AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1111670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1111670 MtrunA17_Chr7g0245041 97.352 491 12 1 1 490 1 491 0.0 982
Msa1111670 MtrunA17_Chr8g0334531 72.962 503 120 8 1 490 13 512 0.0 663
Msa1111670 MtrunA17_Chr5g0422461 39.848 394 195 10 86 471 106 465 5.09e-88 280
Msa1111670 MtrunA17_Chr7g0245081 95.789 95 4 0 383 477 1 95 5.01e-49 166
Msa1111670 MtrunA17_Chr7g0245091 87.234 47 6 0 284 330 1 47 6.49e-22 89.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1111670 AT5G01920.1 66.867 498 151 7 1 488 1 494 0.0 616
Msa1111670 AT5G01920.2 66.867 498 151 7 1 488 1 494 0.0 616
Msa1111670 AT1G68830.1 39.646 396 197 10 96 482 101 463 7.70e-83 267

Find 100 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCTGCTGCTTCTGCTTTA+AGG 0.151964 7_3:+57414029 Msa1111670:CDS
CAGATTAAAGTCATTGATTT+TGG 0.192635 7_3:+57412939 Msa1111670:CDS
CATAATTCTTTCCTATTCTA+AGG 0.205369 7_3:-57412974 None:intergenic
AGGAACTTGGCACATGTTTC+AGG 0.208561 7_3:-57412133 None:intergenic
TCTTCTTTCGGAACTTCTTT+TGG 0.226055 7_3:-57413999 None:intergenic
CAAATCCTTGATAGTGATTC+TGG 0.233558 7_3:+57413944 Msa1111670:CDS
GCAAGACCAGGTGTTCTTAT+TGG 0.255792 7_3:+57411405 Msa1111670:CDS
ATTGTTCAATAACAAGTCTT+TGG 0.264615 7_3:-57411280 None:intergenic
GGCTCCAATGCAATTTGTTT+TGG 0.279167 7_3:+57411449 Msa1111670:CDS
ATTGAAGGGGCTAAAGAATT+TGG 0.281260 7_3:+57412067 Msa1111670:CDS
TGCTATTGATGCATATCTTT+TGG 0.286774 7_3:+57411428 Msa1111670:CDS
GTTAAGAAAGAATTGTTAAA+TGG 0.291124 7_3:-57411198 None:intergenic
TTGTTCAATAACAAGTCTTT+GGG 0.292907 7_3:-57411279 None:intergenic
AATTCACAAAAGGTGGAAAA+TGG 0.296536 7_3:+57412188 Msa1111670:CDS
GGATAAAGTCATTCTTAAAA+AGG 0.305148 7_3:+57411635 Msa1111670:CDS
TGCTTTGAAGAATTTCAATT+TGG 0.305364 7_3:+57413856 Msa1111670:CDS
TGTTGTTTATTCTGCTGTTT+TGG 0.310233 7_3:+57411548 Msa1111670:CDS
AAGGTGGAAAATGGCTTGTT+TGG 0.317886 7_3:+57412197 Msa1111670:CDS
CAGAATCACTATCAAGGATT+TGG 0.317958 7_3:-57413943 None:intergenic
ACAGTTTACGGGCATGTTAT+AGG 0.318043 7_3:-57414222 None:intergenic
GGATCCAAAGGTGTATAATT+AGG 0.325357 7_3:-57412999 None:intergenic
CAAAGCAGCTTGAGACCTTA+AGG 0.325974 7_3:-57413840 None:intergenic
AATTTGGAAATGAGGACATA+TGG 0.340412 7_3:+57413872 Msa1111670:CDS
AGATAAACGCCTTCTTCTTT+CGG 0.343291 7_3:-57414011 None:intergenic
CAAAGACTATAACTTACATT+TGG 0.346136 7_3:-57414443 None:intergenic
AGCAAAGCTGCAATTGGTTC+TGG 0.351901 7_3:-57413077 None:intergenic
TCACCACCTAGAAGAAAATA+AGG 0.353507 7_3:-57414055 None:intergenic
GAGATAAATATACTTACATT+TGG 0.358088 7_3:-57414392 None:intergenic
AATAAGCTAGAAACAGTTTA+CGG 0.367083 7_3:-57414234 None:intergenic
TCTTAAGAGATGTAATGATT+TGG 0.373158 7_3:-57412848 None:intergenic
TGTAGCTGTTGTAGATAGTA+AGG 0.376206 7_3:-57411118 None:intergenic
TGTGCCTAATTATACACCTT+TGG 0.381947 7_3:+57412995 Msa1111670:CDS
TTCTTGATTGGTGGTAAGAT+AGG 0.387351 7_3:+57411510 Msa1111670:CDS
TAGAATGATTCTTGTTGAAA+AGG 0.391353 7_3:-57411227 None:intergenic
AGACTGCTTGAGAAAGCTTA+TGG 0.396283 7_3:+57414193 Msa1111670:three_prime_UTR
AAGAGGAGTGATTTCTTGAT+TGG 0.402107 7_3:+57411498 Msa1111670:CDS
TAAGTTGGATGCTAAATCTA+AGG 0.404865 7_3:+57411614 Msa1111670:CDS
