AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0634260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0634260 MtrunA17_Chr4g0013251 93.162 117 8 0 1 117 1 117 6.26e-75 217
Msa0634260 MtrunA17_Chr4g0013261 83.761 117 19 0 1 117 1 117 2.59e-66 196
Msa0634260 MtrunA17_Chr4g0012951 64.103 117 39 2 1 116 1 115 1.96e-45 143
Msa0634260 MtrunA17_Chr4g0013001 61.538 117 42 2 1 116 1 115 3.90e-44 139
Msa0634260 MtrunA17_Chr4g0012991 62.393 117 41 2 1 116 56 170 1.71e-43 140
Msa0634260 MtrunA17_Chr4g0012961 60.684 117 43 2 1 116 1 115 1.83e-43 138
Msa0634260 MtrunA17_Chr4g0013211 50.000 116 57 1 1 116 1 115 1.30e-32 110
Msa0634260 MtrunA17_Chr4g0012891 45.299 117 55 4 8 116 11 126 1.15e-25 93.2
Msa0634260 MtrunA17_Chr4g0012901 41.026 117 68 1 1 116 5 121 4.49e-25 91.7
Msa0634260 MtrunA17_Chr7g0244691 40.000 110 63 2 10 117 12 120 2.70e-23 87.0
Msa0634260 MtrunA17_Chr3g0107481 34.821 112 73 0 5 116 3 114 4.38e-20 78.6
Msa0634260 MtrunA17_Chr7g0244831 38.655 119 69 3 2 117 3 120 7.32e-20 78.2
Msa0634260 MtrunA17_Chr7g0244671 35.088 114 67 3 7 113 4 117 1.30e-18 75.9
Msa0634260 MtrunA17_Chr2g0309241 34.906 106 67 2 11 115 10 114 3.22e-18 73.9
Msa0634260 MtrunA17_Chr3g0104971 34.483 116 73 2 3 116 8 122 4.19e-18 73.9
Msa0634260 MtrunA17_Chr3g0104951 34.483 116 73 2 3 116 8 122 5.55e-18 73.6
Msa0634260 MtrunA17_Chr3g0104931 34.483 116 73 2 3 116 8 122 5.55e-18 73.6
Msa0634260 MtrunA17_Chr3g0104941 34.483 116 73 2 3 116 8 122 5.55e-18 73.6
Msa0634260 MtrunA17_Chr7g0244641 33.898 118 73 4 2 115 3 119 5.82e-18 73.6
Msa0634260 MtrunA17_Chr7g0244841 36.937 111 64 5 10 117 12 119 7.20e-18 73.2
Msa0634260 MtrunA17_Chr3g0104981 34.783 115 72 2 3 115 8 121 7.82e-18 73.2
Msa0634260 MtrunA17_Chr3g0101431 33.621 116 74 2 3 116 7 121 8.71e-18 73.2
Msa0634260 MtrunA17_Chr3g0105001 35.088 114 71 2 3 114 8 120 9.37e-18 72.8
Msa0634260 MtrunA17_Chr3g0105021 33.621 116 74 2 3 116 8 122 1.16e-17 72.8
Msa0634260 MtrunA17_Chr3g0105011 33.621 116 74 2 3 116 8 122 1.16e-17 72.8
Msa0634260 MtrunA17_Chr3g0105041 34.483 116 73 2 3 116 8 122 2.75e-17 71.6
Msa0634260 MtrunA17_Chr3g0104991 35.088 114 69 3 7 116 10 122 3.20e-17 71.6
Msa0634260 MtrunA17_Chr3g0104921 34.234 111 70 2 8 116 3 112 5.05e-17 70.9
Msa0634260 MtrunA17_Chr3g0104911 34.234 111 70 2 8 116 3 112 5.05e-17 70.9
Msa0634260 MtrunA17_Chr3g0104961 33.621 116 74 2 3 116 8 122 7.19e-17 70.9
Msa0634260 MtrunA17_Chr3g0104901 33.043 115 74 2 4 116 9 122 7.84e-17 70.5
Msa0634260 MtrunA17_Chr3g0095991 31.579 114 75 2 3 114 8 120 2.42e-16 69.3
Msa0634260 MtrunA17_Chr4g0012921 33.898 118 76 2 1 116 1 118 3.48e-16 68.9
Msa0634260 MtrunA17_Chr3g0095931 34.513 113 68 3 4 114 9 117 4.00e-16 68.6
Msa0634260 MtrunA17_Chr4g0012931 35.833 120 71 3 1 116 1 118 6.17e-16 68.6
Msa0634260 MtrunA17_Chr3g0105031 34.234 111 68 3 8 114 1 110 1.21e-15 67.4
Msa0634260 MtrunA17_Chr3g0096021 31.579 114 75 2 3 114 8 120 2.10e-15 67.0
Msa0634260 MtrunA17_Chr3g0094521 32.759 116 74 3 3 115 8 122 2.16e-15 67.0
