AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0541470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0541470 MtrunA17_Chr4g0010361 88.036 443 52 1 269 710 1 443 0.0 816
Msa0541470 MtrunA17_Chr4g0010361 85.811 148 20 1 1 147 1 148 1.48e-78 258
Msa0541470 MtrunA17_Chr4g0010361 70.213 141 28 3 109 248 293 420 3.38e-55 195
Msa0541470 MtrunA17_Chr7g0224131 87.557 442 52 1 269 710 1 439 0.0 815
Msa0541470 MtrunA17_Chr7g0224131 84.459 148 22 1 1 147 1 148 1.82e-76 252
Msa0541470 MtrunA17_Chr7g0224131 68.116 138 28 3 111 248 295 416 6.94e-51 183
Msa0541470 MtrunA17_Chr4g0010331 87.330 442 50 1 269 710 1 436 0.0 806
Msa0541470 MtrunA17_Chr4g0010331 90.541 148 13 1 1 147 1 148 5.44e-83 270
Msa0541470 MtrunA17_Chr4g0010331 68.571 140 31 2 109 248 287 413 8.63e-55 194
Msa0541470 MtrunA17_Chr4g0010311 83.484 442 73 0 269 710 1 442 0.0 777
Msa0541470 MtrunA17_Chr4g0010311 81.081 148 27 1 1 147 1 148 9.85e-72 240
Msa0541470 MtrunA17_Chr4g0010311 68.116 138 31 2 111 248 295 419 2.02e-53 190
Msa0541470 MtrunA17_Chr4g0010381 75.964 441 105 1 269 709 1 440 0.0 700
Msa0541470 MtrunA17_Chr4g0010381 77.027 148 33 1 1 147 1 148 2.61e-69 233
Msa0541470 MtrunA17_Chr4g0010381 51.515 165 64 3 84 248 270 418 3.14e-40 153
Msa0541470 MtrunA17_Chr4g0010351 83.422 374 62 0 269 642 1 374 0.0 657
Msa0541470 MtrunA17_Chr4g0010351 83.784 148 23 1 1 147 1 148 1.74e-75 248
Msa0541470 MtrunA17_Chr4g0010351 49.495 99 37 2 105 203 289 374 2.73e-21 96.7
Msa0541470 MtrunA17_Chr3g0125001 68.778 442 130 2 269 710 1 434 0.0 624
Msa0541470 MtrunA17_Chr3g0125001 74.324 148 37 1 1 147 1 148 1.65e-66 226
Msa0541470 MtrunA17_Chr3g0125001 48.905 137 55 2 113 248 289 411 1.46e-33 134
Msa0541470 MtrunA17_Chr3g0087221 67.038 449 141 2 269 710 1 449 0.0 613
Msa0541470 MtrunA17_Chr3g0087221 66.892 148 48 1 1 147 1 148 3.48e-60 209
Msa0541470 MtrunA17_Chr3g0087221 51.449 138 52 3 113 248 302 426 1.48e-33 134
Msa0541470 MtrunA17_Chr8g0359251 57.965 452 169 7 269 709 1 442 0.0 530
Msa0541470 MtrunA17_Chr8g0359251 58.599 157 55 3 1 147 1 157 5.80e-48 175
Msa0541470 MtrunA17_Chr8g0359251 46.053 152 65 4 100 248 283 420 3.03e-32 130
Msa0541470 MtrunA17_Chr8g0354371 58.940 453 164 6 269 710 1 442 0.0 527
Msa0541470 MtrunA17_Chr8g0354371 50.769 195 75 5 1 185 1 184 3.22e-50 181
Msa0541470 MtrunA17_Chr8g0354371 59.813 107 36 3 146 248 316 419 5.43e-30 123
Msa0541470 MtrunA17_Chr4g0053111 56.674 457 169 10 269 707 1 446 2.56e-167 488
Msa0541470 MtrunA17_Chr4g0053111 55.215 163 56 5 1 147 1 162 2.32e-44 165
Msa0541470 MtrunA17_Chr4g0053111 61.765 102 34 3 150 248 327 426 8.00e-29 120
Msa0541470 MtrunA17_Chr4g0053081 52.088 455 187 8 269 705 1 442 8.78e-158 463
Msa0541470 MtrunA17_Chr4g0053081 51.875 160 64 3 1 147 1 160 8.78e-45 166
Msa0541470 MtrunA17_Chr4g0053081 42.254 142 66 4 109 248 297 424 3.28e-25 109
Msa0541470 MtrunA17_Chr8g0374911 51.188 463 191 14 269 709 22 471 1.99e-144 430
Msa0541470 MtrunA17_Chr8g0374911 59.740 154 54 3 1 147 22 174 1.74e-49 180
Msa0541470 MtrunA17_Chr8g0374911 47.222 108 51 4 145 248 344 449 1.57e-19 92.4
Msa0541470 MtrunA17_Chr4g0053061 50.756 463 193 14 269 709 29 478 9.38e-144 429
Msa0541470 MtrunA17_Chr4g0053061 57.143 154 58 3 1 147 29 181 1.95e-47 174
Msa0541470 MtrunA17_Chr4g0053061 47.222 108 51 4 145 248 351 456 1.53e-19 92.4
Msa0541470 MtrunA17_Chr8g0374641 50.993 453 184 11 269 700 1 436 3.35e-143 426
Msa0541470 MtrunA17_Chr8g0374641 53.896 154 63 4 1 147 1 153 3.61e-42 159
Msa0541470 MtrunA17_Chr8g0374641 50.459 109 48 4 145 248 316 423 4.50e-25 108
Msa0541470 MtrunA17_Chr4g0053091 49.348 460 181 9 269 705 1 431 3.62e-143 426
Msa0541470 MtrunA17_Chr4g0053091 49.697 165 65 4 1 147 1 165 1.01e-39 152
Msa0541470 MtrunA17_Chr4g0053091 45.070 142 62 4 109 248 286 413 1.96e-28 119
Msa0541470 MtrunA17_Chr4g0010121 50.108 461 190 13 269 707 40 482 1.04e-141 424
Msa0541470 MtrunA17_Chr4g0010121 55.484 155 60 3 1 147 40 193 1.08e-46 172
Msa0541470 MtrunA17_Chr4g0010121 44.444 108 54 4 145 248 357 462 1.51e-17 86.3
Msa0541470 MtrunA17_Chr3g0134041 40.596 436 236 11 286 709 24 448 1.87e-93 297
Msa0541470 MtrunA17_Chr3g0134041 36.313 179 94 7 15 185 22 188 1.67e-19 92.0
Msa0541470 MtrunA17_Chr3g0134041 31.609 174 83 6 78 248 286 426 1.24e-14 77.0
Msa0541470 MtrunA17_Chr7g0224121 80.240 167 33 0 297 463 31 197 7.29e-93 287
Msa0541470 MtrunA17_Chr7g0224121 81.667 120 22 0 28 147 31 150 5.39e-61 203
Msa0541470 MtrunA17_Chr3g0134071 40.632 443 233 10 284 707 22 453 1.53e-91 294
Msa0541470 MtrunA17_Chr3g0134071 35.326 184 92 8 16 185 22 192 3.22e-18 88.6
Msa0541470 MtrunA17_Chr3g0134071 34.426 122 73 3 128 247 316 432 6.99e-13 71.6
Msa0541470 MtrunA17_Chr6g0456591 65.728 213 72 1 261 473 7 218 9.02e-91 283
Msa0541470 MtrunA17_Chr6g0456591 67.347 147 47 1 1 146 15 161 1.05e-59 201
Msa0541470 MtrunA17_Chr3g0134121 39.593 442 240 10 284 709 21 451 4.37e-88 285
Msa0541470 MtrunA17_Chr3g0134121 38.889 144 75 5 16 147 21 163 9.73e-17 84.0
Msa0541470 MtrunA17_Chr3g0134121 37.903 124 69 4 128 248 311 429 2.60e-12 69.7
Msa0541470 MtrunA17_Chr3g0134091 39.588 437 236 10 284 704 21 445 3.27e-86 279
Msa0541470 MtrunA17_Chr3g0134091 37.500 168 84 7 16 172 21 178 7.12e-17 84.0
Msa0541470 MtrunA17_Chr3g0134091 37.600 125 68 6 128 248 310 428 1.23e-11 67.4
Msa0541470 MtrunA17_Chr8g0353891 63.850 213 70 3 269 475 1 212 3.97e-86 270
Msa0541470 MtrunA17_Chr8g0353891 60.390 154 54 2 1 147 1 154 1.09e-53 184
Msa0541470 MtrunA17_Chr3g0134111 38.914 442 242 12 284 709 22 451 4.53e-84 273
Msa0541470 MtrunA17_Chr3g0134111 38.462 156 80 6 23 172 30 175 4.55e-17 84.7
Msa0541470 MtrunA17_Chr3g0134111 34.677 124 73 4 128 248 311 429 2.45e-11 66.6
Msa0541470 MtrunA17_Chr3g0134061 36.617 467 258 11 271 709 4 460 3.19e-79 261
Msa0541470 MtrunA17_Chr3g0134061 36.585 123 70 4 128 247 320 437 1.86e-12 70.1
Msa0541470 MtrunA17_Chr3g0134061 32.418 182 92 8 23 185 28 197 1.03e-11 67.8
Msa0541470 MtrunA17_Chr8g0353901 58.986 217 85 2 492 704 11 227 3.75e-78 250
Msa0541470 MtrunA17_Chr8g0353901 51.613 124 54 3 129 248 89 210 4.13e-29 116
Msa0541470 MtrunA17_Chr7g0224101 80.576 139 27 0 468 606 10 148 1.35e-74 237
Msa0541470 MtrunA17_Chr3g0134101 37.045 440 236 10 284 708 38 451 3.63e-74 247
Msa0541470 MtrunA17_Chr3g0134101 39.583 144 74 5 16 147 38 180 9.75e-18 86.7
Msa0541470 MtrunA17_Chr3g0134101 37.903 124 69 4 128 248 312 430 4.89e-13 72.0
Msa0541470 MtrunA17_Chr6g0463321 51.351 222 66 3 457 676 2 183 5.45e-64 210
Msa0541470 MtrunA17_Chr6g0463321 63.953 86 29 1 154 237 98 183 8.26e-29 113
Msa0541470 MtrunA17_Chr4g0005941 33.947 489 242 15 284 710 19 488 6.04e-60 209
Msa0541470 MtrunA17_Chr4g0005941 37.879 132 73 3 21 147 25 152 1.61e-11 67.4
Msa0541470 MtrunA17_Chr4g0005941 39.394 99 55 4 161 256 376 472 3.27e-11 66.2
Msa0541470 MtrunA17_Chr5g0436621 31.368 475 270 11 284 709 19 486 8.08e-57 201
Msa0541470 MtrunA17_Chr5g0436621 36.641 131 76 2 20 147 24 150 1.41e-11 67.4
Msa0541470 MtrunA17_Chr5g0436621 38.710 93 53 3 161 250 375 466 1.50e-11 67.4
Msa0541470 MtrunA17_Chr3g0113181 30.435 483 277 11 267 709 7 470 4.19e-56 198
Msa0541470 MtrunA17_Chr3g0113181 34.459 148 89 3 4 147 12 155 6.48e-12 68.6
Msa0541470 MtrunA17_Chr4g0053071 56.643 143 59 2 565 705 1 142 1.39e-48 167
