Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0672110 | XP_013455085.1 | 99.548 | 221 | 1 | 0 | 1 | 221 | 1 | 221 | 1.84e-164 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0672110 | sp|O22152|YAB1_ARATH | 70.283 | 212 | 53 | 6 | 19 | 221 | 19 | 229 | 4.38e-96 | 282 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0672110 | A0A072UJ49 | 99.548 | 221 | 1 | 0 | 1 | 221 | 1 | 221 | 8.78e-165 | 462 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0672110 | TF | C2C2-YABBY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa0672110 | 0.800703 | 1.272821e-48 | -8.615850e-47 |
| Msa0004360 | Msa0672110 | 0.810505 | 1.115014e-50 | -8.615850e-47 |
| Msa0005050 | Msa0672110 | 0.864333 | 1.311013e-64 | -8.615850e-47 |
| Msa0030310 | Msa0672110 | 0.814713 | 1.339132e-51 | -8.615850e-47 |
| Msa0036430 | Msa0672110 | 0.811087 | 8.342174e-51 | -8.615850e-47 |
| Msa0053110 | Msa0672110 | 0.857157 | 1.975483e-62 | -8.615850e-47 |
| Msa0072810 | Msa0672110 | 0.813400 | 2.609491e-51 | -8.615850e-47 |
| Msa0077410 | Msa0672110 | 0.810039 | 1.405171e-50 | -8.615850e-47 |
| Msa0084500 | Msa0672110 | 0.800578 | 1.349869e-48 | -8.615850e-47 |
| Msa0098440 | Msa0672110 | 0.840646 | 7.669477e-58 | -8.615850e-47 |
| Msa0103000 | Msa0672110 | 0.801419 | 9.086236e-49 | -8.615850e-47 |
| Msa0633750 | Msa0672110 | 0.893796 | 4.499303e-75 | -8.615850e-47 |
| Msa0641620 | Msa0672110 | 0.826516 | 2.599766e-54 | -8.615850e-47 |
| Msa0654540 | Msa0672110 | 0.820163 | 7.929290e-53 | -8.615850e-47 |
| Msa0672110 | Msa0678890 | 0.822898 | 1.851406e-53 | -8.615850e-47 |
| Msa0672110 | Msa0680150 | 0.850056 | 2.173580e-60 | -8.615850e-47 |
| Msa0672110 | Msa0688500 | 0.800052 | 1.726713e-48 | -8.615850e-47 |
| Msa0672110 | Msa0722940 | 0.805206 | 1.493193e-49 | -8.615850e-47 |
| Msa0672110 | Msa0723150 | 0.809791 | 1.588796e-50 | -8.615850e-47 |
| Msa0672110 | Msa0747780 | 0.861771 | 8.119424e-64 | -8.615850e-47 |
| Msa0672110 | Msa0776220 | 0.809121 | 2.213160e-50 | -8.615850e-47 |
| Msa0672110 | Msa0843290 | 0.814215 | 1.725974e-51 | -8.615850e-47 |
| Msa0672110 | Msa0872310 | 0.840695 | 7.446312e-58 | -8.615850e-47 |
| Msa0672110 | Msa0873190 | 0.806117 | 9.610138e-50 | -8.615850e-47 |
| Msa0672110 | Msa0885060 | 0.809401 | 1.927072e-50 | -8.615850e-47 |
| Msa0672110 | Msa0905550 | 0.846589 | 1.975797e-59 | -8.615850e-47 |
| Msa0672110 | Msa0906370 | 0.802716 | 4.916841e-49 | -8.615850e-47 |
| Msa0672110 | Msa0925160 | 0.801512 | 8.696674e-49 | -8.615850e-47 |
| Msa0672110 | Msa0930330 | 0.805491 | 1.301158e-49 | -8.615850e-47 |
| Msa0672110 | Msa0931480 | 0.807043 | 6.127473e-50 | -8.615850e-47 |
| Msa0672110 | Msa0937550 | 0.864421 | 1.231335e-64 | -8.615850e-47 |
| Msa0672110 | Msa0974750 | 0.826099 | 3.267248e-54 | -8.615850e-47 |
| Msa0672110 | Msa1004500 | 0.808577 | 2.893241e-50 | -8.615850e-47 |
| Msa0672110 | Msa1004520 | 0.800808 | 1.211105e-48 | -8.615850e-47 |
| Msa0672110 | Msa1007350 | 0.801108 | 1.051871e-48 | -8.615850e-47 |
| Msa0672110 | Msa1014270 | 0.827409 | 1.589374e-54 | -8.615850e-47 |
| Msa0672110 | Msa1018790 | 0.814378 | 1.588342e-51 | -8.615850e-47 |
| Msa0672110 | Msa1022650 | 0.840096 | 1.068339e-57 | -8.615850e-47 |
| Msa0672110 | Msa1027790 | 0.813566 | 2.399207e-51 | -8.615850e-47 |
| Msa0672110 | Msa1041530 | 0.847661 | 1.004043e-59 | -8.615850e-47 |
| Msa0672110 | Msa1045880 | 0.810161 | 1.322981e-50 | -8.615850e-47 |
| Msa0672110 | Msa1045970 | 0.810639 | 1.042951e-50 | -8.615850e-47 |
| Msa0672110 | Msa1046870 | 0.811412 | 7.093433e-51 | -8.615850e-47 |
| Msa0672110 | Msa1055260 | 0.803332 | 3.667224e-49 | -8.615850e-47 |
| Msa0672110 | Msa1061500 | 0.812880 | 3.392799e-51 | -8.615850e-47 |
| Msa0672110 | Msa1081570 | 0.837786 | 4.231604e-57 | -8.615850e-47 |
| Msa0672110 | Msa1106810 | 0.818399 | 2.000303e-52 | -8.615850e-47 |
| Msa0672110 | Msa1112610 | 0.811759 | 5.963150e-51 | -8.615850e-47 |
| Msa0672110 | Msa1127140 | 0.848479 | 5.972928e-60 | -8.615850e-47 |
| Msa0672110 | Msa1134400 | 0.814084 | 1.844695e-51 | -8.615850e-47 |
| Msa0672110 | Msa1136230 | 0.807535 | 4.819546e-50 | -8.615850e-47 |
| Msa0672110 | Msa1150970 | 0.801105 | 1.053293e-48 | -8.615850e-47 |
