATTTATATTCCTTTCT+TGG - chr8_1:73690416-73690435 Msa1213540:intron 30.0%
AAAAGATTCTCAACCAAGAA+AGG + chr8_1:73690432-73690451 None:intergenic 30.0%
! ATGCTTCTGAAGAAGAAATT+TGG - chr8_1:73690790-73690809 Msa1213540:intron 30.0%
! TGCTTCTGAAGAAGAAATTT+GGG - chr8_1:73690791-73690810 Msa1213540:intron 30.0%
ATTATGAATTCTGCTGAAAC+TGG - chr8_1:73691071-73691090 Msa1213540:intron 30.0%
!! TTGGAGGAATAATTTTCAAG+TGG + chr8_1:73691235-73691254 None:intergenic 30.0%
AAAAATGGTATATGTTCGCT+TGG - chr8_1:73691265-73691284 Msa1213540:intron 30.0%
AGATGACTTAACATTCAGTA+TGG + chr8_1:73691337-73691356 None:intergenic 30.0%
GAATGTTAAGTCATCTACAA+AGG - chr8_1:73691341-73691360 Msa1213540:intron 30.0%
!! TCACTAAAGTCTTATTAGCA+AGG + chr8_1:73691439-73691458 None:intergenic 30.0%
TTATATCCTTCAAGGCATAA+TGG - chr8_1:73691703-73691722 Msa1213540:intron 30.0%
GTGCAGTAAAGGAAAATAAA+TGG + chr8_1:73692029-73692048 None:intergenic 30.0%
TTCCTTTACTGCACAATTAT+AGG - chr8_1:73692035-73692054 Msa1213540:intron 30.0%
AACCTATAATTGTGCAGTAA+AGG + chr8_1:73692040-73692059 None:intergenic 30.0%
TTACTGCACAATTATAGGTT+TGG - chr8_1:73692040-73692059 Msa1213540:intron 30.0%
AGCAACATTGTTGGAATATT+GGG + chr8_1:73692106-73692125 None:intergenic 30.0%
CAGTACATTGAATGAAACTA+TGG + chr8_1:73692227-73692246 None:intergenic 30.0%
TGCAAAGATACATATCAAAG+AGG + chr8_1:73692371-73692390 None:intergenic 30.0%
CATGCTCTTCAATTAGTGAT+TGG - chr8_1:73688123-73688142 Msa1213540:three_prime_UTR 35.0%
!!! GAAGAAGGAGTACAGTTTTT+TGG + chr8_1:73688245-73688264 None:intergenic 35.0%
! TTAATGCTTTTGGATTCTGC+AGG - chr8_1:73688336-73688355 Msa1213540:CDS 35.0%
ACTTAGTACGAAACGAAACT+TGG + chr8_1:73688400-73688419 None:intergenic 35.0%
TCTTCAAAACCATTGACGAA+CGG + chr8_1:73688827-73688846 None:intergenic 35.0%
!!! TCGCCGATTTTGATCATATT+TGG - chr8_1:73688953-73688972 Msa1213540:intron 35.0%
!!! CGCCGATTTTGATCATATTT+GGG - chr8_1:73688954-73688973 Msa1213540:intron 35.0%
AGAAAGAACAAAGACCTTGT+TGG - chr8_1:73689116-73689135 Msa1213540:intron 35.0%
TTTGAGCATTTATGCCAACA+AGG + chr8_1:73689133-73689152 None:intergenic 35.0%
TGTTGGCATAAATGCTCAAA+AGG - chr8_1:73689133-73689152 Msa1213540:intron 35.0%
!! ATTTTAAGAGACCTTAAGGG+AGG - chr8_1:73689299-73689318 Msa1213540:intron 35.0%
ATAGACAATAACCTCCCTTA+AGG + chr8_1:73689313-73689332 None:intergenic 35.0%
ACAAGTGCAAAACTAAAAGC+CGG + chr8_1:73689505-73689524 None:intergenic 35.0%
! GCAAATAGTAAGGGTTTGTT+TGG - chr8_1:73689530-73689549 Msa1213540:CDS 35.0%
! AAGGGTTTGTTTGGGAATTT+AGG - chr8_1:73689539-73689558 Msa1213540:CDS 35.0%
GTTTGTTTGGGAATTTAGGA+GGG - chr8_1:73689543-73689562 Msa1213540:CDS 35.0%
TTTGTTTGGGAATTTAGGAG+GGG - chr8_1:73689544-73689563 Msa1213540:CDS 35.0%