CTTAAGAAAATTCACGATAC+TGG 0.413330 7_3:+57412864 Msa1111670:CDS
GCTCTCACCAATCTTGTGGC+AGG 0.413652 7_3:+57413097 Msa1111670:CDS
AGAATTTCAATTTGGAAATG+AGG 0.423421 7_3:+57413864 Msa1111670:CDS
TGTGGTAGAACATATAGTTC+AGG 0.425025 7_3:-57413035 None:intergenic
CAGGTGAAGGTTGGAATTGA+AGG 0.425995 7_3:+57412052 Msa1111670:intron
ATGATGCTTAAGAGTGGAAA+AGG 0.429785 7_3:+57411591 Msa1111670:CDS
AATAAAACCTGCCACAAGAT+TGG 0.430494 7_3:-57413104 None:intergenic
GGTGAGAGCAAAGCTGCAAT+TGG 0.448894 7_3:-57413083 None:intergenic
GAAACATGTGCCAAGTTCCT+TGG 0.452194 7_3:+57412136 Msa1111670:CDS
ACGATACTGGCATTGTTCAC+AGG 0.453178 7_3:+57412877 Msa1111670:CDS
AGTTCAGGAGGACAGTAATC+AGG 0.454008 7_3:-57413020 None:intergenic
ATGGATATGATTTGAACAAA+TGG 0.455978 7_3:+57413891 Msa1111670:CDS
AAGATAGGAGAAGGGTCATT+TGG 0.457236 7_3:+57411525 Msa1111670:CDS
CTTGATAGTGATTCTGGTAG+AGG 0.461595 7_3:+57413950 Msa1111670:CDS
TAGTGATTCTGGTAGAGGTT+GGG 0.467038 7_3:+57413955 Msa1111670:CDS
AAATGGCAATACCAACCTTA+AGG 0.473712 7_3:+57413825 Msa1111670:CDS
TACAAAACTTCCAAGGAACT+TGG 0.480257 7_3:-57412146 None:intergenic
ATAAGCTAGAAACAGTTTAC+GGG 0.480961 7_3:-57414233 None:intergenic
TAAGAGTGGAAAAGGTAAGT+TGG 0.483976 7_3:+57411599 Msa1111670:CDS
AGGAGTGATTTCTTGATTGG+TGG 0.486103 7_3:+57411501 Msa1111670:CDS
ACCAATTCACAATTCACAAA+AGG 0.486126 7_3:+57412178 Msa1111670:CDS
CTTTGCTCTCACCAATCTTG+TGG 0.487689 7_3:+57413093 Msa1111670:CDS
TTTATCAGACATGCAGAGGT+TGG 0.500221 7_3:+57411341 Msa1111670:CDS
TGGAAAATGCAGGTGAAGGT+TGG 0.503897 7_3:+57412043 Msa1111670:intron
ATGACAGATTCTAAGTTTGA+AGG 0.504582 7_3:-57412756 None:intergenic
GAAAGAATTGTTAAATGGAG+TGG 0.508408 7_3:-57411193 None:intergenic
GTTTATTTCAGTTTATCTAC+CGG 0.509302 7_3:+57414156 Msa1111670:three_prime_UTR
ATTGGTGGTAAGATAGGAGA+AGG 0.514578 7_3:+57411516 Msa1111670:CDS
CTGGAAGGAGAGATTTGAAG+AGG 0.517706 7_3:+57411481 Msa1111670:CDS
TATCAGCTACAAAACTTCCA+AGG 0.517815 7_3:-57412153 None:intergenic
CTATCCAAAACAAATTGCAT+TGG 0.523317 7_3:-57411453 None:intergenic
TGACAGATTCTAAGTTTGAA+GGG 0.525444 7_3:-57412755 None:intergenic
ATAGTGATTCTGGTAGAGGT+TGG 0.526824 7_3:+57413954 Msa1111670:CDS
ATGGCTTGTTTGGAAATTTG+AGG 0.527072 7_3:+57412207 Msa1111670:CDS
GGATGTAAAGCCTTCCAACT+TGG 0.528793 7_3:+57412899 Msa1111670:CDS
TTCGTAACAACCAAGTTGGA+AGG 0.529719 7_3:-57412909 None:intergenic
CGATACTGGCATTGTTCACA+GGG 0.533903 7_3:+57412878 Msa1111670:CDS
GCAGCAACAGACCTTAGAAT+AGG 0.534028 7_3:+57412963 Msa1111670:CDS
TAAGTTTCAGAGTGTGAGTG+AGG 0.537619 7_3:+57411317 Msa1111670:CDS
AAAGAAGTTCCGAAAGAAGA+AGG 0.538947 7_3:+57414002 Msa1111670:CDS
AATTCACAATTCACAAAAGG+TGG 0.543613 7_3:+57412181 Msa1111670:CDS
TCAACAAGAATCATTCTACA+AGG 0.551400 7_3:+57411232 Msa1111670:CDS
CTCTACCAGAATCACTATCA+AGG 0.552037 7_3:-57413949 None:intergenic
TGGAATTGTACTCTTGCAAA+TGG 0.555729 7_3:+57413808 Msa1111670:CDS
GCAGCTTGAGACCTTAAGGT+TGG 0.570427 7_3:-57413836 None:intergenic
TTATGAGTATGTTGAAGTGT+AGG 0.575012 7_3:-57411141 None:intergenic
GATATGATTTGAACAAATGG+AGG 0.576550 7_3:+57413894 Msa1111670:CDS
AGGTGAAGGTTGGAATTGAA+GGG 0.576855 7_3:+57412053 Msa1111670:intron
AGTCTCACACGTGTTTATGC+CGG 0.588479 7_3:-57414175 None:intergenic