Msa0541470 MtrunA17_Chr4g0053071 55.340 103 43 2 148 248 23 124 4.60e-29 113
Msa0541470 MtrunA17_Chr6g0463331 57.419 155 57 3 301 447 8 161 1.98e-47 165
Msa0541470 MtrunA17_Chr6g0463331 64.773 88 28 1 63 147 43 130 1.23e-29 115
Msa0541470 MtrunA17_Chr6g0467861 28.094 509 290 14 247 705 22 504 2.34e-45 169
Msa0541470 MtrunA17_Chr4g0053051 57.600 125 50 2 583 705 4 127 3.23e-41 146
Msa0541470 MtrunA17_Chr4g0053051 56.190 105 43 2 146 248 6 109 1.64e-28 110
Msa0541470 MtrunA17_Chr7g0224111 65.138 109 12 2 603 710 1 84 3.98e-37 133
Msa0541470 MtrunA17_Chr7g0224111 61.628 86 7 2 164 248 1 61 2.99e-23 94.4
Msa0541470 MtrunA17_Chr4g0001861 26.067 445 273 17 284 700 12 428 5.31e-30 123
Msa0541470 MtrunA17_Chr8g0371821 26.904 394 245 13 323 699 56 423 5.46e-30 123
Msa0541470 MtrunA17_Chr2g0334001 26.263 396 248 13 323 699 56 426 8.27e-28 117
Msa0541470 MtrunA17_Chr8g0386141 28.653 349 217 10 321 660 57 382 1.60e-25 110
Msa0541470 MtrunA17_Chr3g0132001 26.515 396 240 15 323 699 66 429 1.11e-22 101
Msa0541470 MtrunA17_Chr3g0087401 26.555 418 233 18 320 694 51 437 1.30e-22 101
Msa0541470 MtrunA17_Chr2g0311401 27.000 300 208 7 406 699 2 296 1.08e-21 96.3
Msa0541470 MtrunA17_Chr1g0165671 25.517 435 264 19 293 696 41 446 1.81e-20 95.1
Msa0541470 MtrunA17_Chr2g0323501 24.939 413 254 16 292 664 37 433 3.51e-18 88.2
Msa0541470 MtrunA17_Chr7g0224391 23.393 389 274 10 318 700 63 433 4.37e-18 87.4
Msa0541470 MtrunA17_Chr1g0191081 25.000 368 234 15 305 661 60 396 5.00e-18 87.4
Msa0541470 MtrunA17_Chr6g0454761 23.052 629 359 25 115 663 314 897 5.67e-18 89.0
Msa0541470 MtrunA17_Chr6g0454761 23.967 363 241 11 320 663 63 409 1.67e-12 71.2
Msa0541470 MtrunA17_Chr3g0134131 33.803 142 93 1 524 665 147 287 1.33e-17 84.7
Msa0541470 MtrunA17_Chr3g0134131 46.667 90 47 1 361 450 54 142 9.49e-17 82.0
Msa0541470 MtrunA17_Chr2g0323511 23.462 439 268 15 271 660 15 434 3.54e-17 85.1
Msa0541470 MtrunA17_Chr4g0054081 24.934 377 222 14 323 666 65 413 4.39e-17 84.7
Msa0541470 MtrunA17_Chr7g0252731 26.871 294 175 10 313 585 53 327 5.13e-17 84.3
Msa0541470 MtrunA17_Chr3g0123061 27.293 458 266 23 272 709 5 415 1.36e-16 82.8
Msa0541470 MtrunA17_Chr2g0323471 26.119 402 251 13 290 660 43 429 4.91e-16 81.6
Msa0541470 MtrunA17_Chr7g0219301 26.716 408 256 16 286 664 22 415 5.69e-16 82.4
Msa0541470 MtrunA17_Chr2g0323421 23.778 450 277 18 276 686 67 489 8.00e-16 80.9
Msa0541470 MtrunA17_Chr7g0219121 25.459 436 269 18 282 672 17 441 1.38e-15 80.1
Msa0541470 MtrunA17_Chr1g0165661 26.690 281 184 10 318 592 59 323 1.84e-15 79.7
Msa0541470 MtrunA17_Chr7g0219331 25.481 416 251 15 286 664 115 508 2.68e-15 79.3
Msa0541470 MtrunA17_Chr7g0219881 23.462 439 257 18 272 661 5 413 5.80e-15 78.2
Msa0541470 MtrunA17_Chr3g0124341 24.421 475 303 17 265 696 1 462 1.83e-14 76.6
Msa0541470 MtrunA17_Chr7g0273731 24.648 426 270 18 293 699 107 500 2.63e-14 76.3
Msa0541470 MtrunA17_Chr4g0027071 27.778 306 193 10 323 619 69 355 3.24e-14 75.9
Msa0541470 MtrunA17_Chr3g0141851 24.173 393 264 16 320 699 58 429 4.27e-14 75.5
Msa0541470 MtrunA17_Chr7g0253541 26.486 370 225 16 326 666 63 414 8.48e-14 74.3
Msa0541470 MtrunA17_Chr1g0165711 27.333 300 185 12 293 577 23 304 1.14e-13 73.6
Msa0541470 MtrunA17_Chr7g0273761 23.434 431 271 19 293 699 396 791 1.32e-13 74.7
Msa0541470 MtrunA17_Chr3g0083761 26.277 274 179 8 405 661 147 414 1.49e-13 73.6
Msa0541470 MtrunA17_Chr7g0219241 25.490 459 269 18 283 690 19 455 1.68e-13 73.6
Msa0541470 MtrunA17_Chr3g0113821 25.970 335 211 12 290 602 24 343 2.01e-13 73.2
Msa0541470 MtrunA17_Chr3g0097841 27.222 180 113 6 503 667 27 203 4.44e-13 69.7
Msa0541470 MtrunA17_Chr3g0106691 25.267 281 192 9 318 592 109 377 2.59e-12 69.7
Msa0541470 MtrunA17_Chr2g0306321 22.864 398 251 18 323 692 78 447 5.00e-12 68.9
Msa0541470 MtrunA17_Chr3g0106761 25.940 266 173 10 337 593 28 278 6.18e-12 68.2
Msa0541470 MtrunA17_Chr7g0253501 21.914 397 249 10 311 667 43 418 1.69e-11 67.0
Msa0541470 MtrunA17_Chr7g0219181 23.441 465 298 13 282 700 17 469 2.26e-11 66.6
Msa0541470 MtrunA17_Chr4g0004701 29.670 182 113 4 494 661 15 195 3.73e-11 63.9
Msa0541470 MtrunA17_Chr6g0470591 23.103 290 179 10 323 592 71 336 3.85e-11 65.9
Msa0541470 MtrunA17_Chr7g0253531 21.945 401 244 11 311 667 43 418 3.92e-11 65.9
Msa0541470 MtrunA17_Chr5g0442691 23.133 415 253 15 323 692 89 482 4.03e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0541470 AT5G67150.1 39.474 456 249 12 269 708 1 445 3.77e-96 305
Msa0541470 AT5G67150.1 42.038 157 81 4 1 147 1 157 1.76e-22 101
Msa0541470 AT5G67150.1 42.718 103 54 3 148 248 325 424 3.13e-17 85.5
Msa0541470 AT3G50300.1 41.364 440 224 15 269 690 1 424 2.03e-91 292
Msa0541470 AT3G50300.1 42.581 155 81 5 1 147 1 155 5.25e-24 106
Msa0541470 AT3G50300.1 44.444 108 53 4 148 250 318 423 1.75e-17 86.3
Msa0541470 AT3G50280.1 37.639 449 258 10 269 705 1 439 1.13e-87 282
Msa0541470 AT3G50280.1 38.312 154 88 4 1 147 1 154 6.53e-23 102
Msa0541470 AT3G50280.1 40.952 105 57 3 148 248 318 421 2.90e-15 79.3
Msa0541470 AT5G67160.1 37.838 444 245 10 274 709 12 432 3.67e-85 275
Msa0541470 AT5G67160.1 41.958 143 78 3 6 147 12 150 2.87e-24 106
Msa0541470 AT5G67160.1 44.860 107 48 4 146 248 311 410 1.72e-15 80.1
Msa0541470 AT5G42830.1 37.273 440 252 10 283 709 21 449 2.31e-83 271
Msa0541470 AT5G42830.1 41.429 140 73 6 15 147 21 158 2.43e-17 85.9
Msa0541470 AT5G42830.1 28.000 175 86 6 79 248 288 427 7.09e-11 65.5
Msa0541470 AT3G50270.1 37.389 452 257 11 274 709 7 448 1.25e-82 269
Msa0541470 AT3G50270.1 39.474 152 81 5 6 147 7 157 3.47e-19 91.7
Msa0541470 AT3G50270.1 44.643 112 56 4 143 250 319 428 2.61e-18 89.0
Msa0541470 AT5G38130.1 37.783 442 247 12 263 690 15 442 4.27e-81 266
Msa0541470 AT5G38130.1 40.385 156 83 6 1 147 21 175 1.05e-20 96.3
Msa0541470 AT5G38130.1 39.091 110 62 3 143 248 331 439 6.76e-14 75.1
Msa0541470 AT5G07850.1 38.739 444 245 12 283 710 22 454 6.12e-80 263
Msa0541470 AT5G07850.1 39.706 136 69 5 23 147 31 164 3.01e-13 73.2
Msa0541470 AT5G07860.1 37.473 459 247 12 272 708 8 448 6.50e-80 262
Msa0541470 AT5G07860.1 38.235 136 72 3 23 147 31 165 1.55e-14 77.0
Msa0541470 AT5G07860.1 36.364 110 64 4 142 248 321 427 4.55e-11 66.2
Msa0541470 AT5G07870.1 36.611 478 241 16 272 710 8 462 1.40e-71 240
Msa0541470 AT5G07870.1 37.654 162 80 7 4 147 8 166 4.79e-14 75.5
Msa0541470 AT2G39980.1 33.264 481 247 13 284 710 21 481 1.46e-66 228
Msa0541470 AT2G39980.1 36.667 150 85 4 3 147 7 151 1.07e-14 77.8
Msa0541470 AT2G39980.1 39.785 93 52 3 161 250 369 460 4.76e-13 72.4
Msa0541470 AT5G01210.1 34.615 416 213 11 334 709 73 469 1.65e-64 222
Msa0541470 AT5G01210.1 37.069 116 67 5 139 250 336 449 1.49e-12 70.9
Msa0541470 AT3G50280.2 37.618 319 183 6 393 705 1 309 3.83e-60 205
Msa0541470 AT3G50280.2 40.952 105 57 3 148 248 188 291 1.46e-15 79.0
Msa0541470 AT3G50290.1 41.241 274 148 6 390 658 4 269 1.46e-51 180
Msa0541470 AT5G23940.1 30.330 455 287 13 272 705 3 448 3.91e-49 180
Msa0541470 AT5G48930.1 26.933 401 271 11 309 699 39 427 4.69e-30 124
Msa0541470 AT3G48720.1 26.980 404 259 14 310 699 44 425 1.20e-23 104
Msa0541470 AT5G57840.1 26.651 439 270 18 279 690 9 422 8.35e-23 102
Msa0541470 AT5G41040.1 24.561 399 267 12 320 707 82 457 1.72e-21 98.6
Msa0541470 AT5G41040.2 24.561 399 267 12 320 707 66 441 1.77e-21 98.6