Msa0634260 MtrunA17_Chr7g0233431 32.110 109 69 2 8 115 26 130 2.92e-15 67.0
Msa0634260 MtrunA17_Chr3g0096031 31.579 114 75 2 3 114 8 120 3.56e-15 66.2
Msa0634260 MtrunA17_Chr3g0095951 30.702 114 76 2 3 114 8 120 5.84e-15 65.9
Msa0634260 MtrunA17_Chr7g0244811 33.333 120 75 3 1 115 1 120 1.68e-14 64.7
Msa0634260 MtrunA17_Chr7g0244741 34.746 118 73 2 2 115 3 120 7.03e-14 63.2
Msa0634260 MtrunA17_Chr7g0244821 32.456 114 74 3 2 113 3 115 6.94e-13 60.5
Msa0634260 MtrunA17_Chr7g0244681 38.053 113 64 5 4 113 7 116 2.91e-12 58.9
Msa0634260 MtrunA17_Chr1g0165761 38.333 120 67 5 1 115 1 118 3.68e-12 58.5
Msa0634260 MtrunA17_Chr7g0244721 30.769 117 78 2 2 115 3 119 7.39e-12 57.8
Msa0634260 MtrunA17_Chr7g0244791 32.759 116 72 3 6 115 8 123 8.80e-11 55.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0634260 AT5G59320.1 50.000 110 52 1 7 116 9 115 4.91e-29 102
Msa0634260 AT5G59310.1 52.475 101 45 1 16 116 15 112 2.05e-27 97.8
Msa0634260 AT3G51590.1 45.872 109 53 3 12 115 8 115 1.36e-24 90.9
Msa0634260 AT2G38540.1 44.538 119 62 4 1 116 1 118 2.21e-23 87.8
Msa0634260 AT4G33355.1 44.348 115 57 1 1 115 11 118 5.98e-23 86.7
Msa0634260 AT4G33355.2 43.363 113 57 1 1 113 11 116 9.57e-22 83.6
Msa0634260 AT5G01870.1 39.655 116 66 3 4 116 2 116 1.12e-21 83.2
Msa0634260 AT3G51600.1 40.678 118 68 2 1 116 1 118 3.50e-21 82.0
Msa0634260 AT2G15050.3 40.179 112 60 4 12 116 11 122 1.02e-20 80.9
Msa0634260 AT2G38530.1 44.348 115 57 3 9 116 4 118 1.36e-20 80.5
Msa0634260 AT2G15050.1 40.909 110 58 4 12 114 11 120 9.27e-20 78.6
Msa0634260 AT2G15050.2 41.748 103 55 3 12 109 11 113 2.93e-19 77.0
Msa0634260 AT3G08770.1 43.158 95 50 3 25 116 20 113 7.54e-19 75.9
Msa0634260 AT3G08770.2 43.011 93 49 3 25 114 20 111 8.40e-18 73.2
Msa0634260 AT2G18370.1 31.034 116 78 2 1 115 1 115 6.80e-15 65.9

Find 55 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTAGAAGTGCTAAACTTAT+AGG 0.238471 4_3:+21173300 None:intergenic
GCACTTCTACCAACTGTAAT+AGG 0.262122 4_3:-21173288 Msa0634260:intron
AGATAAGGGAGGGAGGTATT+TGG 0.314023 4_3:+21173729 None:intergenic
GATAAGTAATGCATGGAATA+AGG 0.317466 4_3:+21173506 None:intergenic
CATGTGGCTGCCTCTGCTAT+TGG 0.339290 4_3:+21173547 None:intergenic
CCATCTCCACAGTGCTGTGC+TGG 0.355566 4_3:-21173466 Msa0634260:CDS
CCATGCATTACTTATCTTCA+AGG 0.366651 4_3:-21173499 Msa0634260:CDS
TTGCAAGCAGCCTTGCGAGC+CGG 0.406399 4_3:+21173409 None:intergenic
GATGGTTTATATAGAAGATA+AGG 0.410016 4_3:+21173714 None:intergenic
CAACACTGGCCCGGCTCGCA+AGG 0.417244 4_3:-21173419 Msa0634260:CDS
AAGCTTGCCATTGTTTCTCT+AGG 0.417833 4_3:+21173619 None:intergenic
CACAGTGCTGTGCTGGAGTA+AGG 0.420837 4_3:-21173459 Msa0634260:CDS
TGCAAGCAGCCTTGCGAGCC+GGG 0.430405 4_3:+21173410 None:intergenic
GTAGAAGTGCTAAACTTATA+GGG 0.434237 4_3:+21173301 None:intergenic
TGCAATTATGTGCATGGTGG+TGG 0.439721 4_3:-21173578 Msa0634260:CDS
GAATTTACTAGTGAGAATAA+AGG 0.442304 4_3:-21172506 Msa0634260:three_prime_UTR
CTTGCGAGCCGGGCCAGTGT+TGG 0.451576 4_3:+21173420 None:intergenic