GGAAGACTTTGTGTTTCTTG+TGG 0.591105 7_3:-57413053 None:intergenic
AGGATTTATCAGACATGCAG+AGG 0.603674 7_3:+57411337 Msa1111670:CDS
AATTTGGTGATTGTGAAGAG+TGG 0.607180 7_3:+57412083 Msa1111670:CDS
ATGTTTCGAAATGCGTTGCA+AGG 0.615252 7_3:+57412777 Msa1111670:CDS
AAAGCTGCAATTGGTTCTGG+AGG 0.616137 7_3:-57413074 None:intergenic
GGACAGTAATCAGGATCCAA+AGG 0.623204 7_3:-57413011 None:intergenic
AAAGAGATGATGCTTAAGAG+TGG 0.625247 7_3:+57411585 Msa1111670:CDS
TGTTCAATAACAAGTCTTTG+GGG 0.631808 7_3:-57411278 None:intergenic
ATAGCACCAATAAGAACACC+TGG 0.641228 7_3:-57411411 None:intergenic
TTGGTGGTAAGATAGGAGAA+GGG 0.647730 7_3:+57411517 Msa1111670:CDS
ATATGATTTGAACAAATGGA+GGG 0.648335 7_3:+57413895 Msa1111670:CDS
GGTGAAGGTTGGAATTGAAG+GGG 0.652761 7_3:+57412054 Msa1111670:intron
GGTAGAACATATAGTTCAGG+AGG 0.667620 7_3:-57413032 None:intergenic
TCATGTAATCAGCAAGAGTG+CGG 0.675765 7_3:-57412719 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATAATCATTTAATAATT+AGG + chr7_3:57413476-57413495 Msa1111670:intron 10.0%
!! ATATAAATTATGTAATAAAG+TGG + chr7_3:57413731-57413750 Msa1111670:intron 10.0%
!!! ATTGAACAATACATTTTATT+TGG + chr7_3:57411293-57411312 Msa1111670:CDS 15.0%
!!! TAATTTAATGGTTTTATTGT+TGG + chr7_3:57411694-57411713 Msa1111670:intron 15.0%
!!! TTTAACTTTTGTTATGAAAA+TGG - chr7_3:57413224-57413243 None:intergenic 15.0%
!!! TTATAAATTTTTGGTTTGTT+TGG + chr7_3:57414129-57414148 Msa1111670:three_prime_UTR 15.0%
!! GTTAAGAAAGAATTGTTAAA+TGG - chr7_3:57411201-57411220 None:intergenic 20.0%
!! TTCATTGCTTCTTAATTTAA+TGG + chr7_3:57411682-57411701 Msa1111670:intron 20.0%
!!! TTTTATTGTTGGAATAGTTA+TGG + chr7_3:57411705-57411724 Msa1111670:intron 20.0%
!! ATGACTTAAATTAGATACAT+AGG + chr7_3:57411959-57411978 Msa1111670:intron 20.0%
!! AATTATCTAATAAGACTACT+AGG - chr7_3:57412240-57412259 None:intergenic 20.0%
!!! ATTAGATAATTTGTATCCAT+AGG + chr7_3:57412249-57412268 Msa1111670:intron 20.0%
!!! TTCTACTTAAGATATTTCTA+AGG - chr7_3:57413402-57413421 None:intergenic 20.0%
!! ATTTATATTTCAAACAGACA+AGG - chr7_3:57413719-57413738 None:intergenic 20.0%
!! GAGATAAATATACTTACATT+TGG - chr7_3:57414395-57414414 None:intergenic 20.0%
! GTCTTAAAAAGTAACATTCA+TGG + chr7_3:57411092-57411111 Msa1111670:exon 25.0%
! TAGAATGATTCTTGTTGAAA+AGG - chr7_3:57411230-57411249 None:intergenic 25.0%
! TTGTTCAATAACAAGTCTTT+GGG - chr7_3:57411282-57411301 None:intergenic 25.0%
! ATTGTTCAATAACAAGTCTT+TGG - chr7_3:57411283-57411302 None:intergenic 25.0%
!!! TTGGAGATTTTACTTTTTGT+TGG + chr7_3:57411360-57411379 Msa1111670:CDS 25.0%
!!! TTTGTTTTGGATAGTTTATC+TGG + chr7_3:57411462-57411481 Msa1111670:CDS 25.0%
! GGATAAAGTCATTCTTAAAA+AGG + chr7_3:57411635-57411654 Msa1111670:CDS 25.0%
!! CATTTCAGTAACAAAGTATT+AGG - chr7_3:57411924-57411943 None:intergenic 25.0%
!! ATTAGTTCTTGAGTAAATGA+AGG - chr7_3:57412357-57412376 None:intergenic 25.0%
! CAATTAGTATAAAGAACAGT+TGG - chr7_3:57412674-57412693 None:intergenic 25.0%
! TGTTCTTTATACTAATTGCA+GGG + chr7_3:57412676-57412695 Msa1111670:intron 25.0%
! TCTTAAGAGATGTAATGATT+TGG - chr7_3:57412851-57412870 None:intergenic 25.0%
!!! CAGATTAAAGTCATTGATTT+TGG + chr7_3:57412939-57412958 Msa1111670:CDS 25.0%
