Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0676280 | XP_013442808.1 | 85.052 | 194 | 9 | 2 | 3 | 176 | 25 | 218 | 1.80e-102 | 303 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0676280 | sp|Q9LXD1|RLF_ARATH | 52.041 | 196 | 61 | 5 | 6 | 176 | 18 | 205 | 2.49e-60 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0676280 | A0A072TIW3 | 85.052 | 194 | 9 | 2 | 3 | 176 | 25 | 218 | 8.60e-103 | 303 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005270 | Msa0676280 | 0.803758 | 2.991621e-49 | -8.615850e-47 |
| Msa0020410 | Msa0676280 | 0.801769 | 7.701016e-49 | -8.615850e-47 |
| Msa0026910 | Msa0676280 | 0.807982 | 3.873715e-50 | -8.615850e-47 |
| Msa0030300 | Msa0676280 | 0.805605 | 1.231238e-49 | -8.615850e-47 |
| Msa0043980 | Msa0676280 | 0.833905 | 4.075924e-56 | -8.615850e-47 |
| Msa0051750 | Msa0676280 | 0.805318 | 1.414338e-49 | -8.615850e-47 |
| Msa0071250 | Msa0676280 | 0.822590 | 2.183295e-53 | -8.615850e-47 |
| Msa0090550 | Msa0676280 | 0.811440 | 6.992509e-51 | -8.615850e-47 |
| Msa0104230 | Msa0676280 | 0.813196 | 2.892699e-51 | -8.615850e-47 |
| Msa0104800 | Msa0676280 | 0.838478 | 2.808724e-57 | -8.615850e-47 |
| Msa0620330 | Msa0676280 | 0.816672 | 4.900785e-52 | -8.615850e-47 |
| Msa0654620 | Msa0676280 | 0.826563 | 2.533299e-54 | -8.615850e-47 |
| Msa0672440 | Msa0676280 | 0.936333 | 2.052948e-97 | -8.615850e-47 |
| Msa0676280 | Msa0680480 | 0.800724 | 1.260322e-48 | -8.615850e-47 |
| Msa0676280 | Msa0705990 | 0.828639 | 8.037573e-55 | -8.615850e-47 |
| Msa0676280 | Msa0709160 | 0.801934 | 7.122331e-49 | -8.615850e-47 |
| Msa0676280 | Msa0721340 | 0.816811 | 4.562437e-52 | -8.615850e-47 |
| Msa0676280 | Msa0726080 | 0.833582 | 4.910464e-56 | -8.615850e-47 |
| Msa0676280 | Msa0742150 | 0.806412 | 8.330018e-50 | -8.615850e-47 |
| Msa0676280 | Msa0750850 | 0.803268 | 3.780790e-49 | -8.615850e-47 |
| Msa0676280 | Msa0765180 | 0.830968 | 2.177524e-55 | -8.615850e-47 |
| Msa0676280 | Msa0773590 | 0.820213 | 7.723499e-53 | -8.615850e-47 |
| Msa0676280 | Msa0801730 | 0.804741 | 1.867838e-49 | -8.615850e-47 |
| Msa0676280 | Msa0811040 | 0.822089 | 2.853678e-53 | -8.615850e-47 |
| Msa0676280 | Msa0831850 | 0.810323 | 1.220285e-50 | -8.615850e-47 |
| Msa0676280 | Msa0842770 | 0.814206 | 1.733508e-51 | -8.615850e-47 |
| Msa0676280 | Msa0846230 | 0.839928 | 1.181424e-57 | -8.615850e-47 |
| Msa0676280 | Msa0865030 | 0.803362 | 3.614271e-49 | -8.615850e-47 |
| Msa0676280 | Msa0880810 | 0.800618 | 1.324686e-48 | -8.615850e-47 |
| Msa0676280 | Msa0980880 | 0.839847 | 1.240517e-57 | -8.615850e-47 |
| Msa0676280 | Msa1001390 | 0.802647 | 5.081105e-49 | -8.615850e-47 |
| Msa0676280 | Msa1063420 | 0.813847 | 2.080838e-51 | -8.615850e-47 |
| Msa0676280 | Msa1063510 | 0.816828 | 4.522069e-52 | -8.615850e-47 |
| Msa0676280 | Msa1071320 | 0.800599 | 1.336331e-48 | -8.615850e-47 |
| Msa0676280 | Msa1077340 | 0.813607 | 2.350031e-51 | -8.615850e-47 |
| Msa0676280 | Msa1084270 | 0.807318 | 5.359065e-50 | -8.615850e-47 |
| Msa0676280 | Msa1114590 | 0.802505 | 5.435672e-49 | -8.615850e-47 |
| Msa0676280 | Msa1115280 | 0.815103 | 1.097251e-51 | -8.615850e-47 |
| Msa0676280 | Msa1143020 | 0.827451 | 1.553580e-54 | -8.615850e-47 |
| Msa0676280 | Msa1144040 | 0.802331 | 5.902853e-49 | -8.615850e-47 |
| Msa0676280 | Msa1178580 | 0.800801 | 1.215632e-48 | -8.615850e-47 |
| Msa0676280 | Msa1202660 | 0.803382 | 3.579696e-49 | -8.615850e-47 |
| Msa0676280 | Msa1207310 | 0.825332 | 4.965674e-54 | -8.615850e-47 |
| Msa0676280 | Msa1207350 | 0.815031 | 1.138314e-51 | -8.615850e-47 |
| Msa0676280 | Msa1208380 | 0.807756 | 4.325815e-50 | -8.615850e-47 |
| Msa0676280 | Msa1233850 | 0.807972 | 3.892885e-50 | -8.615850e-47 |
| Msa0676280 | Msa1250110 | 0.819108 | 1.380703e-52 | -8.615850e-47 |
| Msa0676280 | Msa1270660 | 0.814913 | 1.209143e-51 | -8.615850e-47 |
| Msa0676280 | Msa1270730 | 0.800368 | 1.489538e-48 | -8.615850e-47 |
| Msa0676280 | Msa1295330 | 0.812686 | 3.741867e-51 | -8.615850e-47 |
| Msa0676280 | Msa1307180 | 0.834525 | 2.850170e-56 | -8.615850e-47 |
| Msa0676280 | Msa1315750 | 0.861110 | 1.291756e-63 | -8.615850e-47 |
| Msa0676280 | Msa1316360 | 0.817995 | 2.469576e-52 | -8.615850e-47 |
| Msa0676280 | Msa1316440 | 0.805751 | 1.147281e-49 | -8.615850e-47 |
| Msa0676280 | Msa1328520 | 0.800659 | 1.298929e-48 | -8.615850e-47 |
| Msa0676280 | Msa1331320 | 0.816070 | 6.682954e-52 | -8.615850e-47 |
| Msa0676280 | Msa1370590 | 0.813859 | 2.068271e-51 | -8.615850e-47 |
| Msa0676280 | Msa1371240 | 0.818275 | 2.133521e-52 | -8.615850e-47 |
| Msa0676280 | Msa1384100 | 0.811648 | 6.301882e-51 | -8.615850e-47 |
| Msa0676280 | Msa1407190 | 0.813160 | 2.945266e-51 | -8.615850e-47 |
| Msa0676280 | Msa1423820 | 0.802773 | 4.785973e-49 | -8.615850e-47 |
| Msa0676280 | Msa1428780 | 0.804119 | 2.516675e-49 | -8.615850e-47 |
| Msa0676280 | Msa1432130 | 0.804607 | 1.992180e-49 | -8.615850e-47 |
| Msa0676280 | Msa1442790 | 0.805513 | 1.287156e-49 | -8.615850e-47 |
| Msa0676280 | Msa1444120 | 0.802627 | 5.129346e-49 | -8.615850e-47 |
| Msa0676280 | Msa1462290 | 0.800440 | 1.439648e-48 | -8.615850e-47 |
| Msa0676280 | Msa1463900 | 0.808246 | 3.402545e-50 | -8.615850e-47 |
| Msa0676280 | Msa1465610 | -0.801508 | 8.710079e-49 | -8.615850e-47 |
| Msa0124550 | Msa0676280 | 0.807211 | 5.646423e-50 | -8.615850e-47 |
| Msa0138020 | Msa0676280 | 0.839837 | 1.247470e-57 | -8.615850e-47 |
| Msa0142500 | Msa0676280 | 0.808868 | 2.506498e-50 | -8.615850e-47 |
| Msa0150230 | Msa0676280 | 0.809564 | 1.778061e-50 | -8.615850e-47 |
