AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0705030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0705030 MtrunA17_Chr8g0383291 95.353 538 13 4 1 535 1 529 0.0 1053
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0705030 AT2G21860.1 64.062 512 158 5 20 527 22 511 0.0 687

Find 131 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAATTTGGATCATTAATT+TGG 0.084716 4_4:+77566289 None:intergenic
TATTGCAAATAACTAAATTT+TGG 0.087334 4_4:+77566184 None:intergenic
AATTCAGAGTGTTACCATTT+TGG 0.198620 4_4:-77569298 Msa0705030:five_prime_UTR
TTGGTATGAACCGGTGTTTC+AGG 0.206928 4_4:-77566694 Msa0705030:CDS
ATTCACACATTCATCCAATT+TGG 0.214697 4_4:+77566276 None:intergenic
CACTATTTCATATGAGTCTT+TGG 0.227130 4_4:+77567256 None:intergenic
GAAAAGCAAAAGGGTCATTT+TGG 0.227489 4_4:-77566713 Msa0705030:CDS
CTAGATTTGAAGAACAAATT+AGG 0.233092 4_4:-77567353 Msa0705030:CDS
GAAGTAAAGGGAAGCATATT+TGG 0.240241 4_4:-77567311 Msa0705030:CDS
CCCTCTCAACTCTGCTTCTT+GGG 0.260895 4_4:-77568990 Msa0705030:CDS
GCCCTCTCAACTCTGCTTCT+TGG 0.274661 4_4:-77568991 Msa0705030:CDS
GCATGGAGAAGAATAGTAAA+AGG 0.274747 4_4:+77569153 None:intergenic
AAGAATAGTAAAAGGGAAAA+AGG 0.282457 4_4:+77569161 None:intergenic
TTTGCAATAAGCTTGTTATC+AGG 0.304552 4_4:-77566170 Msa0705030:three_prime_UTR
TATTTCAGTGTATTAGATAA+TGG 0.312534 4_4:-77566594 Msa0705030:CDS
TCATGCATTGATCCTCCATT+AGG 0.313626 4_4:-77566345 Msa0705030:CDS
CAAACGAAGAGTCGGTTAAC+TGG 0.314699 4_4:-77567427 Msa0705030:CDS
TCCAAATTAATGATCCAAAT+TGG 0.322012 4_4:-77566290 Msa0705030:CDS
TTCGTCCTCTCTCTTTCATT+TGG 0.322166 4_4:+77566432 None:intergenic
TGGAGCTGGCGCGTTGTAGC+GGG 0.328165 4_4:-77566789 Msa0705030:CDS
GAGTTATTTCAAATGAGTTT+TGG 0.328583 4_4:-77566572 Msa0705030:CDS
GCTGCAGGGCAGTCTTATAC+TGG 0.330058 4_4:-77566486 Msa0705030:CDS
TACTAATCAATGCTTATATA+AGG 0.337300 4_4:-77567172 Msa0705030:CDS
TTCATACGAAAGTGCGAATC+TGG 0.340979 4_4:-77566973 Msa0705030:CDS
TTCTCCTCCTCCATACCATT+TGG 0.346423 4_4:+77566655 None:intergenic
CATGCATTGATCCTCCATTA+GGG 0.358125 4_4:-77566344 Msa0705030:CDS
TCAACCATTGGAGGCACATA+TGG 0.360449 4_4:+77566882 None:intergenic
TATGGAGGAGGAGAAAATAT+AGG 0.367865 4_4:-77566647 Msa0705030:CDS
TCATTTGGATATGCTCCATC+TGG 0.369299 4_4:+77566447 None:intergenic
GACGCAGTTCTGACGATATA+CGG 0.372251 4_4:-77567208 Msa0705030:CDS
GTTAAGAGAGGTAAGGTATA+TGG 0.378832 4_4:-77566624 Msa0705030:CDS
GATGATGGAGGAAAGCAATA+AGG 0.384790 4_4:+77569094 None:intergenic
GGAGGCACATATGGCTTAGT+AGG 0.394962 4_4:+77566891 None:intergenic
TGGGGTTTGTTCCACTATCA+TGG 0.398219 4_4:-77566519 Msa0705030:CDS
ATGGAGGAGGAGAAAATATA+GGG 0.404522 4_4:-77566646 Msa0705030:CDS
TGTAGCTAATGACCTTAGTT+GGG 0.414877 4_4:-77566538 Msa0705030:CDS
TAATTACATACTTGATCAAC+AGG 0.415438 4_4:+77567008 None:intergenic
TCAGGTACTTAATTGCTTGT+TGG 0.420248 4_4:-77567075 Msa0705030:CDS
TTCTATAGAGGAAAAGCAAA+AGG 0.423876 4_4:-77566723 Msa0705030:CDS
GTCTATGATGAATGTTGAAA+TGG 0.425350 4_4:-77566119 Msa0705030:three_prime_UTR
AATGGAATAAGAAACCAAAA+TGG 0.428123 4_4:+77569284 None:intergenic
ATTGCAGAAGATTTGTTTGT+TGG 0.430954 4_4:-77566831 Msa0705030:CDS
AATCGAATCATGTATATTCC+AGG 0.431762 4_4:-77566141 Msa0705030:three_prime_UTR
GTTGAAGAACTGCGGTCGTC+AGG 0.432171 4_4:-77567093 Msa0705030:CDS
GAGATTCACAATGAAGTAAA+GGG 0.435424 4_4:-77567323 Msa0705030:CDS
GAACCCTCTGGAGTCCCTAA+TGG 0.441951 4_4:+77566330 None:intergenic
CATGGAGAAGAATAGTAAAA+GGG 0.442617 4_4:+77569154 None:intergenic