!!! TGCCTGTAGGTTATTTTTTG+GGG - chr8_1:73690106-73690125 Msa1213540:intron 35.0%
!!! TGTAGGTTATTTTTTGGGGA+GGG - chr8_1:73690110-73690129 Msa1213540:intron 35.0%
CAATTATAAGGATAGAGGGA+AGG - chr8_1:73690206-73690225 Msa1213540:intron 35.0%
!!! TGCAATCCTAATTTTTTGGC+TGG + chr8_1:73690281-73690300 None:intergenic 35.0%
! TTGATGGTCATAGTAATGAG+TGG - chr8_1:73690366-73690385 Msa1213540:intron 35.0%
!!! ACTAGTTTTATGTCCTCTTC+TGG - chr8_1:73690508-73690527 Msa1213540:intron 35.0%
! GTCTTCTATTTTCCACCTTA+TGG - chr8_1:73690656-73690675 Msa1213540:intron 35.0%
! ATACGTGCATCCTTTTATAC+AGG - chr8_1:73690702-73690721 Msa1213540:intron 35.0%
TGGGACATTACCTGTATAAA+AGG + chr8_1:73690715-73690734 None:intergenic 35.0%
!! TTTCTTCTTCAGAAGCATCA+TGG + chr8_1:73690788-73690807 None:intergenic 35.0%
! GCTTCTGAAGAAGAAATTTG+GGG - chr8_1:73690792-73690811 Msa1213540:intron 35.0%
! CTTCTGAAGAAGAAATTTGG+GGG - chr8_1:73690793-73690812 Msa1213540:intron 35.0%
! CAAGTTGAAGAAGAAAGTTG+AGG - chr8_1:73690944-73690963 Msa1213540:intron 35.0%
! CTTCTGAGGATAATTTCAGT+TGG + chr8_1:73691017-73691036 None:intergenic 35.0%
CAAAGAGAAACAATCTTCTG+AGG + chr8_1:73691031-73691050 None:intergenic 35.0%
! ATTGTTTCTCTTTGCCTTCA+TGG - chr8_1:73691037-73691056 Msa1213540:intron 35.0%
! TTGTTTCTCTTTGCCTTCAT+GGG - chr8_1:73691038-73691057 Msa1213540:intron 35.0%
TCAAATCAAACCTGAAAAGC+AGG + chr8_1:73691098-73691117 None:intergenic 35.0%
GGTGAATATTCTTTCTTCCT+AGG - chr8_1:73691363-73691382 Msa1213540:intron 35.0%
ATTCTTTCTTCCTAGGCTTT+AGG - chr8_1:73691370-73691389 Msa1213540:intron 35.0%
TGACAAATGACAAGTACATC+AGG + chr8_1:73691399-73691418 None:intergenic 35.0%
ACTTTAGTGACTGCTATCTT+TGG - chr8_1:73691449-73691468 Msa1213540:intron 35.0%
! TTCAAGTCTTCCAGTCTTTT+TGG - chr8_1:73691616-73691635 Msa1213540:intron 35.0%
AATATGCCATTATGCCTTGA+AGG + chr8_1:73691712-73691731 None:intergenic 35.0%
CAAGGCATAATGGCATATTA+AGG - chr8_1:73691713-73691732 Msa1213540:intron 35.0%
CATAATGGCATATTAAGGAC+AGG - chr8_1:73691718-73691737 Msa1213540:intron 35.0%
TCTTAAGGTTCACCTATTCT+TGG - chr8_1:73691770-73691789 Msa1213540:intron 35.0%
!!! ATGCAATTTTTTCAGGCACA+TGG + chr8_1:73691850-73691869 None:intergenic 35.0%
CAGCAACATTGTTGGAATAT+TGG + chr8_1:73692107-73692126 None:intergenic 35.0%
!!! TGTACCTTTTTCAAGTGAAG+TGG - chr8_1:73692190-73692209 Msa1213540:intron 35.0%
ACCACTATGCTAACAATAGT+AGG + chr8_1:73692312-73692331 None:intergenic 35.0%
!!! TTTTGGTTCATGGTGTGTTA+TGG - chr8_1:73692430-73692449 Msa1213540:five_prime_UTR 35.0%
!!! CAGTTTTTTGGAGAGGAAAG+CGG + chr8_1:73688233-73688252 None:intergenic 40.0%
!!! AGGAGTACAGTTTTTTGGAG+AGG + chr8_1:73688240-73688259 None:intergenic 40.0%