Msa0541470 AT3G03480.1 26.961 408 249 18 293 679 33 412 3.12e-20 94.7
Msa0541470 AT3G29670.1 22.921 445 299 14 271 690 8 433 1.26e-18 89.7
Msa0541470 AT5G63560.1 25.989 354 214 15 323 661 61 381 2.73e-18 88.6
Msa0541470 AT3G29590.1 25.597 461 277 17 272 696 8 438 1.17e-17 86.7
Msa0541470 AT1G65450.1 26.688 311 198 14 321 617 70 364 2.61e-17 85.9
Msa0541470 AT1G24430.1 25.481 416 262 17 309 710 45 426 3.36e-17 85.1
Msa0541470 AT5G23970.1 26.211 454 276 20 272 705 3 417 1.82e-16 82.8
Msa0541470 AT2G40230.1 24.494 445 304 16 269 700 1 426 6.70e-16 81.3
Msa0541470 AT3G29635.1 25.057 435 271 15 289 690 26 438 7.09e-16 81.3
Msa0541470 AT5G39090.1 25.979 281 164 11 403 660 140 399 1.07e-15 80.9
Msa0541470 AT5G16410.1 24.623 398 246 18 309 682 77 444 6.50e-15 78.6
Msa0541470 AT3G29680.1 23.919 393 257 11 320 690 59 431 1.51e-14 77.0
Msa0541470 AT1G27620.1 24.552 391 255 17 323 699 58 422 1.83e-14 76.6
Msa0541470 AT1G28680.1 23.881 402 255 15 283 663 18 389 2.38e-14 76.6
Msa0541470 AT3G30280.1 24.029 412 255 19 321 709 60 436 2.88e-14 76.3
Msa0541470 AT5G61160.1 23.116 398 257 16 288 661 31 403 1.18e-13 74.3
Msa0541470 AT1G28680.2 24.773 331 204 12 283 593 18 323 1.49e-13 73.6
Msa0541470 AT5G07080.1 25.538 325 202 13 285 590 28 331 1.97e-13 73.6
Msa0541470 AT2G25150.1 24.722 360 240 12 318 664 62 403 3.85e-13 72.8
Msa0541470 AT5G47980.1 24.088 411 255 17 322 709 60 436 1.28e-12 70.9
Msa0541470 AT1G03390.1 25.121 414 250 22 310 691 59 444 5.87e-12 68.9
Msa0541470 AT1G78990.1 25.141 354 230 16 321 661 65 396 2.60e-11 67.0
Msa0541470 AT5G39050.1 23.988 321 191 11 417 696 160 468 5.70e-11 65.9

Find 142 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCATGGTTTGATGTTTA+TGG 0.113342 4_1:-25335947 Msa0541470:CDS
TCTCCATGGTTTGATGTTTA+TGG 0.113342 4_1:-25340368 Msa0541470:CDS
CCATTACCAGAAAATTATTT+TGG 0.134239 4_1:-25336178 Msa0541470:CDS
ACTTGCTTCAACCAATAAAA+AGG 0.152814 4_1:-25336980 Msa0541470:CDS
TTAGCAAGCCTAACAAAATT+TGG 0.155332 4_1:+25336004 None:intergenic
TCAATTTGATCACTTGATTT+TGG 0.163360 4_1:+25341457 None:intergenic
ATTTCTTTCAACCAACAAAA+AGG 0.220292 4_1:-25341407 Msa0541470:CDS
ATAGTTTGATCACTTGATTT+TGG 0.265670 4_1:+25337033 None:intergenic
TTGTCTTCCACATGAGATTC+TGG 0.280245 4_1:-25335816 Msa0541470:CDS
AAAACTTTGTTTATCAAATA+GGG 0.285623 4_1:-25336395 Msa0541470:CDS
AACACTAGAGCGTTGGTTTC+CGG 0.290488 4_1:-25336509 Msa0541470:CDS
CGTAGTGGATATAAAGTAAA+TGG 0.299064 4_1:-25340311 Msa0541470:CDS
GATGTTTATGGTAATGATTT+TGG 0.308658 4_1:-25335935 Msa0541470:CDS
GATGTTTATGGTAATGATTT+TGG 0.308658 4_1:-25340356 Msa0541470:CDS
ATCAAGTGATCAAATTGATT+TGG 0.316940 4_1:-25341452 Msa0541470:CDS
TTCTTGTGGATCAAATTGTT+TGG 0.335214 4_1:+25336249 None:intergenic
AGTGGCTCAGCCGTTGGATT+TGG 0.349065 4_1:+25341353 None:intergenic
AGTGTCTCAGCCGTTGGATT+TGG 0.357834 4_1:+25336926 None:intergenic
AATGAAAGTTGGGGAGTTGT+TGG 0.379006 4_1:-25336128 Msa0541470:CDS
TGGATTTGGTTAGCTTCAAC+TGG 0.379348 4_1:+25336940 None:intergenic
AAATGCAATTATAAGTTGTA+TGG 0.380673 4_1:-25336155 Msa0541470:CDS
TATTTCTATTCTATTATTTG+AGG 0.381548 4_1:+25337113 None:intergenic
TGGATTTGGTCAGCTTCAAC+TGG 0.382433 4_1:+25341367 None:intergenic
GTGTTTGCCGGAATAGAAAA+AGG 0.382441 4_1:-25335857 Msa0541470:CDS
GTGTTTGCCGGAATAGAAAA+AGG 0.382441 4_1:-25340278 Msa0541470:CDS
ACCTCTCACGTTGCATTAGT+TGG 0.383610 4_1:+25335754 None:intergenic
AAACCATGGAGAACTGCTAA+TGG 0.390568 4_1:+25335958 None:intergenic
GTATGGTTAAAATGAAAGTT+GGG 0.393088 4_1:-25336138 Msa0541470:CDS
GAAACCAACGCTCTAGTGTT+GGG 0.395003 4_1:+25336512 None:intergenic
TGTATGGTTAAAATGAAAGT+TGG 0.395906 4_1:-25336139 Msa0541470:CDS
TGGTTGAAAGAAATAGAAAC+TGG 0.398490 4_1:+25341416 None:intergenic
CAAGAAATCCAAGCTTTGTT+GGG 0.403869 4_1:-25340433 Msa0541470:CDS
TATGGCATTTCATCAATTCA+TGG 0.407954 4_1:-25336579 Msa0541470:CDS
GGACTTATTACAGTGTTTGC+CGG 0.409780 4_1:-25340290 Msa0541470:CDS
GCCGGCAAGAGGTTGGAAAA+AGG 0.411903 4_1:+25341312 None:intergenic
CTAGTTGACGGTATGTTCAT+TGG 0.417115 4_1:-25336640 Msa0541470:CDS
GCCAGCAAGAGGTTGGAAAA+AGG 0.417931 4_1:+25336885 None:intergenic
CTTTGTTGGGCTTGCTAACA+TGG 0.419451 4_1:-25340420 Msa0541470:CDS
GGACTTGTTACAGTGTTTGC+CGG 0.422586 4_1:-25335869 Msa0541470:CDS
GAGGTACATAGGTGGGTTCT+AGG 0.423951 4_1:+25336749 None:intergenic
TTTAACCATGTTGTCGTTGA+CGG 0.436978 4_1:-25336610 Msa0541470:CDS
ATCAAATTGATTTGGCTCCA+TGG 0.447726 4_1:-25341444 Msa0541470:CDS
GACACAACATTCATGAATTG+AGG 0.451357 4_1:+25335776 None:intergenic
GTTGGGGAGTTGTTGGAGGA+AGG 0.453345 4_1:-25336121 Msa0541470:CDS
AATGAAAGTTGGGGAGCTGT+TGG 0.454825 4_1:-25340549 Msa0541470:intron
TTTAACTCATCTTTGGTGCT+CGG 0.456890 4_1:-25336281 Msa0541470:CDS
CGTAGTGGATATAAAGCAAA+TGG 0.458289 4_1:-25335890 Msa0541470:CDS
CTATTAAATACTTCTTCTTG+TGG 0.458740 4_1:+25336235 None:intergenic
AATACGATTTCCTTTCACTT+TGG 0.459710 4_1:-25336470 Msa0541470:CDS
GTATTTAATAGAGTCGTGAT+AGG 0.460162 4_1:-25336223 Msa0541470:CDS
ACCTGCATTGTTGCATATAA+CGG 0.463614 4_1:+25336819 None:intergenic
TCAAGAAATCCAAGCTTTGT+TGG 0.466546 4_1:-25340434 Msa0541470:CDS
GAGGTACATAGGTAGGTTCT+AGG 0.467173 4_1:+25341176 None:intergenic
CTGAGCCACTCTCTGTCCTC+TGG 0.472743 4_1:-25341340 Msa0541470:CDS
TGGTTGAAGCAAGTAGAAAT+CGG 0.475965 4_1:+25336989 None:intergenic
TTAGCAAGCCCAACAAAGCT+TGG 0.481005 4_1:+25340425 None:intergenic
GGGGAGTTGTTGGAGGAAGG+TGG 0.485977 4_1:-25336118 Msa0541470:CDS
TATCCACTACGAACTGCTAC+AGG 0.486958 4_1:+25335902 None:intergenic
TATCCACTACGAACTGCTAC+AGG 0.486958 4_1:+25340323 None:intergenic
AATAGAGTCGTGATAGGAGT+TGG 0.491643 4_1:-25336217 Msa0541470:CDS
CATGTGGAAGACAAACTTGA+AGG 0.493205 4_1:+25335825 None:intergenic
AGGCACATCAAAACCATTGT+TGG 0.495948 4_1:-25336680 Msa0541470:CDS
TGAAGAATCACTATGAGTCT+TGG 0.499390 4_1:-25336036 Msa0541470:CDS
GTTGGGGAGCTGTTGGAGGA+AGG 0.504563 4_1:-25340542 Msa0541470:CDS
AAACTATTGATTTGACTCCA+TGG 0.507614 4_1:-25337017 Msa0541470:CDS
TGAAGAATCACTACGAGTCT+TGG 0.507673 4_1:-25340457 Msa0541470:CDS
AGGCACATCAAAACCATTGT+TGG 0.509192 4_1:-25341107 Msa0541470:CDS
GAAAGTTGGGGAGTTGTTGG+AGG 0.511101 4_1:-25336125 Msa0541470:CDS
TCAAATTGATTTGGCTCCAT+GGG 0.514697 4_1:-25341443 Msa0541470:CDS
GAAAGTTGGGGAGCTGTTGG+AGG 0.514885 4_1:-25340546 Msa0541470:intron
AACTATTGATTTGACTCCAT+GGG 0.516810 4_1:-25337016 Msa0541470:CDS
CAACAAAAGAATCACTCTGA+TGG 0.518700 4_1:-25336445 Msa0541470:CDS
CACATCAAAACCATTGTTGG+CGG 0.519877 4_1:-25336677 Msa0541470:CDS
TGCTGGCCGTCTCAAAATAA+CGG 0.522868 4_1:-25336869 Msa0541470:CDS
ATGAATTGATGAAATGCCAT+AGG 0.530467 4_1:+25336581 None:intergenic
ACATGAGATTCTGGAGGCAA+TGG 0.532230 4_1:-25335807 Msa0541470:CDS
ATGGCATTTCATCAATTCAT+GGG 0.535218 4_1:-25336578 Msa0541470:CDS
ACAGAGAGTGGCTCAGCCGT+TGG 0.535281 4_1:+25341347 None:intergenic
TGAGACGGCCGGCAAGAGGT+TGG 0.536408 4_1:+25341305 None:intergenic
AAAGTGAAAGGAAATCGTAT+TGG 0.539286 4_1:+25336472 None:intergenic
ACAGAGAGTGTCTCAGCCGT+TGG 0.539317 4_1:+25336920 None:intergenic
GGAAACCAACGCTCTAGTGT+TGG 0.539690 4_1:+25336511 None:intergenic
TGAGACGGCCAGCAAGAGGT+TGG 0.540839 4_1:+25336878 None:intergenic
GAGGAAGGTGGACTTTGTAA+AGG 0.546587 4_1:-25336106 Msa0541470:CDS
GAGGAAGGTGGACTTTGTAA+AGG 0.546587 4_1:-25340527 Msa0541470:CDS
TGCCGGCCGTCTCAAAATAA+CGG 0.548175 4_1:-25341296 Msa0541470:CDS
TCCGTTATATGCAACAATGC+AGG 0.551070 4_1:-25336820 Msa0541470:CDS
