Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391590 | XP_003610062.1 | 87.273 | 385 | 45 | 3 | 1 | 384 | 1 | 382 | 0.0 | 688 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391590 | sp|Q9LVD4|ORP4C_ARATH | 50.781 | 384 | 181 | 4 | 1 | 383 | 1 | 377 | 1.67e-136 | 397 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391590 | G7JUB4 | 87.273 | 385 | 45 | 3 | 1 | 384 | 1 | 382 | 0.0 | 688 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001950 | Msa1391590 | 0.843400 | 1.434572e-58 | -8.615850e-47 |
| Msa0003470 | Msa1391590 | 0.802194 | 6.297804e-49 | -8.615850e-47 |
| Msa0004360 | Msa1391590 | 0.802484 | 5.488635e-49 | -8.615850e-47 |
| Msa0005050 | Msa1391590 | 0.842250 | 2.900622e-58 | -8.615850e-47 |
| Msa0008830 | Msa1391590 | 0.829863 | 4.055888e-55 | -8.615850e-47 |
| Msa0017120 | Msa1391590 | 0.804474 | 2.122924e-49 | -8.615850e-47 |
| Msa0017940 | Msa1391590 | 0.844694 | 6.451932e-59 | -8.615850e-47 |
| Msa0018220 | Msa1391590 | 0.810921 | 9.061245e-51 | -8.615850e-47 |
| Msa0024680 | Msa1391590 | 0.820755 | 5.801240e-53 | -8.615850e-47 |
| Msa0030310 | Msa1391590 | 0.810056 | 1.393568e-50 | -8.615850e-47 |
| Msa0030730 | Msa1391590 | 0.801544 | 8.565040e-49 | -8.615850e-47 |
| Msa0032120 | Msa1391590 | 0.822095 | 2.844671e-53 | -8.615850e-47 |
| Msa0032400 | Msa1391590 | 0.816797 | 4.593762e-52 | -8.615850e-47 |
| Msa0036430 | Msa1391590 | 0.804862 | 1.762132e-49 | -8.615850e-47 |
| Msa0041540 | Msa1391590 | 0.807638 | 4.583759e-50 | -8.615850e-47 |
| Msa0048020 | Msa1391590 | 0.822841 | 1.908555e-53 | -8.615850e-47 |
| Msa0050580 | Msa1391590 | 0.816288 | 5.975639e-52 | -8.615850e-47 |
| Msa0053110 | Msa1391590 | 0.833388 | 5.488610e-56 | -8.615850e-47 |
| Msa0090800 | Msa1391590 | 0.806253 | 8.997288e-50 | -8.615850e-47 |
| Msa0097050 | Msa1391590 | 0.806811 | 6.861623e-50 | -8.615850e-47 |
| Msa0098440 | Msa1391590 | 0.821253 | 4.455511e-53 | -8.615850e-47 |
| Msa0120330 | Msa1391590 | 0.803093 | 4.109630e-49 | -8.615850e-47 |
| Msa1350670 | Msa1391590 | 0.805451 | 1.326592e-49 | -8.615850e-47 |
| Msa1355400 | Msa1391590 | 0.815710 | 8.041929e-52 | -8.615850e-47 |
| Msa1365200 | Msa1391590 | 0.817125 | 3.878382e-52 | -8.615850e-47 |
| Msa1365320 | Msa1391590 | 0.894131 | 3.291370e-75 | -8.615850e-47 |
| Msa1365870 | Msa1391590 | 0.827266 | 1.720053e-54 | -8.615850e-47 |
| Msa1373510 | Msa1391590 | 0.829145 | 6.064207e-55 | -8.615850e-47 |
| Msa1375940 | Msa1391590 | 0.873277 | 1.665451e-67 | -8.615850e-47 |
| Msa1376400 | Msa1391590 | 0.837533 | 4.913021e-57 | -8.615850e-47 |