ATGGAGCTGGCGCGTTGTAG+CGG 0.444125 4_4:-77566790 Msa0705030:CDS
ATGTAGCTAATGACCTTAGT+TGG 0.456001 4_4:-77566539 Msa0705030:CDS
CATGGAGCTGCTAAAGCTGC+AGG 0.462494 4_4:-77566501 Msa0705030:CDS
CAGCCTTCAGTAATTCTCTC+TGG 0.462625 4_4:+77567474 None:intergenic
CCTCCAATGGTTGAATTTCG+CGG 0.464187 4_4:-77566873 Msa0705030:CDS
CTTTAGCAGCTCCATGATAG+TGG 0.464240 4_4:+77566508 None:intergenic
TGAGATTCACAATGAAGTAA+AGG 0.466183 4_4:-77567324 Msa0705030:CDS
TGCCCGCGAAATTCAACCAT+TGG 0.472472 4_4:+77566870 None:intergenic
CTGTAACACGCAAAGCGAAA+AGG 0.472645 4_4:+77566947 None:intergenic
TTGCAATAAGCTTGTTATCA+GGG 0.481767 4_4:-77566169 Msa0705030:three_prime_UTR
CTCCAATGGTTGAATTTCGC+GGG 0.485968 4_4:-77566872 Msa0705030:CDS
CTGCAGGGCAGTCTTATACT+GGG 0.487163 4_4:-77566485 Msa0705030:CDS
GAATGAAAACTTGAACCCTC+TGG 0.494780 4_4:+77566318 None:intergenic
CATTTGAAGGCCAAATGGTA+TGG 0.506239 4_4:-77566665 Msa0705030:CDS
CCCAAGAAGCAGAGTTGAGA+GGG 0.506484 4_4:+77568990 None:intergenic
AGAGAGATTGAGAATGAGCA+TGG 0.506508 4_4:+77569136 None:intergenic
AGAAATGTGAAATCAAAGAG+TGG 0.510895 4_4:-77566392 Msa0705030:CDS
GCAGTACTTGTTAGTCCAGA+TGG 0.511090 4_4:-77566462 Msa0705030:CDS
CAGAAGATTTGTTTGTTGGT+TGG 0.512517 4_4:-77566827 Msa0705030:CDS
CAAGGGAATTGATCATATGC+TGG 0.512768 4_4:+77566759 None:intergenic
AGATTGAAATGGGTTGATGA+AGG 0.515244 4_4:-77567548 Msa0705030:CDS
CAATATCAGCTATTCTATAG+AGG 0.515759 4_4:-77566735 Msa0705030:CDS
TAGAGAGTTTGCAATGGAGC+TGG 0.516155 4_4:-77566803 Msa0705030:CDS
CAGAGAGAATTACTGAAGGC+TGG 0.524861 4_4:-77567473 Msa0705030:CDS
TGCAAACTGTAACCGAAGCA+TGG 0.534436 4_4:-77567235 Msa0705030:CDS
TCCACGGTTGTTGATGATGA+TGG 0.535345 4_4:+77569079 None:intergenic
AGTGGAACAAACCCCAACTA+AGG 0.536966 4_4:+77566526 None:intergenic
TTCAGTAATTCTCTCTGGAG+TGG 0.537115 4_4:+77567479 None:intergenic
AGAAAATATAGGGTTAAGAG+AGG 0.541135 4_4:-77566636 Msa0705030:CDS
GTGAGGATGGTGGCTATAGT+TGG 0.542421 4_4:-77569028 Msa0705030:CDS
TTTCGTATGAAGCGATGCAT+CGG 0.549436 4_4:+77566985 None:intergenic
TGGGAAGATGAAGTTGCAGT+TGG 0.559282 4_4:+77569248 None:intergenic
ATATAGGGTTAAGAGAGGTA+AGG 0.560870 4_4:-77566631 Msa0705030:CDS
TTCAACATTCATCATAGACC+TGG 0.562335 4_4:+77566123 None:intergenic
GATTGAAATGGGTTGATGAA+GGG 0.563961 4_4:-77567547 Msa0705030:CDS
GTAGCTAATGACCTTAGTTG+GGG 0.568269 4_4:-77566537 Msa0705030:CDS
GGATGAGCCTCCGGTGAGGA+TGG 0.570432 4_4:-77569041 Msa0705030:CDS
AAGATGAAGTTGCAGTTGGA+AGG 0.572125 4_4:+77569252 None:intergenic
TGCAGGGCAGTCTTATACTG+GGG 0.572559 4_4:-77566484 Msa0705030:CDS
ACTGCGTCGATCCCATGCTT+CGG 0.573705 4_4:+77567223 None:intergenic
TCTATAGAGGAAAAGCAAAA+GGG 0.577392 4_4:-77566722 Msa0705030:CDS
GTTGGAAGGACATCTTAGAA+TGG 0.578244 4_4:+77569266 None:intergenic
GGAGCTGGCGCGTTGTAGCG+GGG 0.580346 4_4:-77566788 Msa0705030:CDS
GAAATGTGAAATCAAAGAGT+GGG 0.580566 4_4:-77566391 Msa0705030:CDS
TGTGACGATGGATGAGCCTC+CGG 0.581185 4_4:-77569050 Msa0705030:CDS
ATGGTGGCTATAGTTGGCCA+TGG 0.581673 4_4:-77569022 Msa0705030:CDS
CGCTGTTACAAACGAAGAGT+CGG 0.585099 4_4:-77567435 Msa0705030:CDS
CCGCGAAATTCAACCATTGG+AGG 0.586866 4_4:+77566873 None:intergenic
GCAAACTGTAACCGAAGCAT+GGG 0.587392 4_4:-77567234 Msa0705030:CDS
ATGGAGCTGCTAAAGCTGCA+GGG 0.587852 4_4:-77566500 Msa0705030:CDS
AGGAAAGCAATAAGGAGTAG+TGG 0.591834 4_4:+77569102 None:intergenic
GAAAAGTAGGTTGCATAGCT+CGG 0.592376 4_4:-77569366 None:intergenic
GAGGCACATATGGCTTAGTA+GGG 0.597220 4_4:+77566892 None:intergenic