CGCCGCCGCCAACACTGGCC+CGG 0.466490 4_3:-21173428 Msa0634260:CDS
AGCCGGGCCAGTGTTGGCGG+CGG 0.471641 4_3:+21173426 None:intergenic
ACTTATCTTCAAGGAGGTGC+TGG 0.481218 4_3:-21173490 Msa0634260:CDS
GCGAGCCGGGCCAGTGTTGG+CGG 0.487316 4_3:+21173423 None:intergenic
GCTGCTCTCCCTGGCAAATG+TGG 0.495611 4_3:-21173334 Msa0634260:CDS
CTTAACGCCGCCGCCAACAC+TGG 0.495662 4_3:-21173433 Msa0634260:CDS
ATGGTTTATATAGAAGATAA+GGG 0.500234 4_3:+21173715 None:intergenic
CCAGCACAGCACTGTGGAGA+TGG 0.501400 4_3:+21173466 None:intergenic
AGAATAAAGGAATGGCTATG+AGG 0.511521 4_3:-21172493 Msa0634260:three_prime_UTR
AACCAAGCTGCTGCTCTCCC+TGG 0.514408 4_3:-21173343 Msa0634260:CDS
AGCTTGCCATTGTTTCTCTA+GGG 0.525601 4_3:+21173620 None:intergenic
TGCCAGGGAGAGCAGCAGCT+TGG 0.525683 4_3:+21173341 None:intergenic
GTTGTTATTCAAACGAGCAA+TGG 0.551011 4_3:+21173363 None:intergenic
TTCTTTCCCTAGAGAAACAA+TGG 0.553867 4_3:-21173626 Msa0634260:exon
TTTATATAGAAGATAAGGGA+GGG 0.554669 4_3:+21173719 None:intergenic
GTTTATATAGAAGATAAGGG+AGG 0.564752 4_3:+21173718 None:intergenic
AACTGCTTGAAAAGTGCTGC+TGG 0.566956 4_3:-21173388 Msa0634260:CDS
CAAGAGGAAACTCGCAGAGG+TGG 0.575855 4_3:+21172467 None:intergenic
GTATAAGTGTTGCAAGGTGA+TGG 0.576926 4_3:+21173696 None:intergenic
ATCAACTAGTTGACCGCATG+TGG 0.580514 4_3:+21173531 None:intergenic
AAAGAAAGAAGAAGATAGCA+TGG 0.581689 4_3:-21172567 Msa0634260:three_prime_UTR
GAATAAAGGAATGGCTATGA+GGG 0.583458 4_3:-21172492 Msa0634260:three_prime_UTR
GTAAATTCTACAGCTAGTGC+TGG 0.585611 4_3:+21172521 None:intergenic
CCTTGAAGATAAGTAATGCA+TGG 0.589008 4_3:+21173499 None:intergenic
TACTAGTGAGAATAAAGGAA+TGG 0.589216 4_3:-21172501 Msa0634260:three_prime_UTR
AATTATAAGTCTGAAACAAG+AGG 0.592877 4_3:+21172451 None:intergenic
TGTGGTTGCAATTATGTGCA+TGG 0.608819 4_3:-21173584 Msa0634260:CDS
TAAAACATACCTATTACAGT+TGG 0.611499 4_3:+21173279 None:intergenic
ATATAGAAGATAAGGGAGGG+AGG 0.614175 4_3:+21173722 None:intergenic
CATGGAATAGTATATATCAA+AGG 0.615290 4_3:+21172411 None:intergenic
GGTTAGTGCACCAATAGCAG+AGG 0.668844 4_3:-21173557 Msa0634260:CDS
TGCATTACTTATCTTCAAGG+AGG 0.675764 4_3:-21173496 Msa0634260:CDS
AAGCTTGAGAGTTACAATTG+TGG 0.688534 4_3:-21173602 Msa0634260:CDS
CTTACTCCAGCACAGCACTG+TGG 0.718135 4_3:+21173460 None:intergenic
TGGTGAGTATAAGTGTTGCA+AGG 0.718396 4_3:+21173690 None:intergenic
GGTTGCAATTATGTGCATGG+TGG 0.720687 4_3:-21173581 Msa0634260:CDS
ATAGCAGAGGCAGCCACATG+CGG 0.724717 4_3:-21173544 Msa0634260:CDS
AAACAAGAGGAAACTCGCAG+AGG 0.734402 4_3:+21172464 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAATTAAATATTTTGAAAT+TGG + chr4_3:21172404-21172423 None:intergenic 10.0%
!! AAGAGTTATATATATAATTA+GGG + chr4_3:21172923-21172942 None:intergenic 10.0%
!! TAAGAGTTATATATATAATT+AGG + chr4_3:21172924-21172943 None:intergenic 10.0%
!!! CAAATTAAATATTTTGAAAT+TGG + chr4_3:21172404-21172423 None:intergenic 10.0%
!! AAGAGTTATATATATAATTA+GGG + chr4_3:21172923-21172942 None:intergenic 10.0%
!! TAAGAGTTATATATATAATT+AGG + chr4_3:21172924-21172943 None:intergenic 10.0%