| Msa1379980 | Msa1391590 | 0.807161 | 5.787479e-50 | -8.615850e-47 |
| Msa1379990 | Msa1391590 | 0.834662 | 2.633281e-56 | -8.615850e-47 |
| Msa1382310 | Msa1391590 | 0.838776 | 2.352172e-57 | -8.615850e-47 |
| Msa1390310 | Msa1391590 | 0.811068 | 8.423170e-51 | -8.615850e-47 |
| Msa1391590 | Msa1398480 | 0.822240 | 2.633601e-53 | -8.615850e-47 |
| Msa1391590 | Msa1399440 | 0.800113 | 1.678214e-48 | -8.615850e-47 |
| Msa1391590 | Msa1420060 | 0.826327 | 2.883791e-54 | -8.615850e-47 |
| Msa1391590 | Msa1438360 | 0.814200 | 1.738576e-51 | -8.615850e-47 |
| Msa1391590 | Msa1447230 | 0.822889 | 1.860621e-53 | -8.615850e-47 |
| Msa0607480 | Msa1391590 | 0.800575 | 1.351328e-48 | -8.615850e-47 |
| Msa0609450 | Msa1391590 | 0.805916 | 1.059607e-49 | -8.615850e-47 |
| Msa0610860 | Msa1391590 | 0.807703 | 4.439542e-50 | -8.615850e-47 |
| Msa0619980 | Msa1391590 | 0.806284 | 8.865272e-50 | -8.615850e-47 |
| Msa0633750 | Msa1391590 | 0.807509 | 4.881394e-50 | -8.615850e-47 |
| Msa0642650 | Msa1391590 | 0.826622 | 2.451536e-54 | -8.615850e-47 |
| Msa0647380 | Msa1391590 | 0.813746 | 2.189790e-51 | -8.615850e-47 |
| Msa0651350 | Msa1391590 | 0.803372 | 3.597327e-49 | -8.615850e-47 |
| Msa0661470 | Msa1391590 | 0.818506 | 1.891733e-52 | -8.615850e-47 |
| Msa0672110 | Msa1391590 | 0.814765 | 1.304107e-51 | -8.615850e-47 |
| Msa0678890 | Msa1391590 | 0.813750 | 2.185199e-51 | -8.615850e-47 |
| Msa0681890 | Msa1391590 | 0.831069 | 2.056508e-55 | -8.615850e-47 |
| Msa0703720 | Msa1391590 | 0.802503 | 5.439058e-49 | -8.615850e-47 |
| Msa0703760 | Msa1391590 | 0.812740 | 3.642300e-51 | -8.615850e-47 |
| Msa0730180 | Msa1391590 | 0.800277 | 1.553983e-48 | -8.615850e-47 |
| Msa0747780 | Msa1391590 | 0.834998 | 2.166498e-56 | -8.615850e-47 |
| Msa0761580 | Msa1391590 | 0.835040 | 2.114883e-56 | -8.615850e-47 |
| Msa0770430 | Msa1391590 | 0.800852 | 1.186608e-48 | -8.615850e-47 |
| Msa0799210 | Msa1391590 | 0.808710 | 2.709740e-50 | -8.615850e-47 |
| Msa0802210 | Msa1391590 | 0.813930 | 1.994338e-51 | -8.615850e-47 |
| Msa0804110 | Msa1391590 | 0.809416 | 1.912568e-50 | -8.615850e-47 |
| Msa0135980 | Msa1391590 | 0.821791 | 3.345971e-53 | -8.615850e-47 |
| Msa0139900 | Msa1391590 | 0.854564 | 1.131588e-61 | -8.615850e-47 |
| Msa0141430 | Msa1391590 | 0.822976 | 1.775361e-53 | -8.615850e-47 |
| Msa0141830 | Msa1391590 | 0.845977 | 2.899685e-59 | -8.615850e-47 |
| Msa0147560 | Msa1391590 | 0.800830 | 1.198742e-48 | -8.615850e-47 |
| Msa0161200 | Msa1391590 | 0.803763 | 2.985260e-49 | -8.615850e-47 |
| Msa0169620 | Msa1391590 | 0.806437 | 8.231641e-50 | -8.615850e-47 |