AAGGCCAAATGGTATGGAGG+AGG 0.599053 4_4:-77566659 Msa0705030:CDS
TAAGCCATATGTGCCTCCAA+TGG 0.599741 4_4:-77566886 Msa0705030:CDS
ACTATAGCCACCATCCTCAC+CGG 0.601762 4_4:+77569031 None:intergenic
TTGATCTCCCACGTTGACAA+TGG 0.605791 4_4:+77566074 None:intergenic
TCCCAAGAAGCAGAGTTGAG+AGG 0.610361 4_4:+77568989 None:intergenic
AACTGTATGTTGAAGAACTG+CGG 0.613073 4_4:-77567101 Msa0705030:CDS
TGAGAGGGCTGACAGCTCCA+TGG 0.617554 4_4:+77569005 None:intergenic
TGAGTTTGAAGCACATGTGT+GGG 0.620501 4_4:+77569229 None:intergenic
GATTTGAAGAACAAATTAGG+AGG 0.621101 4_4:-77567350 Msa0705030:CDS
CATCGTCACATCAGAGTCCA+CGG 0.621255 4_4:+77569063 None:intergenic
CCCTCTGGAGTCCCTAATGG+AGG 0.622618 4_4:+77566333 None:intergenic
GTTGGTTAGAGAGTTTGCAA+TGG 0.622715 4_4:-77566809 Msa0705030:CDS
CAATTTGACCATTGTCAACG+TGG 0.624072 4_4:-77566082 Msa0705030:three_prime_UTR
TTGACAATGGTCAAATTGAG+AGG 0.633237 4_4:+77566087 None:intergenic
TGAGCCTCCGGTGAGGATGG+TGG 0.634453 4_4:-77569038 Msa0705030:CDS
ATTAGATTGAATGCACTCGT+CGG 0.634851 4_4:+77567505 None:intergenic
TTGAAGGCCAAATGGTATGG+AGG 0.635847 4_4:-77566662 Msa0705030:CDS
TTGAGTTTGAAGCACATGTG+TGG 0.641740 4_4:+77569228 None:intergenic
AATTTGACCATTGTCAACGT+GGG 0.644321 4_4:-77566081 None:intergenic
CATATCCAAATGAAAGAGAG+AGG 0.645957 4_4:-77566437 Msa0705030:CDS
AGAATAGCTGATATTGACAA+GGG 0.651578 4_4:+77566742 None:intergenic
TCCATCATCATCAACAACCG+TGG 0.662563 4_4:-77569080 Msa0705030:CDS
CCTCCATTAGGGACTCCAGA+GGG 0.662863 4_4:-77566333 Msa0705030:CDS
TAGAATAGCTGATATTGACA+AGG 0.664980 4_4:+77566741 None:intergenic
CGTGGACTCTGATGTGACGA+TGG 0.665005 4_4:-77569062 Msa0705030:CDS
TCCTCCATTAGGGACTCCAG+AGG 0.675079 4_4:-77566334 Msa0705030:CDS
ATAGCTCGGTAAGCAGCGAG+TGG 0.680601 4_4:-77569352 Msa0705030:five_prime_UTR
CGATGGATGAGCCTCCGGTG+AGG 0.688939 4_4:-77569045 Msa0705030:CDS
ACTCCAGAGAGAATTACTGA+AGG 0.689331 4_4:-77567477 Msa0705030:CDS
ATAGCCACCATCCTCACCGG+AGG 0.702930 4_4:+77569034 None:intergenic
ACGGTTGTTGATGATGATGG+AGG 0.719236 4_4:+77569082 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATAAAAGAAATATGT+GGG + chr4_4:77567397-77567416 None:intergenic 10.0%
!! TTATATCCTTATATAAAAAC+AGG + chr4_4:77566542-77566561 None:intergenic 15.0%
!! ATTTCAATATAAAAATAGCT+TGG + chr4_4:77566598-77566617 None:intergenic 15.0%
!!! TTATTTTATTTATCCAAACA+GGG + chr4_4:77566671-77566690 None:intergenic 15.0%
!!! TTTATTTTATTTATCCAAAC+AGG + chr4_4:77566672-77566691 None:intergenic 15.0%
!!! GATCTTTTTTCTTTATTTAT+AGG - chr4_4:77567289-77567308 Msa0705030:CDS 15.0%
!! TTATGATATAGTAGTTAATT+AGG + chr4_4:77567350-77567369 None:intergenic 15.0%
!! GATTAAATAAAAGAAATATG+TGG + chr4_4:77567398-77567417 None:intergenic 15.0%
!!! ATTGCAAATAACTAAATTTT+GGG + chr4_4:77569258-77569277 None:intergenic 15.0%
!!! TATTGCAAATAACTAAATTT+TGG + chr4_4:77569259-77569278 None:intergenic 15.0%
!!! CTATAACCTGTTTTTATATA+AGG - chr4_4:77566533-77566552 Msa0705030:CDS 20.0%
!! ACAACTTATATGAAAACATT+TGG + chr4_4:77566697-77566716 None:intergenic 20.0%
!! TATAACTTTATTGAGTTTAC+GGG + chr4_4:77566856-77566875 None:intergenic 20.0%
!! GTATAACTTTATTGAGTTTA+CGG + chr4_4:77566857-77566876 None:intergenic 20.0%
!! ACTCAATAAAGTTATACATA+AGG - chr4_4:77566860-77566879 Msa0705030:CDS 20.0%
!! ATATAGTAGTTAATTAGGTT+GGG + chr4_4:77567345-77567364 None:intergenic 20.0%
!!! TTATTTCTTTCAAATTTGCT+TGG - chr4_4:77567451-77567470 Msa0705030:CDS 20.0%
!!! TTTGACTATTTTCTTACTTA+TGG - chr4_4:77567567-77567586 Msa0705030:intron 20.0%