| Msa0151180 | Msa0676280 | 0.817269 | 3.599095e-52 | -8.615850e-47 |
| Msa0173390 | Msa0676280 | 0.804570 | 2.027084e-49 | -8.615850e-47 |
| Msa0186950 | Msa0676280 | 0.801104 | 1.053873e-48 | -8.615850e-47 |
| Msa0197610 | Msa0676280 | 0.826787 | 2.239677e-54 | -8.615850e-47 |
| Msa0202930 | Msa0676280 | 0.813658 | 2.289338e-51 | -8.615850e-47 |
| Msa0207030 | Msa0676280 | 0.823287 | 1.502445e-53 | -8.615850e-47 |
| Msa0380100 | Msa0676280 | 0.814405 | 1.566591e-51 | -8.615850e-47 |
| Msa0422180 | Msa0676280 | 0.826147 | 3.181784e-54 | -8.615850e-47 |
| Msa0427580 | Msa0676280 | 0.801426 | 9.053095e-49 | -8.615850e-47 |
| Msa0435220 | Msa0676280 | 0.800676 | 1.288979e-48 | -8.615850e-47 |
| Msa0481280 | Msa0676280 | 0.804166 | 2.461405e-49 | -8.615850e-47 |
| Msa0482040 | Msa0676280 | 0.801270 | 9.744886e-49 | -8.615850e-47 |
| Msa0240270 | Msa0676280 | 0.822588 | 2.185938e-53 | -8.615850e-47 |
| Msa0262370 | Msa0676280 | 0.827090 | 1.895072e-54 | -8.615850e-47 |
| Msa0284450 | Msa0676280 | 0.863851 | 1.852403e-64 | -8.615850e-47 |
| Msa0285330 | Msa0676280 | 0.853535 | 2.240800e-61 | -8.615850e-47 |
| Msa0287410 | Msa0676280 | 0.801314 | 9.546197e-49 | -8.615850e-47 |
| Msa0291500 | Msa0676280 | 0.807701 | 4.444647e-50 | -8.615850e-47 |
| Msa0300150 | Msa0676280 | 0.815190 | 1.049695e-51 | -8.615850e-47 |
| Msa0326110 | Msa0676280 | 0.800832 | 1.197772e-48 | -8.615850e-47 |
| Msa0326750 | Msa0676280 | 0.815396 | 9.443854e-52 | -8.615850e-47 |
| Msa0336250 | Msa0676280 | 0.804433 | 2.165576e-49 | -8.615850e-47 |
| Msa0337590 | Msa0676280 | 0.810473 | 1.132689e-50 | -8.615850e-47 |
| Msa0482940 | Msa0676280 | 0.808278 | 3.350370e-50 | -8.615850e-47 |
| Msa0518170 | Msa0676280 | 0.827332 | 1.658507e-54 | -8.615850e-47 |
| Msa0518380 | Msa0676280 | 0.815482 | 9.038472e-52 | -8.615850e-47 |
| Msa0532980 | Msa0676280 | 0.810768 | 9.781673e-51 | -8.615850e-47 |
| Msa0548930 | Msa0676280 | 0.956461 | 2.796440e-114 | -8.615850e-47 |
| Msa0564850 | Msa0676280 | 0.800149 | 1.650161e-48 | -8.615850e-47 |
| Msa0566350 | Msa0676280 | 0.816187 | 6.292154e-52 | -8.615850e-47 |
| Msa0566750 | Msa0676280 | 0.808156 | 3.557334e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0676280 | MtrunA17_Chr4g0019781 | 85.052 | 194 | 9 | 2 | 3 | 176 | 25 | 218 | 1.66e-106 | 303 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0676280 | AT5G09680.1 | 52.041 | 196 | 61 | 5 | 6 | 176 | 18 | 205 | 2.53e-61 | 189 |
| Msa0676280 | AT5G09680.2 | 52.041 | 196 | 61 | 5 | 6 | 176 | 18 | 205 | 2.53e-61 | 189 |
| Msa0676280 | AT5G09680.3 | 52.041 | 196 | 61 | 5 | 6 | 176 | 64 | 251 | 4.71e-61 | 190 |
Find 60 sgRNAs with CRISPR-Local
Find 325 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGAGGATTCTTCCTTTA+TGG | 0.134703 | 4_4:+26729913 | None:intergenic |
| GGTTAACGCGGAATTCTTAC+TGG | 0.266085 | 4_4:-26725727 | Msa0676280:CDS |
| AGTACAGTTGTTCTGTAATC+TGG | 0.281609 | 4_4:-26725497 | Msa0676280:three_prime_UTR |
| ACAATAATGGTGGTATCTTA+TGG | 0.283733 | 4_4:-26729874 | Msa0676280:CDS |
| TGCATGTCATGCGTTGATTC+AGG | 0.285598 | 4_4:-26725256 | Msa0676280:three_prime_UTR |
| AATTGTTTAGAATGTTCATT+TGG | 0.289941 | 4_4:-26725321 | Msa0676280:three_prime_UTR |
| CCAGGAGTCATTATTCAATA+AGG | 0.293311 | 4_4:-26725601 | Msa0676280:three_prime_UTR |
| TAGAATGTTCATTTGGGTTA+TGG | 0.308604 | 4_4:-26725314 | Msa0676280:three_prime_UTR |
| GTTACTACTGCTTGCATTTG+AGG | 0.317183 | 4_4:+26729898 | None:intergenic |
| TGATTCTTCAAACTCTAAAA+AGG | 0.332088 | 4_4:-26729834 | Msa0676280:CDS |
| CCCTCTTCTATTTACTTGCC+AGG | 0.340284 | 4_4:-26725619 | Msa0676280:three_prime_UTR |
| CGCATGACATGCACCCTACT+TGG | 0.351667 | 4_4:+26725266 | None:intergenic |
| TCTGATTAAAGAATCCCTAT+TGG | 0.352797 | 4_4:-26725540 | Msa0676280:three_prime_UTR |
| CCAGGGTGAAACGTCATATA+TGG | 0.357413 | 4_4:+26728094 | None:intergenic |
| ATTGTATGACGAACTCCAAT+AGG | 0.360769 | 4_4:+26725525 | None:intergenic |
| TATCAGATAAATACCATGCT+TGG | 0.376980 | 4_4:-26725749 | Msa0676280:intron |
| CGAACTCATCCTGACCTTGC+AGG | 0.392085 | 4_4:-26729629 | Msa0676280:intron |
| GAACAGGAGACTAATTTCTA+TGG | 0.394765 | 4_4:-26728188 | Msa0676280:CDS |
| GTCTAAAAGGACAGTCGAAC+AGG | 0.400231 | 4_4:-26728204 | Msa0676280:CDS |
| TATGTTGATCCAGGTCTAAA+AGG | 0.419525 | 4_4:-26728217 | Msa0676280:intron |
| ATCAGATAAATACCATGCTT+GGG | 0.425755 | 4_4:-26725748 | Msa0676280:intron |
| AGCAGTAGTAACAACAATAA+TGG | 0.427293 | 4_4:-26729887 | Msa0676280:CDS |
| TGAAAAGGGTTATAGTCAAA+TGG | 0.427823 | 4_4:-26729669 | Msa0676280:CDS |
| GGGCCTGTGAAGAGGTATAA+AGG | 0.429978 | 4_4:+26725639 | None:intergenic |
| ATTGTTTAGAATGTTCATTT+GGG | 0.452245 | 4_4:-26725320 | Msa0676280:three_prime_UTR |
| AATCGCGGATATTTCCATAA+AGG | 0.455333 | 4_4:-26729927 | Msa0676280:CDS |
| AATGAAGCTAGCCTTGGTTC+AGG | 0.458888 | 4_4:-26725663 | Msa0676280:three_prime_UTR |
| ATAACAGCACCTGCAAGGTC+AGG | 0.484107 | 4_4:+26729620 | None:intergenic |
| CGAATCCTTAGCATCACTCT+TGG | 0.489419 | 4_4:+26729757 | None:intergenic |
| TTGTATGACGAACTCCAATA+GGG | 0.490897 | 4_4:+26725526 | None:intergenic |
| CCTTATTGAATAATGACTCC+TGG | 0.499448 | 4_4:+26725601 | None:intergenic |
| GGTCCTTTATACCTCTTCAC+AGG | 0.505118 | 4_4:-26725642 | Msa0676280:three_prime_UTR |
| GGAACTTTGGCCCGAACCGT+TGG | 0.513323 | 4_4:+26729695 | None:intergenic |
| ACATGCACCCTACTTGGAAA+AGG | 0.516185 | 4_4:+26725272 | None:intergenic |
| GGTGGTATCTTATGGAAGGA+TGG | 0.518034 | 4_4:-26729866 | Msa0676280:CDS |
| AGGGTTATAGTCAAATGGAT+TGG | 0.535477 | 4_4:-26729664 | Msa0676280:CDS |
