Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0672440 | XP_013442808.1 | 85.052 | 194 | 9 | 2 | 3 | 176 | 25 | 218 | 1.80e-102 | 303 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0672440 | sp|Q9LXD1|RLF_ARATH | 52.041 | 196 | 61 | 5 | 6 | 176 | 18 | 205 | 2.49e-60 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0672440 | A0A072TIW3 | 85.052 | 194 | 9 | 2 | 3 | 176 | 25 | 218 | 8.60e-103 | 303 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010500 | Msa0672440 | 0.803177 | 3.947295e-49 | -8.615850e-47 |
| Msa0030300 | Msa0672440 | 0.805875 | 1.080779e-49 | -8.615850e-47 |
| Msa0032470 | Msa0672440 | 0.800246 | 1.576690e-48 | -8.615850e-47 |
| Msa0043980 | Msa0672440 | 0.824830 | 6.526641e-54 | -8.615850e-47 |
| Msa0071250 | Msa0672440 | 0.811022 | 8.616611e-51 | -8.615850e-47 |
| Msa0086420 | Msa0672440 | 0.801376 | 9.270779e-49 | -8.615850e-47 |
| Msa0090550 | Msa0672440 | 0.821546 | 3.811619e-53 | -8.615850e-47 |
| Msa0093010 | Msa0672440 | 0.807185 | 5.719730e-50 | -8.615850e-47 |
| Msa0103790 | Msa0672440 | 0.806413 | 8.327696e-50 | -8.615850e-47 |
| Msa0104800 | Msa0672440 | 0.830484 | 2.861506e-55 | -8.615850e-47 |
| Msa0620330 | Msa0672440 | 0.816481 | 5.409457e-52 | -8.615850e-47 |
| Msa0625700 | Msa0672440 | 0.814200 | 1.739067e-51 | -8.615850e-47 |
| Msa0654620 | Msa0672440 | 0.838211 | 3.289621e-57 | -8.615850e-47 |
| Msa0672440 | Msa0676280 | 0.936333 | 2.052948e-97 | -8.615850e-47 |
| Msa0672440 | Msa0680480 | 0.818750 | 1.665143e-52 | -8.615850e-47 |
| Msa0672440 | Msa0682090 | 0.804069 | 2.578456e-49 | -8.615850e-47 |
| Msa0672440 | Msa0682140 | 0.804122 | 2.513945e-49 | -8.615850e-47 |
| Msa0672440 | Msa0683600 | 0.802724 | 4.898377e-49 | -8.615850e-47 |
| Msa0672440 | Msa0703440 | 0.816770 | 4.658411e-52 | -8.615850e-47 |
| Msa0672440 | Msa0703910 | 0.800134 | 1.661834e-48 | -8.615850e-47 |
| Msa0672440 | Msa0705990 | 0.813568 | 2.396351e-51 | -8.615850e-47 |
| Msa0672440 | Msa0721340 | 0.816393 | 5.660932e-52 | -8.615850e-47 |
| Msa0672440 | Msa0726080 | 0.840363 | 9.099142e-58 | -8.615850e-47 |
| Msa0672440 | Msa0742150 | 0.806765 | 7.017456e-50 | -8.615850e-47 |
| Msa0672440 | Msa0750850 | 0.808507 | 2.993635e-50 | -8.615850e-47 |
| Msa0672440 | Msa0764920 | 0.800725 | 1.259577e-48 | -8.615850e-47 |
| Msa0672440 | Msa0765180 | 0.810821 | 9.527269e-51 | -8.615850e-47 |
| Msa0672440 | Msa0773590 | 0.819445 | 1.157113e-52 | -8.615850e-47 |
| Msa0672440 | Msa0811040 | 0.810252 | 1.264418e-50 | -8.615850e-47 |
| Msa0672440 | Msa0822500 | 0.802297 | 5.998792e-49 | -8.615850e-47 |
| Msa0672440 | Msa0827280 | 0.806739 | 7.106930e-50 | -8.615850e-47 |
| Msa0672440 | Msa0829220 | 0.814962 | 1.179422e-51 | -8.615850e-47 |
| Msa0672440 | Msa0842770 | 0.806438 | 8.226469e-50 | -8.615850e-47 |
| Msa0672440 | Msa0846230 | 0.841620 | 4.256227e-58 | -8.615850e-47 |
| Msa0672440 | Msa0847900 | 0.804196 | 2.426294e-49 | -8.615850e-47 |
| Msa0672440 | Msa0861470 | 0.816832 | 4.512248e-52 | -8.615850e-47 |
| Msa0672440 | Msa0861570 | 0.816908 | 4.339434e-52 | -8.615850e-47 |
| Msa0672440 | Msa0865030 | 0.811889 | 5.586257e-51 | -8.615850e-47 |
| Msa0672440 | Msa0866400 | 0.808663 | 2.772178e-50 | -8.615850e-47 |
| Msa0672440 | Msa0980880 | 0.845778 | 3.283666e-59 | -8.615850e-47 |
| Msa0672440 | Msa1034150 | 0.804216 | 2.402688e-49 | -8.615850e-47 |
| Msa0672440 | Msa1063420 | 0.804283 | 2.326752e-49 | -8.615850e-47 |
| Msa0672440 | Msa1071320 | 0.817107 | 3.915025e-52 | -8.615850e-47 |
| Msa0672440 | Msa1081790 | -0.803869 | 2.837837e-49 | -8.615850e-47 |
| Msa0672440 | Msa1089320 | 0.805620 | 1.222279e-49 | -8.615850e-47 |
| Msa0672440 | Msa1114590 | 0.813384 | 2.630819e-51 | -8.615850e-47 |
| Msa0672440 | Msa1115280 | 0.805585 | 1.243133e-49 | -8.615850e-47 |
| Msa0672440 | Msa1143020 | 0.806338 | 8.633539e-50 | -8.615850e-47 |
| Msa0672440 | Msa1178580 | 0.807303 | 5.398739e-50 | -8.615850e-47 |
| Msa0672440 | Msa1202660 | 0.804182 | 2.442168e-49 | -8.615850e-47 |
| Msa0672440 | Msa1207310 | 0.837439 | 5.193644e-57 | -8.615850e-47 |
| Msa0672440 | Msa1207350 | 0.821142 | 4.724287e-53 | -8.615850e-47 |
| Msa0672440 | Msa1233850 | 0.815438 | 9.244929e-52 | -8.615850e-47 |
| Msa0672440 | Msa1250110 | 0.818912 | 1.529831e-52 | -8.615850e-47 |
| Msa0672440 | Msa1250730 | 0.802912 | 4.477981e-49 | -8.615850e-47 |
| Msa0672440 | Msa1270660 | 0.816403 | 5.629909e-52 | -8.615850e-47 |
| Msa0672440 | Msa1276150 | 0.807319 | 5.355771e-50 | -8.615850e-47 |
| Msa0672440 | Msa1295330 | 0.819549 | 1.095750e-52 | -8.615850e-47 |
| Msa0672440 | Msa1307180 | 0.834604 | 2.722270e-56 | -8.615850e-47 |
| Msa0672440 | Msa1315750 | 0.863521 | 2.345377e-64 | -8.615850e-47 |
| Msa0672440 | Msa1316360 | 0.824399 | 8.244058e-54 | -8.615850e-47 |
| Msa0672440 | Msa1316440 | 0.812666 | 3.780050e-51 | -8.615850e-47 |
| Msa0672440 | Msa1331320 | 0.810694 | 1.015042e-50 | -8.615850e-47 |
| Msa0672440 | Msa1331350 | 0.814903 | 1.215622e-51 | -8.615850e-47 |
| Msa0672440 | Msa1364210 | 0.805593 | 1.238754e-49 | -8.615850e-47 |
| Msa0672440 | Msa1370590 | 0.822815 | 1.936174e-53 | -8.615850e-47 |
| Msa0672440 | Msa1371240 | 0.809575 | 1.768121e-50 | -8.615850e-47 |
| Msa0672440 | Msa1384100 | 0.820146 | 8.002910e-53 | -8.615850e-47 |
| Msa0672440 | Msa1407190 | 0.822999 | 1.753448e-53 | -8.615850e-47 |
| Msa0672440 | Msa1432130 | 0.818206 | 2.211948e-52 | -8.615850e-47 |
| Msa0672440 | Msa1442790 | 0.811124 | 8.188944e-51 | -8.615850e-47 |
| Msa0672440 | Msa1444120 | 0.814386 | 1.581730e-51 | -8.615850e-47 |