| Msa0672110 | Msa1166400 | 0.836220 | 1.063201e-56 | -8.615850e-47 |
| Msa0672110 | Msa1197110 | 0.815666 | 8.226771e-52 | -8.615850e-47 |
| Msa0672110 | Msa1200920 | 0.801064 | 1.074082e-48 | -8.615850e-47 |
| Msa0672110 | Msa1211090 | 0.802828 | 4.660790e-49 | -8.615850e-47 |
| Msa0672110 | Msa1229700 | 0.821331 | 4.273172e-53 | -8.615850e-47 |
| Msa0672110 | Msa1249870 | 0.813154 | 2.954617e-51 | -8.615850e-47 |
| Msa0672110 | Msa1251290 | 0.804060 | 2.589326e-49 | -8.615850e-47 |
| Msa0672110 | Msa1272330 | 0.860423 | 2.086980e-63 | -8.615850e-47 |
| Msa0672110 | Msa1310290 | 0.816326 | 5.858215e-52 | -8.615850e-47 |
| Msa0672110 | Msa1355400 | 0.811491 | 6.819036e-51 | -8.615850e-47 |
| Msa0672110 | Msa1365020 | 0.813028 | 3.148581e-51 | -8.615850e-47 |
| Msa0672110 | Msa1367410 | 0.801564 | 8.485581e-49 | -8.615850e-47 |
| Msa0672110 | Msa1374440 | 0.812484 | 4.141684e-51 | -8.615850e-47 |
| Msa0672110 | Msa1375940 | 0.806066 | 9.850839e-50 | -8.615850e-47 |
| Msa0672110 | Msa1379990 | 0.800502 | 1.398729e-48 | -8.615850e-47 |
| Msa0672110 | Msa1391590 | 0.814765 | 1.304107e-51 | -8.615850e-47 |
| Msa0672110 | Msa1420060 | 0.842749 | 2.138567e-58 | -8.615850e-47 |
| Msa0672110 | Msa1421550 | 0.803167 | 3.966347e-49 | -8.615850e-47 |
| Msa0672110 | Msa1422270 | 0.802610 | 5.169432e-49 | -8.615850e-47 |
| Msa0672110 | Msa1439670 | 0.801261 | 9.787562e-49 | -8.615850e-47 |
| Msa0125280 | Msa0672110 | 0.824716 | 6.942112e-54 | -8.615850e-47 |
| Msa0134040 | Msa0672110 | 0.810118 | 1.351320e-50 | -8.615850e-47 |
| Msa0135980 | Msa0672110 | 0.816345 | 5.802108e-52 | -8.615850e-47 |
| Msa0139900 | Msa0672110 | 0.808786 | 2.609483e-50 | -8.615850e-47 |
| Msa0147560 | Msa0672110 | 0.806517 | 7.916575e-50 | -8.615850e-47 |
| Msa0169570 | Msa0672110 | 0.810869 | 9.299412e-51 | -8.615850e-47 |
| Msa0219190 | Msa0672110 | 0.813806 | 2.124611e-51 | -8.615850e-47 |
| Msa0370600 | Msa0672110 | 0.808365 | 3.209747e-50 | -8.615850e-47 |
| Msa0408640 | Msa0672110 | 0.819377 | 1.199378e-52 | -8.615850e-47 |
| Msa0418200 | Msa0672110 | 0.813226 | 2.849024e-51 | -8.615850e-47 |
| Msa0436500 | Msa0672110 | 0.835781 | 1.373748e-56 | -8.615850e-47 |
| Msa0464540 | Msa0672110 | 0.837158 | 6.128900e-57 | -8.615850e-47 |
| Msa0246690 | Msa0672110 | 0.819208 | 1.310230e-52 | -8.615850e-47 |
| Msa0257310 | Msa0672110 | 0.808940 | 2.419361e-50 | -8.615850e-47 |
| Msa0361260 | Msa0672110 | 0.823305 | 1.487569e-53 | -8.615850e-47 |
| Msa0484690 | Msa0672110 | 0.810321 | 1.221369e-50 | -8.615850e-47 |
| Msa0508400 | Msa0672110 | 0.808863 | 2.513033e-50 | -8.615850e-47 |
| Msa0532840 | Msa0672110 | 0.804836 | 1.784523e-49 | -8.615850e-47 |
| Msa0533010 | Msa0672110 | 0.801357 | 9.355210e-49 | -8.615850e-47 |
| Msa0537270 | Msa0672110 | 0.856965 | 2.252126e-62 | -8.615850e-47 |
| Msa0538220 | Msa0672110 | 0.806695 | 7.259509e-50 | -8.615850e-47 |
| Msa0538570 | Msa0672110 | 0.809260 | 2.065653e-50 | -8.615850e-47 |
| Msa0543850 | Msa0672110 | 0.814899 | 1.217983e-51 | -8.615850e-47 |
| Msa0593710 | Msa0672110 | 0.874140 | 8.523198e-68 | -8.615850e-47 |
| Msa0594390 | Msa0672110 | 0.816189 | 6.286879e-52 | -8.615850e-47 |
| Msa0601110 | Msa0672110 | 0.824721 | 6.921703e-54 | -8.615850e-47 |
| Msa0601120 | Msa0672110 | 0.819585 | 1.075208e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0672110 | MtrunA17_Chr4g0011841 | 99.548 | 221 | 1 | 0 | 1 | 221 | 1 | 221 | 1.69e-168 | 462 |
| Msa0672110 | MtrunA17_Chr4g0056521 | 71.292 | 209 | 52 | 6 | 18 | 221 | 13 | 218 | 1.85e-93 | 272 |
| Msa0672110 | MtrunA17_Chr4g0063931 | 53.368 | 193 | 64 | 4 | 20 | 206 | 11 | 183 | 2.98e-60 | 187 |
| Msa0672110 | MtrunA17_Chr2g0322221 | 52.041 | 196 | 83 | 5 | 19 | 211 | 8 | 195 | 1.73e-57 | 180 |
| Msa0672110 | MtrunA17_Chr4g0025361 | 53.988 | 163 | 62 | 4 | 22 | 184 | 8 | 157 | 5.71e-51 | 163 |
| Msa0672110 | MtrunA17_Chr5g0413381 | 50.000 | 158 | 71 | 2 | 23 | 179 | 12 | 162 | 8.24e-47 | 153 |
| Msa0672110 | MtrunA17_Chr5g0419871 | 46.250 | 160 | 66 | 5 | 21 | 178 | 14 | 155 | 1.81e-35 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0672110 | AT2G45190.1 | 70.283 | 212 | 53 | 6 | 19 | 221 | 19 | 229 | 4.45e-97 | 282 |
| Msa0672110 | AT4G00180.1 | 62.661 | 233 | 59 | 10 | 8 | 219 | 13 | 238 | 6.57e-81 | 242 |