| AAAATGCCTGGTGGGTACCT+TGG | 0.553044 | 4_4:-26725703 | Msa0676280:CDS |
| TGTAGAGTGTAAGCAATGGC+TGG | 0.562076 | 4_4:-26725354 | Msa0676280:three_prime_UTR |
| TGAAGAAATGAAGCTAGCCT+TGG | 0.566041 | 4_4:-26725669 | Msa0676280:three_prime_UTR |
| ATCAACCAAGAGTGATGCTA+AGG | 0.568914 | 4_4:-26729762 | Msa0676280:CDS |
| GTTAGAAAGCACAAAACAGA+AGG | 0.581274 | 4_4:-26728160 | Msa0676280:CDS |
| TTCTGTTCTGACAACTTCTG+AGG | 0.595702 | 4_4:+26729734 | None:intergenic |
| TAATGGTGGTATCTTATGGA+AGG | 0.596595 | 4_4:-26729870 | Msa0676280:CDS |
| ATAGAAGAGGGCCTGTGAAG+AGG | 0.600977 | 4_4:+26725631 | None:intergenic |
| TCCTGGCAAGTAAATAGAAG+AGG | 0.605633 | 4_4:+26725618 | None:intergenic |
| TCTTCACTGACTTTCATCCA+AGG | 0.610470 | 4_4:+26725686 | None:intergenic |
| CAAGCTTGTTTCAGAAATCG+CGG | 0.617791 | 4_4:-26729942 | Msa0676280:intron |
| CCATATATGACGTTTCACCC+TGG | 0.621706 | 4_4:-26728094 | Msa0676280:CDS |
| CCTGGCAAGTAAATAGAAGA+GGG | 0.631704 | 4_4:+26725619 | None:intergenic |
| ACAGAATAACAGCACCTGCA+AGG | 0.634591 | 4_4:+26729615 | None:intergenic |
| AGTAGTAACAACAATAATGG+TGG | 0.644225 | 4_4:-26729884 | Msa0676280:CDS |
| GGTATAAAGGACCTGAACCA+AGG | 0.652448 | 4_4:+26725652 | None:intergenic |
| TCCTTGTAGAGTGTAAGCAA+TGG | 0.655152 | 4_4:-26725358 | Msa0676280:intron |
| ATTCCGCGTTAACCCAAGCA+TGG | 0.657038 | 4_4:+26725736 | None:intergenic |
| ATACCATGCTTGGGTTAACG+CGG | 0.662040 | 4_4:-26725739 | Msa0676280:CDS |
| ACAAAACAGAAGGTGAAATG+TGG | 0.673732 | 4_4:-26728150 | Msa0676280:CDS |
| ATGGTGATATATTGTAGACA+CGG | 0.675806 | 4_4:+26728113 | None:intergenic |
| TTTCATCCAAGGTACCCACC+AGG | 0.678591 | 4_4:+26725697 | None:intergenic |
| TATATGACGTTTCACCCTGG+AGG | 0.704322 | 4_4:-26728091 | Msa0676280:intron |
| GAAATGTGGACTGTATTGAA+AGG | 0.710255 | 4_4:-26728136 | Msa0676280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTCTAAATTATATCAA+AGG | + | chr4_4:26725837-26725856 | None:intergenic | 10.0% |
| !! | AAAAAATATTTAAAAAGTGA+GGG | + | chr4_4:26727265-26727284 | None:intergenic | 10.0% |
| !! | AAAAAAATATTTAAAAAGTG+AGG | + | chr4_4:26727266-26727285 | None:intergenic | 10.0% |
| !!! | TCACTTTTTAAATATTTTTT+TGG | - | chr4_4:26727265-26727284 | Msa0676280:intron | 10.0% |
| !! | TTTCTAAATAATACAAATTT+GGG | + | chr4_4:26729910-26729929 | None:intergenic | 10.0% |
| !! | ATTTCTAAATAATACAAATT+TGG | + | chr4_4:26729911-26729930 | None:intergenic | 10.0% |
| !!! | TAAAAACAATAGATTTTCAT+TGG | - | chr4_4:26725753-26725772 | Msa0676280:intron | 15.0% |
| !! | AAAAATATTTAAAAAGTGAG+GGG | + | chr4_4:26727264-26727283 | None:intergenic | 15.0% |
| !! | TATAGTTATGTACATATAAA+TGG | + | chr4_4:26727641-26727660 | None:intergenic | 15.0% |
| !!! | TTACAATTTTTAAGAATAAG+AGG | - | chr4_4:26727764-26727783 | Msa0676280:intron | 15.0% |
| !! | TAAATCCTAATATAAATATC+AGG | + | chr4_4:26728332-26728351 | None:intergenic | 15.0% |
| !! | TATTAGGATTTAAATTGATT+AGG | - | chr4_4:26728340-26728359 | Msa0676280:intron | 15.0% |
| !! | ACTTCTTAGAAAAAATTAAT+TGG | + | chr4_4:26728615-26728634 | None:intergenic | 15.0% |
| !!! | GTTACACATTTTTTTTTATA+TGG | - | chr4_4:26728866-26728885 | Msa0676280:intron | 15.0% |
| !! | TTGTATTATTTAGAAATTGA+AGG | - | chr4_4:26729914-26729933 | Msa0676280:CDS | 15.0% |
| !!! | TCATTTTCTCAAATTATTAC+CGG | + | chr4_4:26725403-26725422 | None:intergenic | 20.0% |
| !!! | GTTTACTTAGTATATTTTGT+TGG | - | chr4_4:26725630-26725649 | Msa0676280:three_prime_UTR | 20.0% |
| !!! | CTAATTTAAAATGACTTTGT+AGG | - | chr4_4:26726037-26726056 | Msa0676280:intron | 20.0% |
| !! | GATTAGATATTATTAGAACT+TGG | + | chr4_4:26726642-26726661 | None:intergenic | 20.0% |
| !! | AGAAAAAAGAATGGAATTAA+GGG | + | chr4_4:26727402-26727421 | None:intergenic | 20.0% |
| !! | AAGAAAAAAGAATGGAATTA+AGG | + | chr4_4:26727403-26727422 | None:intergenic | 20.0% |
| !!! | TTTCTTTTCACTTCAATTAA+CGG | - | chr4_4:26727417-26727436 | Msa0676280:intron | 20.0% |
| !! | AAAGAAAGCTAACATTTATA+AGG | + | chr4_4:26727514-26727533 | None:intergenic | 20.0% |
| !! | CAAACTTAAATAATACAGTA+CGG | + | chr4_4:26728133-26728152 | None:intergenic | 20.0% |
| !! | CAATTCCTGATATTTATATT+AGG | - | chr4_4:26728324-26728343 | Msa0676280:intron | 20.0% |
| !! | ATGTGCTATATTATTTATAG+AGG | - | chr4_4:26728410-26728429 | Msa0676280:intron | 20.0% |
| !! | TTCTATTACAAACATAAACA+GGG | + | chr4_4:26728532-26728551 | None:intergenic | 20.0% |
| !! | TTTCTATTACAAACATAAAC+AGG | + | chr4_4:26728533-26728552 | None:intergenic | 20.0% |
| !! | GTTTATGTTTGTAATAGAAA+TGG | - | chr4_4:26728533-26728552 | Msa0676280:intron | 20.0% |
| !! | TCTTAGAAAAAATTAATTGG+CGG | + | chr4_4:26728612-26728631 | None:intergenic | 20.0% |
| !! | TTCTATTATATACACAAACA+AGG | - | chr4_4:26729013-26729032 | Msa0676280:intron | 20.0% |
| !!! | AATATTTTAGATCTATGTGA+AGG | + | chr4_4:26729068-26729087 | None:intergenic | 20.0% |
| !!! | TGATTTTAGCATTAACTTAT+TGG | - | chr4_4:26729460-26729479 | Msa0676280:intron | 20.0% |
| !! | TTATGAATATGAATCTATGA+TGG | + | chr4_4:26729580-26729599 | None:intergenic | 20.0% |
| !! | GTGTTAGAATAAAAAAATAG+AGG | - | chr4_4:26729760-26729779 | Msa0676280:CDS | 20.0% |
| !!! | TTAACAAACACATTTTAAGT+AGG | + | chr4_4:26729972-26729991 | None:intergenic | 20.0% |
| !! | TTTATCTGATAAAGAGATTA+AGG | + | chr4_4:26730269-26730288 | None:intergenic | 20.0% |
| !!! | AATTGTTTAGAATGTTCATT+TGG | - | chr4_4:26730706-26730725 | Msa0676280:intron | 20.0% |
| !!! | ATTGTTTAGAATGTTCATTT+GGG | - | chr4_4:26730707-26730726 | Msa0676280:intron | 20.0% |
| ! | AAATGGAAATGAAAAAAGAG+AGG | + | chr4_4:26725297-26725316 | None:intergenic | 25.0% |