| Msa0672440 | Msa1463900 | 0.806292 | 8.830974e-50 | -8.615850e-47 |
| Msa0124550 | Msa0672440 | 0.812020 | 5.231002e-51 | -8.615850e-47 |
| Msa0136120 | Msa0672440 | 0.803798 | 2.935198e-49 | -8.615850e-47 |
| Msa0138020 | Msa0672440 | 0.840448 | 8.641876e-58 | -8.615850e-47 |
| Msa0142500 | Msa0672440 | 0.812947 | 3.280963e-51 | -8.615850e-47 |
| Msa0150230 | Msa0672440 | 0.809992 | 1.438323e-50 | -8.615850e-47 |
| Msa0150260 | Msa0672440 | 0.808347 | 3.238352e-50 | -8.615850e-47 |
| Msa0151180 | Msa0672440 | 0.805921 | 1.056780e-49 | -8.615850e-47 |
| Msa0173390 | Msa0672440 | 0.810535 | 1.098306e-50 | -8.615850e-47 |
| Msa0175540 | Msa0672440 | 0.804870 | 1.755146e-49 | -8.615850e-47 |
| Msa0186950 | Msa0672440 | 0.800603 | 1.333963e-48 | -8.615850e-47 |
| Msa0197610 | Msa0672440 | 0.810996 | 8.731044e-51 | -8.615850e-47 |
| Msa0202930 | Msa0672440 | 0.826029 | 3.394831e-54 | -8.615850e-47 |
| Msa0380100 | Msa0672440 | 0.823354 | 1.449456e-53 | -8.615850e-47 |
| Msa0385490 | Msa0672440 | 0.803785 | 2.952928e-49 | -8.615850e-47 |
| Msa0393620 | Msa0672440 | 0.800974 | 1.120225e-48 | -8.615850e-47 |
| Msa0403770 | Msa0672440 | 0.802307 | 5.970206e-49 | -8.615850e-47 |
| Msa0422180 | Msa0672440 | 0.807639 | 4.580896e-50 | -8.615850e-47 |
| Msa0432500 | Msa0672440 | 0.828079 | 1.097222e-54 | -8.615850e-47 |
| Msa0435220 | Msa0672440 | 0.806042 | 9.965799e-50 | -8.615850e-47 |
| Msa0482040 | Msa0672440 | 0.815648 | 8.300017e-52 | -8.615850e-47 |
| Msa0240270 | Msa0672440 | 0.807198 | 5.684001e-50 | -8.615850e-47 |
| Msa0243090 | Msa0672440 | 0.801147 | 1.032835e-48 | -8.615850e-47 |
| Msa0269470 | Msa0672440 | 0.807801 | 4.233496e-50 | -8.615850e-47 |
| Msa0284450 | Msa0672440 | 0.868317 | 7.140752e-66 | -8.615850e-47 |
| Msa0285330 | Msa0672440 | 0.831039 | 2.092435e-55 | -8.615850e-47 |
| Msa0305410 | Msa0672440 | 0.800709 | 1.269303e-48 | -8.615850e-47 |
| Msa0482940 | Msa0672440 | 0.815922 | 7.213490e-52 | -8.615850e-47 |
| Msa0489660 | Msa0672440 | 0.806439 | 8.222940e-50 | -8.615850e-47 |
| Msa0518170 | Msa0672440 | 0.804821 | 1.797334e-49 | -8.615850e-47 |
| Msa0518380 | Msa0672440 | 0.803225 | 3.858754e-49 | -8.615850e-47 |
| Msa0532980 | Msa0672440 | 0.816901 | 4.353582e-52 | -8.615850e-47 |
| Msa0546570 | Msa0672440 | 0.814307 | 1.646907e-51 | -8.615850e-47 |
| Msa0548930 | Msa0672440 | 0.920632 | 1.001198e-87 | -8.615850e-47 |
| Msa0549780 | Msa0672440 | 0.811120 | 8.206859e-51 | -8.615850e-47 |
| Msa0566350 | Msa0672440 | 0.817225 | 3.682272e-52 | -8.615850e-47 |
| Msa0566750 | Msa0672440 | 0.812676 | 3.760910e-51 | -8.615850e-47 |
| Msa0587030 | Msa0672440 | 0.800450 | 1.432860e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0672440 | MtrunA17_Chr4g0019781 | 85.052 | 194 | 9 | 2 | 3 | 176 | 25 | 218 | 1.66e-106 | 303 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0672440 | AT5G09680.1 | 52.041 | 196 | 61 | 5 | 6 | 176 | 18 | 205 | 2.53e-61 | 189 |
| Msa0672440 | AT5G09680.2 | 52.041 | 196 | 61 | 5 | 6 | 176 | 18 | 205 | 2.53e-61 | 189 |
| Msa0672440 | AT5G09680.3 | 52.041 | 196 | 61 | 5 | 6 | 176 | 64 | 251 | 4.71e-61 | 190 |
Find 60 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGAGGATTCTTCCTTTA+TGG | 0.134703 | 4_4:-17369694 | None:intergenic |
| GGTTAACGCGGAATTCTTAC+TGG | 0.266085 | 4_4:+17373863 | Msa0672440:CDS |
| AGTACAGTTGTTCTGTAATC+TGG | 0.281609 | 4_4:+17374093 | Msa0672440:three_prime_UTR |
| ACAATAATGGTGGTATCTTA+TGG | 0.283733 | 4_4:+17369733 | Msa0672440:CDS |
| TGCATGTCATGCGTTGATTC+AGG | 0.285598 | 4_4:+17374334 | Msa0672440:three_prime_UTR |
| AATTGTTTAGAATGTTCATT+TGG | 0.289941 | 4_4:+17374269 | Msa0672440:three_prime_UTR |
| CCAGGAGTCATTATTCAATA+AGG | 0.293311 | 4_4:+17373989 | Msa0672440:three_prime_UTR |
| TAGAATGTTCATTTGGGTTA+TGG | 0.308604 | 4_4:+17374276 | Msa0672440:three_prime_UTR |
| GTTACTACTGCTTGCATTTG+AGG | 0.317183 | 4_4:-17369709 | None:intergenic |
| TGATTCTTCAAACTCTAAAA+AGG | 0.332088 | 4_4:+17369773 | Msa0672440:CDS |
| CCCTCTTCTATTTACTTGCC+AGG | 0.340284 | 4_4:+17373971 | Msa0672440:three_prime_UTR |
| CGCATGACATGCACCCTACT+TGG | 0.351667 | 4_4:-17374324 | None:intergenic |
| TCTGATTAAAGAATCCCTAT+TGG | 0.352797 | 4_4:+17374050 | Msa0672440:three_prime_UTR |
| CCAGGGTGAAACGTCATATA+TGG | 0.357413 | 4_4:-17371513 | None:intergenic |
| ATTGTATGACGAACTCCAAT+AGG | 0.360769 | 4_4:-17374065 | None:intergenic |
| TATCAGATAAATACCATGCT+TGG | 0.376980 | 4_4:+17373841 | Msa0672440:intron |
| CGAACTCATCCTGACCTTGC+AGG | 0.392085 | 4_4:+17369978 | Msa0672440:CDS |
| GAACAGGAGACTAATTTCTA+TGG | 0.394765 | 4_4:+17371419 | Msa0672440:CDS |
| GTCTAAAAGGACAGTCGAAC+AGG | 0.400231 | 4_4:+17371403 | Msa0672440:CDS |
| TATGTTGATCCAGGTCTAAA+AGG | 0.419525 | 4_4:+17371390 | Msa0672440:intron |
| ATCAGATAAATACCATGCTT+GGG | 0.425755 | 4_4:+17373842 | Msa0672440:intron |
| AGCAGTAGTAACAACAATAA+TGG | 0.427293 | 4_4:+17369720 | Msa0672440:CDS |
| TGAAAAGGGTTATAGTCAAA+TGG | 0.427823 | 4_4:+17369938 | Msa0672440:CDS |
| GGGCCTGTGAAGAGGTATAA+AGG | 0.429978 | 4_4:-17373951 | None:intergenic |
| ATTGTTTAGAATGTTCATTT+GGG | 0.452245 | 4_4:+17374270 | Msa0672440:three_prime_UTR |
| AATCGCGGATATTTCCATAA+AGG | 0.455333 | 4_4:+17369680 | Msa0672440:CDS |
| AATGAAGCTAGCCTTGGTTC+AGG | 0.458888 | 4_4:+17373927 | Msa0672440:three_prime_UTR |
| ATAACAGCACCTGCAAGGTC+AGG | 0.484107 | 4_4:-17369987 | None:intergenic |
| CGAATCCTTAGCATCACTCT+TGG | 0.489419 | 4_4:-17369850 | None:intergenic |
| TTGTATGACGAACTCCAATA+GGG | 0.490897 | 4_4:-17374064 | None:intergenic |
| CCTTATTGAATAATGACTCC+TGG | 0.499448 | 4_4:-17373989 | None:intergenic |