ATTGGCCGTTGAACACCATC+CGG 0.551218 4_1:+25336490 None:intergenic
ATTGTTGGCGGTTCAAGTAA+CGG 0.553835 4_1:-25336665 Msa0541470:CDS
AACAAAAGAATCACTCTGAT+GGG 0.558688 4_1:-25336444 Msa0541470:CDS
ATCAACAATTGGAGGTACAT+AGG 0.559262 4_1:+25341165 None:intergenic
AATAGAAACTGGAGATCCCA+TGG 0.560139 4_1:+25341427 None:intergenic
AAACCATGGAGAACTGCTGA+TGG 0.560374 4_1:+25340379 None:intergenic
CAAGGCCAGAGGACAGAGAG+TGG 0.561146 4_1:+25341335 None:intergenic
GGTAATGGTGGAACTAACCT+TGG 0.563399 4_1:+25336193 None:intergenic
TCTCTCCACCGATACAATCA+AGG 0.566906 4_1:-25341482 Msa0541470:CDS
GGTTTCCGGATGGTGTTCAA+CGG 0.567162 4_1:-25336495 Msa0541470:CDS
ACACAACATTCATGAATTGA+GGG 0.567594 4_1:+25335777 None:intergenic
AAACCAACGCTCTAGTGTTG+GGG 0.573903 4_1:+25336513 None:intergenic
ATCGACAATTGGAGGTACAT+AGG 0.574863 4_1:+25336738 None:intergenic
GTGATTCTTCAACTTCTCAT+CGG 0.575796 4_1:+25340469 None:intergenic
TTTGGTTAGCTTCAACTGGA+TGG 0.576856 4_1:+25336944 None:intergenic
AGTAGAAATCGGAGATCCCA+TGG 0.579335 4_1:+25337000 None:intergenic
TCTCTCCACTGATACAATCA+AGG 0.580251 4_1:-25337058 Msa0541470:CDS
GGGGAGCTGTTGGAGGAAGG+TGG 0.582104 4_1:-25340539 Msa0541470:CDS
TATCCATCAGCAGTTCTCCA+TGG 0.583070 4_1:-25340382 Msa0541470:CDS
ACAATTGGAGGTACATAGGT+AGG 0.584159 4_1:+25341169 None:intergenic
GTGATTCTTCAACTTCTCAT+CGG 0.584387 4_1:+25336048 None:intergenic
TCGTTGACGGAAAGTCCCTA+TGG 0.585370 4_1:-25336597 Msa0541470:CDS
CAAGTAACGGAGCTAGTTGA+CGG 0.586570 4_1:-25341079 Msa0541470:intron
TTTGGTCAGCTTCAACTGGA+TGG 0.587605 4_1:+25341371 None:intergenic
TGGTGCCTTGATTGTATCAG+TGG 0.587630 4_1:+25337053 None:intergenic
GTTACTTGAACCGCCAACAA+TGG 0.593750 4_1:+25336667 None:intergenic
TATCCATTAGCAGTTCTCCA+TGG 0.597915 4_1:-25335961 Msa0541470:CDS
GTTACTTGAACTGCCAACAA+TGG 0.598824 4_1:+25341094 None:intergenic
TGGTGCCTTGATTGTATCGG+TGG 0.602029 4_1:+25341477 None:intergenic
TATGGTTAAAATGAAAGTTG+GGG 0.603920 4_1:-25336137 Msa0541470:CDS
TGAATTGATGAAATGCCATA+GGG 0.604499 4_1:+25336582 None:intergenic
AAGTATTCTCAGCTGCAGCA+TGG 0.612633 4_1:+25336785 None:intergenic
AAGTATTCTCAGCTGCAGCA+TGG 0.612633 4_1:+25341212 None:intergenic
CAAGTAACGGAACTAGTTGA+CGG 0.616630 4_1:-25336652 Msa0541470:CDS
ATCAGTGGAGAGAACTCGTA+CGG 0.619099 4_1:+25337068 None:intergenic
ATTGTTGGCAGTTCAAGTAA+CGG 0.622455 4_1:-25341092 Msa0541470:CDS
ACAATTGGAGGTACATAGGT+GGG 0.626645 4_1:+25336742 None:intergenic
AACAAAGTTAGAAGCTACGA+AGG 0.627886 4_1:-25336700 Msa0541470:CDS
ACTTTCCGTCAACGACAACA+TGG 0.629179 4_1:+25336605 None:intergenic
ATCGGTGGAGAGAACTCGTA+CGG 0.630409 4_1:+25341492 None:intergenic
CTAGAGCGTTGGTTTCCGGA+TGG 0.634274 4_1:-25336505 Msa0541470:CDS
AACCAACGCTCTAGTGTTGG+GGG 0.634809 4_1:+25336514 None:intergenic
GACAATTGGAGGTACATAGG+TGG 0.636969 4_1:+25336741 None:intergenic
TCTTCCACATGAGATTCTGG+AGG 0.645425 4_1:-25335813 Msa0541470:CDS
GCATATAACAGAACACGAGA+CGG 0.649984 4_1:+25341258 None:intergenic
TTACCATAAACATCAAACCA+TGG 0.659822 4_1:+25335944 None:intergenic
TTACCATAAACATCAAACCA+TGG 0.659822 4_1:+25340365 None:intergenic
TCTGTTATATGCAACAATGC+AGG 0.665996 4_1:-25341247 Msa0541470:CDS
AAGCCTGTAGCAGTTCGTAG+TGG 0.668630 4_1:-25335905 Msa0541470:CDS
AAGCCTGTAGCAGTTCGTAG+TGG 0.668630 4_1:-25340326 Msa0541470:CDS
TTGAAGCTGACCAAATCCAA+CGG 0.669951 4_1:-25341363 Msa0541470:CDS
TCGTGATAGGAGTTGGACCA+AGG 0.676348 4_1:-25336210 Msa0541470:CDS
TTGAAGCTAACCAAATCCAA+CGG 0.678953 4_1:-25336936 Msa0541470:CDS
ATTGCCTCCAGAATCTCATG+TGG 0.679505 4_1:+25335809 None:intergenic
ACTGAGGTTAGAAGCTACGA+AGG 0.680362 4_1:-25341127 Msa0541470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAATTAAAAAAAAATA+CGG - chr4_1:25338555-25338574 Msa0541470:intron 0.0%
!!! ATTTTTTTAAAAAAAAAATA+CGG - chr4_1:25338739-25338758 Msa0541470:intron 0.0%
!!! AAAAAAATATTAAAAAATTT+TGG + chr4_1:25339157-25339176 None:intergenic 0.0%
!! AAAAAAAATAAACATAAACT+GGG + chr4_1:25337376-25337395 None:intergenic 10.0%
!! TAAAAAAAATAAACATAAAC+TGG + chr4_1:25337377-25337396 None:intergenic 10.0%
!! TGATAAAATAATAATAATAG+TGG - chr4_1:25337620-25337639 Msa0541470:intron 10.0%
!! GAAAAAATATTAAAAAATTC+TGG - chr4_1:25338352-25338371 Msa0541470:intron 10.0%
!!! CATTTATTTAATTTAAAATC+TGG + chr4_1:25338422-25338441 None:intergenic 10.0%
!!! CATTTATTTAATTTAAAATC+TGG + chr4_1:25338422-25338441 None:intergenic 10.0%
!!! CAATTTTTAATTTTTATTCT+TGG + chr4_1:25339494-25339513 None:intergenic 10.0%
!!! AAAAACTTTGTTTATCAAAT+AGG - chr4_1:25336445-25336464 Msa0541470:CDS 15.0%
!!! AAAACTTTGTTTATCAAATA+GGG - chr4_1:25336446-25336465 Msa0541470:CDS 15.0%
!! AAAAAAATAAACATAAACTG+GGG + chr4_1:25337375-25337394 None:intergenic 15.0%
!!! CACTTTTAAGATATTTTTAT+TGG + chr4_1:25337650-25337669 None:intergenic 15.0%
!! AAATTAGCTAAGATAATTTA+CGG - chr4_1:25337713-25337732 Msa0541470:intron 15.0%
!! AAAATTATTAGTGGTAATTA+CGG - chr4_1:25337744-25337763 Msa0541470:intron 15.0%
!! GGTTTGATTAAAAAAAAAAA+TGG + chr4_1:25337966-25337985 None:intergenic 15.0%
!!! TAATTTAAAAGTTGATTTTC+TGG + chr4_1:25338664-25338683 None:intergenic 15.0%
!!! AAAATTTTCACAAAAATTCA+TGG + chr4_1:25339020-25339039 None:intergenic 15.0%
!!! AAATTGTAGTTTTTAAACTT+AGG - chr4_1:25339373-25339392 Msa0541470:intron 15.0%
!!! AATTGTAGTTTTTAAACTTA+GGG - chr4_1:25339374-25339393 Msa0541470:intron 15.0%
!!! TTTAATTTTTATTCTTGGTT+TGG + chr4_1:25339489-25339508 None:intergenic 15.0%
!!! TATCAATTGATATCTTTTTT+TGG + chr4_1:25339920-25339939 None:intergenic 15.0%
!!! TATTTCTATTCTATTATTTG+AGG + chr4_1:25340158-25340177 None:intergenic 15.0%
!!! AAAAACTTTGTTTATCAAAT+AGG - chr4_1:25336445-25336464 Msa0541470:CDS 15.0%
!!! AAAACTTTGTTTATCAAATA+GGG - chr4_1:25336446-25336465 Msa0541470:CDS 15.0%
!! TTAAAAATCAATGAAGAGAT+TGG - chr4_1:25336507-25336526 Msa0541470:CDS 20.0%
!! GTATTTAATAGATTCATGAT+AGG - chr4_1:25336616-25336635 Msa0541470:CDS 20.0%
!! CAATTATAAGTTGTATTGTA+TGG - chr4_1:25336692-25336711 Msa0541470:CDS 20.0%
!!! CGATTTTCTAAAATTATTAG+CGG + chr4_1:25337155-25337174 None:intergenic 20.0%
!!! TTTTTTTCTTTCCTTATCTA+TGG - chr4_1:25337328-25337347 Msa0541470:intron 20.0%
!! CTTATTATGAACATCAAATT+AGG - chr4_1:25337410-25337429 Msa0541470:intron 20.0%
!! AATTAGCTAAGATAATTTAC+GGG - chr4_1:25337714-25337733 Msa0541470:intron 20.0%
!! CTTGTAATTATGAGTTAATT+TGG + chr4_1:25337987-25338006 None:intergenic 20.0%
!! AAGTTGCAACATTAATTATT+AGG - chr4_1:25338079-25338098 Msa0541470:intron 20.0%
!!! AATTGTAGTTTTCAAACTTA+GGG + chr4_1:25338155-25338174 None:intergenic 20.0%
!!! AAATTGTAGTTTTCAAACTT+AGG + chr4_1:25338156-25338175 None:intergenic 20.0%
!!! AAGTTTGAAAACTACAATTT+TGG - chr4_1:25338156-25338175 Msa0541470:intron 20.0%
!! TAATTAATTAATTACACACG+TGG + chr4_1:25339272-25339291 None:intergenic 20.0%
!! TTGAAAATTTGACATTCTAA+AGG - chr4_1:25338856-25338875 Msa0541470:intron 20.0%
!! TAATTAATTAATTACACACG+TGG - chr4_1:25339272-25339291 Msa0541470:intron 20.0%
!!! ATTGTAGTTTTTAAACTTAG+GGG - chr4_1:25339375-25339394 Msa0541470:intron 20.0%
!! AATATTGCTCAAGAAAAAAA+TGG - chr4_1:25340174-25340193 Msa0541470:intron 20.0%
!! ATATTGCTCAAGAAAAAAAT+GGG - chr4_1:25340175-25340194 Msa0541470:intron 20.0%
!! TTAAAAATCAATGAAGAGAT+CGG - chr4_1:25336507-25336526 Msa0541470:CDS 20.0%
!! AAATGCAATTATAAGTTGTA+TGG - chr4_1:25336687-25336706 Msa0541470:CDS 20.0%