| Msa0185700 | Msa1391590 | 0.815808 | 7.646336e-52 | -8.615850e-47 |
| Msa0200970 | Msa1391590 | 0.803600 | 3.226181e-49 | -8.615850e-47 |
| Msa0203160 | Msa1391590 | 0.803269 | 3.778254e-49 | -8.615850e-47 |
| Msa0207000 | Msa1391590 | 0.801904 | 7.226017e-49 | -8.615850e-47 |
| Msa0219190 | Msa1391590 | 0.806730 | 7.136010e-50 | -8.615850e-47 |
| Msa0230400 | Msa1391590 | 0.805850 | 1.093731e-49 | -8.615850e-47 |
| Msa1224670 | Msa1391590 | 0.812760 | 3.604613e-51 | -8.615850e-47 |
| Msa1235890 | Msa1391590 | 0.812053 | 5.145113e-51 | -8.615850e-47 |
| Msa1250670 | Msa1391590 | 0.812817 | 3.502852e-51 | -8.615850e-47 |
| Msa1263030 | Msa1391590 | 0.803832 | 2.887871e-49 | -8.615850e-47 |
| Msa1271510 | Msa1391590 | 0.821138 | 4.734066e-53 | -8.615850e-47 |
| Msa1272330 | Msa1391590 | 0.809088 | 2.248752e-50 | -8.615850e-47 |
| Msa1284520 | Msa1391590 | 0.812034 | 5.194841e-51 | -8.615850e-47 |
| Msa1302150 | Msa1391590 | 0.820403 | 6.987216e-53 | -8.615850e-47 |
| Msa1307370 | Msa1391590 | 0.805985 | 1.024729e-49 | -8.615850e-47 |
| Msa1315980 | Msa1391590 | 0.813633 | 2.318635e-51 | -8.615850e-47 |
| Msa1321000 | Msa1391590 | 0.805430 | 1.339769e-49 | -8.615850e-47 |
| Msa1337090 | Msa1391590 | 0.820909 | 5.345575e-53 | -8.615850e-47 |
| Msa1341930 | Msa1391590 | 0.805951 | 1.041603e-49 | -8.615850e-47 |
| Msa0367490 | Msa1391590 | 0.802009 | 6.874592e-49 | -8.615850e-47 |
| Msa0370600 | Msa1391590 | 0.812907 | 3.347692e-51 | -8.615850e-47 |
| Msa0376510 | Msa1391590 | 0.804762 | 1.849209e-49 | -8.615850e-47 |
| Msa0386270 | Msa1391590 | 0.809290 | 2.035362e-50 | -8.615850e-47 |
| Msa0413930 | Msa1391590 | 0.805084 | 1.583664e-49 | -8.615850e-47 |
| Msa0418200 | Msa1391590 | 0.824097 | 9.708478e-54 | -8.615850e-47 |
| Msa0425050 | Msa1391590 | 0.807783 | 4.269821e-50 | -8.615850e-47 |
| Msa0436090 | Msa1391590 | 0.813839 | 2.089336e-51 | -8.615850e-47 |
| Msa0436450 | Msa1391590 | 0.808464 | 3.058370e-50 | -8.615850e-47 |
| Msa0436460 | Msa1391590 | 0.818286 | 2.121422e-52 | -8.615850e-47 |
| Msa0469910 | Msa1391590 | -0.802516 | 5.407273e-49 | -8.615850e-47 |
| Msa0990520 | Msa1391590 | 0.816381 | 5.693855e-52 | -8.615850e-47 |
| Msa1004500 | Msa1391590 | 0.848923 | 4.496218e-60 | -8.615850e-47 |
| Msa1004520 | Msa1391590 | 0.844020 | 9.787883e-59 | -8.615850e-47 |
| Msa1007350 | Msa1391590 | 0.818219 | 2.197691e-52 | -8.615850e-47 |
| Msa1012700 | Msa1391590 | 0.806410 | 8.337399e-50 | -8.615850e-47 |
| Msa1012810 | Msa1391590 | 0.807530 | 4.832675e-50 | -8.615850e-47 |