!!! TTGACTATTTTCTTACTTAT+GGG - chr4_4:77567568-77567587 Msa0705030:intron 20.0%
!! AAGCATATTTGGAAAAATAT+TGG - chr4_4:77568140-77568159 Msa0705030:intron 20.0%
!! AGCATATTTGGAAAAATATT+GGG - chr4_4:77568141-77568160 Msa0705030:intron 20.0%
!! TACTAATCAATGCTTATATA+AGG - chr4_4:77568268-77568287 Msa0705030:intron 20.0%
!! TATTTCAGTGTATTAGATAA+TGG - chr4_4:77568846-77568865 Msa0705030:intron 20.0%
! AATGGAATAAGAAACCAAAA+TGG + chr4_4:77566159-77566178 None:intergenic 25.0%
! AAGAATAGTAAAAGGGAAAA+AGG + chr4_4:77566282-77566301 None:intergenic 25.0%
! ACATGAAACTCATTTGAATT+TGG + chr4_4:77566890-77566909 None:intergenic 25.0%
!! AAATTTATTGTAGTTTGTGG+TGG - chr4_4:77566971-77566990 Msa0705030:CDS 25.0%
! TTACATACTTTAGCAAATCA+TGG - chr4_4:77567066-77567085 Msa0705030:CDS 25.0%
! AGTTAATTCTCAAATCTTTG+AGG + chr4_4:77567181-77567200 None:intergenic 25.0%
! TCTACGTTAATAAACATCTT+TGG + chr4_4:77567267-77567286 None:intergenic 25.0%
! AAGATGTTTATTAACGTAGA+AGG - chr4_4:77567267-77567286 Msa0705030:CDS 25.0%
! GATATAGTAGTTAATTAGGT+TGG + chr4_4:77567346-77567365 None:intergenic 25.0%
!!! AATGATTTTACTGGCTAAAA+CGG + chr4_4:77567373-77567392 None:intergenic 25.0%
!!! TTTAAGTTCTAAAGTGCTAA+TGG - chr4_4:77567641-77567660 Msa0705030:intron 25.0%
!!! AACAAGTTGAAATTAGCTTT+TGG + chr4_4:77567704-77567723 None:intergenic 25.0%
! GTTGTAAAGCTATCATTTAA+AGG - chr4_4:77567721-77567740 Msa0705030:intron 25.0%
! TGATTAAAGGGAACATTAAA+TGG + chr4_4:77567865-77567884 None:intergenic 25.0%
! ATTTAATGTTCCCTTTAATC+AGG - chr4_4:77567864-77567883 Msa0705030:intron 25.0%
!! AATCTTTTTGCCTGATTAAA+GGG + chr4_4:77567877-77567896 None:intergenic 25.0%
! CTAGATTTGAAGAACAAATT+AGG - chr4_4:77568087-77568106 Msa0705030:intron 25.0%
! GCATATTTGGAAAAATATTG+GGG - chr4_4:77568142-77568161 Msa0705030:intron 25.0%
! TAATTACATACTTGATCAAC+AGG + chr4_4:77568435-77568454 None:intergenic 25.0%
! GAAAAATAATTGTCTTGAGT+TGG - chr4_4:77568515-77568534 Msa0705030:intron 25.0%
!! TTTCAGGTAAAAACATTTGA+AGG - chr4_4:77568762-77568781 Msa0705030:intron 25.0%
!!! GAGTTATTTCAAATGAGTTT+TGG - chr4_4:77568868-77568887 Msa0705030:intron 25.0%
! TCCAAATTAATGATCCAAAT+TGG - chr4_4:77569150-77569169 Msa0705030:CDS 25.0%
! TCCAATTTGGATCATTAATT+TGG + chr4_4:77569154-77569173 None:intergenic 25.0%
!! AATTCAGAGTGTTACCATTT+TGG - chr4_4:77566142-77566161 Msa0705030:three_prime_UTR 30.0%
CATGGAGAAGAATAGTAAAA+GGG + chr4_4:77566289-77566308 None:intergenic 30.0%
AGTAAGCTGAAAACAACTTA+TGG - chr4_4:77566754-77566773 Msa0705030:CDS 30.0%
AACATATGCATATAGTGAGA+TGG - chr4_4:77566947-77566966 Msa0705030:CDS 30.0%
ACATATGCATATAGTGAGAT+GGG - chr4_4:77566948-77566967 Msa0705030:CDS 30.0%
GGGAAATTTATTGTAGTTTG+TGG - chr4_4:77566968-77566987 Msa0705030:CDS 30.0%
GAAGGCAATAATATAATGTG+CGG - chr4_4:77567004-77567023 Msa0705030:CDS 30.0%
GCGGATATAACATTAAAATC+TGG - chr4_4:77567023-77567042 Msa0705030:CDS 30.0%
TTGGAATAGCATGATTCATA+AGG - chr4_4:77567095-77567114 Msa0705030:CDS 30.0%
! TATGTGGGTAATGATTTTAC+TGG + chr4_4:77567382-77567401 None:intergenic 30.0%
!! TGTCATAATAGTTTTGCTAG+AGG - chr4_4:77567538-77567557 Msa0705030:CDS 30.0%
!! GTCATAATAGTTTTGCTAGA+GGG - chr4_4:77567539-77567558 Msa0705030:CDS 30.0%
ATTGAGAAGCTTATCCAAAA+AGG - chr4_4:77567798-77567817 Msa0705030:intron 30.0%
TCCAAAAAGGTTCATACTAA+CGG - chr4_4:77567811-77567830 Msa0705030:intron 30.0%
! CAATCTTTTTGCCTGATTAA+AGG + chr4_4:77567878-77567897 None:intergenic 30.0%