!!! TAAGAAATCCAAATTTTGTT+AGG - chr4_1:25341256-25341275 Msa0541470:CDS 20.0%
!! TCAATTTGATCACTTGATTT+TGG + chr4_1:25335814-25335833 None:intergenic 25.0%
! ATCAAGTGATCAAATTGATT+TGG - chr4_1:25335816-25335835 Msa0541470:CDS 25.0%
! ATTTCTTTCAACCAACAAAA+AGG - chr4_1:25335861-25335880 Msa0541470:CDS 25.0%
! TTTCTTTCAACCAACAAAAA+GGG - chr4_1:25335862-25335881 Msa0541470:CDS 25.0%
! AAAAATGAATCAACAATTGG+AGG + chr4_1:25336114-25336133 None:intergenic 25.0%
! CTATTAAATACTTCTTCTTG+CGG + chr4_1:25336607-25336626 None:intergenic 25.0%
!!! AAATAATATTCTGGTAATGG+TGG + chr4_1:25336664-25336683 None:intergenic 25.0%
! CCAAAATAATATTCTGGTAA+TGG + chr4_1:25336667-25336686 None:intergenic 25.0%
!! CCATTACCAGAATATTATTT+TGG - chr4_1:25336664-25336683 Msa0541470:CDS 25.0%
! GCATTTCCAAAATAATATTC+TGG + chr4_1:25336673-25336692 None:intergenic 25.0%
! TGTATGGTTAAAATGAAAGT+TGG - chr4_1:25336708-25336727 Msa0541470:CDS 25.0%
! GTATGGTTAAAATGAAAGTT+GGG - chr4_1:25336709-25336728 Msa0541470:CDS 25.0%
! TATGGTTAAAATGAAAGTTG+GGG - chr4_1:25336710-25336729 Msa0541470:CDS 25.0%
!!! GATGTTTATGGTAATGATTT+TGG - chr4_1:25336912-25336931 Msa0541470:CDS 25.0%
!!! TTTATGGTAATGATTTTGGA+TGG - chr4_1:25336916-25336935 Msa0541470:CDS 25.0%
!!! TTATGGTAATGATTTTGGAT+GGG - chr4_1:25336917-25336936 Msa0541470:CDS 25.0%
!! TATACTACCTTTTTCTATTC+CGG + chr4_1:25337000-25337019 None:intergenic 25.0%
! TTCAGTGTAATTATATGTGT+CGG - chr4_1:25337180-25337199 Msa0541470:intron 25.0%
! TTATGAACATCAAATTAGGT+CGG - chr4_1:25337414-25337433 Msa0541470:intron 25.0%
!! GACATCATATATTGATTAGT+TGG + chr4_1:25337555-25337574 None:intergenic 25.0%
! GCTTATAAGCTAACTTATAA+TGG - chr4_1:25337688-25337707 Msa0541470:intron 25.0%
!! GGATTTGGTAAAATTATTAG+TGG - chr4_1:25337735-25337754 Msa0541470:intron 25.0%
! TGTTTGGTAAAATTAGTAGT+TGG - chr4_1:25337767-25337786 Msa0541470:intron 25.0%
! AAGCTATAAGAATGAAACTT+TGG - chr4_1:25337938-25337957 Msa0541470:intron 25.0%
!! ATTGTAGTTTTCAAACTTAG+GGG + chr4_1:25338154-25338173 None:intergenic 25.0%
! GAAAATTCTGTAAAAGATTC+TGG + chr4_1:25338831-25338850 None:intergenic 25.0%
! AGAAATATGTACCAAATTTG+TGG + chr4_1:25338935-25338954 None:intergenic 25.0%
! TTGGTACATATTTCTTCTTT+AGG - chr4_1:25338940-25338959 Msa0541470:intron 25.0%
! TGGTACATATTTCTTCTTTA+GGG - chr4_1:25338941-25338960 Msa0541470:intron 25.0%
! TATTCGAAAAAGTAATGTCA+TGG + chr4_1:25338979-25338998 None:intergenic 25.0%
!!! TTTTTCGAATAAGTGATTCT+TGG - chr4_1:25338988-25339007 Msa0541470:intron 25.0%
!! TTGTAGTTTTTAAACTTAGG+GGG - chr4_1:25339376-25339395 Msa0541470:intron 25.0%
!!! TGCGCTTTTGTTTAATAATT+AGG + chr4_1:25339450-25339469 None:intergenic 25.0%
! TAAAAATTGTTACCGAAGAA+AGG - chr4_1:25339505-25339524 Msa0541470:intron 25.0%
! AAAAATTGTTACCGAAGAAA+GGG - chr4_1:25339506-25339525 Msa0541470:intron 25.0%
!!! CTTTTTTGAGAAATGATATC+TGG - chr4_1:25339783-25339802 Msa0541470:intron 25.0%
!! TATCATTTTATTGTCTCAGT+TGG - chr4_1:25339869-25339888 Msa0541470:intron 25.0%
!!! CAATTGATATCTTTTTTTGG+TGG + chr4_1:25339917-25339936 None:intergenic 25.0%
! TCTAGAAATTGTTATACACA+TGG - chr4_1:25339983-25340002 Msa0541470:intron 25.0%
!!! TTCAGCTTTATTTCAATGAT+TGG - chr4_1:25340032-25340051 Msa0541470:intron 25.0%
!!! TCAGCTTTATTTCAATGATT+GGG - chr4_1:25340033-25340052 Msa0541470:intron 25.0%
!!! TATTTGAGGTTGATTTTTTG+AGG + chr4_1:25340144-25340163 None:intergenic 25.0%
!! ATAGTTTGATCACTTGATTT+TGG + chr4_1:25340238-25340257 None:intergenic 25.0%
!! ATAAAGAAGACCCTTTTTAT+TGG + chr4_1:25340302-25340321 None:intergenic 25.0%
! ACAAAAAATGAATCGACAAT+TGG + chr4_1:25340544-25340563 None:intergenic 25.0%
!!! TTGTAGAGAAGATATTTTGA+TGG + chr4_1:25340962-25340981 None:intergenic 25.0%
! CTATTAAATACTTCTTCTTG+TGG + chr4_1:25336607-25336626 None:intergenic 25.0%
!!! AAATAATTTTCTGGTAATGG+TGG + chr4_1:25341090-25341109 None:intergenic 25.0%
!!! CCAAAATAATTTTCTGGTAA+TGG + chr4_1:25341093-25341112 None:intergenic 25.0%
!! CCATTACCAGAAAATTATTT+TGG - chr4_1:25341090-25341109 Msa0541470:CDS 25.0%
!! GCATTTCCAAAATAATTTTC+TGG + chr4_1:25341099-25341118 None:intergenic 25.0%
! TGTATGGTTAAAATGAAAGT+TGG - chr4_1:25336708-25336727 Msa0541470:CDS 25.0%
! GTATGGTTAAAATGAAAGTT+GGG - chr4_1:25336709-25336728 Msa0541470:CDS 25.0%
! TATGGTTAAAATGAAAGTTG+GGG - chr4_1:25336710-25336729 Msa0541470:CDS 25.0%
!!! GATGTTTATGGTAATGATTT+TGG - chr4_1:25336912-25336931 Msa0541470:CDS 25.0%
!!! TTTATGGTAATGATTTTGGA+TGG - chr4_1:25336916-25336935 Msa0541470:CDS 25.0%
!!! TTATGGTAATGATTTTGGAT+GGG - chr4_1:25336917-25336936 Msa0541470:CDS 25.0%
!! TATACTACCTTTTTCTATTC+CGG + chr4_1:25337000-25337019 None:intergenic 25.0%
TGGTTGAAAGAAATAGAAAC+TGG + chr4_1:25335855-25335874 None:intergenic 30.0%
! ATAAAGAAGACCCTTTTTGT+TGG + chr4_1:25335875-25335894 None:intergenic 30.0%
GCGAAAAATGAATCAACAAT+TGG + chr4_1:25336117-25336136 None:intergenic 30.0%
!! TTCATTTTTCGCTTTAACTG+AGG - chr4_1:25336125-25336144 Msa0541470:CDS 30.0%
AAAGTGAAAGGAAATCGTAT+TGG + chr4_1:25336372-25336391 None:intergenic 30.0%
AATACGATTTCCTTTCACTT+TGG - chr4_1:25336371-25336390 Msa0541470:CDS 30.0%
AACAAAAGAATCACTCTGAT+GGG - chr4_1:25336397-25336416 Msa0541470:CDS 30.0%
AATAGATTCATGATAGGAGT+TGG - chr4_1:25336622-25336641 Msa0541470:CDS 30.0%
TTACCATAAACATCAAACCA+TGG + chr4_1:25336906-25336925 None:intergenic 30.0%
!! TATGGTAATGATTTTGGATG+GGG - chr4_1:25336918-25336937 Msa0541470:CDS 30.0%
!! CGTAGTGGATATAAAGTAAA+TGG - chr4_1:25336957-25336976 Msa0541470:CDS 30.0%
ACACAACATTCATGAATTGA+GGG + chr4_1:25337073-25337092 None:intergenic 30.0%
CTAAGATAATTTACGGGATT+TGG - chr4_1:25337720-25337739 Msa0541470:intron 30.0%
!!! TGGATTTTTAGTAAGATGAC+AGG - chr4_1:25337787-25337806 Msa0541470:intron 30.0%
!!! GGATTTTTAGTAAGATGACA+GGG - chr4_1:25337788-25337807 Msa0541470:intron 30.0%
!! TCGCAACTTTTTGAAAGATA+GGG + chr4_1:25339405-25339424 None:intergenic 30.0%
!! ATCGCAACTTTTTGAAAGAT+AGG + chr4_1:25339404-25339423 None:intergenic 30.0%
! CTTTCAAAAAGTTGCGATTT+TGG - chr4_1:25338127-25338146 Msa0541470:intron 30.0%
! TTGTAGTTTTCAAACTTAGG+GGG + chr4_1:25338153-25338172 None:intergenic 30.0%
! TTTTAGCCCATTTGCATATT+TGG - chr4_1:25338188-25338207 Msa0541470:intron 30.0%
AAAGGACCAAATATGCAAAT+GGG + chr4_1:25338197-25338216 None:intergenic 30.0%
AAAAGGACCAAATATGCAAA+TGG + chr4_1:25339331-25339350 None:intergenic 30.0%
! ATTTGCATATTTGGTCCTTT+TGG - chr4_1:25338197-25338216 Msa0541470:intron 30.0%
AAAAGGACCAAATATGCAAA+GGG - chr4_1:25339331-25339350 Msa0541470:intron 30.0%
! TTTTAGTCCCTTTGCATATT+TGG + chr4_1:25339341-25339360 None:intergenic 30.0%
! CTTTCAAAAAGTTGCGATTT+TGG + chr4_1:25338127-25338146 None:intergenic 30.0%
!! ATCGCAACTTTTTGAAAGAT+AGG - chr4_1:25339404-25339423 Msa0541470:intron 30.0%
!! TCGCAACTTTTTGAAAGATA+GGG - chr4_1:25339405-25339424 Msa0541470:intron 30.0%
AATTTCTTCTTCCCTTTCTT+CGG + chr4_1:25339520-25339539 None:intergenic 30.0%
!!! TATCTTTTTTTGGTGGTAGA+CGG + chr4_1:25339910-25339929 None:intergenic 30.0%
ATTGGGTGATTTCAATCATT+GGG - chr4_1:25340050-25340069 Msa0541470:intron 30.0%
!!! ATATTTATTTTGCTGCGAAG+TGG + chr4_1:25340091-25340110 None:intergenic 30.0%
!! AAACTATTGATTTGACTCCA+TGG - chr4_1:25340251-25340270 Msa0541470:intron 30.0%
!! AACTATTGATTTGACTCCAT+GGG - chr4_1:25340252-25340271 Msa0541470:intron 30.0%