! CATAATTCTTTCCTATTCTA+AGG - chr7_3:57412977-57412996 None:intergenic 25.0%
! TTCTGTTATCCTATTCATAT+AGG + chr7_3:57413126-57413145 Msa1111670:intron 25.0%
! GATGTTATAAAGGCTTAATT+AGG - chr7_3:57413170-57413189 None:intergenic 25.0%
! TGATTCTTCTATCAATATCT+TGG - chr7_3:57413335-57413354 None:intergenic 25.0%
!! AGAATGCATTAGTAGTATTT+TGG + chr7_3:57413368-57413387 Msa1111670:intron 25.0%
! GAATACATATCAAAAAGATC+AGG - chr7_3:57413785-57413804 None:intergenic 25.0%
!!! TGCTTTGAAGAATTTCAATT+TGG + chr7_3:57413856-57413875 Msa1111670:CDS 25.0%
! AGAATTTCAATTTGGAAATG+AGG + chr7_3:57413864-57413883 Msa1111670:CDS 25.0%
! ATGGATATGATTTGAACAAA+TGG + chr7_3:57413891-57413910 Msa1111670:CDS 25.0%
! ATATGATTTGAACAAATGGA+GGG + chr7_3:57413895-57413914 Msa1111670:CDS 25.0%
! GTTTATTTCAGTTTATCTAC+CGG + chr7_3:57414156-57414175 Msa1111670:three_prime_UTR 25.0%
! AATAAGCTAGAAACAGTTTA+CGG - chr7_3:57414237-57414256 None:intergenic 25.0%
! CAAAGACTATAACTTACATT+TGG - chr7_3:57414446-57414465 None:intergenic 25.0%
TTATGAGTATGTTGAAGTGT+AGG - chr7_3:57411144-57411163 None:intergenic 30.0%
GAAAGAATTGTTAAATGGAG+TGG - chr7_3:57411196-57411215 None:intergenic 30.0%
TCAACAAGAATCATTCTACA+AGG + chr7_3:57411232-57411251 Msa1111670:CDS 30.0%
TGTTCAATAACAAGTCTTTG+GGG - chr7_3:57411281-57411300 None:intergenic 30.0%
!!! GATTTTACTTTTTGTTGGAC+TGG + chr7_3:57411365-57411384 Msa1111670:CDS 30.0%
! TGCTATTGATGCATATCTTT+TGG + chr7_3:57411428-57411447 Msa1111670:CDS 30.0%
CTATCCAAAACAAATTGCAT+TGG - chr7_3:57411456-57411475 None:intergenic 30.0%
! TTTTGGATAGTTTATCTGGA+AGG + chr7_3:57411466-57411485 Msa1111670:CDS 30.0%
!! TGTTGTTTATTCTGCTGTTT+TGG + chr7_3:57411548-57411567 Msa1111670:CDS 30.0%
! TAAGTTGGATGCTAAATCTA+AGG + chr7_3:57411614-57411633 Msa1111670:CDS 30.0%
ACCAATTCACAATTCACAAA+AGG + chr7_3:57412178-57412197 Msa1111670:CDS 30.0%
! ACCTTTTGTGAATTGTGAAT+TGG - chr7_3:57412182-57412201 None:intergenic 30.0%
AATTCACAATTCACAAAAGG+TGG + chr7_3:57412181-57412200 Msa1111670:CDS 30.0%
AATTCACAAAAGGTGGAAAA+TGG + chr7_3:57412188-57412207 Msa1111670:CDS 30.0%
!!! GTTGGTTTTAACTTTATCCT+TGG + chr7_3:57412310-57412329 Msa1111670:intron 30.0%
! GTAAATGAAGGAGTATAGTA+TGG - chr7_3:57412345-57412364 None:intergenic 30.0%
!!! TAGCGTCACATTTTTTCATA+GGG - chr7_3:57412490-57412509 None:intergenic 30.0%
! TAGCAGAAAAAGAGAGTTTT+AGG + chr7_3:57412578-57412597 Msa1111670:intron 30.0%
ATGTAAGATATACGCATCTT+AGG + chr7_3:57412638-57412657 Msa1111670:intron 30.0%
CTGTTCTTTATACTAATTGC+AGG + chr7_3:57412675-57412694 Msa1111670:intron 30.0%
TGACAGATTCTAAGTTTGAA+GGG - chr7_3:57412758-57412777 None:intergenic 30.0%
ATGACAGATTCTAAGTTTGA+AGG - chr7_3:57412759-57412778 None:intergenic 30.0%
CTTAAGAAAATTCACGATAC+TGG + chr7_3:57412864-57412883 Msa1111670:CDS 30.0%
!!! TTTTTTCGTAACAACCAAGT+TGG - chr7_3:57412916-57412935 None:intergenic 30.0%
AACTTGGTTGTTACGAAAAA+AGG + chr7_3:57412915-57412934 Msa1111670:CDS 30.0%
ACTTGGTTGTTACGAAAAAA+GGG + chr7_3:57412916-57412935 Msa1111670:CDS 30.0%
! GATATCAGCAAAAGAAGTAT+AGG + chr7_3:57413309-57413328 Msa1111670:intron 30.0%
TTTACTATTGTGTTTGCATC+AGG + chr7_3:57413433-57413452 Msa1111670:intron 30.0%