| Msa1014270 | Msa1391590 | 0.802961 | 4.374828e-49 | -8.615850e-47 |
| Msa1018790 | Msa1391590 | 0.839005 | 2.051508e-57 | -8.615850e-47 |
| Msa1027790 | Msa1391590 | 0.824323 | 8.590047e-54 | -8.615850e-47 |
| Msa1033560 | Msa1391590 | 0.809599 | 1.747346e-50 | -8.615850e-47 |
| Msa1044340 | Msa1391590 | 0.819312 | 1.241047e-52 | -8.615850e-47 |
| Msa1045880 | Msa1391590 | 0.828198 | 1.027071e-54 | -8.615850e-47 |
| Msa1045970 | Msa1391590 | 0.835913 | 1.272358e-56 | -8.615850e-47 |
| Msa1046870 | Msa1391590 | 0.847812 | 9.127561e-60 | -8.615850e-47 |
| Msa1054240 | Msa1391590 | 0.802032 | 6.798831e-49 | -8.615850e-47 |
| Msa1061180 | Msa1391590 | 0.822393 | 2.426088e-53 | -8.615850e-47 |
| Msa1061500 | Msa1391590 | 0.800991 | 1.111357e-48 | -8.615850e-47 |
| Msa1094420 | Msa1391590 | 0.803485 | 3.408301e-49 | -8.615850e-47 |
| Msa1095470 | Msa1391590 | 0.801305 | 9.584764e-49 | -8.615850e-47 |
| Msa1100700 | Msa1391590 | 0.823952 | 1.049630e-53 | -8.615850e-47 |
| Msa1103670 | Msa1391590 | 0.812588 | 3.931367e-51 | -8.615850e-47 |
| Msa1106560 | Msa1391590 | 0.827118 | 1.866698e-54 | -8.615850e-47 |
| Msa1106810 | Msa1391590 | 0.811842 | 5.717488e-51 | -8.615850e-47 |
| Msa0239660 | Msa1391590 | 0.824105 | 9.665831e-54 | -8.615850e-47 |
| Msa0246690 | Msa1391590 | 0.839257 | 1.765578e-57 | -8.615850e-47 |
| Msa0257310 | Msa1391590 | 0.818260 | 2.150326e-52 | -8.615850e-47 |
| Msa0267760 | Msa1391590 | 0.805678 | 1.188489e-49 | -8.615850e-47 |
| Msa0274780 | Msa1391590 | 0.810539 | 1.096001e-50 | -8.615850e-47 |
| Msa0277640 | Msa1391590 | 0.811025 | 8.603186e-51 | -8.615850e-47 |
| Msa0317260 | Msa1391590 | 0.807959 | 3.916703e-50 | -8.615850e-47 |
| Msa1112610 | Msa1391590 | 0.827896 | 1.214110e-54 | -8.615850e-47 |
| Msa1134400 | Msa1391590 | 0.835099 | 2.044034e-56 | -8.615850e-47 |
| Msa1135690 | Msa1391590 | 0.813564 | 2.401790e-51 | -8.615850e-47 |
| Msa1135870 | Msa1391590 | 0.800870 | 1.176807e-48 | -8.615850e-47 |
| Msa1147270 | Msa1391590 | 0.812030 | 5.203355e-51 | -8.615850e-47 |
| Msa1154670 | Msa1391590 | 0.800375 | 1.484719e-48 | -8.615850e-47 |
| Msa1159100 | Msa1391590 | 0.810702 | 1.010541e-50 | -8.615850e-47 |
| Msa1175750 | Msa1391590 | 0.811312 | 7.457272e-51 | -8.615850e-47 |
| Msa1183390 | Msa1391590 | 0.817057 | 4.017402e-52 | -8.615850e-47 |
| Msa1197110 | Msa1391590 | 0.814342 | 1.617833e-51 | -8.615850e-47 |
| Msa1200920 | Msa1391590 | 0.810889 | 9.208575e-51 | -8.615850e-47 |
| Msa1223840 | Msa1391590 | 0.816661 | 4.929764e-52 | -8.615850e-47 |
| Msa0485280 | Msa1391590 | 0.808392 | 3.167352e-50 | -8.615850e-47 |