| ! | ATGTAGAAATATCTTAGACA+CGG | - | chr4_4:26725354-26725373 | Msa0676280:three_prime_UTR | 25.0% |
| ! | ACATAATTCAGTGTAATCAT+AGG | - | chr4_4:26725422-26725441 | Msa0676280:three_prime_UTR | 25.0% |
| !!! | TTGTTTTTATCTATGAAGCA+TGG | - | chr4_4:26725860-26725879 | Msa0676280:intron | 25.0% |
| !!! | TTTTAAATTAGAAGAGCACA+TGG | + | chr4_4:26726028-26726047 | None:intergenic | 25.0% |
| !! | TGATTCTTCAAACTCTAAAA+AGG | - | chr4_4:26726193-26726212 | Msa0676280:intron | 25.0% |
| !! | TTCAAGTATTGTCAACAATA+TGG | + | chr4_4:26726482-26726501 | None:intergenic | 25.0% |
| ! | AGTTGAAAAATGAATATGTG+TGG | - | chr4_4:26726531-26726550 | Msa0676280:intron | 25.0% |
| ! | TATCATACTATCATAAGCAT+TGG | + | chr4_4:26726595-26726614 | None:intergenic | 25.0% |
| ! | TAGATATTATTAGAACTTGG+AGG | + | chr4_4:26726639-26726658 | None:intergenic | 25.0% |
| ! | TAATATCTAATCCCAATTGT+TGG | - | chr4_4:26726650-26726669 | Msa0676280:intron | 25.0% |
| !! | ATTTTACGTATAATCCGTAA+GGG | + | chr4_4:26727146-26727165 | None:intergenic | 25.0% |
| !! | TTTTTGGATATTTCTTTCCA+AGG | - | chr4_4:26727281-26727300 | Msa0676280:intron | 25.0% |
| ! | GAAAAAAGAATGGAATTAAG+GGG | + | chr4_4:26727401-26727420 | None:intergenic | 25.0% |
| ! | GAAGTGAAAAGAAAAAAGAA+TGG | + | chr4_4:26727411-26727430 | None:intergenic | 25.0% |
| ! | TGTACATAACTATATATCAG+AGG | - | chr4_4:26727647-26727666 | Msa0676280:intron | 25.0% |
| !!! | TTGTACTTGTTTTGTTATGT+TGG | - | chr4_4:26727680-26727699 | Msa0676280:intron | 25.0% |
| ! | ATTATATATGCATTTCCTGT+TGG | - | chr4_4:26728028-26728047 | Msa0676280:intron | 25.0% |
| ! | TTATATATGCATTTCCTGTT+GGG | - | chr4_4:26728029-26728048 | Msa0676280:intron | 25.0% |
| ! | TAGAAACAAACAAATGAAGT+AGG | + | chr4_4:26728160-26728179 | None:intergenic | 25.0% |
| ! | ACGAAAAGCTAAATATTCAA+TGG | + | chr4_4:26728197-26728216 | None:intergenic | 25.0% |
| !!! | TTTTCTAAGAAGTTTCTGTA+AGG | - | chr4_4:26728622-26728641 | Msa0676280:intron | 25.0% |
| !! | TGGCAAACATAATAAACTTT+TGG | - | chr4_4:26728886-26728905 | Msa0676280:intron | 25.0% |
| !!! | ACATAATAAACTTTTGGTTG+AGG | - | chr4_4:26728892-26728911 | Msa0676280:intron | 25.0% |
| !! | ATGATTTGTCATGTTTACTT+AGG | - | chr4_4:26728947-26728966 | Msa0676280:intron | 25.0% |
| ! | CTATTATAAGTATGAACAGA+GGG | + | chr4_4:26729224-26729243 | None:intergenic | 25.0% |
| ! | TCTATTATAAGTATGAACAG+AGG | + | chr4_4:26729225-26729244 | None:intergenic | 25.0% |
| ! | TTGGTTTATTAACACAAACA+AGG | - | chr4_4:26729479-26729498 | Msa0676280:intron | 25.0% |
| !! | ATGAATCTATGATGGTTTTT+AGG | + | chr4_4:26729572-26729591 | None:intergenic | 25.0% |
| !! | CTTAAAATGTGTTTGTTAAG+TGG | - | chr4_4:26729973-26729992 | Msa0676280:intron | 25.0% |
| ! | GGATATAAAAATACACATGT+AGG | + | chr4_4:26730632-26730651 | None:intergenic | 25.0% |
| !!! | ACATGTGTATTTTTATATCC+TGG | - | chr4_4:26730632-26730651 | Msa0676280:intron | 25.0% |
| !!! | TAATGACTTCACTTTTTGTC+AGG | - | chr4_4:26725264-26725283 | Msa0676280:three_prime_UTR | 30.0% |
| AGTGAATGAGGGTAATAAAA+TGG | + | chr4_4:26725314-26725333 | None:intergenic | 30.0% | |
| AGCTTAGACATCATAGTTTA+AGG | - | chr4_4:26725519-26725538 | Msa0676280:three_prime_UTR | 30.0% | |
| GTAAACTCTATGACTCTATT+TGG | + | chr4_4:26725616-26725635 | None:intergenic | 30.0% | |
| CACTTGCAAAAGTAAACTTT+AGG | - | chr4_4:26725723-26725742 | Msa0676280:CDS | 30.0% | |
| AGACTAATTCACACTACATA+CGG | - | chr4_4:26725787-26725806 | Msa0676280:intron | 30.0% | |
| TTATCTATGAAGCATGGATA+CGG | - | chr4_4:26725866-26725885 | Msa0676280:intron | 30.0% | |
| ATTTGAGGATTCTTCCTTTA+TGG | + | chr4_4:26726117-26726136 | None:intergenic | 30.0% | |
| AGCAGTAGTAACAACAATAA+TGG | - | chr4_4:26726140-26726159 | Msa0676280:intron | 30.0% | |
| AGTAGTAACAACAATAATGG+TGG | - | chr4_4:26726143-26726162 | Msa0676280:intron | 30.0% | |
| ACAATAATGGTGGTATCTTA+TGG | - | chr4_4:26726153-26726172 | Msa0676280:intron | 30.0% | |
| ! | TTCTTCAAACTCTAAAAAGG+AGG | - | chr4_4:26726196-26726215 | Msa0676280:intron | 30.0% |
| ! | TCTTCAAACTCTAAAAAGGA+GGG | - | chr4_4:26726197-26726216 | Msa0676280:intron | 30.0% |
| ! | TGACTATAACCCTTTTCAAA+AGG | + | chr4_4:26726356-26726375 | None:intergenic | 30.0% |
| TGAAAAGGGTTATAGTCAAA+TGG | - | chr4_4:26726358-26726377 | Msa0676280:intron | 30.0% | |
| !! | CTATCATAAGCATTGGAAAT+TGG | + | chr4_4:26726588-26726607 | None:intergenic | 30.0% |
| GGTCATATCAACTTTAGTAA+TGG | + | chr4_4:26726618-26726637 | None:intergenic | 30.0% | |
| ATAACACTTACTCTCAATCA+TGG | - | chr4_4:26726697-26726716 | Msa0676280:intron | 30.0% | |
| AACACTAATCGTAAAATCGT+AGG | + | chr4_4:26726753-26726772 | None:intergenic | 30.0% | |
| !! | TTTCACTGATTTAGGATTCT+GGG | + | chr4_4:26726798-26726817 | None:intergenic | 30.0% |
| !! | ATTTCACTGATTTAGGATTC+TGG | + | chr4_4:26726799-26726818 | None:intergenic | 30.0% |
| !! | GGATTTCATTTCACTGATTT+AGG | + | chr4_4:26726806-26726825 | None:intergenic | 30.0% |
| ATTAACGGAAGCGATTATAT+AGG | + | chr4_4:26726827-26726846 | None:intergenic | 30.0% | |
| ! | ATCGTGGATTTTACGATTAA+CGG | + | chr4_4:26726842-26726861 | None:intergenic | 30.0% |
| ! | TTTTACGTATAATCCGTAAG+GGG | + | chr4_4:26727145-26727164 | None:intergenic | 30.0% |
| ! | GATTTTACGTATAATCCGTA+AGG | + | chr4_4:26727147-26727166 | None:intergenic | 30.0% |
| AAATGAAAATCACACAGCAA+AGG | + | chr4_4:26727339-26727358 | None:intergenic | 30.0% | |
| CTAACATTTATAAGGAAGAG+TGG | + | chr4_4:26727506-26727525 | None:intergenic | 30.0% | |
| ATAAATGGTCTACAACTTTC+TGG | + | chr4_4:26727626-26727645 | None:intergenic | 30.0% | |