| Msa0672110 | AT4G00180.2 | 61.722 | 209 | 57 | 9 | 32 | 219 | 1 | 207 | 2.74e-68 | 209 |
| Msa0672110 | AT2G45190.2 | 66.867 | 166 | 45 | 6 | 65 | 221 | 1 | 165 | 2.21e-66 | 202 |
| Msa0672110 | AT2G26580.2 | 57.485 | 167 | 49 | 5 | 22 | 186 | 8 | 154 | 1.06e-56 | 177 |
| Msa0672110 | AT2G26580.1 | 57.485 | 167 | 49 | 5 | 22 | 186 | 8 | 154 | 1.06e-56 | 177 |
| Msa0672110 | AT1G08465.1 | 56.897 | 174 | 51 | 5 | 22 | 188 | 7 | 163 | 6.37e-56 | 176 |
| Msa0672110 | AT1G23420.1 | 46.584 | 161 | 84 | 2 | 24 | 182 | 20 | 180 | 4.19e-40 | 137 |
| Msa0672110 | AT1G23420.2 | 46.584 | 161 | 84 | 2 | 24 | 182 | 51 | 211 | 2.03e-39 | 136 |
| Msa0672110 | AT1G69180.1 | 39.490 | 157 | 77 | 2 | 22 | 178 | 18 | 156 | 8.22e-31 | 112 |
Find 74 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTCAAGTTGTTGGTTTA+TGG | 0.128435 | 4_4:+16255852 | Msa0672110:three_prime_UTR |
| CTATTAGCAGGTGGAGGTTT+AGG | 0.195251 | 4_4:-16253633 | None:intergenic |
| CGATGCTACTTAAGTATTAA+AGG | 0.214516 | 4_4:-16252539 | None:intergenic |
| CACTTTCCACACATTCATTT+CGG | 0.297543 | 4_4:+16255438 | Msa0672110:CDS |
| ATCATCAAATCATTTGGATT+TGG | 0.304583 | 4_4:-16253576 | None:intergenic |
| CTTCAACCCTCAAACTCTTA+TGG | 0.305185 | 4_4:+16253149 | Msa0672110:CDS |
| AGAGTTGTTGCTGTTGTTGC+TGG | 0.315337 | 4_4:-16252823 | None:intergenic |
| AAAGAAGGAAAAGACTTTCT+AGG | 0.330189 | 4_4:+16252506 | Msa0672110:five_prime_UTR |
| TATTAGCAGGTGGAGGTTTA+GGG | 0.330394 | 4_4:-16253632 | None:intergenic |
| GCCTCTCTGTGGCTTATATC+AGG | 0.334060 | 4_4:-16255206 | None:intergenic |
| GACTGATCAGTGAAGTTTCT+TGG | 0.340647 | 4_4:-16252684 | None:intergenic |
| TTCTTCACGGGTTGATGATC+AGG | 0.349751 | 4_4:-16255468 | None:intergenic |
| GTGCTCATCATCAAATCATT+TGG | 0.352185 | 4_4:-16253582 | None:intergenic |
| AACAAACACACTTCTTTAGT+AGG | 0.360387 | 4_4:-16255716 | None:intergenic |
| TGTCCAAGGTGAAGCTGATT+AGG | 0.385355 | 4_4:-16253120 | None:intergenic |
| TGTTGCTGTTGTTGCTGGTC+CGG | 0.423782 | 4_4:-16252818 | None:intergenic |
| GAGGACGTGCTTATGAAAGA+TGG | 0.432558 | 4_4:+16255661 | Msa0672110:CDS |
| TGTTAAGTTACTGTTTAGAA+AGG | 0.437401 | 4_4:-16252600 | None:intergenic |
| GGAAGATAAATATGAAAGAA+AGG | 0.442503 | 4_4:-16252578 | None:intergenic |
| ACTGATCAGTGAAGTTTCTT+GGG | 0.455223 | 4_4:-16252683 | None:intergenic |
| TTCATCATCATGTTTGTTGA+AGG | 0.455442 | 4_4:-16253546 | None:intergenic |
| AATTTCTTACGTCTATTAGC+AGG | 0.457462 | 4_4:-16253645 | None:intergenic |
| TTGGTTTATGGTATAATGAA+TGG | 0.468807 | 4_4:+16255864 | Msa0672110:three_prime_UTR |
| GAGATCCAACGTATCAAAGC+TGG | 0.478771 | 4_4:+16255179 | Msa0672110:CDS |
| GAAGAAAGCTAATGTTCGTC+AGG | 0.494623 | 4_4:+16255485 | Msa0672110:CDS |
| CGAACATTAGCTTTCTTCAC+GGG | 0.494923 | 4_4:-16255480 | None:intergenic |
| ACAAACACACTTCTTTAGTA+GGG | 0.496640 | 4_4:-16255715 | None:intergenic |
| GGAACTCTCTGTCTCTTCTC+CGG | 0.501243 | 4_4:-16254608 | None:intergenic |
| CGAAATGAATGTGTGGAAAG+TGG | 0.502844 | 4_4:-16255437 | None:intergenic |
| ACACATACCATAAGAGTTTG+AGG | 0.506984 | 4_4:-16253156 | None:intergenic |
| GAAGATAAATATGAAAGAAA+GGG | 0.507752 | 4_4:-16252577 | None:intergenic |
| TTGTTGCTGGTCCGGTGAAA+AGG | 0.508490 | 4_4:-16252810 | None:intergenic |
| ATAAATAAAATATCAACAAA+GGG | 0.510950 | 4_4:+16252481 | None:intergenic |
| GGTATAATGAATGGTGGGAG+AGG | 0.513224 | 4_4:+16255873 | Msa0672110:three_prime_UTR |
| CACATACCATAAGAGTTTGA+GGG | 0.516195 | 4_4:-16253155 | None:intergenic |
| AATAAATAAAATATCAACAA+AGG | 0.517906 | 4_4:+16252480 | None:intergenic |
| ACAGCAACAACTCTCTCCTT+CGG | 0.518591 | 4_4:+16252832 | Msa0672110:CDS |
| GTTAAGTTACTGTTTAGAAA+GGG | 0.520234 | 4_4:-16252599 | None:intergenic |
| TGCAATGGACATAACAAAGC+TGG | 0.526911 | 4_4:-16252856 | None:intergenic |
| CCATAAACCAACAACTTGAA+AGG | 0.529902 | 4_4:-16255852 | None:intergenic |
| GTTTATGGTATAATGAATGG+TGG | 0.530292 | 4_4:+16255867 | Msa0672110:three_prime_UTR |
| ATTAAACTTACTTGATGAAG+CGG | 0.531165 | 4_4:-16254643 | None:intergenic |
| ACGAACATTAGCTTTCTTCA+CGG | 0.533864 | 4_4:-16255481 | None:intergenic |
| AGGTGAAGCTGATTAGGAGC+AGG | 0.535879 | 4_4:-16253114 | None:intergenic |
| TTACGTCTATTAGCAGGTGG+AGG | 0.545636 | 4_4:-16253639 | None:intergenic |