| Msa0490300 | Msa1391590 | 0.802025 | 6.822132e-49 | -8.615850e-47 |
| Msa0506760 | Msa1391590 | 0.814107 | 1.822710e-51 | -8.615850e-47 |
| Msa0508400 | Msa1391590 | 0.817826 | 2.696185e-52 | -8.615850e-47 |
| Msa0526700 | Msa1391590 | 0.803461 | 3.447480e-49 | -8.615850e-47 |
| Msa0526710 | Msa1391590 | 0.800020 | 1.752760e-48 | -8.615850e-47 |
| Msa0527600 | Msa1391590 | 0.808031 | 3.782565e-50 | -8.615850e-47 |
| Msa0532840 | Msa1391590 | 0.814766 | 1.303571e-51 | -8.615850e-47 |
| Msa0533010 | Msa1391590 | 0.811495 | 6.803342e-51 | -8.615850e-47 |
| Msa0538570 | Msa1391590 | 0.813992 | 1.933052e-51 | -8.615850e-47 |
| Msa0546380 | Msa1391590 | 0.808077 | 3.697355e-50 | -8.615850e-47 |
| Msa0546740 | Msa1391590 | 0.802266 | 6.085569e-49 | -8.615850e-47 |
| Msa0546840 | Msa1391590 | 0.830216 | 3.327795e-55 | -8.615850e-47 |
| Msa0555910 | Msa1391590 | 0.800303 | 1.535283e-48 | -8.615850e-47 |
| Msa0578900 | Msa1391590 | 0.807896 | 4.039517e-50 | -8.615850e-47 |
| Msa0581460 | Msa1391590 | 0.843965 | 1.012604e-58 | -8.615850e-47 |
| Msa0594390 | Msa1391590 | 0.826548 | 2.554164e-54 | -8.615850e-47 |
| Msa0600390 | Msa1391590 | 0.810006 | 1.428574e-50 | -8.615850e-47 |
| Msa0873190 | Msa1391590 | 0.840506 | 8.348470e-58 | -8.615850e-47 |
| Msa0874760 | Msa1391590 | 0.803233 | 3.844312e-49 | -8.615850e-47 |
| Msa0890250 | Msa1391590 | 0.802156 | 6.412404e-49 | -8.615850e-47 |
| Msa0903330 | Msa1391590 | 0.826189 | 3.110025e-54 | -8.615850e-47 |
| Msa0905550 | Msa1391590 | 0.811944 | 5.432336e-51 | -8.615850e-47 |
| Msa0906370 | Msa1391590 | 0.817798 | 2.735548e-52 | -8.615850e-47 |
| Msa0925160 | Msa1391590 | 0.810161 | 1.322907e-50 | -8.615850e-47 |
| Msa0930330 | Msa1391590 | 0.801213 | 1.001242e-48 | -8.615850e-47 |
| Msa0931480 | Msa1391590 | 0.810699 | 1.012517e-50 | -8.615850e-47 |
| Msa0937550 | Msa1391590 | 0.815375 | 9.548846e-52 | -8.615850e-47 |
| Msa0938430 | Msa1391590 | 0.847556 | 1.073516e-59 | -8.615850e-47 |
| Msa0955260 | Msa1391590 | 0.804965 | 1.677009e-49 | -8.615850e-47 |
| Msa0958020 | Msa1391590 | 0.807025 | 6.182233e-50 | -8.615850e-47 |
| Msa0975580 | Msa1391590 | 0.831225 | 1.883277e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391590 | MtrunA17_Chr4g0071891 | 87.725 | 334 | 38 | 2 | 52 | 384 | 7 | 338 | 0.0 | 608 |
| Msa1391590 | MtrunA17_Chr2g0298561 | 68.504 | 381 | 116 | 3 | 4 | 384 | 6 | 382 | 0.0 | 535 |
| Msa1391590 | MtrunA17_Chr2g0298571 | 64.583 | 384 | 129 | 4 | 2 | 384 | 7 | 384 | 1.67e-179 | 504 |
| Msa1391590 | MtrunA17_Chr4g0071881 | 62.141 | 383 | 140 | 4 | 2 | 381 | 13 | 393 | 9.05e-170 | 479 |