! TCTAGAAATTCTGAAGAGAA+AGG - chr7_3:57413610-57413629 None:intergenic 30.0%
! CTTTTTGATATGTATTCTGC+TGG + chr7_3:57413788-57413807 Msa1111670:CDS 30.0%
AATTTGGAAATGAGGACATA+TGG + chr7_3:57413872-57413891 Msa1111670:CDS 30.0%
GATATGATTTGAACAAATGG+AGG + chr7_3:57413894-57413913 Msa1111670:CDS 30.0%
! GTGAGCTGCTTATAAATTTT+TGG + chr7_3:57414120-57414139 Msa1111670:exon 30.0%
ATAAGCTAGAAACAGTTTAC+GGG - chr7_3:57414236-57414255 None:intergenic 30.0%
!! CTTATTTTCGTAAGATCTCT+TGG + chr7_3:57414251-57414270 Msa1111670:three_prime_UTR 30.0%
TGTAGCTGTTGTAGATAGTA+AGG - chr7_3:57411121-57411140 None:intergenic 35.0%
! TTTTACTTAACTGCAAGACC+AGG + chr7_3:57411393-57411412 Msa1111670:CDS 35.0%
AAGAGGAGTGATTTCTTGAT+TGG + chr7_3:57411498-57411517 Msa1111670:CDS 35.0%
! TTCTTGATTGGTGGTAAGAT+AGG + chr7_3:57411510-57411529 Msa1111670:CDS 35.0%
!!! TTCTGCTGTTTTGGTAACAA+AGG + chr7_3:57411557-57411576 Msa1111670:CDS 35.0%
AAAGAGATGATGCTTAAGAG+TGG + chr7_3:57411585-57411604 Msa1111670:CDS 35.0%
ATGATGCTTAAGAGTGGAAA+AGG + chr7_3:57411591-57411610 Msa1111670:CDS 35.0%
TAAGAGTGGAAAAGGTAAGT+TGG + chr7_3:57411599-57411618 Msa1111670:CDS 35.0%
TCTCATAGCAGATTCAAGTA+CGG - chr7_3:57411778-57411797 None:intergenic 35.0%
TATGAGATTAATCCTCGAGT+TGG + chr7_3:57411791-57411810 Msa1111670:intron 35.0%
!!! CAGAACATCCGATTTTTTCA+CGG + chr7_3:57411817-57411836 Msa1111670:intron 35.0%
!!! AGAACATCCGATTTTTTCAC+GGG + chr7_3:57411818-57411837 Msa1111670:intron 35.0%
GTCAAATCCCGTGAAAAAAT+CGG - chr7_3:57411828-57411847 None:intergenic 35.0%
! AAGAATACGAGTTTGTTTCC+TGG - chr7_3:57411871-57411890 None:intergenic 35.0%
CAAAAATAGAAGCTGATCGA+TGG + chr7_3:57412023-57412042 Msa1111670:intron 35.0%
ATTGAAGGGGCTAAAGAATT+TGG + chr7_3:57412067-57412086 Msa1111670:CDS 35.0%
! AATTTGGTGATTGTGAAGAG+TGG + chr7_3:57412083-57412102 Msa1111670:CDS 35.0%
TACAAAACTTCCAAGGAACT+TGG - chr7_3:57412149-57412168 None:intergenic 35.0%
TATCAGCTACAAAACTTCCA+AGG - chr7_3:57412156-57412175 None:intergenic 35.0%
!! ATGGCTTGTTTGGAAATTTG+AGG + chr7_3:57412207-57412226 Msa1111670:CDS 35.0%
!!! GTTCTGAACTTTTTCAGTGT+TGG + chr7_3:57412292-57412311 Msa1111670:intron 35.0%
AACAGTAGGTGAAATGTGAT+TGG - chr7_3:57412421-57412440 None:intergenic 35.0%
GGCACTATAACAATATAGAG+CGG + chr7_3:57412451-57412470 Msa1111670:intron 35.0%
!!! AGCGTCACATTTTTTCATAG+GGG - chr7_3:57412489-57412508 None:intergenic 35.0%
!!! CTAGCGTCACATTTTTTCAT+AGG - chr7_3:57412491-57412510 None:intergenic 35.0%
TACGCTAATAGAGTGAAACT+AGG - chr7_3:57412514-57412533 None:intergenic 35.0%
TGTGCCTAATTATACACCTT+TGG + chr7_3:57412995-57413014 Msa1111670:CDS 35.0%
! GGATCCAAAGGTGTATAATT+AGG - chr7_3:57413002-57413021 None:intergenic 35.0%
TGTGGTAGAACATATAGTTC+AGG - chr7_3:57413038-57413057 None:intergenic 35.0%
AATAAAACCTGCCACAAGAT+TGG - chr7_3:57413107-57413126 None:intergenic 35.0%
TTAGGCTGTTTATCCAAACA+GGG - chr7_3:57413152-57413171 None:intergenic 35.0%
ATTAGGCTGTTTATCCAAAC+AGG - chr7_3:57413153-57413172 None:intergenic 35.0%
! GATATGCGCTGATGTTATAA+AGG - chr7_3:57413180-57413199 None:intergenic 35.0%
TGGAATTGTACTCTTGCAAA+TGG + chr7_3:57413808-57413827 Msa1111670:CDS 35.0%
AAATGGCAATACCAACCTTA+AGG + chr7_3:57413825-57413844 Msa1111670:CDS 35.0%