| ATGGTGATATATTGTAGACA+CGG | + | chr4_4:26727917-26727936 | None:intergenic | 30.0% | |
| TATATATGCATTTCCTGTTG+GGG | - | chr4_4:26728030-26728049 | Msa0676280:intron | 30.0% | |
| TACAGTACGGAATAACAAAA+AGG | + | chr4_4:26728120-26728139 | None:intergenic | 30.0% | |
| TGTTCATAGAGATTGACATA+TGG | + | chr4_4:26728232-26728251 | None:intergenic | 30.0% | |
| CATCCTAGAAAAAAATTCAG+TGG | - | chr4_4:26729096-26729115 | Msa0676280:intron | 30.0% | |
| ACAGATCTACAATCTTTACA+TGG | + | chr4_4:26729171-26729190 | None:intergenic | 30.0% | |
| ATAGTATGTTATAGCTTGAG+TGG | - | chr4_4:26729375-26729394 | Msa0676280:intron | 30.0% | |
| GCTAAAATCAATTGCAATGA+CGG | + | chr4_4:26729450-26729469 | None:intergenic | 30.0% | |
| !! | TTTTTAGGAATATGTCTCAC+CGG | + | chr4_4:26729557-26729576 | None:intergenic | 30.0% |
| TTCATATTCATAACCACCTT+CGG | - | chr4_4:26729587-26729606 | Msa0676280:intron | 30.0% | |
| ! | AATCTTACTAAGCTTTAGCT+TGG | - | chr4_4:26729731-26729750 | Msa0676280:CDS | 30.0% |
| ! | ATCTTACTAAGCTTTAGCTT+GGG | - | chr4_4:26729732-26729751 | Msa0676280:CDS | 30.0% |
| TATGTTGAACATCATATGTG+AGG | + | chr4_4:26730071-26730090 | None:intergenic | 30.0% | |
| TATCAGATAAATACCATGCT+TGG | - | chr4_4:26730278-26730297 | Msa0676280:intron | 30.0% | |
| ATCAGATAAATACCATGCTT+GGG | - | chr4_4:26730279-26730298 | Msa0676280:intron | 30.0% | |
| TCTGATTAAAGAATCCCTAT+TGG | - | chr4_4:26730487-26730506 | Msa0676280:intron | 30.0% | |
| ! | TAGAATGTTCATTTGGGTTA+TGG | - | chr4_4:26730713-26730732 | Msa0676280:intron | 30.0% |
| TCTCAAATTATTACCGGTGT+CGG | + | chr4_4:26725397-26725416 | None:intergenic | 35.0% | |
| AATCGCGGATATTTCCATAA+AGG | - | chr4_4:26726100-26726119 | Msa0676280:intron | 35.0% | |
| TAATGGTGGTATCTTATGGA+AGG | - | chr4_4:26726157-26726176 | Msa0676280:intron | 35.0% | |
| ! | TCTAAAAAGGAGGGTACAAT+TGG | - | chr4_4:26726206-26726225 | Msa0676280:intron | 35.0% |
| GAGTTCTGTTAAAAAGCCAA+CGG | - | chr4_4:26726316-26726335 | Msa0676280:intron | 35.0% | |
| !! | GCCAAAGTTCCTTTTGAAAA+GGG | - | chr4_4:26726344-26726363 | Msa0676280:intron | 35.0% |
| ! | ACCCTTTTCAAAAGGAACTT+TGG | + | chr4_4:26726348-26726367 | None:intergenic | 35.0% |
| AGGGTTATAGTCAAATGGAT+TGG | - | chr4_4:26726363-26726382 | Msa0676280:intron | 35.0% | |
| TTGAAAGAGTTAAGAGCTAC+TGG | - | chr4_4:26726497-26726516 | Msa0676280:intron | 35.0% | |
| ! | GATAGCTTTTGCCAACAATT+GGG | + | chr4_4:26726664-26726683 | None:intergenic | 35.0% |
| ! | AGATAGCTTTTGCCAACAAT+TGG | + | chr4_4:26726665-26726684 | None:intergenic | 35.0% |
| CAATCATGGTAGTCAAAATC+AGG | - | chr4_4:26726711-26726730 | Msa0676280:intron | 35.0% | |
| ! | ATGGAACGTTTTCAAATCGT+GGG | - | chr4_4:26726932-26726951 | Msa0676280:intron | 35.0% |
| AGAAACCCATTTCAGTAACT+CGG | - | chr4_4:26726959-26726978 | Msa0676280:intron | 35.0% | |
| TTAACCCGAGTTACTGAAAT+GGG | + | chr4_4:26726967-26726986 | None:intergenic | 35.0% | |
| AGTCTCACGAGTTACTAAAA+CGG | + | chr4_4:26726999-26727018 | None:intergenic | 35.0% | |
| CTAGTTTAAGTGCATCATGT+AGG | - | chr4_4:26727039-26727058 | Msa0676280:intron | 35.0% | |
| ATGTTGTTATGTTCCCCTTA+CGG | - | chr4_4:26727129-26727148 | Msa0676280:intron | 35.0% | |
| AGAGCAAGGTAGTAAAAATC+AGG | + | chr4_4:26727169-26727188 | None:intergenic | 35.0% | |
| AAAAGAATGGAATTAAGGGG+CGG | + | chr4_4:26727398-26727417 | None:intergenic | 35.0% | |
| AGAGCTTGAAACCAAAAGTA+GGG | + | chr4_4:26727452-26727471 | None:intergenic | 35.0% | |
| AACATCATGTATGTTGATCC+AGG | - | chr4_4:26727801-26727820 | Msa0676280:intron | 35.0% | |
| TATGTTGATCCAGGTCTAAA+AGG | - | chr4_4:26727810-26727829 | Msa0676280:intron | 35.0% | |
| GAACAGGAGACTAATTTCTA+TGG | - | chr4_4:26727839-26727858 | Msa0676280:intron | 35.0% | |
| ! | GTTAGAAAGCACAAAACAGA+AGG | - | chr4_4:26727867-26727886 | Msa0676280:intron | 35.0% |
| ACAAAACAGAAGGTGAAATG+TGG | - | chr4_4:26727877-26727896 | Msa0676280:intron | 35.0% | |
| ! | GAAATGTGGACTGTATTGAA+AGG | - | chr4_4:26727891-26727910 | Msa0676280:intron | 35.0% |
| !!! | AGTTGATAGTTTTACCTCCA+GGG | + | chr4_4:26727953-26727972 | None:intergenic | 35.0% |
| !! | AGGTGTTGATATGTTGATGA+AGG | - | chr4_4:26728060-26728079 | Msa0676280:intron | 35.0% |
| TGATTAGGATTAGAACTTGC+AGG | - | chr4_4:26728355-26728374 | Msa0676280:intron | 35.0% | |
| ATTCAACATGTTACCAGATC+AGG | - | chr4_4:26728466-26728485 | Msa0676280:intron | 35.0% | |
| !! | ATAGAAATGGATTGTACACC+AGG | - | chr4_4:26728546-26728565 | Msa0676280:intron | 35.0% |
| AGAAAAAATTAATTGGCGGC+TGG | + | chr4_4:26728608-26728627 | None:intergenic | 35.0% | |
| GATTGTAGATCTGTGTGAAT+GGG | - | chr4_4:26728644-26728663 | Msa0676280:intron | 35.0% | |
| !!! | CTGCCACTGAATTTTTTTCT+AGG | + | chr4_4:26729102-26729121 | None:intergenic | 35.0% |
| AGATTGTAGATCTGTGTGAA+TGG | - | chr4_4:26729176-26729195 | Msa0676280:intron | 35.0% | |
| !! | GCAAAGACAAAAGTGTTCAT+CGG | + | chr4_4:26729619-26729638 | None:intergenic | 35.0% |
| TAGAGAAAAGAGAAACAGCA+GGG | + | chr4_4:26729682-26729701 | None:intergenic | 35.0% | |
| TTTCTCTACATTCCATCAAC+CGG | - | chr4_4:26729694-26729713 | Msa0676280:CDS | 35.0% | |
| !! | AGATTTCAGCTTGTTACAAC+CGG | + | chr4_4:26729716-26729735 | None:intergenic | 35.0% |
| ATCACCTGATTTAGACAAAC+AGG | - | chr4_4:26729811-26729830 | Msa0676280:intron | 35.0% | |
| TGATCCTGTTTGTCTAAATC+AGG | + | chr4_4:26729818-26729837 | None:intergenic | 35.0% | |
| TCTTAGTTATGTTCCATGTG+AGG | - | chr4_4:26729870-26729889 | Msa0676280:CDS | 35.0% | |
| TTATGTTCCATGTGAGGAAT+TGG | - | chr4_4:26729876-26729895 | Msa0676280:CDS | 35.0% | |