| Msa1391590 | MtrunA17_Chr4g0031691 | 27.035 | 344 | 208 | 12 | 44 | 361 | 78 | 404 | 6.91e-21 | 94.0 |
| Msa1391590 | MtrunA17_Chr7g0238731 | 26.879 | 346 | 206 | 14 | 44 | 361 | 82 | 408 | 7.66e-17 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391590 | AT5G57240.2 | 50.781 | 384 | 181 | 4 | 1 | 383 | 1 | 377 | 1.70e-137 | 397 |
| Msa1391590 | AT5G57240.5 | 50.781 | 384 | 181 | 4 | 1 | 383 | 1 | 377 | 1.70e-137 | 397 |
| Msa1391590 | AT5G57240.1 | 50.781 | 384 | 181 | 4 | 1 | 383 | 1 | 377 | 1.70e-137 | 397 |
| Msa1391590 | AT4G25850.1 | 52.219 | 383 | 175 | 4 | 1 | 382 | 6 | 381 | 9.37e-137 | 395 |
| Msa1391590 | AT4G25850.2 | 52.219 | 383 | 175 | 4 | 1 | 382 | 108 | 483 | 4.07e-135 | 395 |
| Msa1391590 | AT5G57240.4 | 47.677 | 409 | 181 | 5 | 1 | 383 | 1 | 402 | 1.42e-131 | 383 |
| Msa1391590 | AT5G57240.3 | 47.677 | 409 | 181 | 5 | 1 | 383 | 1 | 402 | 1.42e-131 | 383 |
| Msa1391590 | AT4G25860.2 | 49.608 | 383 | 185 | 4 | 1 | 382 | 1 | 376 | 1.71e-127 | 372 |
| Msa1391590 | AT4G25860.1 | 49.608 | 383 | 185 | 4 | 1 | 382 | 7 | 382 | 2.12e-127 | 372 |
| Msa1391590 | AT4G25850.3 | 52.985 | 268 | 119 | 3 | 1 | 267 | 6 | 267 | 2.40e-91 | 276 |
| Msa1391590 | AT5G59420.1 | 26.531 | 343 | 209 | 12 | 44 | 360 | 77 | 402 | 1.02e-17 | 84.7 |
| Msa1391590 | AT5G02100.2 | 27.801 | 241 | 144 | 11 | 44 | 272 | 77 | 299 | 3.89e-14 | 73.2 |
Find 117 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAGTCAAAAGGGGAAATT+TGG | 0.145591 | tig0021440:-54222 | Msa1391590:CDS |
| AGTACTTGCTGTAATGTATT+TGG | 0.169490 | tig0021440:+57535 | None:intergenic |
| CCACCCTATAATTATTTATC+TGG | 0.183577 | tig0021440:-54111 | Msa1391590:exon |
| ACTACACGACCACAGAAATT+TGG | 0.188123 | tig0021440:-57091 | Msa1391590:CDS |
| AACAGAATCTGCTCTTGTTT+GGG | 0.210716 | tig0021440:-54341 | Msa1391590:CDS |
| AGACAATCTTTCTTTGGATT+TGG | 0.216954 | tig0021440:-55067 | Msa1391590:CDS |
| CCACCTACCTTGTTTATAAA+TGG | 0.221520 | tig0021440:-57840 | Msa1391590:intron |
| AGAAATCTGAATAAGAAATT+TGG | 0.242852 | tig0021440:+55172 | None:intergenic |
| CAACAGAATCTGCTCTTGTT+TGG | 0.245208 | tig0021440:-54342 | Msa1391590:CDS |
| CATATGTCTCTCCATGATTA+TGG | 0.251319 | tig0021440:+55206 | None:intergenic |
| CTGCTACCAGGCCTGTTTCT+AGG | 0.260032 | tig0021440:+55104 | None:intergenic |
| GCTCCCTACAATCCCATTCT+TGG | 0.262230 | tig0021440:-57064 | Msa1391590:CDS |
| TTCCAATTCCTGGTATTGAT+TGG | 0.273123 | tig0021440:-55150 | Msa1391590:CDS |
| TACACTAGACAATCTTTCTT+TGG | 0.278088 | tig0021440:-55073 | Msa1391590:CDS |
| GGAAATCGAAGACGGATAAA+AGG | 0.297030 | tig0021440:-55040 | Msa1391590:CDS |