| CTGGTCCGGTGAAAAGGAAG+TGG | 0.549720 | 4_4:-16252804 | None:intergenic |
| AGGACGTGCTTATGAAAGAT+GGG | 0.553995 | 4_4:+16255662 | Msa0672110:CDS |
| TTTCATTGTGTAGGATTCAG+AGG | 0.560695 | 4_4:+16255642 | Msa0672110:intron |
| ATGAAGCGGTTGTAAGCAGA+TGG | 0.561893 | 4_4:-16254629 | None:intergenic |
| TTCTTACGTCTATTAGCAGG+TGG | 0.566691 | 4_4:-16253642 | None:intergenic |
| GCTCCTAATCAGCTTCACCT+TGG | 0.572863 | 4_4:+16253117 | Msa0672110:CDS |
| TATCAACAAAGGGAGAAAGA+AGG | 0.576849 | 4_4:+16252491 | None:intergenic |
| GATTCCCAGCTTTGATACGT+TGG | 0.580008 | 4_4:-16255184 | None:intergenic |
| ACAGTAACTTAACAATCAAG+AGG | 0.585860 | 4_4:+16252609 | Msa0672110:five_prime_UTR |
| AAAGGAAGTGGATGATGAAG+AGG | 0.587043 | 4_4:-16252792 | None:intergenic |
| AGATCCAACGTATCAAAGCT+GGG | 0.600203 | 4_4:+16255180 | Msa0672110:CDS |
| ATCAAGAGGATCAGATCCAT+AGG | 0.607359 | 4_4:+16252623 | Msa0672110:five_prime_UTR |
| ATGATGAGCACTATGAGAGG+AGG | 0.607690 | 4_4:+16253594 | Msa0672110:CDS |
| GAAATGAATGTGTGGAAAGT+GGG | 0.615090 | 4_4:-16255436 | None:intergenic |
| CACGCATGTTAACTGAGAGA+AGG | 0.621310 | 4_4:-16253080 | None:intergenic |
| CATGTTAACTGAGAGAAGGT+TGG | 0.622869 | 4_4:-16253076 | None:intergenic |
| TGATGAGCACTATGAGAGGA+GGG | 0.627664 | 4_4:+16253595 | Msa0672110:CDS |
| ACATAACAAAGCTGGTCCGA+AGG | 0.642303 | 4_4:-16252848 | None:intergenic |
| GGTTGAAGTAAGTGTGTCCA+AGG | 0.648511 | 4_4:-16253134 | None:intergenic |
| GTCTTGAACAAACTTGTGCA+AGG | 0.649953 | 4_4:-16253027 | None:intergenic |
| TTTATGGTATAATGAATGGT+GGG | 0.650395 | 4_4:+16255868 | Msa0672110:three_prime_UTR |
| CAGTGTCACAGAAATTGCAA+TGG | 0.650774 | 4_4:-16252871 | None:intergenic |
| GAAGCTGATTAGGAGCAGGA+AGG | 0.664477 | 4_4:-16253110 | None:intergenic |
| TTTCTGTGACACTGTTCTCG+CGG | 0.670363 | 4_4:+16252880 | Msa0672110:CDS |
| CTGCACTAAAAGCCTCTCTG+TGG | 0.673003 | 4_4:-16255217 | None:intergenic |
| AAGACTGTGACAGTGAGATG+TGG | 0.685505 | 4_4:+16253045 | Msa0672110:CDS |
| TCCTGATATAAGCCACAGAG+AGG | 0.691291 | 4_4:+16255205 | Msa0672110:CDS |
| TTGATGATGAGCACTATGAG+AGG | 0.713114 | 4_4:+16253591 | Msa0672110:CDS |
| ATAAGTCCGAAATGAATGTG+TGG | 0.723401 | 4_4:-16255444 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATAATTTTTAATTTTTAT+TGG | + | chr4_4:16255330-16255349 | Msa0672110:intron | 0.0% |
| !!! | TATAATTTTTAATTTTTATT+GGG | + | chr4_4:16255331-16255350 | Msa0672110:intron | 0.0% |
| !!! | TTTTTTATTTTGTTTTTCTT+AGG | + | chr4_4:16252996-16253015 | Msa0672110:intron | 10.0% |
| !!! | TATTTTGTATTTTTGTATTT+TGG | + | chr4_4:16253422-16253441 | Msa0672110:intron | 10.0% |
| !! | TCTAATTTGAAAATAATATT+GGG | - | chr4_4:16254169-16254188 | None:intergenic | 10.0% |
| !!! | AAATCTATTCAAAATTTTTT+AGG | + | chr4_4:16254317-16254336 | Msa0672110:intron | 10.0% |
| !! | GATAAATTCTTTAAATATTA+GGG | - | chr4_4:16254742-16254761 | None:intergenic | 10.0% |
| !! | TGATAAATTCTTTAAATATT+AGG | - | chr4_4:16254743-16254762 | None:intergenic | 10.0% |
| !!! | ACATAAACATTTTTATTTTT+TGG | + | chr4_4:16254807-16254826 | Msa0672110:intron | 10.0% |
| !!! | TTCTTTTTACTAATTAAAAA+TGG | + | chr4_4:16254940-16254959 | Msa0672110:intron | 10.0% |
| !!! | AATTGAAAATAATCTAAAAT+GGG | - | chr4_4:16255300-16255319 | None:intergenic | 10.0% |
| !! | AAATTGAAAATAATCTAAAA+TGG | - | chr4_4:16255301-16255320 | None:intergenic | 10.0% |
| !! | GAAAAAAAAAGAAAAAAAAA+AGG | - | chr4_4:16255553-16255572 | None:intergenic | 10.0% |
| !! | TTGAAGATTTGTAAATTTAA+TGG | + | chr4_4:16253310-16253329 | Msa0672110:intron | 15.0% |
| !!! | TGTAAATTTAATGGATTATT+TGG | + | chr4_4:16253319-16253338 | Msa0672110:intron | 15.0% |
| !! | ATCAATTTATGAAATTATCT+AGG | + | chr4_4:16253357-16253376 | Msa0672110:intron | 15.0% |
| !!! | ATTTTTGTATTTTGGAAATT+AGG | + | chr4_4:16253430-16253449 | Msa0672110:intron | 15.0% |
| !! | CTCTAATTTGAAAATAATAT+TGG | - | chr4_4:16254170-16254189 | None:intergenic | 15.0% |
| !!! | TTTTTTGATAAAGAAAATGT+TGG | - | chr4_4:16254205-16254224 | None:intergenic | 15.0% |
| !!! | CATTTTCTTTATCAAAAAAT+TGG | + | chr4_4:16254206-16254225 | Msa0672110:intron | 15.0% |
| !!! | CATTCATTTTAAGTTATTTT+TGG | + | chr4_4:16254668-16254687 | Msa0672110:intron | 15.0% |