! ATTCCTTGTATTTTCCCGGA+GGG + chr8_1:73688363-73688382 None:intergenic 40.0%
! TGGGATTCCTTGTATTTTCC+CGG + chr8_1:73688367-73688386 None:intergenic 40.0%
! ATTTAGAATAACCTCAGGGG+AGG + chr8_1:73688558-73688577 None:intergenic 40.0%
! TAAGAAAATAGAGGGGGTGT+TGG + chr8_1:73688585-73688604 None:intergenic 40.0%
! CAGAAGTTTAACGGTGTCAA+GGG + chr8_1:73688628-73688647 None:intergenic 40.0%
! ACAGAAGTTTAACGGTGTCA+AGG + chr8_1:73688629-73688648 None:intergenic 40.0%
!! TAGGCGGTGTTATATGTTTC+AGG + chr8_1:73688663-73688682 None:intergenic 40.0%
CATTTCCTCCATTCAATGAG+CGG - chr8_1:73688708-73688727 Msa1213540:intron 40.0%
AACGACCCAAATGGAAAATG+TGG + chr8_1:73688734-73688753 None:intergenic 40.0%
!! TCTCTTTTGTTCTAGTTGGC+TGG - chr8_1:73688776-73688795 Msa1213540:intron 40.0%
!!! CGTCAATGGTTTTGAAGAAG+AGG - chr8_1:73688829-73688848 Msa1213540:intron 40.0%
ATTTAAAGAGATCTCAGGGG+AGG - chr8_1:73689360-73689379 Msa1213540:intron 40.0%
!!! GGTTTTATTCCGTTGAATCG+TGG - chr8_1:73689442-73689461 Msa1213540:CDS 40.0%
GATACACTTCCACGATTCAA+CGG + chr8_1:73689454-73689473 None:intergenic 40.0%
! GGTTTGTTTGGGAATTTAGG+AGG - chr8_1:73689542-73689561 Msa1213540:CDS 40.0%
AGGGGAGGGTTTAAAAACTA+GGG - chr8_1:73689562-73689581 Msa1213540:CDS 40.0%
GAGGGTTTAAAAACTAGGGA+AGG - chr8_1:73689566-73689585 Msa1213540:CDS 40.0%
GGTTTAAAAACTAGGGAAGG+AGG - chr8_1:73689569-73689588 Msa1213540:CDS 40.0%
TGCAATCCCGCATTTATATG+TGG - chr8_1:73689751-73689770 Msa1213540:intron 40.0%
AGCAATGATCCCTTAACCTT+TGG - chr8_1:73689920-73689939 Msa1213540:intron 40.0%
TACATGCTGAGAAGCAAACA+AGG - chr8_1:73690071-73690090 Msa1213540:intron 40.0%
GCTTTGATAAGTATGCCTGT+AGG - chr8_1:73690093-73690112 Msa1213540:intron 40.0%
CTCCCCAAAAAATAACCTAC+AGG + chr8_1:73690111-73690130 None:intergenic 40.0%
!!! CTGTAGGTTATTTTTTGGGG+AGG - chr8_1:73690109-73690128 Msa1213540:intron 40.0%
!!! GTAGGTTATTTTTTGGGGAG+GGG - chr8_1:73690111-73690130 Msa1213540:intron 40.0%
!!! TAGGTTATTTTTTGGGGAGG+GGG - chr8_1:73690112-73690131 Msa1213540:intron 40.0%
TCCTGACCAGCCAAAAAATT+AGG - chr8_1:73690272-73690291 Msa1213540:intron 40.0%
!!! TCCTAATTTTTTGGCTGGTC+AGG + chr8_1:73690276-73690295 None:intergenic 40.0%
! CAGTTGGCTCCAACTAAAAT+CGG + chr8_1:73690314-73690333 None:intergenic 40.0%
!! CACTAACTCTGGGGAATTTT+GGG + chr8_1:73690734-73690753 None:intergenic 40.0%
!! ACACTAACTCTGGGGAATTT+TGG + chr8_1:73690735-73690754 None:intergenic 40.0%
AATTCCCCAGAGTTAGTGTT+TGG - chr8_1:73690736-73690755 Msa1213540:intron 40.0%
ATTCCCCAGAGTTAGTGTTT+GGG - chr8_1:73690737-73690756 Msa1213540:intron 40.0%
TTTCTGTTGCAACAGTATGC+TGG - chr8_1:73690825-73690844 Msa1213540:intron 40.0%
!! TGATGGCTAGTTTCGTACAA+AGG - chr8_1:73690895-73690914 Msa1213540:intron 40.0%