ATCAGGCAAAAAGATTGAAA+TGG - chr4_4:77567881-77567900 Msa0705030:intron 30.0%
TCAGGCAAAAAGATTGAAAT+GGG - chr4_4:77567882-77567901 Msa0705030:intron 30.0%
GATTTGAAGAACAAATTAGG+AGG - chr4_4:77568090-77568109 Msa0705030:intron 30.0%
TGAGATTCACAATGAAGTAA+AGG - chr4_4:77568116-77568135 Msa0705030:intron 30.0%
GAGATTCACAATGAAGTAAA+GGG - chr4_4:77568117-77568136 Msa0705030:intron 30.0%
!!! GTCTTTGGTTTTATCTAACT+CGG + chr4_4:77568172-77568191 None:intergenic 30.0%
CACTATTTCATATGAGTCTT+TGG + chr4_4:77568187-77568206 None:intergenic 30.0%
!! AAGTTTTTCAATACTGGAAC+TGG + chr4_4:77568294-77568313 None:intergenic 30.0%
ATTGAAAAACTTGAGAGCAA+AGG - chr4_4:77568302-77568321 Msa0705030:intron 30.0%
TTGAAAAACTTGAGAGCAAA+GGG - chr4_4:77568303-77568322 Msa0705030:intron 30.0%
! TGAAGAGCTTTTCTACAATT+AGG + chr4_4:77568393-77568412 None:intergenic 30.0%
! ATTGCAGAAGATTTGTTTGT+TGG - chr4_4:77568609-77568628 Msa0705030:intron 30.0%
AGAATAGCTGATATTGACAA+GGG + chr4_4:77568701-77568720 None:intergenic 30.0%
TAGAATAGCTGATATTGACA+AGG + chr4_4:77568702-77568721 None:intergenic 30.0%
CAATATCAGCTATTCTATAG+AGG - chr4_4:77568705-77568724 Msa0705030:intron 30.0%
TTCTATAGAGGAAAAGCAAA+AGG - chr4_4:77568717-77568736 Msa0705030:intron 30.0%
TCTATAGAGGAAAAGCAAAA+GGG - chr4_4:77568718-77568737 Msa0705030:intron 30.0%
!! AATGTTTTTACCTGAAACAC+CGG + chr4_4:77568759-77568778 None:intergenic 30.0%
AAAAACATTTGAAGGCCAAA+TGG - chr4_4:77568770-77568789 Msa0705030:intron 30.0%
AGAAAATATAGGGTTAAGAG+AGG - chr4_4:77568804-77568823 Msa0705030:intron 30.0%
!!! AAATGAGTTTTGGACAATTG+TGG - chr4_4:77568878-77568897 Msa0705030:intron 30.0%
AGAAATGTGAAATCAAAGAG+TGG - chr4_4:77569048-77569067 Msa0705030:CDS 30.0%
GAAATGTGAAATCAAAGAGT+GGG - chr4_4:77569049-77569068 Msa0705030:CDS 30.0%
ATTCACACATTCATCCAATT+TGG + chr4_4:77569167-77569186 None:intergenic 30.0%
!! TTTGCAATAAGCTTGTTATC+AGG - chr4_4:77569270-77569289 Msa0705030:exon 30.0%
!! TTGCAATAAGCTTGTTATCA+GGG - chr4_4:77569271-77569290 Msa0705030:exon 30.0%
AATCGAATCATGTATATTCC+AGG - chr4_4:77569299-77569318 Msa0705030:five_prime_UTR 30.0%
GTCTATGATGAATGTTGAAA+TGG - chr4_4:77569321-77569340 Msa0705030:five_prime_UTR 30.0%
GCATGGAGAAGAATAGTAAA+AGG + chr4_4:77566290-77566309 None:intergenic 35.0%
! TTGAGTTTACGGGTATGTTT+TGG + chr4_4:77566846-77566865 None:intergenic 35.0%
!! GTAATCCAAGAGTGCTATTT+AGG - chr4_4:77566919-77566938 Msa0705030:CDS 35.0%
! TAGCAAATCATGGATTGTGT+TGG - chr4_4:77567076-77567095 Msa0705030:CDS 35.0%
CATGATTCATAAGGAAACAC+AGG - chr4_4:77567104-77567123 Msa0705030:CDS 35.0%
AAAATCCAAAGACATGTTGC+AGG + chr4_4:77567238-77567257 None:intergenic 35.0%
! TCCGTTAGTATGAACCTTTT+TGG + chr4_4:77567815-77567834 None:intergenic 35.0%
!! AGATTGAAATGGGTTGATGA+AGG - chr4_4:77567892-77567911 Msa0705030:intron 35.0%
!! GATTGAAATGGGTTGATGAA+GGG - chr4_4:77567893-77567912 Msa0705030:intron 35.0%
ATTAGATTGAATGCACTCGT+CGG + chr4_4:77567938-77567957 None:intergenic 35.0%
! GAAGTAAAGGGAAGCATATT+TGG - chr4_4:77568129-77568148 Msa0705030:intron 35.0%
!! GCTCTCAAGTTTTTCAATAC+TGG + chr4_4:77568300-77568319 None:intergenic 35.0%
AACTGTATGTTGAAGAACTG+CGG - chr4_4:77568339-77568358 Msa0705030:intron 35.0%
TCAGGTACTTAATTGCTTGT+TGG - chr4_4:77568365-77568384 Msa0705030:intron 35.0%
! CAGAAGATTTGTTTGTTGGT+TGG - chr4_4:77568613-77568632 Msa0705030:intron 35.0%
! GAAAAGCAAAAGGGTCATTT+TGG - chr4_4:77568727-77568746 Msa0705030:intron 35.0%