!! CTTTATTGGAATTAAAAAAT+AGG - chr4_3:21172350-21172369 Msa0634260:three_prime_UTR 15.0%
!! TATAACTCTTAAAAATTTCT+AGG - chr4_3:21172933-21172952 Msa0634260:intron 15.0%
!! AAACAATACCTTAAAAAAAA+AGG - chr4_3:21172978-21172997 Msa0634260:intron 15.0%
!!! TCATTTTACCTTTTTTTTTA+AGG + chr4_3:21172989-21173008 None:intergenic 15.0%
!! ATTGAAATTGAAATGATAAT+TGG - chr4_3:21173141-21173160 Msa0634260:intron 15.0%
!!! ATATGTGTCATTTATTTTTT+TGG - chr4_3:21173174-21173193 Msa0634260:intron 15.0%
!! TAATTAGGTATTATTATAAC+AGG - chr4_3:21173222-21173241 Msa0634260:intron 15.0%
!! AATTAGGTATTATTATAACA+GGG - chr4_3:21173223-21173242 Msa0634260:intron 15.0%
!!! TTTATTTTTTTTAAAGAGCA+TGG + chr4_3:21173777-21173796 None:intergenic 15.0%
!! CTTTATTGGAATTAAAAAAT+AGG - chr4_3:21172350-21172369 Msa0634260:three_prime_UTR 15.0%
!! TATAACTCTTAAAAATTTCT+AGG - chr4_3:21172933-21172952 Msa0634260:intron 15.0%
!! AAACAATACCTTAAAAAAAA+AGG - chr4_3:21172978-21172997 Msa0634260:intron 15.0%
!!! TCATTTTACCTTTTTTTTTA+AGG + chr4_3:21172989-21173008 None:intergenic 15.0%
!! ATTGAAATTGAAATGATAAT+TGG - chr4_3:21173141-21173160 Msa0634260:intron 15.0%
!!! ATATGTGTCATTTATTTTTT+TGG - chr4_3:21173174-21173193 Msa0634260:intron 15.0%
!! TAATTAGGTATTATTATAAC+AGG - chr4_3:21173222-21173241 Msa0634260:intron 15.0%
!! AATTAGGTATTATTATAACA+GGG - chr4_3:21173223-21173242 Msa0634260:intron 15.0%
!!! TTTATTTTTTTTAAAGAGCA+TGG + chr4_3:21173777-21173796 None:intergenic 15.0%
!! ATGGTTTATATAGAAGATAA+GGG + chr4_3:21172455-21172474 None:intergenic 20.0%
!! TATTGTTTATATTTGTTTCC+AGG + chr4_3:21172966-21172985 None:intergenic 20.0%
!! AGCAGAAAATCAATTTATAA+TGG - chr4_3:21173030-21173049 Msa0634260:intron 20.0%
!!! TTGAAGCTTTATAAAATAAG+TGG - chr4_3:21173281-21173300 Msa0634260:intron 20.0%
!! TATCATATTAAAAAGTAGCA+TGG + chr4_3:21173807-21173826 None:intergenic 20.0%
!!! TGCTACTTTTTAATATGATA+TGG - chr4_3:21173807-21173826 Msa0634260:five_prime_UTR 20.0%
!!! GCTACTTTTTAATATGATAT+GGG - chr4_3:21173808-21173827 Msa0634260:five_prime_UTR 20.0%
!! ATGGTTTATATAGAAGATAA+GGG + chr4_3:21172455-21172474 None:intergenic 20.0%
!! TATTGTTTATATTTGTTTCC+AGG + chr4_3:21172966-21172985 None:intergenic 20.0%
!! AGCAGAAAATCAATTTATAA+TGG - chr4_3:21173030-21173049 Msa0634260:intron 20.0%
!!! TTGAAGCTTTATAAAATAAG+TGG - chr4_3:21173281-21173300 Msa0634260:intron 20.0%
!! TATCATATTAAAAAGTAGCA+TGG + chr4_3:21173807-21173826 None:intergenic 20.0%
!!! TGCTACTTTTTAATATGATA+TGG - chr4_3:21173807-21173826 Msa0634260:five_prime_UTR 20.0%
!!! GCTACTTTTTAATATGATAT+GGG - chr4_3:21173808-21173827 Msa0634260:five_prime_UTR 20.0%
! TTTATATAGAAGATAAGGGA+GGG + chr4_3:21172451-21172470 None:intergenic 25.0%
! GATGGTTTATATAGAAGATA+AGG + chr4_3:21172456-21172475 None:intergenic 25.0%
! TAAAACATACCTATTACAGT+TGG + chr4_3:21172891-21172910 None:intergenic 25.0%
!! TTTTTGTCATCATCTTAGTT+TGG + chr4_3:21173110-21173129 None:intergenic 25.0%
! GAAATTGAAATGATAATTGG+AGG - chr4_3:21173144-21173163 Msa0634260:intron 25.0%