TTTAGCACATTCTTGACCCA+TGG + chr8_1:73690978-73690997 None:intergenic 40.0%
CTGAGGATAATTTCAGTTGG+TGG + chr8_1:73691014-73691033 None:intergenic 40.0%
GAACAACTGTAATTCACCCA+CGG + chr8_1:73691313-73691332 None:intergenic 40.0%
TCTTGTGGCTATCAGACTTT+CGG - chr8_1:73691524-73691543 Msa1213540:intron 40.0%
TAAGGACAGGTGAATGTGTT+TGG - chr8_1:73691731-73691750 Msa1213540:intron 40.0%
CAGTACTATTCTCTTGCTAC+AGG - chr8_1:73691875-73691894 Msa1213540:intron 40.0%
TACTATTCTCTTGCTACAGG+TGG - chr8_1:73691878-73691897 Msa1213540:intron 40.0%
ATTGGGTGAGTGGTATAACT+TGG - chr8_1:73691969-73691988 Msa1213540:intron 40.0%
! TTATAGGTTTGGAGCTCTTG+TGG - chr8_1:73692051-73692070 Msa1213540:CDS 40.0%
CCAACGATGTTAAGAGTTCA+AGG + chr8_1:73692144-73692163 None:intergenic 40.0%
CCTTGAACTCTTAACATCGT+TGG - chr8_1:73692141-73692160 Msa1213540:intron 40.0%
! GTTGCCACTTCACTTGAAAA+AGG + chr8_1:73692197-73692216 None:intergenic 40.0%
GCTAACAATAGTAGGCAACT+TGG + chr8_1:73692304-73692323 None:intergenic 40.0%
GCCTACTATTGTTAGCATAG+TGG - chr8_1:73692308-73692327 Msa1213540:five_prime_UTR 40.0%
AATCTCAATCTGAGCGTGTT+TGG + chr8_1:73692494-73692513 None:intergenic 40.0%
CTTTCGTTCGTTCTGCAAGA+GGG + chr8_1:73688065-73688084 None:intergenic 45.0%
AGGAAAAGAACGCGTTCCTT+TGG - chr8_1:73688083-73688102 Msa1213540:three_prime_UTR 45.0%
!!! TTTTTTGGAGAGGAAAGCGG+TGG + chr8_1:73688230-73688249 None:intergenic 45.0%
! TTCCTTGTATTTTCCCGGAG+GGG + chr8_1:73688362-73688381 None:intergenic 45.0%
! GATTCCTTGTATTTTCCCGG+AGG + chr8_1:73688364-73688383 None:intergenic 45.0%
GAAACTTGGCGAAACGTTGT+GGG + chr8_1:73688386-73688405 None:intergenic 45.0%
AATTACATTCACCTCCCCTG+AGG - chr8_1:73688544-73688563 Msa1213540:CDS 45.0%
! TTTAACGGTGTCAAGGGCAA+GGG + chr8_1:73688622-73688641 None:intergenic 45.0%
AAATGTGGCCGCTCATTGAA+TGG + chr8_1:73688719-73688738 None:intergenic 45.0%
! AGCGGCCACATTTTCCATTT+GGG - chr8_1:73688726-73688745 Msa1213540:intron 45.0%
TTCCATTTGGGTCGTTTGCT+TGG - chr8_1:73688738-73688757 Msa1213540:intron 45.0%
TCCATTTGGGTCGTTTGCTT+GGG - chr8_1:73688739-73688758 Msa1213540:intron 45.0%
TCCAACTTGGCGATGACATT+TGG + chr8_1:73688932-73688951 None:intergenic 45.0%
CAAAATCGGCGATTCCAACT+TGG + chr8_1:73688945-73688964 None:intergenic 45.0%
!! TTGTTCATTGGTAGCGCCTT+TGG - chr8_1:73688984-73689003 Msa1213540:intron 45.0%
TTTGGGAATTTAGGAGGGGA+GGG - chr8_1:73689548-73689567 Msa1213540:CDS 45.0%
GAGGGGAGGGTTTAAAAACT+AGG - chr8_1:73689561-73689580 Msa1213540:CDS 45.0%
AGGAGGAAGCTGAAGGAATA+TGG - chr8_1:73689586-73689605 Msa1213540:CDS 45.0%
! GAGCTAGTGCTGTTAGATAG+TGG - chr8_1:73689659-73689678 Msa1213540:CDS 45.0%
! CTGTTAGATAGTGGTCATCG+TGG - chr8_1:73689668-73689687 Msa1213540:CDS 45.0%