TATGGAGGAGGAGAAAATAT+AGG - chr4_4:77568793-77568812 Msa0705030:intron 35.0%
ATGGAGGAGGAGAAAATATA+GGG - chr4_4:77568794-77568813 Msa0705030:intron 35.0%
ATATAGGGTTAAGAGAGGTA+AGG - chr4_4:77568809-77568828 Msa0705030:intron 35.0%
GTTAAGAGAGGTAAGGTATA+TGG - chr4_4:77568816-77568835 Msa0705030:intron 35.0%
ATGTAGCTAATGACCTTAGT+TGG - chr4_4:77568901-77568920 Msa0705030:intron 35.0%
TGTAGCTAATGACCTTAGTT+GGG - chr4_4:77568902-77568921 Msa0705030:intron 35.0%
CATATCCAAATGAAAGAGAG+AGG - chr4_4:77569003-77569022 Msa0705030:CDS 35.0%
TTCAACATTCATCATAGACC+TGG + chr4_4:77569320-77569339 None:intergenic 35.0%
TTGACAATGGTCAAATTGAG+AGG + chr4_4:77569356-77569375 None:intergenic 35.0%
GTTGGAAGGACATCTTAGAA+TGG + chr4_4:77566177-77566196 None:intergenic 40.0%
AAGATGAAGTTGCAGTTGGA+AGG + chr4_4:77566191-77566210 None:intergenic 40.0%
! TGAGTTTGAAGCACATGTGT+GGG + chr4_4:77566214-77566233 None:intergenic 40.0%
! TTGAGTTTGAAGCACATGTG+TGG + chr4_4:77566215-77566234 None:intergenic 40.0%
AGAGAGATTGAGAATGAGCA+TGG + chr4_4:77566307-77566326 None:intergenic 40.0%
AGGAAAGCAATAAGGAGTAG+TGG + chr4_4:77566341-77566360 None:intergenic 40.0%
!! GATGATGGAGGAAAGCAATA+AGG + chr4_4:77566349-77566368 None:intergenic 40.0%
TCTATACTGTAGACCCTGTT+TGG - chr4_4:77566655-77566674 Msa0705030:CDS 40.0%
ACTCTCCTAAATAGCACTCT+TGG + chr4_4:77566927-77566946 None:intergenic 40.0%
! TTCAGTAATTCTCTCTGGAG+TGG + chr4_4:77567964-77567983 None:intergenic 40.0%
ACTCCAGAGAGAATTACTGA+AGG - chr4_4:77567963-77567982 Msa0705030:intron 40.0%
TTTCGTATGAAGCGATGCAT+CGG + chr4_4:77568458-77568477 None:intergenic 40.0%
! TTCATACGAAAGTGCGAATC+TGG - chr4_4:77568467-77568486 Msa0705030:intron 40.0%
GTTGGTTAGAGAGTTTGCAA+TGG - chr4_4:77568631-77568650 Msa0705030:intron 40.0%
CAAGGGAATTGATCATATGC+TGG + chr4_4:77568684-77568703 None:intergenic 40.0%
!! AGGGTCATTTTGGTATGAAC+CGG - chr4_4:77568737-77568756 Msa0705030:intron 40.0%
CATTTGAAGGCCAAATGGTA+TGG - chr4_4:77568775-77568794 Msa0705030:intron 40.0%
GTAGCTAATGACCTTAGTTG+GGG - chr4_4:77568903-77568922 Msa0705030:intron 40.0%
TCATTTGGATATGCTCCATC+TGG + chr4_4:77568996-77569015 None:intergenic 40.0%
TTCGTCCTCTCTCTTTCATT+TGG + chr4_4:77569011-77569030 None:intergenic 40.0%
! TCATGCATTGATCCTCCATT+AGG - chr4_4:77569095-77569114 Msa0705030:CDS 40.0%
! CATGCATTGATCCTCCATTA+GGG - chr4_4:77569096-77569115 Msa0705030:CDS 40.0%
GAATGAAAACTTGAACCCTC+TGG + chr4_4:77569125-77569144 None:intergenic 40.0%
TGGGAAGATGAAGTTGCAGT+TGG + chr4_4:77566195-77566214 None:intergenic 45.0%
!! ACGGTTGTTGATGATGATGG+AGG + chr4_4:77566361-77566380 None:intergenic 45.0%
TCCATCATCATCAACAACCG+TGG - chr4_4:77566360-77566379 Msa0705030:CDS 45.0%
!! TCCACGGTTGTTGATGATGA+TGG + chr4_4:77566364-77566383 None:intergenic 45.0%
! TGTGGTGGAGAAGAAAGAGA+AGG - chr4_4:77566986-77567005 Msa0705030:CDS 45.0%
TGCAACCTGCAACATGTCTT+TGG - chr4_4:77567230-77567249 Msa0705030:CDS 45.0%
! AATTTGCTTGGACAGCATGC+AGG - chr4_4:77567463-77567482 Msa0705030:CDS 45.0%
CAGCCTTCAGTAATTCTCTC+TGG + chr4_4:77567969-77567988 None:intergenic 45.0%
CAGAGAGAATTACTGAAGGC+TGG - chr4_4:77567967-77567986 Msa0705030:intron 45.0%
CGCTGTTACAAACGAAGAGT+CGG - chr4_4:77568005-77568024 Msa0705030:intron 45.0%
CAAACGAAGAGTCGGTTAAC+TGG - chr4_4:77568013-77568032 Msa0705030:intron 45.0%
TGCAAACTGTAACCGAAGCA+TGG - chr4_4:77568205-77568224 Msa0705030:intron 45.0%
GCAAACTGTAACCGAAGCAT+GGG - chr4_4:77568206-77568225 Msa0705030:intron 45.0%