!!! GTACATGTGTCATTTTAATT+AGG - chr4_3:21173207-21173226 Msa0634260:intron 25.0%
!!! CAGGGTTTTTTTTAACTAAA+AGG - chr4_3:21173241-21173260 Msa0634260:intron 25.0%
!!! ATGATTGACTTATGCAATTT+TGG - chr4_3:21173313-21173332 Msa0634260:CDS 25.0%
!! TAGCATTACTTTCATTTTGA+TGG + chr4_3:21173343-21173362 None:intergenic 25.0%
! GAATTTACTAGTGAGAATAA+AGG - chr4_3:21173661-21173680 Msa0634260:five_prime_UTR 25.0%
!! AATTATAAGTCTGAAACAAG+AGG + chr4_3:21173719-21173738 None:intergenic 25.0%
! CATGGAATAGTATATATCAA+AGG + chr4_3:21173759-21173778 None:intergenic 25.0%
! TTTATATAGAAGATAAGGGA+GGG + chr4_3:21172451-21172470 None:intergenic 25.0%
! GATGGTTTATATAGAAGATA+AGG + chr4_3:21172456-21172475 None:intergenic 25.0%
! TAAAACATACCTATTACAGT+TGG + chr4_3:21172891-21172910 None:intergenic 25.0%
!! TTTTTGTCATCATCTTAGTT+TGG + chr4_3:21173110-21173129 None:intergenic 25.0%
! GAAATTGAAATGATAATTGG+AGG - chr4_3:21173144-21173163 Msa0634260:intron 25.0%
!!! GTACATGTGTCATTTTAATT+AGG - chr4_3:21173207-21173226 Msa0634260:intron 25.0%
!!! CAGGGTTTTTTTTAACTAAA+AGG - chr4_3:21173241-21173260 Msa0634260:intron 25.0%
!!! ATGATTGACTTATGCAATTT+TGG - chr4_3:21173313-21173332 Msa0634260:CDS 25.0%
!! TAGCATTACTTTCATTTTGA+TGG + chr4_3:21173343-21173362 None:intergenic 25.0%
! GAATTTACTAGTGAGAATAA+AGG - chr4_3:21173661-21173680 Msa0634260:five_prime_UTR 25.0%
!! AATTATAAGTCTGAAACAAG+AGG + chr4_3:21173719-21173738 None:intergenic 25.0%
! CATGGAATAGTATATATCAA+AGG + chr4_3:21173759-21173778 None:intergenic 25.0%
GTTTATATAGAAGATAAGGG+AGG + chr4_3:21172452-21172471 None:intergenic 30.0%
!!! GTGTTTTCTTTTGTTTTGCT+TGG + chr4_3:21172500-21172519 None:intergenic 30.0%
GATAAGTAATGCATGGAATA+AGG + chr4_3:21172664-21172683 None:intergenic 30.0%
!! GTAGAAGTGCTAAACTTATA+GGG + chr4_3:21172869-21172888 None:intergenic 30.0%
!! AAATTTCTAGGATTCAAACC+TGG - chr4_3:21172945-21172964 Msa0634260:intron 30.0%
ATTGAAATGATAATTGGAGG+AGG - chr4_3:21173147-21173166 Msa0634260:intron 30.0%
AAAGAAACATCTATATGCTC+AGG + chr4_3:21173479-21173498 None:intergenic 30.0%
AAAGAAAGAAGAAGATAGCA+TGG - chr4_3:21173600-21173619 Msa0634260:CDS 30.0%
TACTAGTGAGAATAAAGGAA+TGG - chr4_3:21173666-21173685 Msa0634260:five_prime_UTR 30.0%
GTTTATATAGAAGATAAGGG+AGG + chr4_3:21172452-21172471 None:intergenic 30.0%
!!! GTGTTTTCTTTTGTTTTGCT+TGG + chr4_3:21172500-21172519 None:intergenic 30.0%
GATAAGTAATGCATGGAATA+AGG + chr4_3:21172664-21172683 None:intergenic 30.0%
!! GTAGAAGTGCTAAACTTATA+GGG + chr4_3:21172869-21172888 None:intergenic 30.0%
!! AAATTTCTAGGATTCAAACC+TGG - chr4_3:21172945-21172964 Msa0634260:intron 30.0%
ATTGAAATGATAATTGGAGG+AGG - chr4_3:21173147-21173166 Msa0634260:intron 30.0%
AAAGAAACATCTATATGCTC+AGG + chr4_3:21173479-21173498 None:intergenic 30.0%
AAAGAAAGAAGAAGATAGCA+TGG - chr4_3:21173600-21173619 Msa0634260:CDS 30.0%
TACTAGTGAGAATAAAGGAA+TGG - chr4_3:21173666-21173685 Msa0634260:five_prime_UTR 30.0%
TTCTTTCCCTAGAGAAACAA+TGG - chr4_3:21172541-21172560 Msa0634260:three_prime_UTR 35.0%