| GGTCCTTTATACCTCTTCAC+AGG | 0.505118 | 4_4:+17373948 | Msa0672440:three_prime_UTR |
| GGAACTTTGGCCCGAACCGT+TGG | 0.513323 | 4_4:-17369912 | None:intergenic |
| ACATGCACCCTACTTGGAAA+AGG | 0.516185 | 4_4:-17374318 | None:intergenic |
| GGTGGTATCTTATGGAAGGA+TGG | 0.518034 | 4_4:+17369741 | Msa0672440:CDS |
| AGGGTTATAGTCAAATGGAT+TGG | 0.535477 | 4_4:+17369943 | Msa0672440:CDS |
| AAAATGCCTGGTGGGTACCT+TGG | 0.553044 | 4_4:+17373887 | Msa0672440:CDS |
| TGTAGAGTGTAAGCAATGGC+TGG | 0.562076 | 4_4:+17374236 | Msa0672440:intron |
| TGAAGAAATGAAGCTAGCCT+TGG | 0.566041 | 4_4:+17373921 | Msa0672440:exon |
| ATCAACCAAGAGTGATGCTA+AGG | 0.568914 | 4_4:+17369845 | Msa0672440:CDS |
| GTTAGAAAGCACAAAACAGA+AGG | 0.581274 | 4_4:+17371447 | Msa0672440:CDS |
| TTCTGTTCTGACAACTTCTG+AGG | 0.595702 | 4_4:-17369873 | None:intergenic |
| TAATGGTGGTATCTTATGGA+AGG | 0.596595 | 4_4:+17369737 | Msa0672440:CDS |
| ATAGAAGAGGGCCTGTGAAG+AGG | 0.600977 | 4_4:-17373959 | None:intergenic |
| TCCTGGCAAGTAAATAGAAG+AGG | 0.605633 | 4_4:-17373972 | None:intergenic |
| TCTTCACTGACTTTCATCCA+AGG | 0.610470 | 4_4:-17373904 | None:intergenic |
| CAAGCTTGTTTCAGAAATCG+CGG | 0.617791 | 4_4:+17369665 | Msa0672440:intron |
| CCATATATGACGTTTCACCC+TGG | 0.621706 | 4_4:+17371513 | Msa0672440:CDS |
| CCTGGCAAGTAAATAGAAGA+GGG | 0.631704 | 4_4:-17373971 | None:intergenic |
| ACAGAATAACAGCACCTGCA+AGG | 0.634591 | 4_4:-17369992 | None:intergenic |
| AGTAGTAACAACAATAATGG+TGG | 0.644225 | 4_4:+17369723 | Msa0672440:CDS |
| GGTATAAAGGACCTGAACCA+AGG | 0.652448 | 4_4:-17373938 | None:intergenic |
| TCCTTGTAGAGTGTAAGCAA+TGG | 0.655152 | 4_4:+17374232 | Msa0672440:intron |
| ATTCCGCGTTAACCCAAGCA+TGG | 0.657038 | 4_4:-17373854 | None:intergenic |
| ATACCATGCTTGGGTTAACG+CGG | 0.662040 | 4_4:+17373851 | Msa0672440:CDS |
| ACAAAACAGAAGGTGAAATG+TGG | 0.673732 | 4_4:+17371457 | Msa0672440:CDS |
| ATGGTGATATATTGTAGACA+CGG | 0.675806 | 4_4:-17371494 | None:intergenic |
| TTTCATCCAAGGTACCCACC+AGG | 0.678591 | 4_4:-17373893 | None:intergenic |
| TATATGACGTTTCACCCTGG+AGG | 0.704322 | 4_4:+17371516 | Msa0672440:CDS |
| GAAATGTGGACTGTATTGAA+AGG | 0.710255 | 4_4:+17371471 | Msa0672440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTCTAAATTATATCAA+AGG | - | chr4_4:17369417-17369436 | None:intergenic | 10.0% |
| !! | AAAAAATATTTAAAAAGTGA+GGG | - | chr4_4:17370845-17370864 | None:intergenic | 10.0% |
| !! | AAAAAAATATTTAAAAAGTG+AGG | - | chr4_4:17370846-17370865 | None:intergenic | 10.0% |
| !!! | TCACTTTTTAAATATTTTTT+TGG | + | chr4_4:17370845-17370864 | Msa0672440:intron | 10.0% |
| !! | TTTCTAAATAATACAAATTT+GGG | - | chr4_4:17373473-17373492 | None:intergenic | 10.0% |
| !! | ATTTCTAAATAATACAAATT+TGG | - | chr4_4:17373474-17373493 | None:intergenic | 10.0% |
| !!! | TAAAAACAATAGATTTTCAT+TGG | + | chr4_4:17369333-17369352 | Msa0672440:intron | 15.0% |
| !! | AAAAATATTTAAAAAGTGAG+GGG | - | chr4_4:17370844-17370863 | None:intergenic | 15.0% |
| !! | TATAGTTATGTACATATAAA+TGG | - | chr4_4:17371221-17371240 | None:intergenic | 15.0% |
| !!! | TTACAATTTTTAAGAATAAG+AGG | + | chr4_4:17371344-17371363 | Msa0672440:intron | 15.0% |
| !! | TAAATCCTAATATAAATATC+AGG | - | chr4_4:17371912-17371931 | None:intergenic | 15.0% |
| !! | TATTAGGATTTAAATTGATT+AGG | + | chr4_4:17371920-17371939 | Msa0672440:intron | 15.0% |
| !! | ACTTCTTAGAAAAAATTAAT+TGG | - | chr4_4:17372195-17372214 | None:intergenic | 15.0% |
| !! | TTGTATTATTTAGAAATTGA+AGG | + | chr4_4:17373477-17373496 | Msa0672440:intron | 15.0% |
| !!! | TCATTTTCTCAAATTATTAC+CGG | - | chr4_4:17368983-17369002 | None:intergenic | 20.0% |
| !!! | GTTTACTTAGTATATTTTGT+TGG | + | chr4_4:17369210-17369229 | Msa0672440:intron | 20.0% |
| !!! | CTAATTTAAAATGACTTTGT+AGG | + | chr4_4:17369617-17369636 | Msa0672440:intron | 20.0% |
| !! | GATTAGATATTATTAGAACT+TGG | - | chr4_4:17370222-17370241 | None:intergenic | 20.0% |
| !! | AGAAAAAAGAATGGAATTAA+GGG | - | chr4_4:17370982-17371001 | None:intergenic | 20.0% |
| !! | AAGAAAAAAGAATGGAATTA+AGG | - | chr4_4:17370983-17371002 | None:intergenic | 20.0% |
| !!! | TTTCTTTTCACTTCAATTAA+CGG | + | chr4_4:17370997-17371016 | Msa0672440:intron | 20.0% |
| !! | AAAGAAAGCTAACATTTATA+AGG | - | chr4_4:17371094-17371113 | None:intergenic | 20.0% |
| !! | CAAACTTAAATAATACAGTA+CGG | - | chr4_4:17371713-17371732 | None:intergenic | 20.0% |
| !! | CAATTCCTGATATTTATATT+AGG | + | chr4_4:17371904-17371923 | Msa0672440:intron | 20.0% |
| !! | ATGTGCTATATTATTTATAG+AGG | + | chr4_4:17371990-17372009 | Msa0672440:intron | 20.0% |
| !! | TTCTATTACAAACATAAACA+GGG | - | chr4_4:17372112-17372131 | None:intergenic | 20.0% |
| !! | TTTCTATTACAAACATAAAC+AGG | - | chr4_4:17372113-17372132 | None:intergenic | 20.0% |
| !! | GTTTATGTTTGTAATAGAAA+TGG | + | chr4_4:17372113-17372132 | Msa0672440:intron | 20.0% |
| !! | TCTTAGAAAAAATTAATTGG+CGG | - | chr4_4:17372192-17372211 | None:intergenic | 20.0% |
| !!! | GTTACACATTTTTTTTGATA+TGG | + | chr4_4:17372429-17372448 | Msa0672440:intron | 20.0% |
| !! | TTCTATTATATACACAAACA+AGG | + | chr4_4:17372576-17372595 | Msa0672440:intron | 20.0% |
| !!! | AATATTTTAGATCTATGTGA+AGG | - | chr4_4:17372631-17372650 | None:intergenic | 20.0% |
| !!! | TGATTTTAGCATTAACTTAT+TGG | + | chr4_4:17373023-17373042 | Msa0672440:intron | 20.0% |
| !! | TTATGAATATGAATCTATGA+TGG | - | chr4_4:17373143-17373162 | None:intergenic | 20.0% |
| !! | GTGTTAGAATAAAAAAATAG+AGG | + | chr4_4:17373323-17373342 | Msa0672440:intron | 20.0% |
| !!! | TTAACAAACACATTTTAAGT+AGG | - | chr4_4:17373535-17373554 | None:intergenic | 20.0% |