! GACGCAGTTCTGACGATATA+CGG - chr4_4:77568232-77568251 Msa0705030:intron 45.0%
CTGTAACACGCAAAGCGAAA+AGG + chr4_4:77568496-77568515 None:intergenic 45.0%
GAGGCACATATGGCTTAGTA+GGG + chr4_4:77568551-77568570 None:intergenic 45.0%
TAAGCCATATGTGCCTCCAA+TGG - chr4_4:77568554-77568573 Msa0705030:intron 45.0%
! TCAACCATTGGAGGCACATA+TGG + chr4_4:77568561-77568580 None:intergenic 45.0%
CCTCCAATGGTTGAATTTCG+CGG - chr4_4:77568567-77568586 Msa0705030:intron 45.0%
CTCCAATGGTTGAATTTCGC+GGG - chr4_4:77568568-77568587 Msa0705030:intron 45.0%
TAGAGAGTTTGCAATGGAGC+TGG - chr4_4:77568637-77568656 Msa0705030:intron 45.0%
TTGGTATGAACCGGTGTTTC+AGG - chr4_4:77568746-77568765 Msa0705030:intron 45.0%
TTGAAGGCCAAATGGTATGG+AGG - chr4_4:77568778-77568797 Msa0705030:intron 45.0%
TTCTCCTCCTCCATACCATT+TGG + chr4_4:77568788-77568807 None:intergenic 45.0%
AGTGGAACAAACCCCAACTA+AGG + chr4_4:77568917-77568936 None:intergenic 45.0%
! TGGGGTTTGTTCCACTATCA+TGG - chr4_4:77568921-77568940 Msa0705030:intron 45.0%
CTTTAGCAGCTCCATGATAG+TGG + chr4_4:77568935-77568954 None:intergenic 45.0%
! GCAGTACTTGTTAGTCCAGA+TGG - chr4_4:77568978-77568997 Msa0705030:CDS 45.0%
CATCGTCACATCAGAGTCCA+CGG + chr4_4:77566380-77566399 None:intergenic 50.0%
ACTATAGCCACCATCCTCAC+CGG + chr4_4:77566412-77566431 None:intergenic 50.0%
! GTGAGGATGGTGGCTATAGT+TGG - chr4_4:77566412-77566431 Msa0705030:CDS 50.0%
ATGGTGGCTATAGTTGGCCA+TGG - chr4_4:77566418-77566437 Msa0705030:CDS 50.0%
CCCAAGAAGCAGAGTTGAGA+GGG + chr4_4:77566453-77566472 None:intergenic 50.0%
CCCTCTCAACTCTGCTTCTT+GGG - chr4_4:77566450-77566469 Msa0705030:CDS 50.0%
TCCCAAGAAGCAGAGTTGAG+AGG + chr4_4:77566454-77566473 None:intergenic 50.0%
! GGAGGCACATATGGCTTAGT+AGG + chr4_4:77568552-77568571 None:intergenic 50.0%
CCGCGAAATTCAACCATTGG+AGG + chr4_4:77568570-77568589 None:intergenic 50.0%
TGCCCGCGAAATTCAACCAT+TGG + chr4_4:77568573-77568592 None:intergenic 50.0%
AAGGCCAAATGGTATGGAGG+AGG - chr4_4:77568781-77568800 Msa0705030:intron 50.0%
ATGGAGCTGCTAAAGCTGCA+GGG - chr4_4:77568940-77568959 Msa0705030:intron 50.0%
! CTGCAGGGCAGTCTTATACT+GGG - chr4_4:77568955-77568974 Msa0705030:intron 50.0%
! TGCAGGGCAGTCTTATACTG+GGG - chr4_4:77568956-77568975 Msa0705030:intron 50.0%
ATAGCTCGGTAAGCAGCGAG+TGG - chr4_4:77566088-77566107 Msa0705030:three_prime_UTR 55.0%
CGTGGACTCTGATGTGACGA+TGG - chr4_4:77566378-77566397 Msa0705030:CDS 55.0%
TGTGACGATGGATGAGCCTC+CGG - chr4_4:77566390-77566409 Msa0705030:CDS 55.0%
GCCCTCTCAACTCTGCTTCT+TGG - chr4_4:77566449-77566468 Msa0705030:CDS 55.0%
! ACTGCGTCGATCCCATGCTT+CGG + chr4_4:77568220-77568239 None:intergenic 55.0%
GTTGAAGAACTGCGGTCGTC+AGG - chr4_4:77568347-77568366 Msa0705030:intron 55.0%
CATGGAGCTGCTAAAGCTGC+AGG - chr4_4:77568939-77568958 Msa0705030:intron 55.0%
! GCTGCAGGGCAGTCTTATAC+TGG - chr4_4:77568954-77568973 Msa0705030:intron 55.0%
TCCTCCATTAGGGACTCCAG+AGG - chr4_4:77569106-77569125 Msa0705030:CDS 55.0%
CCTCCATTAGGGACTCCAGA+GGG - chr4_4:77569107-77569126 Msa0705030:CDS 55.0%
!! GAACCCTCTGGAGTCCCTAA+TGG + chr4_4:77569113-77569132 None:intergenic 55.0%
ATAGCCACCATCCTCACCGG+AGG + chr4_4:77566409-77566428 None:intergenic 60.0%
TGAGAGGGCTGACAGCTCCA+TGG + chr4_4:77566438-77566457 None:intergenic 60.0%
ATGGAGCTGGCGCGTTGTAG+CGG - chr4_4:77568650-77568669 Msa0705030:intron 60.0%
!! CCCTCTGGAGTCCCTAATGG+AGG + chr4_4:77569110-77569129 None:intergenic 60.0%
CGATGGATGAGCCTCCGGTG+AGG - chr4_4:77566395-77566414 Msa0705030:CDS 65.0%