CGCTTCACAAATTGCTATGG+CGG + chr8_1:73689705-73689724 None:intergenic 45.0%
TGGCGCTTCACAAATTGCTA+TGG + chr8_1:73689708-73689727 None:intergenic 45.0%
TATAGTGCCGCAATGGTAGA+TGG + chr8_1:73689728-73689747 None:intergenic 45.0%
ATCTACCATTGCGGCACTAT+AGG - chr8_1:73689727-73689746 Msa1213540:CDS 45.0%
!! TCTGGCAGTTTATGGTGGAT+TGG + chr8_1:73689785-73689804 None:intergenic 45.0%
AGCTTGAACTGATGTTGCAG+TGG + chr8_1:73689810-73689829 None:intergenic 45.0%
ACTGCAACATCAGTTCAAGC+TGG - chr8_1:73689809-73689828 Msa1213540:intron 45.0%
ATCCTGAAGGTGGAAAAGGA+GGG + chr8_1:73689898-73689917 None:intergenic 45.0%
CTACATCCTGAAGGTGGAAA+AGG + chr8_1:73689902-73689921 None:intergenic 45.0%
TCATTGCTACATCCTGAAGG+TGG + chr8_1:73689908-73689927 None:intergenic 45.0%
GGATCATTGCTACATCCTGA+AGG + chr8_1:73689911-73689930 None:intergenic 45.0%
TGAAATAGCCCAAGCTAAGC+AGG - chr8_1:73690151-73690170 Msa1213540:intron 45.0%
AATGACGTCCTGCTTAGCTT+GGG + chr8_1:73690162-73690181 None:intergenic 45.0%
AAATGACGTCCTGCTTAGCT+TGG + chr8_1:73690163-73690182 None:intergenic 45.0%
TCCTCTTCTGGTAACTAGCT+GGG - chr8_1:73690520-73690539 Msa1213540:intron 45.0%
GATCCCAAACACTAACTCTG+GGG + chr8_1:73690743-73690762 None:intergenic 45.0%
GGATCCCAAACACTAACTCT+GGG + chr8_1:73690744-73690763 None:intergenic 45.0%
AGGATCCCAAACACTAACTC+TGG + chr8_1:73690745-73690764 None:intergenic 45.0%
AAGCATCATGGCTAACACCA+AGG + chr8_1:73690776-73690795 None:intergenic 45.0%
AACAGTATGCTGGACATGAG+AGG - chr8_1:73690835-73690854 Msa1213540:intron 45.0%
! GAGGAGCGTAGAATCAATAG+AGG - chr8_1:73690854-73690873 Msa1213540:intron 45.0%
!! TGGCTAGTTTCGTACAAAGG+AGG - chr8_1:73690898-73690917 Msa1213540:intron 45.0%
TTTCTCTTTGCCTTCATGGG+TGG - chr8_1:73691041-73691060 Msa1213540:intron 45.0%
!! TGAAACTGGACCTGCTTTTC+AGG - chr8_1:73691085-73691104 Msa1213540:intron 45.0%
TTTCAGAATAGCCACTGAGC+TGG - chr8_1:73691496-73691515 Msa1213540:intron 45.0%
CTATTCTTGGAGTCACGTCA+GGG - chr8_1:73691783-73691802 Msa1213540:intron 45.0%
TATTCTTGGAGTCACGTCAG+GGG - chr8_1:73691784-73691803 Msa1213540:intron 45.0%
! TTGGCTAGAGCGTTCGTTAT+TGG - chr8_1:73691951-73691970 Msa1213540:intron 45.0%
! TGGCTAGAGCGTTCGTTATT+GGG - chr8_1:73691952-73691971 Msa1213540:intron 45.0%
AGAGTTCAAGGCTCCAAGTT+GGG + chr8_1:73692132-73692151 None:intergenic 45.0%
AAGAGTTCAAGGCTCCAAGT+TGG + chr8_1:73692133-73692152 None:intergenic 45.0%
!! ATAAAAAAATAAAGAAATAT+AGG - chr8_1:73691195-73691214 Msa1213540:intron 5.0%
! GTGGTAGTTTGCAGTGCACA+CGG - chr8_1:73687971-73687990 Msa1213540:three_prime_UTR 50.0%
CCTTTCGTTCGTTCTGCAAG+AGG + chr8_1:73688066-73688085 None:intergenic 50.0%
CCTCTTGCAGAACGAACGAA+AGG - chr8_1:73688063-73688082 Msa1213540:three_prime_UTR 50.0%