| CATAATTCCAATTCCTCACA+TGG | + | chr4_4:26729886-26729905 | None:intergenic | 35.0% | |
| TCTTAGTTTCCCAAAATGCT+TGG | - | chr4_4:26730005-26730024 | Msa0676280:intron | 35.0% | |
| ! | TGTTTCAAAGTACTTGCAGT+TGG | - | chr4_4:26730106-26730125 | Msa0676280:intron | 35.0% |
| TCTAAGCAACAACTGAATCA+TGG | + | chr4_4:26730161-26730180 | None:intergenic | 35.0% | |
| ! | TGAAGTACTATGTGAAGTGT+GGG | + | chr4_4:26730208-26730227 | None:intergenic | 35.0% |
| ATTCTTACTGGAAAAATGCC+TGG | - | chr4_4:26730312-26730331 | Msa0676280:intron | 35.0% | |
| CCTTATTGAATAATGACTCC+TGG | + | chr4_4:26730429-26730448 | None:intergenic | 35.0% | |
| CCAGGAGTCATTATTCAATA+AGG | - | chr4_4:26730426-26730445 | Msa0676280:intron | 35.0% | |
| TTGTATGACGAACTCCAATA+GGG | + | chr4_4:26730504-26730523 | None:intergenic | 35.0% | |
| ATTGTATGACGAACTCCAAT+AGG | + | chr4_4:26730505-26730524 | None:intergenic | 35.0% | |
| AGTACAGTTGTTCTGTAATC+TGG | - | chr4_4:26730530-26730549 | Msa0676280:intron | 35.0% | |
| TTACCCTCATTCACTTGTTC+AGG | - | chr4_4:26725319-26725338 | Msa0676280:three_prime_UTR | 40.0% | |
| CTTCCTGAACAAGTGAATGA+GGG | + | chr4_4:26725325-26725344 | None:intergenic | 40.0% | |
| ACTTCCTGAACAAGTGAATG+AGG | + | chr4_4:26725326-26725345 | None:intergenic | 40.0% | |
| ! | CAAGCTTGTTTCAGAAATCG+CGG | - | chr4_4:26726085-26726104 | Msa0676280:intron | 40.0% |
| GTTACTACTGCTTGCATTTG+AGG | + | chr4_4:26726132-26726151 | None:intergenic | 40.0% | |
| ATCAACCAAGAGTGATGCTA+AGG | - | chr4_4:26726265-26726284 | Msa0676280:intron | 40.0% | |
| TTCTGTTCTGACAACTTCTG+AGG | + | chr4_4:26726296-26726315 | None:intergenic | 40.0% | |
| CTGTTAAAAAGCCAACGGTT+CGG | - | chr4_4:26726321-26726340 | Msa0676280:intron | 40.0% | |
| TGTTAAAAAGCCAACGGTTC+GGG | - | chr4_4:26726322-26726341 | Msa0676280:intron | 40.0% | |
| !! | GGCCAAAGTTCCTTTTGAAA+AGG | - | chr4_4:26726343-26726362 | Msa0676280:intron | 40.0% |
| ! | GTGTGGCATGTATCAGTTTT+TGG | - | chr4_4:26726548-26726567 | Msa0676280:intron | 40.0% |
| TACGATTAGTGTTGCCTTGA+AGG | - | chr4_4:26726760-26726779 | Msa0676280:intron | 40.0% | |
| TAAAATCCACGATCTTCGAG+TGG | - | chr4_4:26726849-26726868 | Msa0676280:intron | 40.0% | |
| ! | GATGGAACGTTTTCAAATCG+TGG | - | chr4_4:26726931-26726950 | Msa0676280:intron | 40.0% |
| GAAACCCATTTCAGTAACTC+GGG | - | chr4_4:26726960-26726979 | Msa0676280:intron | 40.0% | |
| GTTAACCCGAGTTACTGAAA+TGG | + | chr4_4:26726968-26726987 | None:intergenic | 40.0% | |
| GTCTCACGAGTTACTAAAAC+GGG | + | chr4_4:26726998-26727017 | None:intergenic | 40.0% | |
| TCAATTCCAGAGGCCAAATT+TGG | + | chr4_4:26727197-26727216 | None:intergenic | 40.0% | |
| !! | ATTTGGCCTCTGGAATTGAA+TGG | - | chr4_4:26727198-26727217 | Msa0676280:intron | 40.0% |
| GATCAACCATTCAATTCCAG+AGG | + | chr4_4:26727207-26727226 | None:intergenic | 40.0% | |
| !! | AGTTTTAACGTAGCAGAGCT+CGG | - | chr4_4:26727235-26727254 | Msa0676280:intron | 40.0% |
| AAAGAATGGAATTAAGGGGC+GGG | + | chr4_4:26727397-26727416 | None:intergenic | 40.0% | |
| CAGAGCTTGAAACCAAAAGT+AGG | + | chr4_4:26727453-26727472 | None:intergenic | 40.0% | |
| ! | ACAACTTTCTGGTCAGACAA+AGG | + | chr4_4:26727615-26727634 | None:intergenic | 40.0% |
| !!! | GAGTTGATAGTTTTACCTCC+AGG | + | chr4_4:26727954-26727973 | None:intergenic | 40.0% |
| TTTCCTGTTGGGGAAAAATC+AGG | - | chr4_4:26728040-26728059 | Msa0676280:intron | 40.0% | |
| ! | TGATATGTTGATGAAGGCAG+TGG | - | chr4_4:26728066-26728085 | Msa0676280:intron | 40.0% |
| ! | GATATGTTGATGAAGGCAGT+GGG | - | chr4_4:26728067-26728086 | Msa0676280:intron | 40.0% |
| TCTCTGTGCATAGATTGCAT+TGG | - | chr4_4:26728254-26728273 | Msa0676280:intron | 40.0% | |
| CACATGATCAATACCTGATC+TGG | + | chr4_4:26728482-26728501 | None:intergenic | 40.0% | |
| !! | GGTATTGATCATGTGACTAG+TGG | - | chr4_4:26728487-26728506 | Msa0676280:intron | 40.0% |
| TTGTACACCAGGAAGTTTCT+AGG | - | chr4_4:26728557-26728576 | Msa0676280:intron | 40.0% | |
| GGATTGTAGATCTGTGTGAA+TGG | - | chr4_4:26728643-26728662 | Msa0676280:intron | 40.0% | |
| CTTTACATGGTATCAGAGCA+TGG | + | chr4_4:26729158-26729177 | None:intergenic | 40.0% | |
| !! | AAGACAAAAGTGTTCATCGG+AGG | + | chr4_4:26729616-26729635 | None:intergenic | 40.0% |
| GTAGAGAAAAGAGAAACAGC+AGG | + | chr4_4:26729683-26729702 | None:intergenic | 40.0% | |
| !! | TTACTAAGCTTTAGCTTGGG+AGG | - | chr4_4:26729735-26729754 | Msa0676280:CDS | 40.0% |
| TAAGTAGGCACATTGATCTC+TGG | + | chr4_4:26729957-26729976 | None:intergenic | 40.0% | |
| TTCCCAAAATGCTTGGAAGT+TGG | - | chr4_4:26730012-26730031 | Msa0676280:intron | 40.0% | |
| TCCCAAAATGCTTGGAAGTT+GGG | - | chr4_4:26730013-26730032 | Msa0676280:intron | 40.0% | |
| ! | TCCCAACTTCCAAGCATTTT+GGG | + | chr4_4:26730017-26730036 | None:intergenic | 40.0% |
| ! | ATCCCAACTTCCAAGCATTT+TGG | + | chr4_4:26730018-26730037 | None:intergenic | 40.0% |
| ! | TTCAAAGTACTTGCAGTTGG+TGG | - | chr4_4:26730109-26730128 | Msa0676280:intron | 40.0% |
| ! | AGTTGTTGCTTAGATTCCCT+GGG | - | chr4_4:26730167-26730186 | Msa0676280:intron | 40.0% |
| ! | GAAGTACTATGTGAAGTGTG+GGG | + | chr4_4:26730207-26730226 | None:intergenic | 40.0% |
| ! | GTGAAGTACTATGTGAAGTG+TGG | + | chr4_4:26730209-26730228 | None:intergenic | 40.0% |
| TTACTGGAAAAATGCCTGGT+GGG | - | chr4_4:26730316-26730335 | Msa0676280:intron | 40.0% | |
| !! | TCTTCACTGACTTTCATCCA+AGG | + | chr4_4:26730344-26730363 | None:intergenic | 40.0% |
| ! | TGAAGAAATGAAGCTAGCCT+TGG | - | chr4_4:26730358-26730377 | Msa0676280:intron | 40.0% |
| CCTGGCAAGTAAATAGAAGA+GGG | + | chr4_4:26730411-26730430 | None:intergenic | 40.0% | |