AAGCTTGAGAGTTACAATTG+TGG - chr4_3:21172565-21172584 Msa0634260:three_prime_UTR 35.0%
CCTTGAAGATAAGTAATGCA+TGG + chr4_3:21172671-21172690 None:intergenic 35.0%
CCATGCATTACTTATCTTCA+AGG - chr4_3:21172668-21172687 Msa0634260:intron 35.0%
TGCATTACTTATCTTCAAGG+AGG - chr4_3:21172671-21172690 Msa0634260:intron 35.0%
! GTTGTTATTCAAACGAGCAA+TGG + chr4_3:21172807-21172826 None:intergenic 35.0%
! TTTTAACACCACATTTGCCA+GGG + chr4_3:21172844-21172863 None:intergenic 35.0%
!! ATTTTAACACCACATTTGCC+AGG + chr4_3:21172845-21172864 None:intergenic 35.0%
!! GGTAGAAGTGCTAAACTTAT+AGG + chr4_3:21172870-21172889 None:intergenic 35.0%
! TTGTCATCATCTTAGTTTGG+AGG + chr4_3:21173107-21173126 None:intergenic 35.0%
AACATCTATATGCTCAGGAA+GGG + chr4_3:21173474-21173493 None:intergenic 35.0%
AAACATCTATATGCTCAGGA+AGG + chr4_3:21173475-21173494 None:intergenic 35.0%
AGAATAAAGGAATGGCTATG+AGG - chr4_3:21173674-21173693 Msa0634260:five_prime_UTR 35.0%
GAATAAAGGAATGGCTATGA+GGG - chr4_3:21173675-21173694 Msa0634260:five_prime_UTR 35.0%
TTCTTTCCCTAGAGAAACAA+TGG - chr4_3:21172541-21172560 Msa0634260:three_prime_UTR 35.0%
AAGCTTGAGAGTTACAATTG+TGG - chr4_3:21172565-21172584 Msa0634260:three_prime_UTR 35.0%
CCTTGAAGATAAGTAATGCA+TGG + chr4_3:21172671-21172690 None:intergenic 35.0%
CCATGCATTACTTATCTTCA+AGG - chr4_3:21172668-21172687 Msa0634260:intron 35.0%
TGCATTACTTATCTTCAAGG+AGG - chr4_3:21172671-21172690 Msa0634260:intron 35.0%
! GTTGTTATTCAAACGAGCAA+TGG + chr4_3:21172807-21172826 None:intergenic 35.0%
! TTTTAACACCACATTTGCCA+GGG + chr4_3:21172844-21172863 None:intergenic 35.0%
!! ATTTTAACACCACATTTGCC+AGG + chr4_3:21172845-21172864 None:intergenic 35.0%
!! GGTAGAAGTGCTAAACTTAT+AGG + chr4_3:21172870-21172889 None:intergenic 35.0%
! TTGTCATCATCTTAGTTTGG+AGG + chr4_3:21173107-21173126 None:intergenic 35.0%
AACATCTATATGCTCAGGAA+GGG + chr4_3:21173474-21173493 None:intergenic 35.0%
AAACATCTATATGCTCAGGA+AGG + chr4_3:21173475-21173494 None:intergenic 35.0%
AGAATAAAGGAATGGCTATG+AGG - chr4_3:21173674-21173693 Msa0634260:five_prime_UTR 35.0%
GAATAAAGGAATGGCTATGA+GGG - chr4_3:21173675-21173694 Msa0634260:five_prime_UTR 35.0%
ATATAGAAGATAAGGGAGGG+AGG + chr4_3:21172448-21172467 None:intergenic 40.0%
! GTATAAGTGTTGCAAGGTGA+TGG + chr4_3:21172474-21172493 None:intergenic 40.0%
! TGGTGAGTATAAGTGTTGCA+AGG + chr4_3:21172480-21172499 None:intergenic 40.0%
! AGCTTGCCATTGTTTCTCTA+GGG + chr4_3:21172550-21172569 None:intergenic 40.0%
! AAGCTTGCCATTGTTTCTCT+AGG + chr4_3:21172551-21172570 None:intergenic 40.0%
TGTGGTTGCAATTATGTGCA+TGG - chr4_3:21172583-21172602 Msa0634260:three_prime_UTR 40.0%
GCACTTCTACCAACTGTAAT+AGG - chr4_3:21172879-21172898 Msa0634260:intron 40.0%
GTAAATTCTACAGCTAGTGC+TGG + chr4_3:21173649-21173668 None:intergenic 40.0%
ATATAGAAGATAAGGGAGGG+AGG + chr4_3:21172448-21172467 None:intergenic 40.0%
! GTATAAGTGTTGCAAGGTGA+TGG + chr4_3:21172474-21172493 None:intergenic 40.0%
! TGGTGAGTATAAGTGTTGCA+AGG + chr4_3:21172480-21172499 None:intergenic 40.0%