| !! | TTTAGTATATCAATTGTATT+TGG | + | chr4_4:16254876-16254895 | Msa0672110:intron | 15.0% |
| !! | ATTTGGAGAAAATATTATAA+TGG | + | chr4_4:16254893-16254912 | Msa0672110:intron | 15.0% |
| !! | TTTACTAATTAAAAATGGTA+TGG | + | chr4_4:16254945-16254964 | Msa0672110:intron | 15.0% |
| !! | AAGAAAAATAAATTCATATG+TGG | - | chr4_4:16255032-16255051 | None:intergenic | 15.0% |
| !!! | GATAATTCATTTAACTTTAA+TGG | + | chr4_4:16255069-16255088 | Msa0672110:intron | 15.0% |
| !!! | AAAATATGATTTGATTTTCA+GGG | + | chr4_4:16255154-16255173 | Msa0672110:intron | 15.0% |
| !! | GAAGATAAATATGAAAGAAA+GGG | - | chr4_4:16252580-16252599 | None:intergenic | 20.0% |
| !!! | GATTTTTTGATTTGATTGAT+GGG | - | chr4_4:16252713-16252732 | None:intergenic | 20.0% |
| !!! | TGATTTTTTGATTTGATTGA+TGG | - | chr4_4:16252714-16252733 | None:intergenic | 20.0% |
| !! | AAAAATCAAGAATTCAGAAA+AGG | + | chr4_4:16252726-16252745 | Msa0672110:five_prime_UTR | 20.0% |
| !! | ATCTTAACTCTTAATCAAAA+GGG | - | chr4_4:16252956-16252975 | None:intergenic | 20.0% |
| !! | AATCTTAACTCTTAATCAAA+AGG | - | chr4_4:16252957-16252976 | None:intergenic | 20.0% |
| !!! | ATATATATATGTAGTTTGCT+TGG | - | chr4_4:16253280-16253299 | None:intergenic | 20.0% |
| !! | CAAAAATACAAAATAACCAT+AGG | - | chr4_4:16253417-16253436 | None:intergenic | 20.0% |
| !! | TTGAGTTTAACTAATTATTC+AGG | + | chr4_4:16253506-16253525 | Msa0672110:intron | 20.0% |
| !!! | TTTTGCTTTTGTACATTAAT+TGG | - | chr4_4:16253949-16253968 | None:intergenic | 20.0% |
| !! | AAAAAAGAGAAGGAAAAAAA+AGG | + | chr4_4:16253965-16253984 | Msa0672110:intron | 20.0% |
| !! | AAAGAAAATGTTGGAAATTA+GGG | - | chr4_4:16254196-16254215 | None:intergenic | 20.0% |
| !! | TAAAGAAAATGTTGGAAATT+AGG | - | chr4_4:16254197-16254216 | None:intergenic | 20.0% |
| !! | TACTTCAAACTATTTACAAA+AGG | + | chr4_4:16254282-16254301 | Msa0672110:intron | 20.0% |
| !! | CACATAGAGTAAAAAAAAAA+AGG | - | chr4_4:16254344-16254363 | None:intergenic | 20.0% |
| !!! | AATCAAATCATATTTTGTCA+AGG | - | chr4_4:16255150-16255169 | None:intergenic | 20.0% |
| !!! | CAAAATATGATTTGATTTTC+AGG | + | chr4_4:16255153-16255172 | Msa0672110:intron | 20.0% |
| !!! | TGTATTATTTTCTCATTTGT+GGG | + | chr4_4:16255389-16255408 | Msa0672110:intron | 20.0% |
| !!! | TTCTTTTTTTTTCTTCCTTT+TGG | + | chr4_4:16255560-16255579 | Msa0672110:intron | 20.0% |
| ! | GGAAGATAAATATGAAAGAA+AGG | - | chr4_4:16252581-16252600 | None:intergenic | 25.0% |
| ! | GTTAAGTTACTGTTTAGAAA+GGG | - | chr4_4:16252602-16252621 | None:intergenic | 25.0% |
| ! | TGTTAAGTTACTGTTTAGAA+AGG | - | chr4_4:16252603-16252622 | None:intergenic | 25.0% |
| ! | AGATAGATAAAAACTTCCTA+TGG | - | chr4_4:16252642-16252661 | None:intergenic | 25.0% |
| ! | TATACAACTATCTATTGAGT+TGG | + | chr4_4:16253453-16253472 | Msa0672110:intron | 25.0% |
| ! | AGTTTAACTAATTATTCAGG+AGG | + | chr4_4:16253509-16253528 | Msa0672110:intron | 25.0% |
| ! | ATCATCAAATCATTTGGATT+TGG | - | chr4_4:16253579-16253598 | None:intergenic | 25.0% |
| !! | AACTCAAAAGAAGTGTAAAA+TGG | - | chr4_4:16253908-16253927 | None:intergenic | 25.0% |
| !!! | TTTTCAAGTGAGTTTTGATA+GGG | - | chr4_4:16253997-16254016 | None:intergenic | 25.0% |
| !!! | ATTTTCAAGTGAGTTTTGAT+AGG | - | chr4_4:16253998-16254017 | None:intergenic | 25.0% |
| ! | AGAGAAAACTTATAATGATG+AGG | + | chr4_4:16254457-16254476 | Msa0672110:intron | 25.0% |
| ! | ATTAAACTTACTTGATGAAG+CGG | - | chr4_4:16254646-16254665 | None:intergenic | 25.0% |
| !!! | CAAGAGTACAACATTTTTTT+TGG | + | chr4_4:16254761-16254780 | Msa0672110:intron | 25.0% |
| !!! | ACAACATTTTTTTTGGACAA+AGG | + | chr4_4:16254768-16254787 | Msa0672110:intron | 25.0% |
| !!! | TGCCAAACATTTTGTTATTA+CGG | + | chr4_4:16255004-16255023 | Msa0672110:intron | 25.0% |
| ! | TTCCGTAATAACAAAATGTT+TGG | - | chr4_4:16255009-16255028 | None:intergenic | 25.0% |
| ! | AGTAAGATTCAGAATTTCAT+TGG | - | chr4_4:16255261-16255280 | None:intergenic | 25.0% |
| !! | AGTACACATTTTTATTGCAT+CGG | + | chr4_4:16255366-16255385 | Msa0672110:intron | 25.0% |
| !! | GTGTATTATTTTCTCATTTG+TGG | + | chr4_4:16255388-16255407 | Msa0672110:intron | 25.0% |
| !! | GTATTATTTTCTCATTTGTG+GGG | + | chr4_4:16255390-16255409 | Msa0672110:intron | 25.0% |
| !! | TATTATTTTCTCATTTGTGG+GGG | + | chr4_4:16255391-16255410 | Msa0672110:intron | 25.0% |