| !!! | AATTGTTTAGAATGTTCATT+TGG | + | chr4_4:17374269-17374288 | Msa0672440:three_prime_UTR | 20.0% |
| !!! | ATTGTTTAGAATGTTCATTT+GGG | + | chr4_4:17374270-17374289 | Msa0672440:three_prime_UTR | 20.0% |
| ! | AAATGGAAATGAAAAAAGAG+AGG | - | chr4_4:17368877-17368896 | None:intergenic | 25.0% |
| ! | ATGTAGAAATATCTTAGACA+CGG | + | chr4_4:17368934-17368953 | Msa0672440:intron | 25.0% |
| ! | ACATAATTCAGTGTAATCAT+AGG | + | chr4_4:17369002-17369021 | Msa0672440:intron | 25.0% |
| !!! | TTGTTTTTATCTATGAAGCA+TGG | + | chr4_4:17369440-17369459 | Msa0672440:intron | 25.0% |
| !!! | TTTTAAATTAGAAGAGCACA+TGG | - | chr4_4:17369608-17369627 | None:intergenic | 25.0% |
| !! | TGATTCTTCAAACTCTAAAA+AGG | + | chr4_4:17369773-17369792 | Msa0672440:CDS | 25.0% |
| !! | TTCAAGTATTGTCAACAATA+TGG | - | chr4_4:17370062-17370081 | None:intergenic | 25.0% |
| ! | AGTTGAAAAATGAATATGTG+TGG | + | chr4_4:17370111-17370130 | Msa0672440:intron | 25.0% |
| ! | TATCATACTATCATAAGCAT+TGG | - | chr4_4:17370175-17370194 | None:intergenic | 25.0% |
| ! | TAGATATTATTAGAACTTGG+AGG | - | chr4_4:17370219-17370238 | None:intergenic | 25.0% |
| ! | TAATATCTAATCCCAATTGT+TGG | + | chr4_4:17370230-17370249 | Msa0672440:intron | 25.0% |
| !! | ATTTTACGTATAATCCGTAA+GGG | - | chr4_4:17370726-17370745 | None:intergenic | 25.0% |
| !! | TTTTTGGATATTTCTTTCCA+AGG | + | chr4_4:17370861-17370880 | Msa0672440:intron | 25.0% |
| ! | GAAAAAAGAATGGAATTAAG+GGG | - | chr4_4:17370981-17371000 | None:intergenic | 25.0% |
| ! | GAAGTGAAAAGAAAAAAGAA+TGG | - | chr4_4:17370991-17371010 | None:intergenic | 25.0% |
| ! | TGTACATAACTATATATCAG+AGG | + | chr4_4:17371227-17371246 | Msa0672440:intron | 25.0% |
| !!! | TTGTACTTGTTTTGTTATGT+TGG | + | chr4_4:17371260-17371279 | Msa0672440:intron | 25.0% |
| ! | ATTATATATGCATTTCCTGT+TGG | + | chr4_4:17371608-17371627 | Msa0672440:intron | 25.0% |
| ! | TTATATATGCATTTCCTGTT+GGG | + | chr4_4:17371609-17371628 | Msa0672440:intron | 25.0% |
| ! | TAGAAACAAACAAATGAAGT+AGG | - | chr4_4:17371740-17371759 | None:intergenic | 25.0% |
| ! | ACGAAAAGCTAAATATTCAA+TGG | - | chr4_4:17371777-17371796 | None:intergenic | 25.0% |
| !!! | TTTTCTAAGAAGTTTCTGTA+AGG | + | chr4_4:17372202-17372221 | Msa0672440:intron | 25.0% |
| !! | TGGCAAACATAATAAACTTT+TGG | + | chr4_4:17372449-17372468 | Msa0672440:intron | 25.0% |
| !!! | ACATAATAAACTTTTGGTTG+AGG | + | chr4_4:17372455-17372474 | Msa0672440:intron | 25.0% |
| !! | ATGATTTGTCATGTTTACTT+AGG | + | chr4_4:17372510-17372529 | Msa0672440:intron | 25.0% |
| ! | CTATTATAAGTATGAACAGA+GGG | - | chr4_4:17372787-17372806 | None:intergenic | 25.0% |
| ! | TCTATTATAAGTATGAACAG+AGG | - | chr4_4:17372788-17372807 | None:intergenic | 25.0% |
| ! | TTGGTTTATTAACACAAACA+AGG | + | chr4_4:17373042-17373061 | Msa0672440:intron | 25.0% |
| !! | ATGAATCTATGATGGTTTTT+AGG | - | chr4_4:17373135-17373154 | None:intergenic | 25.0% |
| !! | CTTAAAATGTGTTTGTTAAG+TGG | + | chr4_4:17373536-17373555 | Msa0672440:intron | 25.0% |
| ! | GGATATAAAAATACACATGT+AGG | - | chr4_4:17374195-17374214 | None:intergenic | 25.0% |
| !!! | ACATGTGTATTTTTATATCC+TGG | + | chr4_4:17374195-17374214 | Msa0672440:three_prime_UTR | 25.0% |
| !!! | TAATGACTTCACTTTTTGTC+AGG | + | chr4_4:17368844-17368863 | Msa0672440:intron | 30.0% |
| AGTGAATGAGGGTAATAAAA+TGG | - | chr4_4:17368894-17368913 | None:intergenic | 30.0% | |
| AGCTTAGACATCATAGTTTA+AGG | + | chr4_4:17369099-17369118 | Msa0672440:intron | 30.0% | |
| GTAAACTCTATGACTCTATT+TGG | - | chr4_4:17369196-17369215 | None:intergenic | 30.0% | |
| CACTTGCAAAAGTAAACTTT+AGG | + | chr4_4:17369303-17369322 | Msa0672440:intron | 30.0% | |
| AGACTAATTCACACTACATA+CGG | + | chr4_4:17369367-17369386 | Msa0672440:intron | 30.0% | |
| TTATCTATGAAGCATGGATA+CGG | + | chr4_4:17369446-17369465 | Msa0672440:intron | 30.0% | |
| ATTTGAGGATTCTTCCTTTA+TGG | - | chr4_4:17369697-17369716 | None:intergenic | 30.0% | |
| AGCAGTAGTAACAACAATAA+TGG | + | chr4_4:17369720-17369739 | Msa0672440:CDS | 30.0% | |
| AGTAGTAACAACAATAATGG+TGG | + | chr4_4:17369723-17369742 | Msa0672440:CDS | 30.0% | |
| ACAATAATGGTGGTATCTTA+TGG | + | chr4_4:17369733-17369752 | Msa0672440:CDS | 30.0% | |
| ! | TTCTTCAAACTCTAAAAAGG+AGG | + | chr4_4:17369776-17369795 | Msa0672440:CDS | 30.0% |
| ! | TCTTCAAACTCTAAAAAGGA+GGG | + | chr4_4:17369777-17369796 | Msa0672440:CDS | 30.0% |
| ! | TGACTATAACCCTTTTCAAA+AGG | - | chr4_4:17369936-17369955 | None:intergenic | 30.0% |
| TGAAAAGGGTTATAGTCAAA+TGG | + | chr4_4:17369938-17369957 | Msa0672440:CDS | 30.0% | |
| !! | CTATCATAAGCATTGGAAAT+TGG | - | chr4_4:17370168-17370187 | None:intergenic | 30.0% |
| GGTCATATCAACTTTAGTAA+TGG | - | chr4_4:17370198-17370217 | None:intergenic | 30.0% | |
| ATAACACTTACTCTCAATCA+TGG | + | chr4_4:17370277-17370296 | Msa0672440:intron | 30.0% | |
| AACACTAATCGTAAAATCGT+AGG | - | chr4_4:17370333-17370352 | None:intergenic | 30.0% | |
| !! | TTTCACTGATTTAGGATTCT+GGG | - | chr4_4:17370378-17370397 | None:intergenic | 30.0% |
| !! | ATTTCACTGATTTAGGATTC+TGG | - | chr4_4:17370379-17370398 | None:intergenic | 30.0% |
| !! | GGATTTCATTTCACTGATTT+AGG | - | chr4_4:17370386-17370405 | None:intergenic | 30.0% |
| ATTAACGGAAGCGATTATAT+AGG | - | chr4_4:17370407-17370426 | None:intergenic | 30.0% | |
| ! | ATCGTGGATTTTACGATTAA+CGG | - | chr4_4:17370422-17370441 | None:intergenic | 30.0% |
| ! | TTTTACGTATAATCCGTAAG+GGG | - | chr4_4:17370725-17370744 | None:intergenic | 30.0% |
| ! | GATTTTACGTATAATCCGTA+AGG | - | chr4_4:17370727-17370746 | None:intergenic | 30.0% |
| AAATGAAAATCACACAGCAA+AGG | - | chr4_4:17370919-17370938 | None:intergenic | 30.0% | |