ACTTGCTTCAACCAATAAAA+AGG - chr4_1:25340288-25340307 Msa0541470:CDS 30.0%
CTTGCTTCAACCAATAAAAA+GGG - chr4_1:25340289-25340308 Msa0541470:CDS 30.0%
AAAAATGAATCGACAATTGG+AGG + chr4_1:25340541-25340560 None:intergenic 30.0%
TGAATTGATGAAATGCCATA+GGG + chr4_1:25340689-25340708 None:intergenic 30.0%
ATGAATTGATGAAATGCCAT+AGG + chr4_1:25340690-25340709 None:intergenic 30.0%
TATGGCATTTCATCAATTCA+TGG - chr4_1:25340689-25340708 Msa0541470:intron 30.0%
ATGGCATTTCATCAATTCAT+GGG - chr4_1:25340690-25340709 Msa0541470:intron 30.0%
AAAGTGAAAGGAAATCGTAT+TGG + chr4_1:25336372-25336391 None:intergenic 30.0%
AATACGATTTCCTTTCACTT+TGG - chr4_1:25336371-25336390 Msa0541470:CDS 30.0%
AACAAAAGAATCACTCTGAT+GGG - chr4_1:25336397-25336416 Msa0541470:CDS 30.0%
TTCTTGTGGATCAAATTGTT+TGG + chr4_1:25341022-25341041 None:intergenic 30.0%
GTATTTAATAGAGTCGTGAT+AGG - chr4_1:25341045-25341064 Msa0541470:intron 30.0%
TTAGCAAGCCTAACAAAATT+TGG + chr4_1:25341267-25341286 None:intergenic 30.0%
TTACCATAAACATCAAACCA+TGG + chr4_1:25336906-25336925 None:intergenic 30.0%
!! TATGGTAATGATTTTGGATG+GGG - chr4_1:25336918-25336937 Msa0541470:CDS 30.0%
ACACAACATTCATGAATTGA+GGG + chr4_1:25337073-25337092 None:intergenic 30.0%
!!! TTTTGGTGCCTTGATTGTAT+CGG + chr4_1:25335797-25335816 None:intergenic 35.0%
!! ATCAAATTGATTTGGCTCCA+TGG - chr4_1:25335824-25335843 Msa0541470:CDS 35.0%
!! TCAAATTGATTTGGCTCCAT+GGG - chr4_1:25335825-25335844 Msa0541470:CDS 35.0%
!!! TGTGTTCCGTTATTTTGAGA+CGG + chr4_1:25335981-25336000 None:intergenic 35.0%
TCTGTTATATGCAACAATGC+AGG - chr4_1:25336021-25336040 Msa0541470:CDS 35.0%
! ATCAACAATTGGAGGTACAT+AGG + chr4_1:25336106-25336125 None:intergenic 35.0%
ATTGTTGGCAGTTCAAGTAA+CGG - chr4_1:25336176-25336195 Msa0541470:CDS 35.0%
! CTAGTTGACGGTATTTTCAT+TGG - chr4_1:25336201-25336220 Msa0541470:CDS 35.0%
TTTAACCATGTTGTCGTTGA+CGG - chr4_1:25336231-25336250 Msa0541470:CDS 35.0%
TGAATTGATGAAATGCCACA+GGG + chr4_1:25336262-25336281 None:intergenic 35.0%
TGTGGCATTTCATCAATTCA+CGG - chr4_1:25336262-25336281 Msa0541470:CDS 35.0%
! TTTTGTTGCTCCAAAGTGAA+AGG + chr4_1:25336384-25336403 None:intergenic 35.0%
CAACAAAAGAATCACTCTGA+TGG - chr4_1:25336396-25336415 Msa0541470:CDS 35.0%
!! AAGCACTTTTAACTCACCTT+TGG - chr4_1:25336551-25336570 Msa0541470:CDS 35.0%
TTCTTGCGGATCAAATTGTT+TGG + chr4_1:25336593-25336612 None:intergenic 35.0%
GTGATTCTTCAACTTCTCAT+CGG + chr4_1:25336802-25336821 None:intergenic 35.0%
! TCAAGAAATCCAAGCTTTGT+TGG - chr4_1:25336834-25336853 Msa0541470:CDS 35.0%
!! CAAGAAATCCAAGCTTTGTT+GGG - chr4_1:25336835-25336854 Msa0541470:CDS 35.0%
TCTCCATGGTTTGATGTTTA+TGG - chr4_1:25336900-25336919 Msa0541470:CDS 35.0%
GACACAACATTCATGAATTG+AGG + chr4_1:25337074-25337093 None:intergenic 35.0%
CATAAATGTGCTTCATAGGT+TGG + chr4_1:25337096-25337115 None:intergenic 35.0%
CAACCTATGAAGCACATTTA+TGG - chr4_1:25337094-25337113 Msa0541470:CDS 35.0%
TGTCCATAAATGTGCTTCAT+AGG + chr4_1:25337100-25337119 None:intergenic 35.0%
AGTGTAATTATATGTGTCGG+TGG - chr4_1:25337183-25337202 Msa0541470:intron 35.0%
TGTTTGGAAACACTACAGTA+TGG - chr4_1:25337452-25337471 Msa0541470:intron 35.0%
! ACAGTATGGTGATGAACATA+CGG - chr4_1:25337466-25337485 Msa0541470:intron 35.0%
GCTTATAAGCTATTCGTCAT+AGG + chr4_1:25337678-25337697 None:intergenic 35.0%
TTAGTGGTAATTACGGTGTT+TGG - chr4_1:25337751-25337770 Msa0541470:intron 35.0%
! AAGATTTGTTCGCTACTTTG+AGG - chr4_1:25338004-25338023 Msa0541470:intron 35.0%
AAGCTCTTGATCATAGCATA+AGG - chr4_1:25338041-25338060 Msa0541470:intron 35.0%
!! GCAACTTTTTGAAAGATAGG+GGG + chr4_1:25339407-25339426 None:intergenic 35.0%
!! CGCAACTTTTTGAAAGATAG+GGG + chr4_1:25339406-25339425 None:intergenic 35.0%
!! TGCAAATGGGCTAAAACATA+GGG + chr4_1:25338184-25338203 None:intergenic 35.0%
!! ATGCAAATGGGCTAAAACAT+AGG + chr4_1:25338185-25338204 None:intergenic 35.0%
ATACAACTTGGCCACAAATT+TGG - chr4_1:25338921-25338940 Msa0541470:intron 35.0%
! CTTTGCATATTTGGTCCTTT+TGG + chr4_1:25339332-25339351 None:intergenic 35.0%
CAAAAGGACCAAATATGCAA+AGG - chr4_1:25339330-25339349 Msa0541470:intron 35.0%
ATGCAAAGGGACTAAAACAT+AGG - chr4_1:25339344-25339363 Msa0541470:intron 35.0%
TGCAAAGGGACTAAAACATA+GGG - chr4_1:25339345-25339364 Msa0541470:intron 35.0%
!! CGCAACTTTTTGAAAGATAG+GGG - chr4_1:25339406-25339425 Msa0541470:intron 35.0%
!! GCAACTTTTTGAAAGATAGG+GGG - chr4_1:25339407-25339426 Msa0541470:intron 35.0%
ATTAGGCTAAAGTGCAACTT+TGG + chr4_1:25338096-25338115 None:intergenic 35.0%
CGATGAGATCATGAACAAAT+TGG + chr4_1:25339643-25339662 None:intergenic 35.0%
!!! ATCTTTTTTTGGTGGTAGAC+GGG + chr4_1:25339909-25339928 None:intergenic 35.0%
GATTGGGTGATTTCAATCAT+TGG - chr4_1:25340049-25340068 Msa0541470:intron 35.0%
TGGTTGAAGCAAGTAGAAAT+CGG + chr4_1:25340282-25340301 None:intergenic 35.0%
TTGAAGCTAACCAAATCCAA+CGG - chr4_1:25340332-25340351 Msa0541470:CDS 35.0%
!!! AGTGTTCCGTTATTTTGAGA+CGG + chr4_1:25340408-25340427 None:intergenic 35.0%
ACCTGCATTGTTGCATATAA+CGG + chr4_1:25336025-25336044 None:intergenic 35.0%
AACAAAGTTAGAAGCTACGA+AGG - chr4_1:25340568-25340587 Msa0541470:intron 35.0%
TTTAACCATGTTGTCGTTGA+CGG - chr4_1:25336231-25336250 Msa0541470:CDS 35.0%
! TTTTGTTGCTCCAAAGTGAA+AGG + chr4_1:25336384-25336403 None:intergenic 35.0%
CAACAAAAGAATCACTCTGA+TGG - chr4_1:25336396-25336415 Msa0541470:CDS 35.0%
!! AAGCGCTTTTAACTCATCTT+TGG - chr4_1:25340980-25340999 Msa0541470:intron 35.0%
!! TTTAACTCATCTTTGGTGCT+CGG - chr4_1:25340987-25341006 Msa0541470:intron 35.0%
GTGATTCTTCAACTTCTCAT+CGG + chr4_1:25336802-25336821 None:intergenic 35.0%
TGAAGAATCACTATGAGTCT+TGG - chr4_1:25341232-25341251 Msa0541470:CDS 35.0%
!!! TTTTGTTAGGCTTGCTAACA+TGG - chr4_1:25341269-25341288 Msa0541470:CDS 35.0%
TCTCCATGGTTTGATGTTTA+TGG - chr4_1:25336900-25336919 Msa0541470:CDS 35.0%
!! CGTAGTGGATATAAAGCAAA+TGG - chr4_1:25341378-25341397 Msa0541470:CDS 35.0%
GACACAACATTCATGAATTG+AGG + chr4_1:25337074-25337093 None:intergenic 35.0%
AATAGAAACTGGAGATCCCA+TGG + chr4_1:25335844-25335863 None:intergenic 40.0%
TTGAAGCTGACCAAATCCAA+CGG - chr4_1:25335905-25335924 Msa0541470:CDS 40.0%
GCATATAACAGAACACGAGA+CGG + chr4_1:25336013-25336032 None:intergenic 40.0%
! ACAATTGGAGGTACATAGGT+AGG + chr4_1:25336102-25336121 None:intergenic 40.0%
AGGCACATCAAAACCATTGT+TGG - chr4_1:25336161-25336180 Msa0541470:CDS 40.0%
GTTACTTGAACTGCCAACAA+TGG + chr4_1:25336177-25336196 None:intergenic 40.0%
GTGAATTGATGAAATGCCAC+AGG + chr4_1:25336263-25336282 None:intergenic 40.0%
GTGGCATTTCATCAATTCAC+GGG - chr4_1:25336263-25336282 Msa0541470:CDS 40.0%
GGTTTCCAAATGGTGTTCAA+CGG - chr4_1:25336346-25336365 Msa0541470:CDS 40.0%
!! TTTAACTCACCTTTGGTGCT+CGG - chr4_1:25336558-25336577 Msa0541470:CDS 40.0%
! AATGGTGGAACTACTAACCT+TGG + chr4_1:25336649-25336668 None:intergenic 40.0%
TGAAGAATCACTACGAGTCT+TGG - chr4_1:25336811-25336830 Msa0541470:CDS 40.0%
GGACTTATTACAGTGTTTGC+CGG - chr4_1:25336978-25336997 Msa0541470:CDS 40.0%
GTGTTTGCCGGAATAGAAAA+AGG - chr4_1:25336990-25337009 Msa0541470:CDS 40.0%
CATGTGGAAGACAAACTTGA+AGG + chr4_1:25337025-25337044 None:intergenic 40.0%
TTGTCTTCCACATGAGATTC+TGG - chr4_1:25337031-25337050 Msa0541470:CDS 40.0%
TGAAGCACATTTATGGACAC+TGG - chr4_1:25337101-25337120 Msa0541470:CDS 40.0%
TAGTTGGACACTATGAAGCA+TGG + chr4_1:25337252-25337271 None:intergenic 40.0%
CTTTCCTTATCTATGGACAG+TGG - chr4_1:25337335-25337354 Msa0541470:intron 40.0%