CAGAATCACTATCAAGGATT+TGG - chr7_3:57413946-57413965 None:intergenic 35.0%
!! CAAATCCTTGATAGTGATTC+TGG + chr7_3:57413944-57413963 Msa1111670:CDS 35.0%
! TCTTCTTTCGGAACTTCTTT+TGG - chr7_3:57414002-57414021 None:intergenic 35.0%
AAAGAAGTTCCGAAAGAAGA+AGG + chr7_3:57414002-57414021 Msa1111670:CDS 35.0%
AGATAAACGCCTTCTTCTTT+CGG - chr7_3:57414014-57414033 None:intergenic 35.0%
!!! AGGCATCCTTATTTTCTTCT+AGG + chr7_3:57414049-57414068 Msa1111670:CDS 35.0%
!!! CATCCTTATTTTCTTCTAGG+TGG + chr7_3:57414052-57414071 Msa1111670:CDS 35.0%
TCACCACCTAGAAGAAAATA+AGG - chr7_3:57414058-57414077 None:intergenic 35.0%
!! AATGGAGTGGTGAGTTTTAG+AGG - chr7_3:57411183-57411202 None:intergenic 40.0%
TAAGTTTCAGAGTGTGAGTG+AGG + chr7_3:57411317-57411336 Msa1111670:CDS 40.0%
AGGATTTATCAGACATGCAG+AGG + chr7_3:57411337-57411356 Msa1111670:CDS 40.0%
TTTATCAGACATGCAGAGGT+TGG + chr7_3:57411341-57411360 Msa1111670:CDS 40.0%
!!! TACTTTTTGTTGGACTGGCA+TGG + chr7_3:57411370-57411389 Msa1111670:CDS 40.0%
ATAGCACCAATAAGAACACC+TGG - chr7_3:57411414-57411433 None:intergenic 40.0%
!! GGCTCCAATGCAATTTGTTT+TGG + chr7_3:57411449-57411468 Msa1111670:CDS 40.0%
AGGAGTGATTTCTTGATTGG+TGG + chr7_3:57411501-57411520 Msa1111670:CDS 40.0%
! ATTGGTGGTAAGATAGGAGA+AGG + chr7_3:57411516-57411535 Msa1111670:CDS 40.0%
! TTGGTGGTAAGATAGGAGAA+GGG + chr7_3:57411517-57411536 Msa1111670:CDS 40.0%
AAGATAGGAGAAGGGTCATT+TGG + chr7_3:57411525-57411544 Msa1111670:CDS 40.0%
AAACTCGTATTCTTTGCCTG+AGG + chr7_3:57411877-57411896 Msa1111670:intron 40.0%
AACTCGTATTCTTTGCCTGA+GGG + chr7_3:57411878-57411897 Msa1111670:intron 40.0%
AGGTGAAGGTTGGAATTGAA+GGG + chr7_3:57412053-57412072 Msa1111670:intron 40.0%
!! AAGGTGGAAAATGGCTTGTT+TGG + chr7_3:57412197-57412216 Msa1111670:CDS 40.0%
GATGATGCATAGGAAACCTA+TGG - chr7_3:57412268-57412287 None:intergenic 40.0%
! CAGAACTCATGATGATGCAT+AGG - chr7_3:57412278-57412297 None:intergenic 40.0%
TAGTATGGTACTAGACTCCA+AGG - chr7_3:57412330-57412349 None:intergenic 40.0%
CACCTACTGTTGTCAAATAG+CGG + chr7_3:57412430-57412449 Msa1111670:intron 40.0%
TCATGTAATCAGCAAGAGTG+CGG - chr7_3:57412722-57412741 None:intergenic 40.0%
ATGTTTCGAAATGCGTTGCA+AGG + chr7_3:57412777-57412796 Msa1111670:CDS 40.0%
! TTCGTAACAACCAAGTTGGA+AGG - chr7_3:57412912-57412931 None:intergenic 40.0%
GGTAGAACATATAGTTCAGG+AGG - chr7_3:57413035-57413054 None:intergenic 40.0%
GGAAGACTTTGTGTTTCTTG+TGG - chr7_3:57413056-57413075 None:intergenic 40.0%
CAAACAGGGCCTATATGAAT+AGG - chr7_3:57413138-57413157 None:intergenic 40.0%
CTATTCATATAGGCCCTGTT+TGG + chr7_3:57413136-57413155 Msa1111670:intron 40.0%
CTATTGTGTTTGCATCAGGA+AGG + chr7_3:57413437-57413456 Msa1111670:intron 40.0%
CAGGAAGGATATTCAGATTG+TGG + chr7_3:57413452-57413471 Msa1111670:intron 40.0%
TACACAGTCTGTTTGCTTGA+GGG - chr7_3:57413674-57413693 None:intergenic 40.0%
ATACACAGTCTGTTTGCTTG+AGG - chr7_3:57413675-57413694 None:intergenic 40.0%
CTCTACCAGAATCACTATCA+AGG - chr7_3:57413952-57413971 None:intergenic 40.0%
!! CTTGATAGTGATTCTGGTAG+AGG + chr7_3:57413950-57413969 Msa1111670:CDS 40.0%
ATAGTGATTCTGGTAGAGGT+TGG + chr7_3:57413954-57413973 Msa1111670:CDS 40.0%
TAGTGATTCTGGTAGAGGTT+GGG + chr7_3:57413955-57413974 Msa1111670:CDS 40.0%