| CTAACATTTATAAGGAAGAG+TGG | - | chr4_4:17371086-17371105 | None:intergenic | 30.0% | |
| ATAAATGGTCTACAACTTTC+TGG | - | chr4_4:17371206-17371225 | None:intergenic | 30.0% | |
| ATGGTGATATATTGTAGACA+CGG | - | chr4_4:17371497-17371516 | None:intergenic | 30.0% | |
| TATATATGCATTTCCTGTTG+GGG | + | chr4_4:17371610-17371629 | Msa0672440:intron | 30.0% | |
| TACAGTACGGAATAACAAAA+AGG | - | chr4_4:17371700-17371719 | None:intergenic | 30.0% | |
| TGTTCATAGAGATTGACATA+TGG | - | chr4_4:17371812-17371831 | None:intergenic | 30.0% | |
| CATCCTAGAAAAAAATTCAG+TGG | + | chr4_4:17372659-17372678 | Msa0672440:intron | 30.0% | |
| ACAGATCTACAATCTTTACA+TGG | - | chr4_4:17372734-17372753 | None:intergenic | 30.0% | |
| ATAGTATGTTATAGCTTGAG+TGG | + | chr4_4:17372938-17372957 | Msa0672440:intron | 30.0% | |
| GCTAAAATCAATTGCAATGA+CGG | - | chr4_4:17373013-17373032 | None:intergenic | 30.0% | |
| !! | TTTTTAGGAATATGTCTCAC+CGG | - | chr4_4:17373120-17373139 | None:intergenic | 30.0% |
| TTCATATTCATAACCACCTT+CGG | + | chr4_4:17373150-17373169 | Msa0672440:intron | 30.0% | |
| ! | AATCTTACTAAGCTTTAGCT+TGG | + | chr4_4:17373294-17373313 | Msa0672440:intron | 30.0% |
| ! | ATCTTACTAAGCTTTAGCTT+GGG | + | chr4_4:17373295-17373314 | Msa0672440:intron | 30.0% |
| TATGTTGAACATCATATGTG+AGG | - | chr4_4:17373634-17373653 | None:intergenic | 30.0% | |
| TATCAGATAAATACCATGCT+TGG | + | chr4_4:17373841-17373860 | Msa0672440:intron | 30.0% | |
| ATCAGATAAATACCATGCTT+GGG | + | chr4_4:17373842-17373861 | Msa0672440:intron | 30.0% | |
| TCTGATTAAAGAATCCCTAT+TGG | + | chr4_4:17374050-17374069 | Msa0672440:three_prime_UTR | 30.0% | |
| ! | TAGAATGTTCATTTGGGTTA+TGG | + | chr4_4:17374276-17374295 | Msa0672440:three_prime_UTR | 30.0% |
| TCTCAAATTATTACCGGTGT+CGG | - | chr4_4:17368977-17368996 | None:intergenic | 35.0% | |
| AATCGCGGATATTTCCATAA+AGG | + | chr4_4:17369680-17369699 | Msa0672440:CDS | 35.0% | |
| TAATGGTGGTATCTTATGGA+AGG | + | chr4_4:17369737-17369756 | Msa0672440:CDS | 35.0% | |
| ! | TCTAAAAAGGAGGGTACAAT+TGG | + | chr4_4:17369786-17369805 | Msa0672440:CDS | 35.0% |
| GAGTTCTGTTAAAAAGCCAA+CGG | + | chr4_4:17369896-17369915 | Msa0672440:CDS | 35.0% | |
| !! | GCCAAAGTTCCTTTTGAAAA+GGG | + | chr4_4:17369924-17369943 | Msa0672440:CDS | 35.0% |
| ! | ACCCTTTTCAAAAGGAACTT+TGG | - | chr4_4:17369928-17369947 | None:intergenic | 35.0% |
| AGGGTTATAGTCAAATGGAT+TGG | + | chr4_4:17369943-17369962 | Msa0672440:CDS | 35.0% | |
| TTGAAAGAGTTAAGAGCTAC+TGG | + | chr4_4:17370077-17370096 | Msa0672440:intron | 35.0% | |
| ! | GATAGCTTTTGCCAACAATT+GGG | - | chr4_4:17370244-17370263 | None:intergenic | 35.0% |
| ! | AGATAGCTTTTGCCAACAAT+TGG | - | chr4_4:17370245-17370264 | None:intergenic | 35.0% |
| CAATCATGGTAGTCAAAATC+AGG | + | chr4_4:17370291-17370310 | Msa0672440:intron | 35.0% | |
| ! | ATGGAACGTTTTCAAATCGT+GGG | + | chr4_4:17370512-17370531 | Msa0672440:intron | 35.0% |
| AGAAACCCATTTCAGTAACT+CGG | + | chr4_4:17370539-17370558 | Msa0672440:intron | 35.0% | |
| TTAACCCGAGTTACTGAAAT+GGG | - | chr4_4:17370547-17370566 | None:intergenic | 35.0% | |
| AGTCTCACGAGTTACTAAAA+CGG | - | chr4_4:17370579-17370598 | None:intergenic | 35.0% | |
| CTAGTTTAAGTGCATCATGT+AGG | + | chr4_4:17370619-17370638 | Msa0672440:intron | 35.0% | |
| ATGTTGTTATGTTCCCCTTA+CGG | + | chr4_4:17370709-17370728 | Msa0672440:intron | 35.0% | |
| AGAGCAAGGTAGTAAAAATC+AGG | - | chr4_4:17370749-17370768 | None:intergenic | 35.0% | |
| AAAAGAATGGAATTAAGGGG+CGG | - | chr4_4:17370978-17370997 | None:intergenic | 35.0% | |
| AGAGCTTGAAACCAAAAGTA+GGG | - | chr4_4:17371032-17371051 | None:intergenic | 35.0% | |
| AACATCATGTATGTTGATCC+AGG | + | chr4_4:17371381-17371400 | Msa0672440:intron | 35.0% | |
| TATGTTGATCCAGGTCTAAA+AGG | + | chr4_4:17371390-17371409 | Msa0672440:intron | 35.0% | |
| GAACAGGAGACTAATTTCTA+TGG | + | chr4_4:17371419-17371438 | Msa0672440:CDS | 35.0% | |
| ! | GTTAGAAAGCACAAAACAGA+AGG | + | chr4_4:17371447-17371466 | Msa0672440:CDS | 35.0% |
| ACAAAACAGAAGGTGAAATG+TGG | + | chr4_4:17371457-17371476 | Msa0672440:CDS | 35.0% | |
| ! | GAAATGTGGACTGTATTGAA+AGG | + | chr4_4:17371471-17371490 | Msa0672440:CDS | 35.0% |
| !!! | AGTTGATAGTTTTACCTCCA+GGG | - | chr4_4:17371533-17371552 | None:intergenic | 35.0% |
| !! | AGGTGTTGATATGTTGATGA+AGG | + | chr4_4:17371640-17371659 | Msa0672440:intron | 35.0% |
| TGATTAGGATTAGAACTTGC+AGG | + | chr4_4:17371935-17371954 | Msa0672440:intron | 35.0% | |
| ATTCAACATGTTACCAGATC+AGG | + | chr4_4:17372046-17372065 | Msa0672440:intron | 35.0% | |
| !! | ATAGAAATGGATTGTACACC+AGG | + | chr4_4:17372126-17372145 | Msa0672440:intron | 35.0% |
| AGAAAAAATTAATTGGCGGC+TGG | - | chr4_4:17372188-17372207 | None:intergenic | 35.0% | |
| GATTGTAGATCTGTGTGAAT+GGG | + | chr4_4:17372224-17372243 | Msa0672440:intron | 35.0% | |
| !!! | CTGCCACTGAATTTTTTTCT+AGG | - | chr4_4:17372665-17372684 | None:intergenic | 35.0% |
| AGATTGTAGATCTGTGTGAA+TGG | + | chr4_4:17372739-17372758 | Msa0672440:intron | 35.0% | |
| !! | GCAAAGACAAAAGTGTTCAT+CGG | - | chr4_4:17373182-17373201 | None:intergenic | 35.0% |
| TAGAGAAAAGAGAAACAGCA+GGG | - | chr4_4:17373245-17373264 | None:intergenic | 35.0% | |
| TTTCTCTACATTCCATCAAC+CGG | + | chr4_4:17373257-17373276 | Msa0672440:intron | 35.0% | |
| !! | AGATTTCAGCTTGTTACAAC+CGG | - | chr4_4:17373279-17373298 | None:intergenic | 35.0% |
| ATCACCTGATTTAGACAAAC+AGG | + | chr4_4:17373374-17373393 | Msa0672440:intron | 35.0% | |
| TGATCCTGTTTGTCTAAATC+AGG | - | chr4_4:17373381-17373400 | None:intergenic | 35.0% | |
| TCTTAGTTATGTTCCATGTG+AGG | + | chr4_4:17373433-17373452 | Msa0672440:intron | 35.0% | |