| !! | AAAGCATAACTCTTATTTCT+AGG | + | chr4_4:16255599-16255618 | Msa0672110:intron | 25.0% |
| !!! | AAGCATAACTCTTATTTCTA+GGG | + | chr4_4:16255600-16255619 | Msa0672110:intron | 25.0% |
| !! | CTACACAATGAAAGAATTTT+AGG | - | chr4_4:16255635-16255654 | None:intergenic | 25.0% |
| ! | CTAAAATTCTTTCATTGTGT+AGG | + | chr4_4:16255633-16255652 | Msa0672110:intron | 25.0% |
| !!! | TGTGTTTGTTTTATTGTGTA+GGG | + | chr4_4:16255729-16255748 | Msa0672110:three_prime_UTR | 25.0% |
| !!! | TTTTTATCCTTTCAAGTTGT+TGG | + | chr4_4:16255845-16255864 | Msa0672110:three_prime_UTR | 25.0% |
| ! | TTGGTTTATGGTATAATGAA+TGG | + | chr4_4:16255864-16255883 | Msa0672110:three_prime_UTR | 25.0% |
| ! | TTTATGGTATAATGAATGGT+GGG | + | chr4_4:16255868-16255887 | Msa0672110:three_prime_UTR | 25.0% |
| AAAGAAGGAAAAGACTTTCT+AGG | + | chr4_4:16252506-16252525 | Msa0672110:five_prime_UTR | 30.0% | |
| ! | CGATGCTACTTAAGTATTAA+AGG | - | chr4_4:16252542-16252561 | None:intergenic | 30.0% |
| ACAGTAACTTAACAATCAAG+AGG | + | chr4_4:16252609-16252628 | Msa0672110:five_prime_UTR | 30.0% | |
| !! | GTTAATTTTTGTTGTGCCTA+TGG | + | chr4_4:16253398-16253417 | Msa0672110:intron | 30.0% |
| !! | ACTATCTATTGAGTTGGAAT+TGG | + | chr4_4:16253459-16253478 | Msa0672110:intron | 30.0% |
| ! | TTCATCATCATGTTTGTTGA+AGG | - | chr4_4:16253549-16253568 | None:intergenic | 30.0% |
| AATTTCTTACGTCTATTAGC+AGG | - | chr4_4:16253648-16253667 | None:intergenic | 30.0% | |
| ! | AGATTCTTTTGATGCTATCA+TGG | + | chr4_4:16253838-16253857 | Msa0672110:intron | 30.0% |
| ! | GATTCTTTTGATGCTATCAT+GGG | + | chr4_4:16253839-16253858 | Msa0672110:intron | 30.0% |
| GTACAAAAGCAAAAAAGAGA+AGG | + | chr4_4:16253955-16253974 | Msa0672110:intron | 30.0% | |
| TTTCTTGATGTACTTCAAAG+TGG | + | chr4_4:16254029-16254048 | Msa0672110:intron | 30.0% | |
| AGAAACCCTATACAAAATCT+AGG | + | chr4_4:16254229-16254248 | Msa0672110:intron | 30.0% | |
| GAAACCCTATACAAAATCTA+GGG | + | chr4_4:16254230-16254249 | Msa0672110:intron | 30.0% | |
| ! | TTAGCCCTAGATTTTGTATA+GGG | - | chr4_4:16254237-16254256 | None:intergenic | 30.0% |
| ! | TTTAGCCCTAGATTTTGTAT+AGG | - | chr4_4:16254238-16254257 | None:intergenic | 30.0% |
| AAAAATAGAGCTGAATCCAT+TGG | + | chr4_4:16254419-16254438 | Msa0672110:intron | 30.0% | |
| TAATAACAATCACTCTCCAA+TGG | - | chr4_4:16254438-16254457 | None:intergenic | 30.0% | |
| ATTCTGAATCTTACTCTCTT+AGG | + | chr4_4:16255266-16255285 | Msa0672110:intron | 30.0% | |
| !! | GCCATTTATTTTCTTTCAGT+GGG | + | chr4_4:16255413-16255432 | Msa0672110:intron | 30.0% |
| TAAATGTAGATAGCTAGCTA+GGG | - | chr4_4:16255522-16255541 | None:intergenic | 30.0% | |
| ! | TTTTTCACACAAGCAAATGT+AGG | + | chr4_4:16255685-16255704 | Msa0672110:CDS | 30.0% |
| ACAAACACACTTCTTTAGTA+GGG | - | chr4_4:16255718-16255737 | None:intergenic | 30.0% | |
| AACAAACACACTTCTTTAGT+AGG | - | chr4_4:16255719-16255738 | None:intergenic | 30.0% | |
| !!! | GTGTGTTTGTTTTATTGTGT+AGG | + | chr4_4:16255728-16255747 | Msa0672110:three_prime_UTR | 30.0% |
| GTTTATGGTATAATGAATGG+TGG | + | chr4_4:16255867-16255886 | Msa0672110:three_prime_UTR | 30.0% | |
| ACTGATCAGTGAAGTTTCTT+GGG | - | chr4_4:16252686-16252705 | None:intergenic | 35.0% | |
| CACATACCATAAGAGTTTGA+GGG | - | chr4_4:16253158-16253177 | None:intergenic | 35.0% | |
| ACACATACCATAAGAGTTTG+AGG | - | chr4_4:16253159-16253178 | None:intergenic | 35.0% | |
| AGTTGTCAGAGTTTGAATCT+CGG | + | chr4_4:16253227-16253246 | Msa0672110:intron | 35.0% | |
| !! | GCTGAAACACTTTTAAGAAG+AGG | - | chr4_4:16253254-16253273 | None:intergenic | 35.0% |
| GTGCTCATCATCAAATCATT+TGG | - | chr4_4:16253585-16253604 | None:intergenic | 35.0% | |
| ACATGAGAAATGGTGAAGAA+GGG | - | chr4_4:16253771-16253790 | None:intergenic | 35.0% | |
| TACATGAGAAATGGTGAAGA+AGG | - | chr4_4:16253772-16253791 | None:intergenic | 35.0% | |
| AGCATAGCATACATGAGAAA+TGG | - | chr4_4:16253781-16253800 | None:intergenic | 35.0% | |
| ! | TTTTGATGCTATCATGGGAA+AGG | + | chr4_4:16253844-16253863 | Msa0672110:intron | 35.0% |
| GAAGTGTAAAATGGACAGAA+GGG | - | chr4_4:16253899-16253918 | None:intergenic | 35.0% | |
| ! | AGAAGTGTAAAATGGACAGA+AGG | - | chr4_4:16253900-16253919 | None:intergenic | 35.0% |
| !! | TGGATTCAGCTCTATTTTTC+CGG | - | chr4_4:16254418-16254437 | None:intergenic | 35.0% |