! TATCTGCTGCTTCTGCTTTA+AGG + chr7_3:57414029-57414048 Msa1111670:CDS 40.0%
! TTTTCTTCTAGGTGGTGATC+AGG + chr7_3:57414060-57414079 Msa1111670:CDS 40.0%
AGACTGCTTGAGAAAGCTTA+TGG + chr7_3:57414193-57414212 Msa1111670:three_prime_UTR 40.0%
ACAGTTTACGGGCATGTTAT+AGG - chr7_3:57414225-57414244 None:intergenic 40.0%
GCAAGACCAGGTGTTCTTAT+TGG + chr7_3:57411405-57411424 Msa1111670:CDS 45.0%
CTGGAAGGAGAGATTTGAAG+AGG + chr7_3:57411481-57411500 Msa1111670:CDS 45.0%
GTTTCCTGGAGTCACTCATT+TGG - chr7_3:57411857-57411876 None:intergenic 45.0%
AGCTGATCGATGGAAAATGC+AGG + chr7_3:57412033-57412052 Msa1111670:intron 45.0%
TCGATGGAAAATGCAGGTGA+AGG + chr7_3:57412039-57412058 Msa1111670:intron 45.0%
TGGAAAATGCAGGTGAAGGT+TGG + chr7_3:57412043-57412062 Msa1111670:intron 45.0%
CAGGTGAAGGTTGGAATTGA+AGG + chr7_3:57412052-57412071 Msa1111670:intron 45.0%
GGTGAAGGTTGGAATTGAAG+GGG + chr7_3:57412054-57412073 Msa1111670:intron 45.0%
AGGAACTTGGCACATGTTTC+AGG - chr7_3:57412136-57412155 None:intergenic 45.0%
GAAACATGTGCCAAGTTCCT+TGG + chr7_3:57412136-57412155 Msa1111670:CDS 45.0%
TGCCGCTATTTGACAACAGT+AGG - chr7_3:57412435-57412454 None:intergenic 45.0%
ACGATACTGGCATTGTTCAC+AGG + chr7_3:57412877-57412896 Msa1111670:CDS 45.0%
CGATACTGGCATTGTTCACA+GGG + chr7_3:57412878-57412897 Msa1111670:CDS 45.0%
GGATGTAAAGCCTTCCAACT+TGG + chr7_3:57412899-57412918 Msa1111670:CDS 45.0%
GCAGCAACAGACCTTAGAAT+AGG + chr7_3:57412963-57412982 Msa1111670:CDS 45.0%
GGACAGTAATCAGGATCCAA+AGG - chr7_3:57413014-57413033 None:intergenic 45.0%
AGTTCAGGAGGACAGTAATC+AGG - chr7_3:57413023-57413042 None:intergenic 45.0%
!! AAAGCTGCAATTGGTTCTGG+AGG - chr7_3:57413077-57413096 None:intergenic 45.0%
! AGCAAAGCTGCAATTGGTTC+TGG - chr7_3:57413080-57413099 None:intergenic 45.0%
CTTTGCTCTCACCAATCTTG+TGG + chr7_3:57413093-57413112 Msa1111670:CDS 45.0%
CAAAGCAGCTTGAGACCTTA+AGG - chr7_3:57413843-57413862 None:intergenic 45.0%
AGTCTCACACGTGTTTATGC+CGG - chr7_3:57414178-57414197 None:intergenic 45.0%
CCTGGAGTCACTCATTTGGA+AGG - chr7_3:57411853-57411872 None:intergenic 50.0%
CCTTCCAAATGAGTGACTCC+AGG + chr7_3:57411850-57411869 Msa1111670:intron 50.0%
! TGATAACGTGACTCTCCCTC+AGG - chr7_3:57411896-57411915 None:intergenic 50.0%
! CCACATCGGCTAGCAAAATC+TGG - chr7_3:57412552-57412571 None:intergenic 50.0%
! CCAGATTTTGCTAGCCGATG+TGG + chr7_3:57412549-57412568 Msa1111670:intron 50.0%
! GATTTTGCTAGCCGATGTGG+CGG + chr7_3:57412552-57412571 Msa1111670:intron 50.0%
TTCTGCTAATGCCGCCACAT+CGG - chr7_3:57412566-57412585 None:intergenic 50.0%
TGCAGGGTTGTCCATATCAC+AGG + chr7_3:57412692-57412711 Msa1111670:intron 50.0%
GCAGGGTTGTCCATATCACA+GGG + chr7_3:57412693-57412712 Msa1111670:intron 50.0%
GGTGAGAGCAAAGCTGCAAT+TGG - chr7_3:57413086-57413105 None:intergenic 50.0%
GCAGCTTGAGACCTTAAGGT+TGG - chr7_3:57413839-57413858 None:intergenic 50.0%
GATGTTCTGCTGCCAACTCG+AGG - chr7_3:57411806-57411825 None:intergenic 55.0%
AGTGCGGTCTCCCTGTGATA+TGG - chr7_3:57412706-57412725 None:intergenic 55.0%
GCTCTCACCAATCTTGTGGC+AGG + chr7_3:57413097-57413116 Msa1111670:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 57411030 57414473 57411030 ID=Msa1111670;Name=Msa1111670