AAGAACGCGTTCCTTTGGTC+CGG - chr8_1:73688088-73688107 Msa1213540:three_prime_UTR 50.0%
GAGCATGTTGTTGAACTCGC+CGG + chr8_1:73688110-73688129 None:intergenic 50.0%
AGGAAAGCGGTGGCGAAATT+GGG + chr8_1:73688220-73688239 None:intergenic 50.0%
CGAAACTTGGCGAAACGTTG+TGG + chr8_1:73688387-73688406 None:intergenic 50.0%
TGCGCTGTAGACACACCATA+TGG - chr8_1:73688419-73688438 Msa1213540:intron 50.0%
GCTGTAGACACACCATATGG+AGG - chr8_1:73688422-73688441 Msa1213540:intron 50.0%
! GTTTAACGGTGTCAAGGGCA+AGG + chr8_1:73688623-73688642 None:intergenic 50.0%
! GAGCGGCCACATTTTCCATT+TGG - chr8_1:73688725-73688744 Msa1213540:intron 50.0%
ACCCAAGCAAACGACCCAAA+TGG + chr8_1:73688743-73688762 None:intergenic 50.0%
CATTGACGAACGGTCTCACT+TGG + chr8_1:73688817-73688836 None:intergenic 50.0%
CAAGTGAGACCGTTCGTCAA+TGG - chr8_1:73688815-73688834 Msa1213540:intron 50.0%
GCCAAATGTCATCGCCAAGT+TGG - chr8_1:73688928-73688947 Msa1213540:intron 50.0%
GTTTGGGAATTTAGGAGGGG+AGG - chr8_1:73689547-73689566 Msa1213540:CDS 50.0%
GATGTACTAGAGCCAAGCAC+AGG - chr8_1:73689631-73689650 Msa1213540:CDS 50.0%
CTAGCTCAACAACCTGTGCT+TGG + chr8_1:73689646-73689665 None:intergenic 50.0%
! TGAAGCGCCATCTACCATTG+CGG - chr8_1:73689718-73689737 Msa1213540:CDS 50.0%
TGCAACCTATAGTGCCGCAA+TGG + chr8_1:73689735-73689754 None:intergenic 50.0%
TGGTGTCTGGCAGTTTATGG+TGG + chr8_1:73689790-73689809 None:intergenic 50.0%
CAGTGGTGTCTGGCAGTTTA+TGG + chr8_1:73689793-73689812 None:intergenic 50.0%
ACTGATGTTGCAGTGGTGTC+TGG + chr8_1:73689803-73689822 None:intergenic 50.0%
TGAAGGTGGAAAAGGAGGGT+GGG + chr8_1:73689894-73689913 None:intergenic 50.0%
CATCCTGAAGGTGGAAAAGG+AGG + chr8_1:73689899-73689918 None:intergenic 50.0%
GCTAAGCAGGACGTCATTTC+AGG - chr8_1:73690164-73690183 Msa1213540:intron 50.0%
! AAGGATAGAGGGAAGGCATG+CGG - chr8_1:73690213-73690232 Msa1213540:intron 50.0%
CTCTTCGACAGAGTGACAGT+TGG + chr8_1:73690330-73690349 None:intergenic 50.0%
CAACTGTCACTCTGTCGAAG+AGG - chr8_1:73690328-73690347 Msa1213540:intron 50.0%
GTCCTCTTCTGGTAACTAGC+TGG - chr8_1:73690519-73690538 Msa1213540:intron 50.0%
ACCCAGCTAGTTACCAGAAG+AGG + chr8_1:73690524-73690543 None:intergenic 50.0%
TCTTCTGGTAACTAGCTGGG+TGG - chr8_1:73690523-73690542 Msa1213540:intron 50.0%
TGGTAACTAGCTGGGTGGTT+TGG - chr8_1:73690528-73690547 Msa1213540:intron 50.0%
CACATTCTTGACCCATGGTG+GGG + chr8_1:73690973-73690992 None:intergenic 50.0%
GCACATTCTTGACCCATGGT+GGG + chr8_1:73690974-73690993 None:intergenic 50.0%
AGCACATTCTTGACCCATGG+TGG + chr8_1:73690975-73690994 None:intergenic 50.0%
CATCAGGCATCCTAAAGCCT+AGG + chr8_1:73691383-73691402 None:intergenic 50.0%
ACAAGACATGACCAGCTCAG+TGG + chr8_1:73691510-73691529 None:intergenic 50.0%