| ! | GAAAGAAGAGAGTTCTGATT+TGG | + | chr4_4:16254521-16254540 | Msa0672110:intron | 35.0% |
| !! | GGCCATTTATTTTCTTTCAG+TGG | + | chr4_4:16255412-16255431 | Msa0672110:intron | 35.0% |
| GCCCACTGAAAGAAAATAAA+TGG | - | chr4_4:16255417-16255436 | None:intergenic | 35.0% | |
| GAAATGAATGTGTGGAAAGT+GGG | - | chr4_4:16255439-16255458 | None:intergenic | 35.0% | |
| CACTTTCCACACATTCATTT+CGG | + | chr4_4:16255438-16255457 | Msa0672110:CDS | 35.0% | |
| ATAAGTCCGAAATGAATGTG+TGG | - | chr4_4:16255447-16255466 | None:intergenic | 35.0% | |
| !! | ACGAACATTAGCTTTCTTCA+CGG | - | chr4_4:16255484-16255503 | None:intergenic | 35.0% |
| GTAAATGTAGATAGCTAGCT+AGG | - | chr4_4:16255523-16255542 | None:intergenic | 35.0% | |
| TCATTTAATGTGCTGCCAAA+AGG | - | chr4_4:16255578-16255597 | None:intergenic | 35.0% | |
| TTTCATTGTGTAGGATTCAG+AGG | + | chr4_4:16255642-16255661 | Msa0672110:intron | 35.0% | |
| CCATAAACCAACAACTTGAA+AGG | - | chr4_4:16255855-16255874 | None:intergenic | 35.0% | |
| !! | CCTTTCAAGTTGTTGGTTTA+TGG | + | chr4_4:16255852-16255871 | Msa0672110:three_prime_UTR | 35.0% |
| ATCAAGAGGATCAGATCCAT+AGG | + | chr4_4:16252623-16252642 | Msa0672110:five_prime_UTR | 40.0% | |
| GACTGATCAGTGAAGTTTCT+TGG | - | chr4_4:16252687-16252706 | None:intergenic | 40.0% | |
| AAAGGAAGTGGATGATGAAG+AGG | - | chr4_4:16252795-16252814 | None:intergenic | 40.0% | |
| ! | ATCATCCACTTCCTTTTCAC+CGG | + | chr4_4:16252799-16252818 | Msa0672110:CDS | 40.0% |
| TGCAATGGACATAACAAAGC+TGG | - | chr4_4:16252859-16252878 | None:intergenic | 40.0% | |
| CAGTGTCACAGAAATTGCAA+TGG | - | chr4_4:16252874-16252893 | None:intergenic | 40.0% | |
| GTCTTGAACAAACTTGTGCA+AGG | - | chr4_4:16253030-16253049 | None:intergenic | 40.0% | |
| CATGTTAACTGAGAGAAGGT+TGG | - | chr4_4:16253079-16253098 | None:intergenic | 40.0% | |
| CTTCAACCCTCAAACTCTTA+TGG | + | chr4_4:16253149-16253168 | Msa0672110:CDS | 40.0% | |
| !! | TTGATGATGAGCACTATGAG+AGG | + | chr4_4:16253591-16253610 | Msa0672110:CDS | 40.0% |
| TATTAGCAGGTGGAGGTTTA+GGG | - | chr4_4:16253635-16253654 | None:intergenic | 40.0% | |
| TTCTTACGTCTATTAGCAGG+TGG | - | chr4_4:16253645-16253664 | None:intergenic | 40.0% | |
| AAAATGGACAGAAGGGTTTC+AGG | - | chr4_4:16253892-16253911 | None:intergenic | 40.0% | |
| !! | CAAGTGAGTTTTGATAGGGA+TGG | - | chr4_4:16253993-16254012 | None:intergenic | 40.0% |
| TCACTCAATGTTTGCATGCA+AGG | - | chr4_4:16254380-16254399 | None:intergenic | 40.0% | |
| !! | ATTCAGCTCTATTTTTCCGG+GGG | - | chr4_4:16254415-16254434 | None:intergenic | 40.0% |
| !! | GATTCAGCTCTATTTTTCCG+GGG | - | chr4_4:16254416-16254435 | None:intergenic | 40.0% |
| !! | GGATTCAGCTCTATTTTTCC+GGG | - | chr4_4:16254417-16254436 | None:intergenic | 40.0% |
| AGATCCAACGTATCAAAGCT+GGG | + | chr4_4:16255180-16255199 | Msa0672110:CDS | 40.0% | |
| CGAAATGAATGTGTGGAAAG+TGG | - | chr4_4:16255440-16255459 | None:intergenic | 40.0% | |
| !! | CGAACATTAGCTTTCTTCAC+GGG | - | chr4_4:16255483-16255502 | None:intergenic | 40.0% |
| GAAGAAAGCTAATGTTCGTC+AGG | + | chr4_4:16255485-16255504 | Msa0672110:CDS | 40.0% | |
| AGGACGTGCTTATGAAAGAT+GGG | + | chr4_4:16255662-16255681 | Msa0672110:CDS | 40.0% | |
| ! | AGAGTTGTTGCTGTTGTTGC+TGG | - | chr4_4:16252826-16252845 | None:intergenic | 45.0% |
| ACAGCAACAACTCTCTCCTT+CGG | + | chr4_4:16252832-16252851 | Msa0672110:CDS | 45.0% | |
| ACATAACAAAGCTGGTCCGA+AGG | - | chr4_4:16252851-16252870 | None:intergenic | 45.0% | |
| TTTCTGTGACACTGTTCTCG+CGG | + | chr4_4:16252880-16252899 | Msa0672110:CDS | 45.0% | |
| AAGACTGTGACAGTGAGATG+TGG | + | chr4_4:16253045-16253064 | Msa0672110:CDS | 45.0% | |
| CACGCATGTTAACTGAGAGA+AGG | - | chr4_4:16253083-16253102 | None:intergenic | 45.0% | |
| TGTCCAAGGTGAAGCTGATT+AGG | - | chr4_4:16253123-16253142 | None:intergenic | 45.0% | |
| GGTTGAAGTAAGTGTGTCCA+AGG | - | chr4_4:16253137-16253156 | None:intergenic | 45.0% | |
| ATGATGAGCACTATGAGAGG+AGG | + | chr4_4:16253594-16253613 | Msa0672110:CDS | 45.0% | |
| TGATGAGCACTATGAGAGGA+GGG | + | chr4_4:16253595-16253614 | Msa0672110:CDS | 45.0% | |
| CTATTAGCAGGTGGAGGTTT+AGG | - | chr4_4:16253636-16253655 | None:intergenic | 45.0% | |
| TTACGTCTATTAGCAGGTGG+AGG | - | chr4_4:16253642-16253661 | None:intergenic | 45.0% | |