| TTATGTTCCATGTGAGGAAT+TGG | + | chr4_4:17373439-17373458 | Msa0672440:intron | 35.0% | |
| CATAATTCCAATTCCTCACA+TGG | - | chr4_4:17373449-17373468 | None:intergenic | 35.0% | |
| TCTTAGTTTCCCAAAATGCT+TGG | + | chr4_4:17373568-17373587 | Msa0672440:intron | 35.0% | |
| ! | TGTTTCAAAGTACTTGCAGT+TGG | + | chr4_4:17373669-17373688 | Msa0672440:intron | 35.0% |
| TCTAAGCAACAACTGAATCA+TGG | - | chr4_4:17373724-17373743 | None:intergenic | 35.0% | |
| ! | TGAAGTACTATGTGAAGTGT+GGG | - | chr4_4:17373771-17373790 | None:intergenic | 35.0% |
| ATTCTTACTGGAAAAATGCC+TGG | + | chr4_4:17373875-17373894 | Msa0672440:CDS | 35.0% | |
| CCTTATTGAATAATGACTCC+TGG | - | chr4_4:17373992-17374011 | None:intergenic | 35.0% | |
| CCAGGAGTCATTATTCAATA+AGG | + | chr4_4:17373989-17374008 | Msa0672440:three_prime_UTR | 35.0% | |
| TTGTATGACGAACTCCAATA+GGG | - | chr4_4:17374067-17374086 | None:intergenic | 35.0% | |
| ATTGTATGACGAACTCCAAT+AGG | - | chr4_4:17374068-17374087 | None:intergenic | 35.0% | |
| AGTACAGTTGTTCTGTAATC+TGG | + | chr4_4:17374093-17374112 | Msa0672440:three_prime_UTR | 35.0% | |
| TTACCCTCATTCACTTGTTC+AGG | + | chr4_4:17368899-17368918 | Msa0672440:intron | 40.0% | |
| CTTCCTGAACAAGTGAATGA+GGG | - | chr4_4:17368905-17368924 | None:intergenic | 40.0% | |
| ACTTCCTGAACAAGTGAATG+AGG | - | chr4_4:17368906-17368925 | None:intergenic | 40.0% | |
| ! | CAAGCTTGTTTCAGAAATCG+CGG | + | chr4_4:17369665-17369684 | Msa0672440:intron | 40.0% |
| GTTACTACTGCTTGCATTTG+AGG | - | chr4_4:17369712-17369731 | None:intergenic | 40.0% | |
| ATCAACCAAGAGTGATGCTA+AGG | + | chr4_4:17369845-17369864 | Msa0672440:CDS | 40.0% | |
| TTCTGTTCTGACAACTTCTG+AGG | - | chr4_4:17369876-17369895 | None:intergenic | 40.0% | |
| CTGTTAAAAAGCCAACGGTT+CGG | + | chr4_4:17369901-17369920 | Msa0672440:CDS | 40.0% | |
| TGTTAAAAAGCCAACGGTTC+GGG | + | chr4_4:17369902-17369921 | Msa0672440:CDS | 40.0% | |
| !! | GGCCAAAGTTCCTTTTGAAA+AGG | + | chr4_4:17369923-17369942 | Msa0672440:CDS | 40.0% |
| ! | GTGTGGCATGTATCAGTTTT+TGG | + | chr4_4:17370128-17370147 | Msa0672440:intron | 40.0% |
| TACGATTAGTGTTGCCTTGA+AGG | + | chr4_4:17370340-17370359 | Msa0672440:intron | 40.0% | |
| TAAAATCCACGATCTTCGAG+TGG | + | chr4_4:17370429-17370448 | Msa0672440:intron | 40.0% | |
| ! | GATGGAACGTTTTCAAATCG+TGG | + | chr4_4:17370511-17370530 | Msa0672440:intron | 40.0% |
| GAAACCCATTTCAGTAACTC+GGG | + | chr4_4:17370540-17370559 | Msa0672440:intron | 40.0% | |
| GTTAACCCGAGTTACTGAAA+TGG | - | chr4_4:17370548-17370567 | None:intergenic | 40.0% | |
| GTCTCACGAGTTACTAAAAC+GGG | - | chr4_4:17370578-17370597 | None:intergenic | 40.0% | |
| TCAATTCCAGAGGCCAAATT+TGG | - | chr4_4:17370777-17370796 | None:intergenic | 40.0% | |
| !! | ATTTGGCCTCTGGAATTGAA+TGG | + | chr4_4:17370778-17370797 | Msa0672440:intron | 40.0% |
| GATCAACCATTCAATTCCAG+AGG | - | chr4_4:17370787-17370806 | None:intergenic | 40.0% | |
| !! | AGTTTTAACGTAGCAGAGCT+CGG | + | chr4_4:17370815-17370834 | Msa0672440:intron | 40.0% |
| AAAGAATGGAATTAAGGGGC+GGG | - | chr4_4:17370977-17370996 | None:intergenic | 40.0% | |
| CAGAGCTTGAAACCAAAAGT+AGG | - | chr4_4:17371033-17371052 | None:intergenic | 40.0% | |
| ! | ACAACTTTCTGGTCAGACAA+AGG | - | chr4_4:17371195-17371214 | None:intergenic | 40.0% |
| !!! | GAGTTGATAGTTTTACCTCC+AGG | - | chr4_4:17371534-17371553 | None:intergenic | 40.0% |
| TTTCCTGTTGGGGAAAAATC+AGG | + | chr4_4:17371620-17371639 | Msa0672440:intron | 40.0% | |
| ! | TGATATGTTGATGAAGGCAG+TGG | + | chr4_4:17371646-17371665 | Msa0672440:intron | 40.0% |
| ! | GATATGTTGATGAAGGCAGT+GGG | + | chr4_4:17371647-17371666 | Msa0672440:intron | 40.0% |
| TCTCTGTGCATAGATTGCAT+TGG | + | chr4_4:17371834-17371853 | Msa0672440:intron | 40.0% | |
| CACATGATCAATACCTGATC+TGG | - | chr4_4:17372062-17372081 | None:intergenic | 40.0% | |
| !! | GGTATTGATCATGTGACTAG+TGG | + | chr4_4:17372067-17372086 | Msa0672440:intron | 40.0% |
| TTGTACACCAGGAAGTTTCT+AGG | + | chr4_4:17372137-17372156 | Msa0672440:intron | 40.0% | |
| GGATTGTAGATCTGTGTGAA+TGG | + | chr4_4:17372223-17372242 | Msa0672440:intron | 40.0% | |
| CTTTACATGGTATCAGAGCA+TGG | - | chr4_4:17372721-17372740 | None:intergenic | 40.0% | |
| !! | AAGACAAAAGTGTTCATCGG+AGG | - | chr4_4:17373179-17373198 | None:intergenic | 40.0% |
| GTAGAGAAAAGAGAAACAGC+AGG | - | chr4_4:17373246-17373265 | None:intergenic | 40.0% | |
| !! | TTACTAAGCTTTAGCTTGGG+AGG | + | chr4_4:17373298-17373317 | Msa0672440:intron | 40.0% |
| TAAGTAGGCACATTGATCTC+TGG | - | chr4_4:17373520-17373539 | None:intergenic | 40.0% | |
| TTCCCAAAATGCTTGGAAGT+TGG | + | chr4_4:17373575-17373594 | Msa0672440:intron | 40.0% | |
| TCCCAAAATGCTTGGAAGTT+GGG | + | chr4_4:17373576-17373595 | Msa0672440:intron | 40.0% | |
| ! | TCCCAACTTCCAAGCATTTT+GGG | - | chr4_4:17373580-17373599 | None:intergenic | 40.0% |
| ! | ATCCCAACTTCCAAGCATTT+TGG | - | chr4_4:17373581-17373600 | None:intergenic | 40.0% |
| ! | TTCAAAGTACTTGCAGTTGG+TGG | + | chr4_4:17373672-17373691 | Msa0672440:intron | 40.0% |
| ! | AGTTGTTGCTTAGATTCCCT+GGG | + | chr4_4:17373730-17373749 | Msa0672440:intron | 40.0% |
| ! | GAAGTACTATGTGAAGTGTG+GGG | - | chr4_4:17373770-17373789 | None:intergenic | 40.0% |
| ! | GTGAAGTACTATGTGAAGTG+TGG | - | chr4_4:17373772-17373791 | None:intergenic | 40.0% |
| TTACTGGAAAAATGCCTGGT+GGG | + | chr4_4:17373879-17373898 | Msa0672440:CDS | 40.0% | |
| !! | TCTTCACTGACTTTCATCCA+AGG | - | chr4_4:17373907-17373926 | None:intergenic | 40.0% |
| ! | TGAAGAAATGAAGCTAGCCT+TGG | + | chr4_4:17373921-17373940 | Msa0672440:exon | 40.0% |