ACTGAGCTGGTCATGTCTTG+TGG - chr8_1:73691509-73691528 Msa1213540:intron 50.0%
CCTGACGTGACTCCAAGAAT+AGG + chr8_1:73691785-73691804 None:intergenic 50.0%
CCTATTCTTGGAGTCACGTC+AGG - chr8_1:73691782-73691801 Msa1213540:intron 50.0%
GCTACAGGTGGCAATCTCTT+TGG - chr8_1:73691890-73691909 Msa1213540:intron 50.0%
AGCGTTCGTTATTGGGTGAG+TGG - chr8_1:73691959-73691978 Msa1213540:intron 50.0%
! ATGGGTCTCTGGTTCATTGC+TGG - chr8_1:73692078-73692097 Msa1213540:CDS 50.0%
TCGTTCGTTCTGCAAGAGGG+AGG + chr8_1:73688062-73688081 None:intergenic 55.0%
TGTTGAACTCGCCGGACCAA+AGG + chr8_1:73688102-73688121 None:intergenic 55.0%
GAGGAAAGCGGTGGCGAAAT+TGG + chr8_1:73688221-73688240 None:intergenic 55.0%
TGTGGCCGCTCATTGAATGG+AGG + chr8_1:73688716-73688735 None:intergenic 55.0%
CTAGGGAAGGAGGAAGCTGA+AGG - chr8_1:73689579-73689598 Msa1213540:CDS 55.0%
CTGAAGGTGGAAAAGGAGGG+TGG + chr8_1:73689895-73689914 None:intergenic 55.0%
! CACCCTCCTTTTCCACCTTC+AGG - chr8_1:73689893-73689912 Msa1213540:intron 55.0%
! AGGATAGAGGGAAGGCATGC+GGG - chr8_1:73690214-73690233 Msa1213540:intron 55.0%
! GGAGCACTCTCCCTGTTGTA+TGG + chr8_1:73690255-73690274 None:intergenic 55.0%
!! CTAACACCAAGGCGTCGGTA+AGG + chr8_1:73690765-73690784 None:intergenic 55.0%
CATGGCTAACACCAAGGCGT+CGG + chr8_1:73690770-73690789 None:intergenic 55.0%
AAGTTGAGGAGTCCCCACCA+TGG - chr8_1:73690958-73690977 Msa1213540:intron 55.0%
AGTTGAGGAGTCCCCACCAT+GGG - chr8_1:73690959-73690978 Msa1213540:intron 55.0%
TCTTTGCCTTCATGGGTGGC+TGG - chr8_1:73691045-73691064 Msa1213540:intron 55.0%
AATGCTCCAGCCACCCATGA+AGG + chr8_1:73691054-73691073 None:intergenic 55.0%
! AGGTTTGGAGCTCTTGTGGC+TGG - chr8_1:73692055-73692074 Msa1213540:CDS 55.0%
TTGGAGCTCTTGTGGCTGGA+TGG - chr8_1:73692059-73692078 Msa1213540:CDS 55.0%
TGGAGCTCTTGTGGCTGGAT+GGG - chr8_1:73692060-73692079 Msa1213540:CDS 55.0%
GTTGGGCGCAGCAACATTGT+TGG + chr8_1:73692115-73692134 None:intergenic 55.0%
CAATGTTGCTGCGCCCAACT+TGG - chr8_1:73692116-73692135 Msa1213540:CDS 55.0%
CACACGGCGCAGTGTAGCAT+TGG - chr8_1:73687987-73688006 Msa1213540:three_prime_UTR 60.0%
! ACGGCGCAGTGTAGCATTGG+AGG - chr8_1:73687990-73688009 Msa1213540:three_prime_UTR 60.0%
TTGGATTCTGCAGGCCCCTC+CGG - chr8_1:73688345-73688364 Msa1213540:CDS 60.0%
GGCCCCTCCGGGAAAATACA+AGG - chr8_1:73688357-73688376 Msa1213540:CDS 60.0%
! AACGGTGTCAAGGGCAAGGG+AGG + chr8_1:73688619-73688638 None:intergenic 60.0%
GGAAAAGGAGGGTGGGAGCA+AGG + chr8_1:73689887-73689906 None:intergenic 60.0%
! GGATAGAGGGAAGGCATGCG+GGG - chr8_1:73690215-73690234 Msa1213540:intron 60.0%
! GATAGAGGGAAGGCATGCGG+GGG - chr8_1:73690216-73690235 Msa1213540:intron 60.0%
TGGGATCCTTACCGACGCCT+TGG - chr8_1:73690756-73690775 Msa1213540:intron 60.0%