CTTACCACTGTCCATAGATA+AGG + chr4_1:25337342-25337361 None:intergenic 40.0%
TGAACATCAAATTAGGTCGG+CGG - chr4_1:25337417-25337436 Msa0541470:intron 40.0%
!! GCAAATGGGCTAAAACATAG+GGG + chr4_1:25338183-25338202 None:intergenic 40.0%
CCTGGTCAAAATTGACCAAA+AGG + chr4_1:25339314-25339333 None:intergenic 40.0%
!! CCTTTTGGTCAATTTTGACC+AGG - chr4_1:25338212-25338231 Msa0541470:intron 40.0%
! TTTGACATTCTAAAGGCGCA+AGG - chr4_1:25338863-25338882 Msa0541470:intron 40.0%
!! CCTTTTGGTCAATTTTGACC+AGG + chr4_1:25338212-25338231 None:intergenic 40.0%
CCTGGTCAAAATTGACCAAA+AGG - chr4_1:25339314-25339333 Msa0541470:intron 40.0%
GCAAAGGGACTAAAACATAG+GGG - chr4_1:25339346-25339365 Msa0541470:intron 40.0%
!! AGGAGTATGATCTTTTCAGC+TGG - chr4_1:25339582-25339601 Msa0541470:intron 40.0%
! GGAGTATGATCTTTTCAGCT+GGG - chr4_1:25339583-25339602 Msa0541470:intron 40.0%
TACGTGGAGATAAGGAAATC+AGG - chr4_1:25339708-25339727 Msa0541470:intron 40.0%
AATCAGGTGGAGATAACGAT+AGG - chr4_1:25339724-25339743 Msa0541470:intron 40.0%
TCAATCATTGGGTGAATGTG+TGG - chr4_1:25340061-25340080 Msa0541470:intron 40.0%
TCTCTCCACTGATACAATCA+AGG - chr4_1:25340210-25340229 Msa0541470:intron 40.0%
!! TTTGGTTAGCTTCAACTGGA+TGG + chr4_1:25340327-25340346 None:intergenic 40.0%
!! TGGATTTGGTTAGCTTCAAC+TGG + chr4_1:25340331-25340350 None:intergenic 40.0%
TTGGAAAAAGGTAAGAGCAG+AGG + chr4_1:25340374-25340393 None:intergenic 40.0%
TCCGTTATATGCAACAATGC+AGG - chr4_1:25340448-25340467 Msa0541470:CDS 40.0%
! ACAATTGGAGGTACATAGGT+GGG + chr4_1:25336102-25336121 None:intergenic 40.0%
! ATCGACAATTGGAGGTACAT+AGG + chr4_1:25340533-25340552 None:intergenic 40.0%
AGGCACATCAAAACCATTGT+TGG - chr4_1:25336161-25336180 Msa0541470:CDS 40.0%
CACATCAAAACCATTGTTGG+CGG - chr4_1:25336164-25336183 Msa0541470:CDS 40.0%
ATTGTTGGCGGTTCAAGTAA+CGG - chr4_1:25340603-25340622 Msa0541470:intron 40.0%
! CAAGTAACGGAACTAGTTGA+CGG - chr4_1:25340616-25340635 Msa0541470:intron 40.0%
CTAGTTGACGGTATGTTCAT+TGG - chr4_1:25340628-25340647 Msa0541470:intron 40.0%
AATAGAGTCGTGATAGGAGT+TGG - chr4_1:25341051-25341070 Msa0541470:intron 40.0%
AATGAAAGTTGGGGAGTTGT+TGG - chr4_1:25341140-25341159 Msa0541470:CDS 40.0%
TATCCATTAGCAGTTCTCCA+TGG - chr4_1:25341307-25341326 Msa0541470:CDS 40.0%
AAACCATGGAGAACTGCTAA+TGG + chr4_1:25341313-25341332 None:intergenic 40.0%
GTGTTTGCCGGAATAGAAAA+AGG - chr4_1:25336990-25337009 Msa0541470:CDS 40.0%
CATGTGGAAGACAAACTTGA+AGG + chr4_1:25337025-25337044 None:intergenic 40.0%
TTGTCTTCCACATGAGATTC+TGG - chr4_1:25337031-25337050 Msa0541470:CDS 40.0%
TCTCTCCACCGATACAATCA+AGG - chr4_1:25335786-25335805 Msa0541470:CDS 45.0%
TTTGGTCAGCTTCAACTGGA+TGG + chr4_1:25335900-25335919 None:intergenic 45.0%
! TGGATTTGGTCAGCTTCAAC+TGG + chr4_1:25335904-25335923 None:intergenic 45.0%
CAAGAGGTTGGAAAAAGGCA+AGG + chr4_1:25335954-25335973 None:intergenic 45.0%
!!! TTCCGTTATTTTGAGACGGC+CGG + chr4_1:25335977-25335996 None:intergenic 45.0%
AAGTATTCTCAGCTGCAGCA+TGG + chr4_1:25336059-25336078 None:intergenic 45.0%
GAGGTACATAGGTAGGTTCT+AGG + chr4_1:25336095-25336114 None:intergenic 45.0%
ACTGAGGTTAGAAGCTACGA+AGG - chr4_1:25336141-25336160 Msa0541470:CDS 45.0%
! CAAGTAACGGAGCTAGTTGA+CGG - chr4_1:25336189-25336208 Msa0541470:CDS 45.0%
ACTTTCCGTCAACGACAACA+TGG + chr4_1:25336239-25336258 None:intergenic 45.0%
AAACCAACGCTCTAGTGTTG+GGG + chr4_1:25336331-25336350 None:intergenic 45.0%
GAAACCAACGCTCTAGTGTT+GGG + chr4_1:25336332-25336351 None:intergenic 45.0%
!! CTAGAGCGTTGGTTTCCAAA+TGG - chr4_1:25336336-25336355 Msa0541470:CDS 45.0%
ATTGGCCGTTGAACACCATT+TGG + chr4_1:25336354-25336373 None:intergenic 45.0%
TCATGATAGGAGTTGGACCA+AGG - chr4_1:25336629-25336648 Msa0541470:CDS 45.0%
AATGAAAGTTGGGGAGCTGT+TGG - chr4_1:25336719-25336738 Msa0541470:CDS 45.0%
! GAGGAAGGTGGACTTTGTAA+AGG - chr4_1:25336741-25336760 Msa0541470:CDS 45.0%
TTAGCAAGCCCAACAAAGCT+TGG + chr4_1:25336846-25336865 None:intergenic 45.0%
!! CTTTGTTGGGCTTGCTAACA+TGG - chr4_1:25336848-25336867 Msa0541470:CDS 45.0%
TATCCATCAGCAGTTCTCCA+TGG - chr4_1:25336886-25336905 Msa0541470:CDS 45.0%
AAACCATGGAGAACTGCTGA+TGG + chr4_1:25336892-25336911 None:intergenic 45.0%
TATCCACTACGAACTGCTAC+AGG + chr4_1:25336948-25336967 None:intergenic 45.0%
TCTTCCACATGAGATTCTGG+AGG - chr4_1:25337034-25337053 Msa0541470:CDS 45.0%
ATTGCCTCCAGAATCTCATG+TGG + chr4_1:25337041-25337060 None:intergenic 45.0%
! ACATGAGATTCTGGAGGCAA+TGG - chr4_1:25337040-25337059 Msa0541470:CDS 45.0%
TATGAAGCATGGACACTCCT+CGG + chr4_1:25337241-25337260 None:intergenic 45.0%
! GTATGGTGATGAACATACGG+TGG - chr4_1:25337469-25337488 Msa0541470:intron 45.0%
ACATACGGTGGTCTAACTCT+TGG - chr4_1:25337481-25337500 Msa0541470:intron 45.0%
CATACGGTGGTCTAACTCTT+GGG - chr4_1:25337482-25337501 Msa0541470:intron 45.0%
ACACCGACGAGAATACAACT+TGG - chr4_1:25338909-25338928 Msa0541470:intron 45.0%
TGGCCAAGTTGTATTCTCGT+CGG + chr4_1:25338915-25338934 None:intergenic 45.0%
TAGCGTAAGTTAACTCACGC+AGG - chr4_1:25339562-25339581 Msa0541470:intron 45.0%
AAACAACATGCGACTGTACG+TGG - chr4_1:25339692-25339711 Msa0541470:intron 45.0%
GTGGAGATAAGGAAATCAGG+TGG - chr4_1:25339711-25339730 Msa0541470:intron 45.0%
ATCAGTGGAGAGAACTCGTA+CGG + chr4_1:25340203-25340222 None:intergenic 45.0%
TGGTGCCTTGATTGTATCAG+TGG + chr4_1:25340218-25340237 None:intergenic 45.0%
AGTAGAAATCGGAGATCCCA+TGG + chr4_1:25340271-25340290 None:intergenic 45.0%
! ACCTTTTTCCAACCTCTTGC+TGG - chr4_1:25340382-25340401 Msa0541470:CDS 45.0%
TGCTGGCCGTCTCAAAATAA+CGG - chr4_1:25340399-25340418 Msa0541470:CDS 45.0%
AAGTATTCTCAGCTGCAGCA+TGG + chr4_1:25336059-25336078 None:intergenic 45.0%
! GACAATTGGAGGTACATAGG+TGG + chr4_1:25340530-25340549 None:intergenic 45.0%
GTTACTTGAACCGCCAACAA+TGG + chr4_1:25340604-25340623 None:intergenic 45.0%
ACTTTCCGTCAACGACAACA+TGG + chr4_1:25336239-25336258 None:intergenic 45.0%
! GGTAATGGTGGAACTAACCT+TGG + chr4_1:25341078-25341097 None:intergenic 45.0%
! GAGGAAGGTGGACTTTGTAA+AGG - chr4_1:25336741-25336760 Msa0541470:CDS 45.0%
TATCCACTACGAACTGCTAC+AGG + chr4_1:25336948-25336967 None:intergenic 45.0%
!! GGACTTGTTACAGTGTTTGC+CGG - chr4_1:25341399-25341418 Msa0541470:CDS 45.0%
TCTTCCACATGAGATTCTGG+AGG - chr4_1:25337034-25337053 Msa0541470:CDS 45.0%
ATTGCCTCCAGAATCTCATG+TGG + chr4_1:25337041-25337060 None:intergenic 45.0%
! ACATGAGATTCTGGAGGCAA+TGG - chr4_1:25337040-25337059 Msa0541470:CDS 45.0%
!! AAAAAAATAATAAAAAATTC+TGG - chr4_1:25338323-25338342 Msa0541470:intron 5.0%
!!! TAATTTAAAAATTGATTTTT+TGG + chr4_1:25338294-25338313 None:intergenic 5.0%
!!! TTTTAATTTTTTAAAAAATC+TGG + chr4_1:25338548-25338567 None:intergenic 5.0%
!!! ATTTTTTTTTTAAAAAAATC+TGG + chr4_1:25338738-25338757 None:intergenic 5.0%
!! TAAAAAATATTAAAAAATTC+TGG + chr4_1:25339196-25339215 None:intergenic 5.0%
!!! TTTATAGTTTTTTTTTTTAA+AGG - chr4_1:25339942-25339961 Msa0541470:intron 5.0%
ATCGGTGGAGAGAACTCGTA+CGG + chr4_1:25335779-25335798 None:intergenic 50.0%
TGGTGCCTTGATTGTATCGG+TGG + chr4_1:25335794-25335813 None:intergenic 50.0%
TTGGAAAAAGGCAAGGCCAG+AGG + chr4_1:25335947-25335966 None:intergenic 50.0%
! GCCTTTTTCCAACCTCTTGC+CGG - chr4_1:25335955-25335974 Msa0541470:CDS 50.0%
TGCCGGCCGTCTCAAAATAA+CGG - chr4_1:25335972-25335991 Msa0541470:CDS 50.0%
! AACCAACGCTCTAGTGTTGG+GGG + chr4_1:25336330-25336349 None:intergenic 50.0%