chr7_3 mRNA 57411030 57414473 57411030 ID=Msa1111670-mRNA-1;Parent=Msa1111670;Name=Msa1111670-mRNA-1;_AED=0.23;_eAED=0.23;_QI=81|1|1|1|1|1|4|350|490
chr7_3 exon 57411030 57411656 57411030 ID=Msa1111670-mRNA-1:exon:12385;Parent=Msa1111670-mRNA-1
chr7_3 exon 57412055 57412228 57412055 ID=Msa1111670-mRNA-1:exon:12386;Parent=Msa1111670-mRNA-1
chr7_3 exon 57412714 57413118 57412714 ID=Msa1111670-mRNA-1:exon:12387;Parent=Msa1111670-mRNA-1
chr7_3 exon 57413776 57414473 57413776 ID=Msa1111670-mRNA-1:exon:12388;Parent=Msa1111670-mRNA-1
chr7_3 five_prime_UTR 57411030 57411110 57411030 ID=Msa1111670-mRNA-1:five_prime_utr;Parent=Msa1111670-mRNA-1
chr7_3 CDS 57411111 57411656 57411111 ID=Msa1111670-mRNA-1:cds;Parent=Msa1111670-mRNA-1
chr7_3 CDS 57412055 57412228 57412055 ID=Msa1111670-mRNA-1:cds;Parent=Msa1111670-mRNA-1
chr7_3 CDS 57412714 57413118 57412714 ID=Msa1111670-mRNA-1:cds;Parent=Msa1111670-mRNA-1
chr7_3 CDS 57413776 57414123 57413776 ID=Msa1111670-mRNA-1:cds;Parent=Msa1111670-mRNA-1
chr7_3 three_prime_UTR 57414124 57414473 57414124 ID=Msa1111670-mRNA-1:three_prime_utr;Parent=Msa1111670-mRNA-1
Gene Sequence

>Msa1111670

ATGGCTTCCTTACTATCTACAACAGCTACACCTACACTTCAACATACTCATAATAAAATCTGTTTCTCTCCTCTAAAACTCACCACTCCATTTAACAATTCTTTCTTAACAACAAACCTTTTCAACAAGAATCATTCTACAAGGTGCAATGCATTTTTTGACATCATCCCCAAAGACTTGTTATTGAACAATACATTTTATTTGGATAAGTTTCAGAGTGTGAGTGAGGATTTATCAGACATGCAGAGGTTGGAGATTTTACTTTTTGTTGGACTGGCATGGTTTTACTTAACTGCAAGACCAGGTGTTCTTATTGGTGCTATTGATGCATATCTTTTGGCTCCAATGCAATTTGTTTTGGATAGTTTATCTGGAAGGAGAGATTTGAAGAGGAGTGATTTCTTGATTGGTGGTAAGATAGGAGAAGGGTCATTTGGTGTTGTTTATTCTGCTGTTTTGGTAACAAAGGATGTGAAAGAGATGATGCTTAAGAGTGGAAAAGGTAAGTTGGATGCTAAATCTAAGGATAAAGTCATTCTTAAAAAGGTGAAGGTTGGAATTGAAGGGGCTAAAGAATTTGGTGATTGTGAAGAGTGGTTCAATTATAGACTCTCAAGAGCAGCTCCTGAAACATGTGCCAAGTTCCTTGGAAGTTTTGTAGCTGATAAAACCAATTCACAATTCACAAAAGGTGGAAAATGGCTTGTTTGGAAATTTGAGGGAGACCGCACTCTTGCTGATTACATGACAGATAAAAACTTCCCTTCAAACTTAGAATCTGTCATGTTTCGAAATGCGTTGCAAGGTGTAGACTCTTCTAAAAGAAATGCACTGATCATCAAGCAAATAATGCGCCAAATCATTACATCTCTTAAGAAAATTCACGATACTGGCATTGTTCACAGGGATGTAAAGCCTTCCAACTTGGTTGTTACGAAAAAAGGGCAGATTAAAGTCATTGATTTTGGTGCAGCAACAGACCTTAGAATAGGAAAGAATTATGTGCCTAATTATACACCTTTGGATCCTGATTACTGTCCTCCTGAACTATATGTTCTACCACAAGAAACACAAAGTCTTCCTCCAGAACCAATTGCAGCTTTGCTCTCACCAATCTTGTGGCAGTTAAGTCCTGATCTTTTTGATATGTATTCTGCTGGAATTGTACTCTTGCAAATGGCAATACCAACCTTAAGGTCTCAAGCTGCTTTGAAGAATTTCAATTTGGAAATGAGGACATATGGATATGATTTGAACAAATGGAGGGACTCTACTCGCATGAAGTCTAACTTCCAAATCCTTGATAGTGATTCTGGTAGAGGTTGGGACTTAGCATCAAAGCTTATCTCCAAAAGAAGTTCCGAAAGAAGAAGGCGTTTATCTGCTGCTTCTGCTTTAAGGCATCCTTATTTTCTTCTAGGTGGTGATCAGGCAGCTGCAGTTCTTTCAAAATTCAGCTTTAGCACAAAGTGA

Protein sequence

>Msa1111670

MASLLSTTATPTLQHTHNKICFSPLKLTTPFNNSFLTTNLFNKNHSTRCNAFFDIIPKDLLLNNTFYLDKFQSVSEDLSDMQRLEILLFVGLAWFYLTARPGVLIGAIDAYLLAPMQFVLDSLSGRRDLKRSDFLIGGKIGEGSFGVVYSAVLVTKDVKEMMLKSGKGKLDAKSKDKVILKKVKVGIEGAKEFGDCEEWFNYRLSRAAPETCAKFLGSFVADKTNSQFTKGGKWLVWKFEGDRTLADYMTDKNFPSNLESVMFRNALQGVDSSKRNALIIKQIMRQIITSLKKIHDTGIVHRDVKPSNLVVTKKGQIKVIDFGAATDLRIGKNYVPNYTPLDPDYCPPELYVLPQETQSLPPEPIAALLSPILWQLSPDLFDMYSAGIVLLQMAIPTLRSQAALKNFNLEMRTYGYDLNKWRDSTRMKSNFQILDSDSGRGWDLASKLISKRSSERRRRLSAASALRHPYFLLGGDQAAAVLSKFSFSTK*