GGATGAGCCTCCGGTGAGGA+TGG - chr4_4:77566399-77566418 Msa0705030:CDS 65.0%
TGAGCCTCCGGTGAGGATGG+TGG - chr4_4:77566402-77566421 Msa0705030:CDS 65.0%
TGGAGCTGGCGCGTTGTAGC+GGG - chr4_4:77568651-77568670 Msa0705030:intron 65.0%
GGAGCTGGCGCGTTGTAGCG+GGG - chr4_4:77568652-77568671 Msa0705030:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 77566082 77569380 77566082 ID=Msa0705030;Name=Msa0705030
chr4_4 mRNA 77566082 77569380 77566082 ID=Msa0705030-mRNA-1;Parent=Msa0705030;Name=Msa0705030-mRNA-1;_AED=0.00;_eAED=0.00;_QI=102|1|1|1|1|1|2|196|535
chr4_4 exon 77566082 77567576 77566082 ID=Msa0705030-mRNA-1:exon:24623;Parent=Msa0705030-mRNA-1
chr4_4 exon 77568970 77569380 77568970 ID=Msa0705030-mRNA-1:exon:24622;Parent=Msa0705030-mRNA-1
chr4_4 five_prime_UTR 77569279 77569380 77569279 ID=Msa0705030-mRNA-1:five_prime_utr;Parent=Msa0705030-mRNA-1
chr4_4 CDS 77568970 77569278 77568970 ID=Msa0705030-mRNA-1:cds;Parent=Msa0705030-mRNA-1
chr4_4 CDS 77566278 77567576 77566278 ID=Msa0705030-mRNA-1:cds;Parent=Msa0705030-mRNA-1
chr4_4 three_prime_UTR 77566082 77566277 77566082 ID=Msa0705030-mRNA-1:three_prime_utr;Parent=Msa0705030-mRNA-1
Gene Sequence

>Msa0705030

ATGTCCTTCCAACTGCAACTTCATCTTCCCACACATGTGCTTCAAACTCAAACAAATAATCGTTTCTATGCTCAACACTACTTTCTCTCTTCTAACCTTTTTCCCTTTTACTATTCTTCTCCATGCTCATTCTCAATCTCTCTTTCTTCACACACCACTACTCCTTATTGCTTTCCTCCATCATCATCAACAACCGTGGACTCTGATGTGACGATGGATGAGCCTCCGGTGAGGATGGTGGCTATAGTTGGCCATGGAGCTGTCAGCCCTCTCAACTCTGCTTCTTGGGAACAAGTCATGCTTCATACTGCAAAAAGATTGAAATGGGTTGATGAAGGGTATGAACTTCTTGTATTTACCGACGAGTGCATTCAATCTAATGAACCACTCCAGAGAGAATTACTGAAGGCTGGTATATTAGTGATTGTCGCTGTTACAAACGAAGAGTCGGTTAACTGGATTAAAATCAGCAGCAAAACTATTGAAAATGTAATATGCTTTGACTCTTCACTAGATTTGAAGAACAAATTAGGAGGCTATGAGATTCACAATGAAGTAAAGGGAAGCATATTTGGAAAAATATTGGGGAGTTCCGAGTTAGATAAAACCAAAGACTCATATGAAATAGTGCAAACTGTAACCGAAGCATGGGATCGACGCAGTTCTGACGATATACGGTTCTGTTTGCTGTTACTAATCAATGCTTATATAAGGCCAGTTCCAGTATTGAAAAACTTGAGAGCAAAGGGTTTTTCAACTTTAAACTGTATGTTGAAGAACTGCGGTCGTCAGGTACTTAATTGCTTGTTGGATCCTAATTGTAGAAAAGCTCTTCAATGTCTGAATAAGTGTAGTCCTGTTGATCAAGTATGTAATTACCGATGCATCGCTTCATACGAAAGTGCGAATCTGGAAGCCTTTTCGCTTTGCGTGTTACAGAAAAATAATTGTCTTGAGTTGGAAGCAGAAGTCCCTACTAAGCCATATGTGCCTCCAATGGTTGAATTTCGCGGGCAGAACTTGAGTCATGAAATTGCAGAAGATTTGTTTGTTGGTTGGTTAGAGAGTTTGCAATGGAGCTGGCGCGTTGTAGCGGGGCAGAATCCAGCATATGATCAATTCCCTTGTCAATATCAGCTATTCTATAGAGGAAAAGCAAAAGGGTCATTTTGGTATGAACCGGTGTTTCAGGTAAAAACATTTGAAGGCCAAATGGTATGGAGGAGGAGAAAATATAGGGTTAAGAGAGGTAAGGTATATGGCACATTCTATTTCAGTGTATTAGATAATGGAGTTATTTCAAATGAGTTTTGGACAATTGTGGATGTAGCTAATGACCTTAGTTGGGGTTTGTTCCACTATCATGGAGCTGCTAAAGCTGCAGGGCAGTCTTATACTGGGGCAGTACTTGTTAGTCCAGATGGAGCATATCCAAATGAAAGAGAGAGGACGAAAATTGTTGCTGCACTAGAGAAATGTGAAATCAAAGAGTGGGAGCTTTTCTTTGTTGACAATTGTTCATGCATTGATCCTCCATTAGGGACTCCAGAGGGTTCAAGTTTTCATTCTGTAGTCCAAATTAATGATCCAAATTGGATGAATGTGTGA

Protein sequence

>Msa0705030

MSFQLQLHLPTHVLQTQTNNRFYAQHYFLSSNLFPFYYSSPCSFSISLSSHTTTPYCFPPSSSTTVDSDVTMDEPPVRMVAIVGHGAVSPLNSASWEQVMLHTAKRLKWVDEGYELLVFTDECIQSNEPLQRELLKAGILVIVAVTNEESVNWIKISSKTIENVICFDSSLDLKNKLGGYEIHNEVKGSIFGKILGSSELDKTKDSYEIVQTVTEAWDRRSSDDIRFCLLLLINAYIRPVPVLKNLRAKGFSTLNCMLKNCGRQVLNCLLDPNCRKALQCLNKCSPVDQVCNYRCIASYESANLEAFSLCVLQKNNCLELEAEVPTKPYVPPMVEFRGQNLSHEIAEDLFVGWLESLQWSWRVVAGQNPAYDQFPCQYQLFYRGKAKGSFWYEPVFQVKTFEGQMVWRRRKYRVKRGKVYGTFYFSVLDNGVISNEFWTIVDVANDLSWGLFHYHGAAKAAGQSYTGAVLVSPDGAYPNERERTKIVAALEKCEIKEWELFFVDNCSCIDPPLGTPEGSSFHSVVQINDPNWMNV*