| CCTGGCAAGTAAATAGAAGA+GGG | - | chr4_4:17373974-17373993 | None:intergenic | 40.0% | |
| TCCTGGCAAGTAAATAGAAG+AGG | - | chr4_4:17373975-17373994 | None:intergenic | 40.0% | |
| TCCTTGTAGAGTGTAAGCAA+TGG | + | chr4_4:17374232-17374251 | Msa0672440:intron | 40.0% | |
| ATGGCAAAAATGAAGAGCTC+AGG | + | chr4_4:17374295-17374314 | Msa0672440:three_prime_UTR | 40.0% | |
| ATACGGACACTAGACACAGA+CGG | + | chr4_4:17369463-17369482 | Msa0672440:intron | 45.0% | |
| TATGAAGCACGAACACTCCT+CGG | - | chr4_4:17369568-17369587 | None:intergenic | 45.0% | |
| TTTGTAGGTGAGTACACCTG+CGG | + | chr4_4:17369632-17369651 | Msa0672440:intron | 45.0% | |
| GGTGGTATCTTATGGAAGGA+TGG | + | chr4_4:17369741-17369760 | Msa0672440:CDS | 45.0% | |
| CGAATCCTTAGCATCACTCT+TGG | - | chr4_4:17369853-17369872 | None:intergenic | 45.0% | |
| ACAGAATAACAGCACCTGCA+AGG | - | chr4_4:17369995-17370014 | None:intergenic | 45.0% | |
| ! | CTGATTTAGGATTCTGGGTG+TGG | - | chr4_4:17370373-17370392 | None:intergenic | 45.0% |
| TTCTACCACTGCAACCAGAA+TGG | - | chr4_4:17370461-17370480 | None:intergenic | 45.0% | |
| !! | CACTCTAGGGTTAGGAAAGA+TGG | + | chr4_4:17370493-17370512 | Msa0672440:intron | 45.0% |
| TAGTAACTCGTGAGACTTCC+TGG | + | chr4_4:17370582-17370601 | Msa0672440:intron | 45.0% | |
| CTAGTCTCGAACAACTAACC+AGG | - | chr4_4:17370603-17370622 | None:intergenic | 45.0% | |
| ! | CAAATTTGGAGCAGAGAGCA+AGG | - | chr4_4:17370763-17370782 | None:intergenic | 45.0% |
| CTTGCTCTCTGCTCCAAATT+TGG | + | chr4_4:17370761-17370780 | Msa0672440:intron | 45.0% | |
| !! | GTTTTAACGTAGCAGAGCTC+GGG | + | chr4_4:17370816-17370835 | Msa0672440:intron | 45.0% |
| CACTAGGGTGAAATCAACCT+TGG | - | chr4_4:17370881-17370900 | None:intergenic | 45.0% | |
| ! | ACATCGCATTCAAGGCACTA+GGG | - | chr4_4:17370896-17370915 | None:intergenic | 45.0% |
| AGCAAAGGACATCGCATTCA+AGG | - | chr4_4:17370904-17370923 | None:intergenic | 45.0% | |
| AGCTCTGCTAGTCACTCAAT+TGG | + | chr4_4:17371046-17371065 | Msa0672440:intron | 45.0% | |
| ! | TTCGACTGTCCTTTTAGACC+TGG | - | chr4_4:17371402-17371421 | None:intergenic | 45.0% |
| GTCTAAAAGGACAGTCGAAC+AGG | + | chr4_4:17371403-17371422 | Msa0672440:CDS | 45.0% | |
| CCAGGGTGAAACGTCATATA+TGG | - | chr4_4:17371516-17371535 | None:intergenic | 45.0% | |
| CCATATATGACGTTTCACCC+TGG | + | chr4_4:17371513-17371532 | Msa0672440:CDS | 45.0% | |
| TATATGACGTTTCACCCTGG+AGG | + | chr4_4:17371516-17371535 | Msa0672440:CDS | 45.0% | |
| ! | ACACCTGATTTTTCCCCAAC+AGG | - | chr4_4:17371626-17371645 | None:intergenic | 45.0% |
| GTCTTTGCTACAATCACCTC+CGG | + | chr4_4:17373194-17373213 | Msa0672440:intron | 45.0% | |
| !! | AGCTTGTTACAACCGGTTGA+TGG | - | chr4_4:17373272-17373291 | None:intergenic | 45.0% |
| ! | CAGTTGTTGCTTAGATTCCC+TGG | + | chr4_4:17373729-17373748 | Msa0672440:intron | 45.0% |
| GGAATGGATGACAAAACCCA+GGG | - | chr4_4:17373749-17373768 | None:intergenic | 45.0% | |
| ACTATGTGAAGTGTGGGGAA+TGG | - | chr4_4:17373765-17373784 | None:intergenic | 45.0% | |
| ATACCATGCTTGGGTTAACG+CGG | + | chr4_4:17373851-17373870 | Msa0672440:CDS | 45.0% | |
| GGTTAACGCGGAATTCTTAC+TGG | + | chr4_4:17373863-17373882 | Msa0672440:CDS | 45.0% | |
| CTTACTGGAAAAATGCCTGG+TGG | + | chr4_4:17373878-17373897 | Msa0672440:CDS | 45.0% | |
| !! | AATGAAGCTAGCCTTGGTTC+AGG | + | chr4_4:17373927-17373946 | Msa0672440:three_prime_UTR | 45.0% |
| GGTATAAAGGACCTGAACCA+AGG | - | chr4_4:17373941-17373960 | None:intergenic | 45.0% | |
| GGTCCTTTATACCTCTTCAC+AGG | + | chr4_4:17373948-17373967 | Msa0672440:three_prime_UTR | 45.0% | |
| CCCTCTTCTATTTACTTGCC+AGG | + | chr4_4:17373971-17373990 | Msa0672440:three_prime_UTR | 45.0% | |
| AGGATAGCTTACACTCTACC+AGG | - | chr4_4:17374216-17374235 | None:intergenic | 45.0% | |
| GCCATTGCTTACACTCTACA+AGG | - | chr4_4:17374236-17374255 | None:intergenic | 45.0% | |
| TGTAGAGTGTAAGCAATGGC+TGG | + | chr4_4:17374236-17374255 | Msa0672440:intron | 45.0% | |
| ACATGCACCCTACTTGGAAA+AGG | - | chr4_4:17374321-17374340 | None:intergenic | 45.0% | |
| !! | TGCATGTCATGCGTTGATTC+AGG | + | chr4_4:17374334-17374353 | Msa0672440:three_prime_UTR | 45.0% |
| !!! | TTTTTTTTAATAAAACAATA+TGG | - | chr4_4:17370021-17370040 | None:intergenic | 5.0% |
| GATGTCTAAGCTACGATGCC+CGG | - | chr4_4:17369091-17369110 | None:intergenic | 50.0% | |
| !! | GAGGAGTGTTCGTGCTTCAT+AGG | + | chr4_4:17369567-17369586 | Msa0672440:intron | 50.0% |
| ! | AGCTTGTTTGTTTCCACCGC+AGG | - | chr4_4:17369651-17369670 | None:intergenic | 50.0% |
| ATAACAGCACCTGCAAGGTC+AGG | - | chr4_4:17369990-17370009 | None:intergenic | 50.0% | |
| GGTGTGGTCATGATCCTTCA+AGG | - | chr4_4:17370357-17370376 | None:intergenic | 50.0% | |
| CAGAATCCACTCGAAGATCG+TGG | - | chr4_4:17370438-17370457 | None:intergenic | 50.0% | |
| ! | TCGAGTGGATTCTGCCATTC+TGG | + | chr4_4:17370444-17370463 | Msa0672440:intron | 50.0% |
| ! | TTCTGCCATTCTGGTTGCAG+TGG | + | chr4_4:17370453-17370472 | Msa0672440:intron | 50.0% |
| TCTGCTCCAAATTTGGCCTC+TGG | + | chr4_4:17370768-17370787 | Msa0672440:intron | 50.0% | |
| ! | GACATCGCATTCAAGGCACT+AGG | - | chr4_4:17370897-17370916 | None:intergenic | 50.0% |
| ! | GGATGTGCTCTCCCTACTTT+TGG | + | chr4_4:17371018-17371037 | Msa0672440:intron | 50.0% |
| GCAGCTTCCTAGAAACTTCC+TGG | - | chr4_4:17372147-17372166 | None:intergenic | 50.0% | |
| ! | AGTTTCTAGGAAGCTGCTCG+TGG | + | chr4_4:17372150-17372169 | Msa0672440:intron | 50.0% |
| ! | GTATGAACAGAGGGTGTGCT+TGG | - | chr4_4:17372778-17372797 | None:intergenic | 50.0% |
| GGAATATGTCTCACCGGAGA+AGG | - | chr4_4:17373114-17373133 | None:intergenic | 50.0% | |
| TGTTCATCGGAGGATTCCGA+AGG | - | chr4_4:17373169-17373188 | None:intergenic | 50.0% | |