| TCCTGGCAAGTAAATAGAAG+AGG | + | chr4_4:26730412-26730431 | None:intergenic | 40.0% | |
| TCCTTGTAGAGTGTAAGCAA+TGG | - | chr4_4:26730669-26730688 | Msa0676280:intron | 40.0% | |
| ATGGCAAAAATGAAGAGCTC+AGG | - | chr4_4:26730732-26730751 | Msa0676280:intron | 40.0% | |
| ATACGGACACTAGACACAGA+CGG | - | chr4_4:26725883-26725902 | Msa0676280:intron | 45.0% | |
| TATGAAGCACGAACACTCCT+CGG | + | chr4_4:26725988-26726007 | None:intergenic | 45.0% | |
| TTTGTAGGTGAGTACACCTG+CGG | - | chr4_4:26726052-26726071 | Msa0676280:intron | 45.0% | |
| GGTGGTATCTTATGGAAGGA+TGG | - | chr4_4:26726161-26726180 | Msa0676280:intron | 45.0% | |
| CGAATCCTTAGCATCACTCT+TGG | + | chr4_4:26726273-26726292 | None:intergenic | 45.0% | |
| ACAGAATAACAGCACCTGCA+AGG | + | chr4_4:26726415-26726434 | None:intergenic | 45.0% | |
| ! | CTGATTTAGGATTCTGGGTG+TGG | + | chr4_4:26726793-26726812 | None:intergenic | 45.0% |
| TTCTACCACTGCAACCAGAA+TGG | + | chr4_4:26726881-26726900 | None:intergenic | 45.0% | |
| !! | CACTCTAGGGTTAGGAAAGA+TGG | - | chr4_4:26726913-26726932 | Msa0676280:intron | 45.0% |
| TAGTAACTCGTGAGACTTCC+TGG | - | chr4_4:26727002-26727021 | Msa0676280:intron | 45.0% | |
| CTAGTCTCGAACAACTAACC+AGG | + | chr4_4:26727023-26727042 | None:intergenic | 45.0% | |
| ! | CAAATTTGGAGCAGAGAGCA+AGG | + | chr4_4:26727183-26727202 | None:intergenic | 45.0% |
| CTTGCTCTCTGCTCCAAATT+TGG | - | chr4_4:26727181-26727200 | Msa0676280:intron | 45.0% | |
| !! | GTTTTAACGTAGCAGAGCTC+GGG | - | chr4_4:26727236-26727255 | Msa0676280:intron | 45.0% |
| CACTAGGGTGAAATCAACCT+TGG | + | chr4_4:26727301-26727320 | None:intergenic | 45.0% | |
| ! | ACATCGCATTCAAGGCACTA+GGG | + | chr4_4:26727316-26727335 | None:intergenic | 45.0% |
| AGCAAAGGACATCGCATTCA+AGG | + | chr4_4:26727324-26727343 | None:intergenic | 45.0% | |
| AGCTCTGCTAGTCACTCAAT+TGG | - | chr4_4:26727466-26727485 | Msa0676280:intron | 45.0% | |
| ! | TTCGACTGTCCTTTTAGACC+TGG | + | chr4_4:26727822-26727841 | None:intergenic | 45.0% |
| GTCTAAAAGGACAGTCGAAC+AGG | - | chr4_4:26727823-26727842 | Msa0676280:intron | 45.0% | |
| CCAGGGTGAAACGTCATATA+TGG | + | chr4_4:26727936-26727955 | None:intergenic | 45.0% | |
| CCATATATGACGTTTCACCC+TGG | - | chr4_4:26727933-26727952 | Msa0676280:intron | 45.0% | |
| TATATGACGTTTCACCCTGG+AGG | - | chr4_4:26727936-26727955 | Msa0676280:intron | 45.0% | |
| ! | ACACCTGATTTTTCCCCAAC+AGG | + | chr4_4:26728046-26728065 | None:intergenic | 45.0% |
| GTCTTTGCTACAATCACCTC+CGG | - | chr4_4:26729631-26729650 | Msa0676280:CDS | 45.0% | |
| !! | AGCTTGTTACAACCGGTTGA+TGG | + | chr4_4:26729709-26729728 | None:intergenic | 45.0% |
| ! | CAGTTGTTGCTTAGATTCCC+TGG | - | chr4_4:26730166-26730185 | Msa0676280:intron | 45.0% |
| GGAATGGATGACAAAACCCA+GGG | + | chr4_4:26730186-26730205 | None:intergenic | 45.0% | |
| ACTATGTGAAGTGTGGGGAA+TGG | + | chr4_4:26730202-26730221 | None:intergenic | 45.0% | |
| ATACCATGCTTGGGTTAACG+CGG | - | chr4_4:26730288-26730307 | Msa0676280:intron | 45.0% | |
| GGTTAACGCGGAATTCTTAC+TGG | - | chr4_4:26730300-26730319 | Msa0676280:intron | 45.0% | |
| CTTACTGGAAAAATGCCTGG+TGG | - | chr4_4:26730315-26730334 | Msa0676280:intron | 45.0% | |
| !! | AATGAAGCTAGCCTTGGTTC+AGG | - | chr4_4:26730364-26730383 | Msa0676280:intron | 45.0% |
| GGTATAAAGGACCTGAACCA+AGG | + | chr4_4:26730378-26730397 | None:intergenic | 45.0% | |
| GGTCCTTTATACCTCTTCAC+AGG | - | chr4_4:26730385-26730404 | Msa0676280:intron | 45.0% | |
| CCCTCTTCTATTTACTTGCC+AGG | - | chr4_4:26730408-26730427 | Msa0676280:intron | 45.0% | |
| AGGATAGCTTACACTCTACC+AGG | + | chr4_4:26730653-26730672 | None:intergenic | 45.0% | |
| GCCATTGCTTACACTCTACA+AGG | + | chr4_4:26730673-26730692 | None:intergenic | 45.0% | |
| TGTAGAGTGTAAGCAATGGC+TGG | - | chr4_4:26730673-26730692 | Msa0676280:intron | 45.0% | |
| ACATGCACCCTACTTGGAAA+AGG | + | chr4_4:26730758-26730777 | None:intergenic | 45.0% | |
| !! | TGCATGTCATGCGTTGATTC+AGG | - | chr4_4:26730771-26730790 | Msa0676280:intron | 45.0% |
| !!! | TTTTTTTTAATAAAACAATA+TGG | + | chr4_4:26726441-26726460 | None:intergenic | 5.0% |
| GATGTCTAAGCTACGATGCC+CGG | + | chr4_4:26725511-26725530 | None:intergenic | 50.0% | |
| !! | GAGGAGTGTTCGTGCTTCAT+AGG | - | chr4_4:26725987-26726006 | Msa0676280:intron | 50.0% |
| ! | AGCTTGTTTGTTTCCACCGC+AGG | + | chr4_4:26726071-26726090 | None:intergenic | 50.0% |
| ATAACAGCACCTGCAAGGTC+AGG | + | chr4_4:26726410-26726429 | None:intergenic | 50.0% | |
| GGTGTGGTCATGATCCTTCA+AGG | + | chr4_4:26726777-26726796 | None:intergenic | 50.0% | |
| CAGAATCCACTCGAAGATCG+TGG | + | chr4_4:26726858-26726877 | None:intergenic | 50.0% | |
| ! | TCGAGTGGATTCTGCCATTC+TGG | - | chr4_4:26726864-26726883 | Msa0676280:intron | 50.0% |
| ! | TTCTGCCATTCTGGTTGCAG+TGG | - | chr4_4:26726873-26726892 | Msa0676280:intron | 50.0% |
| TCTGCTCCAAATTTGGCCTC+TGG | - | chr4_4:26727188-26727207 | Msa0676280:intron | 50.0% | |
| ! | GACATCGCATTCAAGGCACT+AGG | + | chr4_4:26727317-26727336 | None:intergenic | 50.0% |
| ! | GGATGTGCTCTCCCTACTTT+TGG | - | chr4_4:26727438-26727457 | Msa0676280:intron | 50.0% |
| GCAGCTTCCTAGAAACTTCC+TGG | + | chr4_4:26728567-26728586 | None:intergenic | 50.0% | |
| ! | AGTTTCTAGGAAGCTGCTCG+TGG | - | chr4_4:26728570-26728589 | Msa0676280:intron | 50.0% |
| ! | GTATGAACAGAGGGTGTGCT+TGG | + | chr4_4:26729215-26729234 | None:intergenic | 50.0% |
| GGAATATGTCTCACCGGAGA+AGG | + | chr4_4:26729551-26729570 | None:intergenic | 50.0% | |
| TGTTCATCGGAGGATTCCGA+AGG | + | chr4_4:26729606-26729625 | None:intergenic | 50.0% | |