! AGCTTGCCATTGTTTCTCTA+GGG + chr4_3:21172550-21172569 None:intergenic 40.0%
! AAGCTTGCCATTGTTTCTCT+AGG + chr4_3:21172551-21172570 None:intergenic 40.0%
TGTGGTTGCAATTATGTGCA+TGG - chr4_3:21172583-21172602 Msa0634260:three_prime_UTR 40.0%
GCACTTCTACCAACTGTAAT+AGG - chr4_3:21172879-21172898 Msa0634260:intron 40.0%
GTAAATTCTACAGCTAGTGC+TGG + chr4_3:21173649-21173668 None:intergenic 40.0%
!! AGATAAGGGAGGGAGGTATT+TGG + chr4_3:21172441-21172460 None:intergenic 45.0%
GGTTGCAATTATGTGCATGG+TGG - chr4_3:21172586-21172605 Msa0634260:three_prime_UTR 45.0%
TGCAATTATGTGCATGGTGG+TGG - chr4_3:21172589-21172608 Msa0634260:exon 45.0%
ATCAACTAGTTGACCGCATG+TGG + chr4_3:21172639-21172658 None:intergenic 45.0%
! ACTTATCTTCAAGGAGGTGC+TGG - chr4_3:21172677-21172696 Msa0634260:intron 45.0%
!! AACTGCTTGAAAAGTGCTGC+TGG - chr4_3:21172779-21172798 Msa0634260:intron 45.0%
ACTTGATGCTGCAATACAGC+AGG + chr4_3:21173559-21173578 None:intergenic 45.0%
AAACAAGAGGAAACTCGCAG+AGG + chr4_3:21173706-21173725 None:intergenic 45.0%
!! AGATAAGGGAGGGAGGTATT+TGG + chr4_3:21172441-21172460 None:intergenic 45.0%
GGTTGCAATTATGTGCATGG+TGG - chr4_3:21172586-21172605 Msa0634260:three_prime_UTR 45.0%
TGCAATTATGTGCATGGTGG+TGG - chr4_3:21172589-21172608 Msa0634260:exon 45.0%
ATCAACTAGTTGACCGCATG+TGG + chr4_3:21172639-21172658 None:intergenic 45.0%
! ACTTATCTTCAAGGAGGTGC+TGG - chr4_3:21172677-21172696 Msa0634260:intron 45.0%
!! AACTGCTTGAAAAGTGCTGC+TGG - chr4_3:21172779-21172798 Msa0634260:intron 45.0%
ACTTGATGCTGCAATACAGC+AGG + chr4_3:21173559-21173578 None:intergenic 45.0%
AAACAAGAGGAAACTCGCAG+AGG + chr4_3:21173706-21173725 None:intergenic 45.0%
GGTTAGTGCACCAATAGCAG+AGG - chr4_3:21172610-21172629 Msa0634260:intron 50.0%
GGTTAGTGCACCAATAGCAG+AGG - chr4_3:21172610-21172629 Msa0634260:intron 50.0%
CATGTGGCTGCCTCTGCTAT+TGG + chr4_3:21172623-21172642 None:intergenic 55.0%
ATAGCAGAGGCAGCCACATG+CGG - chr4_3:21172623-21172642 Msa0634260:intron 55.0%
CTTACTCCAGCACAGCACTG+TGG + chr4_3:21172710-21172729 None:intergenic 55.0%
CACAGTGCTGTGCTGGAGTA+AGG - chr4_3:21172708-21172727 Msa0634260:intron 55.0%
CAAGAGGAAACTCGCAGAGG+TGG + chr4_3:21173703-21173722 None:intergenic 55.0%
CATGTGGCTGCCTCTGCTAT+TGG + chr4_3:21172623-21172642 None:intergenic 55.0%
ATAGCAGAGGCAGCCACATG+CGG - chr4_3:21172623-21172642 Msa0634260:intron 55.0%
CTTACTCCAGCACAGCACTG+TGG + chr4_3:21172710-21172729 None:intergenic 55.0%
CACAGTGCTGTGCTGGAGTA+AGG - chr4_3:21172708-21172727 Msa0634260:intron 55.0%
CAAGAGGAAACTCGCAGAGG+TGG + chr4_3:21173703-21173722 None:intergenic 55.0%
CCAGCACAGCACTGTGGAGA+TGG + chr4_3:21172704-21172723 None:intergenic 60.0%
CCATCTCCACAGTGCTGTGC+TGG - chr4_3:21172701-21172720 Msa0634260:intron 60.0%
TTGCAAGCAGCCTTGCGAGC+CGG + chr4_3:21172761-21172780 None:intergenic 60.0%
AACCAAGCTGCTGCTCTCCC+TGG - chr4_3:21172824-21172843 Msa0634260:intron 60.0%
GCTGCTCTCCCTGGCAAATG+TGG - chr4_3:21172833-21172852 Msa0634260:intron 60.0%