| CTGGAAAGTTGTGGTGCAAC+CGG | - | chr4_4:17373216-17373235 | None:intergenic | 50.0% | |
| GGGCTGTATCTGGAAAGTTG+TGG | - | chr4_4:17373225-17373244 | None:intergenic | 50.0% | |
| AGAAACAGCAGGGCTGTATC+TGG | - | chr4_4:17373235-17373254 | None:intergenic | 50.0% | |
| GGGAATGGATGACAAAACCC+AGG | - | chr4_4:17373750-17373769 | None:intergenic | 50.0% | |
| ATTCCGCGTTAACCCAAGCA+TGG | - | chr4_4:17373857-17373876 | None:intergenic | 50.0% | |
| ! | AAAATGCCTGGTGGGTACCT+TGG | + | chr4_4:17373887-17373906 | Msa0672440:CDS | 50.0% |
| ! | TTTCATCCAAGGTACCCACC+AGG | - | chr4_4:17373896-17373915 | None:intergenic | 50.0% |
| ! | GGGCCTGTGAAGAGGTATAA+AGG | - | chr4_4:17373954-17373973 | None:intergenic | 50.0% |
| ATAGAAGAGGGCCTGTGAAG+AGG | - | chr4_4:17373962-17373981 | None:intergenic | 50.0% | |
| ! | AGCTCAGGCCTTTTCCAAGT+AGG | + | chr4_4:17374310-17374329 | Msa0672440:three_prime_UTR | 50.0% |
| ! | GCTCAGGCCTTTTCCAAGTA+GGG | + | chr4_4:17374311-17374330 | Msa0672440:three_prime_UTR | 50.0% |
| CTTAGACACGGACACCGACA+CGG | + | chr4_4:17368946-17368965 | Msa0672440:intron | 55.0% | |
| TCCTGATGTCGGACAGGTGT+CGG | - | chr4_4:17369054-17369073 | None:intergenic | 55.0% | |
| GCACGAACACTCCTCGGATT+AGG | - | chr4_4:17369562-17369581 | None:intergenic | 55.0% | |
| CGAACTCATCCTGACCTTGC+AGG | + | chr4_4:17369978-17369997 | Msa0672440:CDS | 55.0% | |
| TGCAGTGGTAGAAGTCGCGA+CGG | + | chr4_4:17370468-17370487 | Msa0672440:intron | 55.0% | |
| AAGGGGCGGGAGAAGAAACA+GGG | - | chr4_4:17370964-17370983 | None:intergenic | 55.0% | |
| TAAGGGGCGGGAGAAGAAAC+AGG | - | chr4_4:17370965-17370984 | None:intergenic | 55.0% | |
| AATTCAGTGGCAGCCGACAG+TGG | + | chr4_4:17372672-17372691 | Msa0672440:intron | 55.0% | |
| GCGAGCTTTCGTACCACTGT+CGG | - | chr4_4:17372688-17372707 | None:intergenic | 55.0% | |
| ACAACCAGTTGCGCCTTCTC+CGG | + | chr4_4:17373098-17373117 | Msa0672440:intron | 55.0% | |
| TCATCGGAGGATTCCGAAGG+TGG | - | chr4_4:17373166-17373185 | None:intergenic | 55.0% | |
| GAAAGTTGTGGTGCAACCGG+AGG | - | chr4_4:17373213-17373232 | None:intergenic | 55.0% | |
| CGCATGACATGCACCCTACT+TGG | - | chr4_4:17374327-17374346 | None:intergenic | 55.0% | |
| !! | TGTCGGACAGGTGTCGGTGT+CGG | - | chr4_4:17369048-17369067 | None:intergenic | 60.0% |
| ACCGACACCTGTCCGACATC+AGG | + | chr4_4:17369050-17369069 | Msa0672440:intron | 60.0% | |
| CTCCTCGGGTGTCCTGATGT+CGG | - | chr4_4:17369065-17369084 | None:intergenic | 60.0% | |
| TACGATGCCCGGACACTCCT+CGG | - | chr4_4:17369080-17369099 | None:intergenic | 60.0% | |
| GACACGACACGCCTAATCCG+AGG | + | chr4_4:17369548-17369567 | Msa0672440:intron | 60.0% | |
| GTAGGTGAGTACACCTGCGG+TGG | + | chr4_4:17369635-17369654 | Msa0672440:intron | 60.0% | |
| GGAACTTTGGCCCGAACCGT+TGG | - | chr4_4:17369915-17369934 | None:intergenic | 60.0% | |
| !! | CGGTGTCGGTGTGTCCGTGT+CGG | - | chr4_4:17368963-17368982 | None:intergenic | 65.0% |
| CGACACGGACACACCGACAC+CGG | + | chr4_4:17368961-17368980 | Msa0672440:intron | 65.0% | |
| CGGGTGTCCTGATGTCGGAC+AGG | - | chr4_4:17369060-17369079 | None:intergenic | 65.0% | |
| GTCCGACATCAGGACACCCG+AGG | + | chr4_4:17369060-17369079 | Msa0672440:intron | 65.0% | |
| !! | CAGGACACCCGAGGAGTGTC+CGG | + | chr4_4:17369069-17369088 | Msa0672440:intron | 65.0% |
| !! | AGGACACCCGAGGAGTGTCC+GGG | + | chr4_4:17369070-17369089 | Msa0672440:intron | 65.0% |
| ACGATGCCCGGACACTCCTC+GGG | - | chr4_4:17369079-17369098 | None:intergenic | 65.0% | |
| AAGTCGCGACGGCGCACTCT+AGG | + | chr4_4:17370479-17370498 | Msa0672440:intron | 65.0% | |
| AGTCGCGACGGCGCACTCTA+GGG | + | chr4_4:17370480-17370499 | Msa0672440:intron | 65.0% | |
| !! | CGACGGCGCACTCTAGGGTT+AGG | + | chr4_4:17370485-17370504 | Msa0672440:intron | 65.0% |
| ! | CTCACCGGAGAAGGCGCAAC+TGG | - | chr4_4:17373105-17373124 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 17368833 | 17374359 | 17368833 | ID=Msa0672440;Name=Msa0672440 |
| chr4_4 | mRNA | 17368833 | 17374359 | 17368833 | ID=Msa0672440-mRNA-1;Parent=Msa0672440;Name=Msa0672440-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.4|0.5|1|0.2|0.16|6|416|176 |
| chr4_4 | exon | 17368833 | 17368839 | 17368833 | ID=Msa0672440-mRNA-1:exon:5080;Parent=Msa0672440-mRNA-1 |
| chr4_4 | exon | 17369679 | 17369814 | 17369679 | ID=Msa0672440-mRNA-1:exon:5081;Parent=Msa0672440-mRNA-1 |
| chr4_4 | exon | 17369824 | 17369999 | 17369824 | ID=Msa0672440-mRNA-1:exon:5082;Parent=Msa0672440-mRNA-1 |
| chr4_4 | exon | 17371403 | 17371537 | 17371403 | ID=Msa0672440-mRNA-1:exon:5083;Parent=Msa0672440-mRNA-1 |
| chr4_4 | exon | 17373847 | 17374216 | 17373847 | ID=Msa0672440-mRNA-1:exon:5084;Parent=Msa0672440-mRNA-1 |
| chr4_4 | exon | 17374237 | 17374359 | 17374237 | ID=Msa0672440-mRNA-1:exon:5085;Parent=Msa0672440-mRNA-1 |
| chr4_4 | CDS | 17368833 | 17368839 | 17368833 | ID=Msa0672440-mRNA-1:cds;Parent=Msa0672440-mRNA-1 |
| chr4_4 | CDS | 17369679 | 17369814 | 17369679 | ID=Msa0672440-mRNA-1:cds;Parent=Msa0672440-mRNA-1 |
| chr4_4 | CDS | 17369824 | 17369999 | 17369824 | ID=Msa0672440-mRNA-1:cds;Parent=Msa0672440-mRNA-1 |
| chr4_4 | CDS | 17371403 | 17371537 | 17371403 | ID=Msa0672440-mRNA-1:cds;Parent=Msa0672440-mRNA-1 |
| chr4_4 | CDS | 17373847 | 17373923 | 17373847 | ID=Msa0672440-mRNA-1:cds;Parent=Msa0672440-mRNA-1 |
| chr4_4 | three_prime_UTR | 17373924 | 17374216 | 17373924 | ID=Msa0672440-mRNA-1:three_prime_utr;Parent=Msa0672440-mRNA-1 |
| chr4_4 | three_prime_UTR | 17374237 | 17374359 | 17374237 | ID=Msa0672440-mRNA-1:three_prime_utr;Parent=Msa0672440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