| CTGGAAAGTTGTGGTGCAAC+CGG | + | chr4_4:26729653-26729672 | None:intergenic | 50.0% | |
| GGGCTGTATCTGGAAAGTTG+TGG | + | chr4_4:26729662-26729681 | None:intergenic | 50.0% | |
| AGAAACAGCAGGGCTGTATC+TGG | + | chr4_4:26729672-26729691 | None:intergenic | 50.0% | |
| GGGAATGGATGACAAAACCC+AGG | + | chr4_4:26730187-26730206 | None:intergenic | 50.0% | |
| ATTCCGCGTTAACCCAAGCA+TGG | + | chr4_4:26730294-26730313 | None:intergenic | 50.0% | |
| ! | AAAATGCCTGGTGGGTACCT+TGG | - | chr4_4:26730324-26730343 | Msa0676280:intron | 50.0% |
| ! | TTTCATCCAAGGTACCCACC+AGG | + | chr4_4:26730333-26730352 | None:intergenic | 50.0% |
| ! | GGGCCTGTGAAGAGGTATAA+AGG | + | chr4_4:26730391-26730410 | None:intergenic | 50.0% |
| ATAGAAGAGGGCCTGTGAAG+AGG | + | chr4_4:26730399-26730418 | None:intergenic | 50.0% | |
| ! | AGCTCAGGCCTTTTCCAAGT+AGG | - | chr4_4:26730747-26730766 | Msa0676280:intron | 50.0% |
| ! | GCTCAGGCCTTTTCCAAGTA+GGG | - | chr4_4:26730748-26730767 | Msa0676280:intron | 50.0% |
| CTTAGACACGGACACCGACA+CGG | - | chr4_4:26725366-26725385 | Msa0676280:intron | 55.0% | |
| TCCTGATGTCGGACAGGTGT+CGG | + | chr4_4:26725474-26725493 | None:intergenic | 55.0% | |
| GCACGAACACTCCTCGGATT+AGG | + | chr4_4:26725982-26726001 | None:intergenic | 55.0% | |
| CGAACTCATCCTGACCTTGC+AGG | - | chr4_4:26726398-26726417 | Msa0676280:intron | 55.0% | |
| TGCAGTGGTAGAAGTCGCGA+CGG | - | chr4_4:26726888-26726907 | Msa0676280:intron | 55.0% | |
| AAGGGGCGGGAGAAGAAACA+GGG | + | chr4_4:26727384-26727403 | None:intergenic | 55.0% | |
| TAAGGGGCGGGAGAAGAAAC+AGG | + | chr4_4:26727385-26727404 | None:intergenic | 55.0% | |
| AATTCAGTGGCAGCCGACAG+TGG | - | chr4_4:26729109-26729128 | Msa0676280:intron | 55.0% | |
| GCGAGCTTTCGTACCACTGT+CGG | + | chr4_4:26729125-26729144 | None:intergenic | 55.0% | |
| ACAACCAGTTGCGCCTTCTC+CGG | - | chr4_4:26729535-26729554 | Msa0676280:intron | 55.0% | |
| TCATCGGAGGATTCCGAAGG+TGG | + | chr4_4:26729603-26729622 | None:intergenic | 55.0% | |
| GAAAGTTGTGGTGCAACCGG+AGG | + | chr4_4:26729650-26729669 | None:intergenic | 55.0% | |
| CGCATGACATGCACCCTACT+TGG | + | chr4_4:26730764-26730783 | None:intergenic | 55.0% | |
| !! | TGTCGGACAGGTGTCGGTGT+CGG | + | chr4_4:26725468-26725487 | None:intergenic | 60.0% |
| ACCGACACCTGTCCGACATC+AGG | - | chr4_4:26725470-26725489 | Msa0676280:three_prime_UTR | 60.0% | |
| CTCCTCGGGTGTCCTGATGT+CGG | + | chr4_4:26725485-26725504 | None:intergenic | 60.0% | |
| TACGATGCCCGGACACTCCT+CGG | + | chr4_4:26725500-26725519 | None:intergenic | 60.0% | |
| GACACGACACGCCTAATCCG+AGG | - | chr4_4:26725968-26725987 | Msa0676280:intron | 60.0% | |
| GTAGGTGAGTACACCTGCGG+TGG | - | chr4_4:26726055-26726074 | Msa0676280:intron | 60.0% | |
| GGAACTTTGGCCCGAACCGT+TGG | + | chr4_4:26726335-26726354 | None:intergenic | 60.0% | |
| !! | CGGTGTCGGTGTGTCCGTGT+CGG | + | chr4_4:26725383-26725402 | None:intergenic | 65.0% |
| CGACACGGACACACCGACAC+CGG | - | chr4_4:26725381-26725400 | Msa0676280:intron | 65.0% | |
| CGGGTGTCCTGATGTCGGAC+AGG | + | chr4_4:26725480-26725499 | None:intergenic | 65.0% | |
| GTCCGACATCAGGACACCCG+AGG | - | chr4_4:26725480-26725499 | Msa0676280:three_prime_UTR | 65.0% | |
| !! | CAGGACACCCGAGGAGTGTC+CGG | - | chr4_4:26725489-26725508 | Msa0676280:three_prime_UTR | 65.0% |
| !! | AGGACACCCGAGGAGTGTCC+GGG | - | chr4_4:26725490-26725509 | Msa0676280:three_prime_UTR | 65.0% |
| ACGATGCCCGGACACTCCTC+GGG | + | chr4_4:26725499-26725518 | None:intergenic | 65.0% | |
| AAGTCGCGACGGCGCACTCT+AGG | - | chr4_4:26726899-26726918 | Msa0676280:intron | 65.0% | |
| AGTCGCGACGGCGCACTCTA+GGG | - | chr4_4:26726900-26726919 | Msa0676280:intron | 65.0% | |
| !! | CGACGGCGCACTCTAGGGTT+AGG | - | chr4_4:26726905-26726924 | Msa0676280:intron | 65.0% |
| ! | CTCACCGGAGAAGGCGCAAC+TGG | + | chr4_4:26729542-26729561 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 26725253 | 26730796 | 26725253 | ID=Msa0676280;Name=Msa0676280 |
| chr4_4 | mRNA | 26725253 | 26730796 | 26725253 | ID=Msa0676280-mRNA-1;Parent=Msa0676280;Name=Msa0676280-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.4|0.5|1|0.2|0.16|6|416|176 |
| chr4_4 | exon | 26725253 | 26725375 | 26725253 | ID=Msa0676280-mRNA-1:exon:7110;Parent=Msa0676280-mRNA-1 |
| chr4_4 | exon | 26725396 | 26725765 | 26725396 | ID=Msa0676280-mRNA-1:exon:7109;Parent=Msa0676280-mRNA-1 |
| chr4_4 | exon | 26728092 | 26728226 | 26728092 | ID=Msa0676280-mRNA-1:exon:7108;Parent=Msa0676280-mRNA-1 |
| chr4_4 | exon | 26729630 | 26729805 | 26729630 | ID=Msa0676280-mRNA-1:exon:7107;Parent=Msa0676280-mRNA-1 |
| chr4_4 | exon | 26729815 | 26729950 | 26729815 | ID=Msa0676280-mRNA-1:exon:7106;Parent=Msa0676280-mRNA-1 |
| chr4_4 | exon | 26730790 | 26730796 | 26730790 | ID=Msa0676280-mRNA-1:exon:7105;Parent=Msa0676280-mRNA-1 |
| chr4_4 | CDS | 26730790 | 26730796 | 26730790 | ID=Msa0676280-mRNA-1:cds;Parent=Msa0676280-mRNA-1 |
| chr4_4 | CDS | 26729815 | 26729950 | 26729815 | ID=Msa0676280-mRNA-1:cds;Parent=Msa0676280-mRNA-1 |
| chr4_4 | CDS | 26729630 | 26729805 | 26729630 | ID=Msa0676280-mRNA-1:cds;Parent=Msa0676280-mRNA-1 |
| chr4_4 | CDS | 26728092 | 26728226 | 26728092 | ID=Msa0676280-mRNA-1:cds;Parent=Msa0676280-mRNA-1 |
| chr4_4 | CDS | 26725689 | 26725765 | 26725689 | ID=Msa0676280-mRNA-1:cds;Parent=Msa0676280-mRNA-1 |
| chr4_4 | three_prime_UTR | 26725396 | 26725688 | 26725396 | ID=Msa0676280-mRNA-1:three_prime_utr;Parent=Msa0676280-mRNA-1 |
| chr4_4 | three_prime_UTR | 26725253 | 26725375 | 26725253 | ID=Msa0676280-mRNA-1:three_prime_utr;Parent=Msa0676280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