| GATGCTATCATGGGAAAGGT+AGG | + | chr4_4:16253848-16253867 | Msa0672110:intron | 45.0% | |
| ATGAAGCGGTTGTAAGCAGA+TGG | - | chr4_4:16254632-16254651 | None:intergenic | 45.0% | |
| GAGATCCAACGTATCAAAGC+TGG | + | chr4_4:16255179-16255198 | Msa0672110:CDS | 45.0% | |
| ! | GATTCCCAGCTTTGATACGT+TGG | - | chr4_4:16255187-16255206 | None:intergenic | 45.0% |
| TCCTGATATAAGCCACAGAG+AGG | + | chr4_4:16255205-16255224 | Msa0672110:CDS | 45.0% | |
| !! | TTCTTCACGGGTTGATGATC+AGG | - | chr4_4:16255471-16255490 | None:intergenic | 45.0% |
| GAGGACGTGCTTATGAAAGA+TGG | + | chr4_4:16255661-16255680 | Msa0672110:CDS | 45.0% | |
| ! | GGTATAATGAATGGTGGGAG+AGG | + | chr4_4:16255873-16255892 | Msa0672110:three_prime_UTR | 45.0% |
| !!! | AGTATTTTTTTTAATTAATT+TGG | - | chr4_4:16254142-16254161 | None:intergenic | 5.0% |
| TTGTTGCTGGTCCGGTGAAA+AGG | - | chr4_4:16252813-16252832 | None:intergenic | 50.0% | |
| ! | TGTTGCTGTTGTTGCTGGTC+CGG | - | chr4_4:16252821-16252840 | None:intergenic | 50.0% |
| GAAGCTGATTAGGAGCAGGA+AGG | - | chr4_4:16253113-16253132 | None:intergenic | 50.0% | |
| AGGTGAAGCTGATTAGGAGC+AGG | - | chr4_4:16253117-16253136 | None:intergenic | 50.0% | |
| GCTCCTAATCAGCTTCACCT+TGG | + | chr4_4:16253117-16253136 | Msa0672110:CDS | 50.0% | |
| CATTGCTCAGGCAAACAGAC+AGG | - | chr4_4:16254565-16254584 | None:intergenic | 50.0% | |
| CAAACACACGGACATTGCTC+AGG | - | chr4_4:16254577-16254596 | None:intergenic | 50.0% | |
| GAGCTGGACAAGCAAACACA+CGG | - | chr4_4:16254589-16254608 | None:intergenic | 50.0% | |
| TGTGTTTGCTTGTCCAGCTC+CGG | + | chr4_4:16254589-16254608 | Msa0672110:intron | 50.0% | |
| GGAACTCTCTGTCTCTTCTC+CGG | - | chr4_4:16254611-16254630 | None:intergenic | 50.0% | |
| GCCTCTCTGTGGCTTATATC+AGG | - | chr4_4:16255209-16255228 | None:intergenic | 50.0% | |
| CTGCACTAAAAGCCTCTCTG+TGG | - | chr4_4:16255220-16255239 | None:intergenic | 50.0% | |
| CTGGTCCGGTGAAAAGGAAG+TGG | - | chr4_4:16252807-16252826 | None:intergenic | 55.0% | |
| GTGAGACAGAAGTCTTCCCC+CGG | + | chr4_4:16254396-16254415 | Msa0672110:intron | 55.0% | |
| CTCTGTCTCTTCTCCGGAGC+TGG | - | chr4_4:16254605-16254624 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 16252492 | 16255901 | 16252492 | ID=Msa0672110;Name=Msa0672110 |
| chr4_4 | mRNA | 16252492 | 16255901 | 16252492 | ID=Msa0672110-mRNA-1;Parent=Msa0672110;Name=Msa0672110-mRNA-1;_AED=0.11;_eAED=0.11;_QI=296|1|1|1|1|1|7|178|221 |
| chr4_4 | exon | 16252492 | 16252901 | 16252492 | ID=Msa0672110-mRNA-1:exon:4889;Parent=Msa0672110-mRNA-1 |
| chr4_4 | exon | 16253018 | 16253170 | 16253018 | ID=Msa0672110-mRNA-1:exon:4890;Parent=Msa0672110-mRNA-1 |
| chr4_4 | exon | 16253528 | 16253657 | 16253528 | ID=Msa0672110-mRNA-1:exon:4891;Parent=Msa0672110-mRNA-1 |
| chr4_4 | exon | 16254606 | 16254654 | 16254606 | ID=Msa0672110-mRNA-1:exon:4892;Parent=Msa0672110-mRNA-1 |
| chr4_4 | exon | 16255175 | 16255250 | 16255175 | ID=Msa0672110-mRNA-1:exon:4893;Parent=Msa0672110-mRNA-1 |
| chr4_4 | exon | 16255432 | 16255506 | 16255432 | ID=Msa0672110-mRNA-1:exon:4894;Parent=Msa0672110-mRNA-1 |
| chr4_4 | exon | 16255655 | 16255901 | 16255655 | ID=Msa0672110-mRNA-1:exon:4895;Parent=Msa0672110-mRNA-1 |
| chr4_4 | five_prime_UTR | 16252492 | 16252787 | 16252492 | ID=Msa0672110-mRNA-1:five_prime_utr;Parent=Msa0672110-mRNA-1 |
| chr4_4 | CDS | 16252788 | 16252901 | 16252788 | ID=Msa0672110-mRNA-1:cds;Parent=Msa0672110-mRNA-1 |
| chr4_4 | CDS | 16253018 | 16253170 | 16253018 | ID=Msa0672110-mRNA-1:cds;Parent=Msa0672110-mRNA-1 |
| chr4_4 | CDS | 16253528 | 16253657 | 16253528 | ID=Msa0672110-mRNA-1:cds;Parent=Msa0672110-mRNA-1 |
| chr4_4 | CDS | 16254606 | 16254654 | 16254606 | ID=Msa0672110-mRNA-1:cds;Parent=Msa0672110-mRNA-1 |
| chr4_4 | CDS | 16255175 | 16255250 | 16255175 | ID=Msa0672110-mRNA-1:cds;Parent=Msa0672110-mRNA-1 |
| chr4_4 | CDS | 16255432 | 16255506 | 16255432 | ID=Msa0672110-mRNA-1:cds;Parent=Msa0672110-mRNA-1 |
| chr4_4 | CDS | 16255655 | 16255723 | 16255655 | ID=Msa0672110-mRNA-1:cds;Parent=Msa0672110-mRNA-1 |
| chr4_4 | three_prime_UTR | 16255724 | 16255901 | 16255724 | ID=Msa0672110-mRNA-1:three_prime_utr;Parent=Msa0672110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