CTTGTGGCTGGATGGGTCTC+TGG - chr8_1:73692067-73692086 Msa1213540:CDS 60.0%
TGGATTCTGCAGGCCCCTCC+GGG - chr8_1:73688346-73688365 Msa1213540:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 73687958 73692535 73687958 ID=Msa1213540;Name=Msa1213540
chr8_1 mRNA 73687958 73692535 73687958 ID=Msa1213540-mRNA-1;Parent=Msa1213540;Name=Msa1213540-mRNA-1;_AED=0.08;_eAED=0.08;_QI=235|1|1|1|1|1|5|328|251
chr8_1 exon 73687958 73688436 73687958 ID=Msa1213540-mRNA-1:exon:25194;Parent=Msa1213540-mRNA-1
chr8_1 exon 73688520 73688596 73688520 ID=Msa1213540-mRNA-1:exon:25193;Parent=Msa1213540-mRNA-1
chr8_1 exon 73689387 73689769 73689387 ID=Msa1213540-mRNA-1:exon:25192;Parent=Msa1213540-mRNA-1
chr8_1 exon 73692050 73692135 73692050 ID=Msa1213540-mRNA-1:exon:25191;Parent=Msa1213540-mRNA-1
chr8_1 exon 73692242 73692535 73692242 ID=Msa1213540-mRNA-1:exon:25190;Parent=Msa1213540-mRNA-1
chr8_1 five_prime_UTR 73692301 73692535 73692301 ID=Msa1213540-mRNA-1:five_prime_utr;Parent=Msa1213540-mRNA-1
chr8_1 CDS 73692242 73692300 73692242 ID=Msa1213540-mRNA-1:cds;Parent=Msa1213540-mRNA-1
chr8_1 CDS 73692050 73692135 73692050 ID=Msa1213540-mRNA-1:cds;Parent=Msa1213540-mRNA-1
chr8_1 CDS 73689387 73689769 73689387 ID=Msa1213540-mRNA-1:cds;Parent=Msa1213540-mRNA-1
chr8_1 CDS 73688520 73688596 73688520 ID=Msa1213540-mRNA-1:cds;Parent=Msa1213540-mRNA-1
chr8_1 CDS 73688286 73688436 73688286 ID=Msa1213540-mRNA-1:cds;Parent=Msa1213540-mRNA-1
chr8_1 three_prime_UTR 73687958 73688285 73687958 ID=Msa1213540-mRNA-1:three_prime_utr;Parent=Msa1213540-mRNA-1
Gene Sequence

>Msa1213540

ATGGCTTCTCTTTCACTTTCATCTCCCAATTTCGCCACCGCTTTCCTCTCCAAAAAACTGCCCCTCCGGGAAAATACAAGGAATCCCACAACGTTTCGCCAAGTTTCGTTTCGTACTAAGTGCGCTGTAGACACACCATATGGAGGTAATGTCCCAAAATTCCCCAGAGTTAGTGTTTGGGATCCTTACCGACGCCTTGGTGTTAGCCATGATGCTTCTGAAGAAGAAATTTGGGGGTCAAGAAATTTTCTGTTGCAACAGTATGCTGGACATGAGAGGAGCGTAGAATCAATAGAGGCTGCTTTTGAAAAAATATTGATGGCTAGTTTCGTACAAAGGAGGAAAACAAAAATTAATTTGAAAAGCAAGTTGAAGAAGAAAGTTGAGGAGTCCCCACCATGGGTCAAGAATGTGCTAAACATTGTTGAATTTCCACCAACTGAAATTATCCTCAGAAGATTGTTTCTCTTTGCCTTCATGGGTGGCTGGAGCATTATGAATTCTGCTGAAACTGGACCTGCTTTTCAGGTGGCAATCTCTTTGGCTGCTTGCATATACTTCCTAAATGAAAAGACAAAGAGTTTGGCTAGAGCGTTCGTTATTGGGTTTGGAGCTCTTGTGGCTGGATGGGTCTCTGGTTCATTGCTGGTACCCAATATTCCAACAATGTTGCTGCGCCCAACTTGGAGCCTTGAACTCTTAACATCGTTGGTAGTTTACTTTTTCTTGTTCATTGGTTGTACCTTTTTCAAGTGA

Protein sequence

>Msa1213540

MASLSLSSPNFATAFLSKKLPLRENTRNPTTFRQVSFRTKCAVDTPYGGNVPKFPRVSVWDPYRRLGVSHDASEEEIWGSRNFLLQQYAGHERSVESIEAAFEKILMASFVQRRKTKINLKSKLKKKVEESPPWVKNVLNIVEFPPTEIILRRLFLFAFMGGWSIMNSAETGPAFQVAISLAACIYFLNEKTKSLARAFVIGFGALVAGWVSGSLLVPNIPTMLLRPTWSLELLTSLVVYFFLFIGCTFFK*