CCAGCACAGCACTGTGGAGA+TGG + chr4_3:21172704-21172723 None:intergenic 60.0%
CCATCTCCACAGTGCTGTGC+TGG - chr4_3:21172701-21172720 Msa0634260:intron 60.0%
TTGCAAGCAGCCTTGCGAGC+CGG + chr4_3:21172761-21172780 None:intergenic 60.0%
AACCAAGCTGCTGCTCTCCC+TGG - chr4_3:21172824-21172843 Msa0634260:intron 60.0%
GCTGCTCTCCCTGGCAAATG+TGG - chr4_3:21172833-21172852 Msa0634260:intron 60.0%
CTTAACGCCGCCGCCAACAC+TGG - chr4_3:21172734-21172753 Msa0634260:intron 65.0%
TGCAAGCAGCCTTGCGAGCC+GGG + chr4_3:21172760-21172779 None:intergenic 65.0%
TGCCAGGGAGAGCAGCAGCT+TGG + chr4_3:21172829-21172848 None:intergenic 65.0%
CTTAACGCCGCCGCCAACAC+TGG - chr4_3:21172734-21172753 Msa0634260:intron 65.0%
TGCAAGCAGCCTTGCGAGCC+GGG + chr4_3:21172760-21172779 None:intergenic 65.0%
TGCCAGGGAGAGCAGCAGCT+TGG + chr4_3:21172829-21172848 None:intergenic 65.0%
CTTGCGAGCCGGGCCAGTGT+TGG + chr4_3:21172750-21172769 None:intergenic 70.0%
! CAACACTGGCCCGGCTCGCA+AGG - chr4_3:21172748-21172767 Msa0634260:intron 70.0%
CTTGCGAGCCGGGCCAGTGT+TGG + chr4_3:21172750-21172769 None:intergenic 70.0%
! CAACACTGGCCCGGCTCGCA+AGG - chr4_3:21172748-21172767 Msa0634260:intron 70.0%
!! AGCCGGGCCAGTGTTGGCGG+CGG + chr4_3:21172744-21172763 None:intergenic 75.0%
! GCGAGCCGGGCCAGTGTTGG+CGG + chr4_3:21172747-21172766 None:intergenic 75.0%
!! AGCCGGGCCAGTGTTGGCGG+CGG + chr4_3:21172744-21172763 None:intergenic 75.0%
! GCGAGCCGGGCCAGTGTTGG+CGG + chr4_3:21172747-21172766 None:intergenic 75.0%
! CGCCGCCGCCAACACTGGCC+CGG - chr4_3:21172739-21172758 Msa0634260:intron 80.0%
! CGCCGCCGCCAACACTGGCC+CGG - chr4_3:21172739-21172758 Msa0634260:intron 80.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 21172339 21173850 21172339 ID=Msa0634260;Name=Msa0634260
chr4_3 mRNA 21172339 21173850 21172339 ID=Msa0634260-mRNA-1;Parent=Msa0634260;Name=Msa0634260-mRNA-1;_AED=0.00;_eAED=0.00;_QI=221|1|1|1|1|1|2|267|117
chr4_3 exon 21172339 21172618 21172339 ID=Msa0634260-mRNA-1:exon:5532;Parent=Msa0634260-mRNA-1
chr4_3 exon 21173289 21173850 21173289 ID=Msa0634260-mRNA-1:exon:5531;Parent=Msa0634260-mRNA-1
chr4_3 five_prime_UTR 21173630 21173850 21173630 ID=Msa0634260-mRNA-1:five_prime_utr;Parent=Msa0634260-mRNA-1
chr4_3 CDS 21173289 21173629 21173289 ID=Msa0634260-mRNA-1:cds;Parent=Msa0634260-mRNA-1
chr4_3 CDS 21172606 21172618 21172606 ID=Msa0634260-mRNA-1:cds;Parent=Msa0634260-mRNA-1
chr4_3 three_prime_UTR 21172339 21172605 21172339 ID=Msa0634260-mRNA-1:three_prime_utr;Parent=Msa0634260-mRNA-1
Gene Sequence

>Msa0634260

ATGGCAAGCTTGAGAGTTACAATTGTGGTTGCAATTATGTGCATGGTGGTGGTTAGTGCACCAATAGCAGAGGCAGCCACATGCGGTCAACTAGTTGATAGCCTTATTCCATGCATTACTTATCTTCAAGGAGGTGCTGGTCCATCTCCACAGTGCTGTGCTGGAGTAAGGAAACTTAACGCCGCCGCCAACACTGGCCCGGCTCGCAAGGCTGCTTGCAACTGCTTGAAAAGTGCTGCTGGTACCATTGCTCGTTTGAATAACAACCAAGCTGCTGCTCTCCCTGGCAAATGTGGTGTTAAAATTCCCTATAAGTTTAGCACTTCTACCAACTGTAATAGCATCAAGTTCTAA

Protein sequence

>Msa0634260

MASLRVTIVVAIMCMVVVSAPIAEAATCGQLVDSLIPCITYLQGGAGPSPQCCAGVRKLNAAANTGPARKAACNCLKSAAGTIARLNNNQAAALPGKCGVKIPYKFSTSTNCNSIKF*