GGAAACCAACGCTCTAGTGT+TGG + chr4_1:25336333-25336352 None:intergenic 50.0%
AAGCCTGTAGCAGTTCGTAG+TGG - chr4_1:25336942-25336961 Msa0541470:CDS 50.0%
TATGGACACTGGACACGACA+CGG - chr4_1:25337112-25337131 Msa0541470:CDS 50.0%
GATGAACCGTATTCCGGTGT+CGG + chr4_1:25337219-25337238 None:intergenic 50.0%
TCCTCGGATGAACCGTATTC+CGG + chr4_1:25337225-25337244 None:intergenic 50.0%
GTCCAACTATGCAACGTGAG+AGG - chr4_1:25337263-25337282 Msa0541470:intron 50.0%
CACCTCTCACGTTGCATAGT+TGG + chr4_1:25337268-25337287 None:intergenic 50.0%
GCGGCGTCTAACATCATGTT+TGG - chr4_1:25337436-25337455 Msa0541470:intron 50.0%
TGGGAATGAGCGAAAACTGC+TGG - chr4_1:25339602-25339621 Msa0541470:intron 50.0%
GGGAATGAGCGAAAACTGCT+GGG - chr4_1:25339603-25339622 Msa0541470:intron 50.0%
TGCGACTGTACGTGGAGATA+AGG - chr4_1:25339700-25339719 Msa0541470:intron 50.0%
CAGGTGGAGATAACGATAGG+TGG - chr4_1:25339727-25339746 Msa0541470:intron 50.0%
AGTGTCTCAGCCGTTGGATT+TGG + chr4_1:25340345-25340364 None:intergenic 50.0%
GCCAGCAAGAGGTTGGAAAA+AGG + chr4_1:25340386-25340405 None:intergenic 50.0%
!!! ATTTTGAGACGGCCAGCAAG+AGG + chr4_1:25340397-25340416 None:intergenic 50.0%
! GAGGTACATAGGTGGGTTCT+AGG + chr4_1:25340522-25340541 None:intergenic 50.0%
TCGTTGACGGAAAGTCCCTA+TGG - chr4_1:25340671-25340690 Msa0541470:intron 50.0%
GGTTTCCGGATGGTGTTCAA+CGG - chr4_1:25340773-25340792 Msa0541470:intron 50.0%
ATTGGCCGTTGAACACCATC+CGG + chr4_1:25340781-25340800 None:intergenic 50.0%
TCGTGATAGGAGTTGGACCA+AGG - chr4_1:25341058-25341077 Msa0541470:intron 50.0%
GAAAGTTGGGGAGTTGTTGG+AGG - chr4_1:25341143-25341162 Msa0541470:CDS 50.0%
AAGCCTGTAGCAGTTCGTAG+TGG - chr4_1:25336942-25336961 Msa0541470:CDS 50.0%
AGTGGCTCAGCCGTTGGATT+TGG + chr4_1:25335918-25335937 None:intergenic 55.0%
GCCGGCAAGAGGTTGGAAAA+AGG + chr4_1:25335959-25335978 None:intergenic 55.0%
!!! ATTTTGAGACGGCCGGCAAG+AGG + chr4_1:25335970-25335989 None:intergenic 55.0%
TCGTTGACGGAAAGTCCCTG+TGG - chr4_1:25336244-25336263 Msa0541470:CDS 55.0%
AACCCCCAACACTAGAGCGT+TGG - chr4_1:25336325-25336344 Msa0541470:CDS 55.0%
AACGCATCACCGAGCACCAA+AGG + chr4_1:25336570-25336589 None:intergenic 55.0%
GAAAGTTGGGGAGCTGTTGG+AGG - chr4_1:25336722-25336741 Msa0541470:CDS 55.0%
TCGTGTCCGACACCGGAATA+CGG - chr4_1:25337210-25337229 Msa0541470:intron 55.0%
ACCGGAATACGGTTCATCCG+AGG - chr4_1:25337221-25337240 Msa0541470:intron 55.0%
TGACCAGGTCAACGCATACG+TGG - chr4_1:25338227-25338246 Msa0541470:intron 55.0%
! ATGCCACGTATGCGTTGACC+TGG + chr4_1:25339296-25339315 None:intergenic 55.0%
! ATGCCACGTATGCGTTGACC+TGG - chr4_1:25339296-25339315 Msa0541470:intron 55.0%
TGACCAGGTCAACGCATACG+TGG + chr4_1:25338227-25338246 None:intergenic 55.0%
!! ACAGAGAGTGTCTCAGCCGT+TGG + chr4_1:25340351-25340370 None:intergenic 55.0%
GTTGGGGAGTTGTTGGAGGA+AGG - chr4_1:25341147-25341166 Msa0541470:CDS 55.0%
ACAGAGAGTGGCTCAGCCGT+TGG + chr4_1:25335924-25335943 None:intergenic 60.0%
CTGAGCCACTCTCTGTCCTC+TGG - chr4_1:25335928-25335947 Msa0541470:CDS 60.0%
CAAGGCCAGAGGACAGAGAG+TGG + chr4_1:25335936-25335955 None:intergenic 60.0%
GTTGGGGAGCTGTTGGAGGA+AGG - chr4_1:25336726-25336745 Msa0541470:CDS 60.0%
TGAGACGGCCAGCAAGAGGT+TGG + chr4_1:25340393-25340412 None:intergenic 60.0%
GGGGAGTTGTTGGAGGAAGG+TGG - chr4_1:25341150-25341169 Msa0541470:CDS 60.0%
TGAGACGGCCGGCAAGAGGT+TGG + chr4_1:25335966-25335985 None:intergenic 65.0%
GGGGAGCTGTTGGAGGAAGG+TGG - chr4_1:25336729-25336748 Msa0541470:CDS 65.0%
TGGCGTGTCGTGTCCGACAC+CGG - chr4_1:25337203-25337222 Msa0541470:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 25335769 25341521 25335769 ID=Msa0541470;Name=Msa0541470
chr4_1 mRNA 25335769 25341521 25335769 ID=Msa0541470-mRNA-1;Parent=Msa0541470;Name=Msa0541470-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|1|0|0|3|0|710
chr4_1 exon 25341080 25341521 25341080 ID=Msa0541470-mRNA-1:exon:6819;Parent=Msa0541470-mRNA-1
chr4_1 exon 25340262 25340563 25340262 ID=Msa0541470-mRNA-1:exon:6818;Parent=Msa0541470-mRNA-1
chr4_1 exon 25335769 25337157 25335769 ID=Msa0541470-mRNA-1:exon:6817;Parent=Msa0541470-mRNA-1
chr4_1 CDS 25341080 25341521 25341080 ID=Msa0541470-mRNA-1:cds;Parent=Msa0541470-mRNA-1
chr4_1 CDS 25340262 25340563 25340262 ID=Msa0541470-mRNA-1:cds;Parent=Msa0541470-mRNA-1
chr4_1 CDS 25335769 25337157 25335769 ID=Msa0541470-mRNA-1:cds;Parent=Msa0541470-mRNA-1
Gene Sequence

>Msa0541470

ATGGGAACCGTACGAGTTCTCTCCACCGATACAATCAAGGCACCAAAATCAAGTGATCAAATTGATTTGGCTCCATGGGATCTCCAGTTTCTATTTCTTTCAACCAACAAAAAGGGTCTTCTTTATCACCATCCAGTTGAAGCTGACCAAATCCAACGGCTGAGCCACTCTCTGTCCTCTGGCCTTGCCTTTTTCCAACCTCTTGCCGGCCGTCTCAAAATAACGGAACACAATGACAACACCGTCTCGTGTTCTGTTATATGCAACAATGCAGGTGTTCTCTTTATCCATGCTGCAGCTGAGAATACTTGTGTTGCTGACATCCTAGAACCTACCTATGTACCTCCAATTGTTGATTCATTTTTCGCTTTAACTGAGGTTAGAAGCTACGAAGGCACATCAAAACCATTGTTGGCAGTTCAAGTAACGGAGCTAGTTGACGTTGGGGAGCTGTTGGAGGAAGGTGGACTTTGTAAAGGTGCTTGCGAGATGAACAAGTTAATTGCTTCGCACACCGATGAGAAGTTGAAGAATCACTACGAGTCTTGGTCAAGAAATCCAAGCTTTGTTGGGCTTGCTAACATGGTAAAATATAATTTCATATCCATCAGCAGTTCTCCATGGTTTGATGTTTATGGTAATGATTTTGGATGGGGAAAGCCTGTAGCAGTTCGTAGTGGATATAAAGTAAATGGACTTATTACAGTGTTTGCCGGAATAGAAAAAGGTAGTATAGACCTTCAACAAATCAACCTCAAAAAATCAACCTCAAATAATAGAATAGAAATATTGCTCAAGAAAAAAATGGGAACCGTACGAGTTCTCTCCACTGATACAATCAAGGCACCAAAATCAAGTGATCAAACTATTGATTTGACTCCATGGGATCTCCGATTTCTACTTGCTTCAACCAATAAAAAGGGTCTTCTTTATCACCATCCAGTTGAAGCTAACCAAATCCAACGGCTGAGACACTCTCTGTCCTCTGCTCTTACCTTTTTCCAACCTCTTGCTGGCCGTCTCAAAATAACGGAACACTCAGACAAGACTGTCTCGTGTTCCGTTATATGCAACAATGCAGGTGTACTCTTTATCCATGCTGCAGCTGAGAATACTTGTGTTGCTGACATCCTAGAACCCACCTATGTACCTCCAATTGTCGATTCATTTTTTGTTTTAAACAAAGTTAGAAGCTACGAAGGCACATCAAAACCATTGTTGGCGGTTCAAGTAACGGAACTAGTTGACGGTATGTTCATTGGTTGCTCATTTAACCATGTTGTCGTTGACGGAAAGTCCCTATGGCATTTCATCAATTCATGGGCTGAAATTTCACGTAGTTGTTGTCATCATCAAATATCTAAACCCCCAACACTAGAGCGTTGGTTTCCGGATGGTGTTCAACGGCCAATACGATTTCCTTTCACTTTGGAGCAACAAAAGAATCACTCTGATGGGTTGAGTTTTTCGTCGTTTGATGATGAAAAACTTTGTTTATCAAATAGGGTATTTCATTTCACAAAAGAGAAAATTGTGCAGCTGAAATTAAAAATCAATGAAGAGATCGGTACCATCAAAATATCTTCTCTACAAGCGCTTTTAACTCATCTTTGGTGCTCGGTGATGTGTTCCAAACAATTTGATCCACAAGAAGAAGTATTTAATAGAGTCGTGATAGGAGTTGGACCAAGGTTAGTTCCACCATTACCAGAAAATTATTTTGGAAATGCAATTATAAGTTGTATGGTTAAAATGAAAGTTGGGGAGTTGTTGGAGGAAGGTGGACTTTGTAAAGGTGCTTGCGAGATGAACAAGTTAATTGCTTCACACACCGATGAGAAGTTGAAGAATCACTATGAGTCTTGGTTAAGAAATCCAAATTTTGTTAGGCTTGCTAACATGGTAAAAAATAATTTCATATCCATTAGCAGTTCTCCATGGTTTGATGTTTATGGTAATGATTTTGGATGGGGAAAGCCTGTAGCAGTTCGTAGTGGATATAAAGCAAATGGACTTGTTACAGTGTTTGCCGGAATAGAAAAAGGTAGTATAGACCTTCAAGTTTGTCTTCCACATGAGATTCTGGAGGCAATGGAAAATGACCCTCAATTCATGAATGTTGTGTCCAACTAA
Protein sequence

>Msa0541470

MGTVRVLSTDTIKAPKSSDQIDLAPWDLQFLFLSTNKKGLLYHHPVEADQIQRLSHSLSSGLAFFQPLAGRLKITEHNDNTVSCSVICNNAGVLFIHAAAENTCVADILEPTYVPPIVDSFFALTEVRSYEGTSKPLLAVQVTELVDVGELLEEGGLCKGACEMNKLIASHTDEKLKNHYESWSRNPSFVGLANMVKYNFISISSSPWFDVYGNDFGWGKPVAVRSGYKVNGLITVFAGIEKGSIDLQQINLKKSTSNNRIEILLKKKMGTVRVLSTDTIKAPKSSDQTIDLTPWDLRFLLASTNKKGLLYHHPVEANQIQRLRHSLSSALTFFQPLAGRLKITEHSDKTVSCSVICNNAGVLFIHAAAENTCVADILEPTYVPPIVDSFFVLNKVRSYEGTSKPLLAVQVTELVDGMFIGCSFNHVVVDGKSLWHFINSWAEISRSCCHHQISKPPTLERWFPDGVQRPIRFPFTLEQQKNHSDGLSFSSFDDEKLCLSNRVFHFTKEKIVQLKLKINEEIGTIKISSLQALLTHLWCSVMCSKQFDPQEEVFNRVVIGVGPRLVPPLPENYFGNAIISCMVKMKVGELLEEGGLCKGACEMNKLIASHTDEKLKNHYESWLRNPNFVRLANMVKNNFISISSSPWFDVYGNDFGWGKPVAVRSGYKANGLVTVFAGIEKGSIDLQVCLPHEILEAMENDPQFMNVVSN*