| GACAATCTTTCTTTGGATTT+GGG | 0.297690 | tig0021440:-55066 | Msa1391590:CDS |
| TTCAGATTTCTTCCAATTCC+TGG | 0.299189 | tig0021440:-55160 | Msa1391590:CDS |
| ATAAAGTTCTAAATGCTTGC+AGG | 0.314021 | tig0021440:-57951 | Msa1391590:five_prime_UTR |
| AGATCCAGATAAATAATTAT+AGG | 0.317722 | tig0021440:+54107 | None:intergenic |
| TTTATAACATTGACGGTCAT+TGG | 0.319680 | tig0021440:-54985 | Msa1391590:CDS |
| AGGGTGGCAATAGGAGCATT+TGG | 0.340915 | tig0021440:+54127 | None:intergenic |
| TCCAATTCCTGGTATTGATT+GGG | 0.344320 | tig0021440:-55149 | Msa1391590:CDS |
| GATCCTTAACAAAAGGAGTA+TGG | 0.346607 | tig0021440:+54561 | None:intergenic |
| ATCTGATCTGTCACGCTTCA+AGG | 0.378726 | tig0021440:-57485 | Msa1391590:intron |
| TCCCCAATCGTTGCTTATGA+TGG | 0.379990 | tig0021440:+54303 | None:intergenic |
| GATCCAGATAAATAATTATA+GGG | 0.385472 | tig0021440:+54108 | None:intergenic |
| ACCCAATCAATACCAGGAAT+TGG | 0.388589 | tig0021440:+55148 | None:intergenic |
| AAGAGAAGTAAGTAAGGATA+AGG | 0.410294 | tig0021440:-57903 | Msa1391590:five_prime_UTR |
| AATAATTATAGGGTGGCAAT+AGG | 0.420289 | tig0021440:+54118 | None:intergenic |
| TCTCCACTTCCAAAGTTTGT+TGG | 0.426253 | tig0021440:-55419 | Msa1391590:intron |
| ACTATCCGGTGCCTAGAAAC+AGG | 0.426852 | tig0021440:-55115 | Msa1391590:CDS |
| TGAGTCACTATAAAATGTTT+AGG | 0.427110 | tig0021440:+54196 | None:intergenic |
| CGAGGAAAGAGAAGTAAGTA+AGG | 0.427797 | tig0021440:-57909 | Msa1391590:five_prime_UTR |
| ACAGTTCCAGCCATCTTCAT+TGG | 0.435258 | tig0021440:+54171 | None:intergenic |
| AATGTTCTTTATAACATTGA+CGG | 0.438522 | tig0021440:-54992 | Msa1391590:CDS |
| TTATAACATTGACGGTCATT+GGG | 0.448664 | tig0021440:-54984 | Msa1391590:CDS |
| ATGGTGGGTTTCACCAAGAA+TGG | 0.451451 | tig0021440:+57051 | None:intergenic |
| TTAGAGAAAGAGAGTCAAAA+GGG | 0.454350 | tig0021440:-54231 | Msa1391590:CDS |
| AGCCATCATAAGCAACGATT+GGG | 0.455090 | tig0021440:-54305 | Msa1391590:CDS |
| AGAGTCAAAAGGGGAAATTT+GGG | 0.456782 | tig0021440:-54221 | Msa1391590:CDS |
| AATCGTTGCTTATGATGGCT+TGG | 0.457816 | tig0021440:+54308 | None:intergenic |
| TGTCAAGCAACCAGACCAAT+TGG | 0.461058 | tig0021440:-53995 | Msa1391590:three_prime_UTR |
| CTTAGAGAAAGAGAGTCAAA+AGG | 0.461372 | tig0021440:-54232 | Msa1391590:CDS |
| CCTTAACGTCTTGCTCGAAC+AGG | 0.465737 | tig0021440:-57014 | Msa1391590:intron |
| TCTTTCTTTGGATTTGGGTC+GGG | 0.467324 | tig0021440:-55061 | Msa1391590:CDS |
| GGGTGGCAATAGGAGCATTT+GGG | 0.468418 | tig0021440:+54128 | None:intergenic |
| ATCTTTCTTTGGATTTGGGT+CGG | 0.469873 | tig0021440:-55062 | Msa1391590:CDS |
| AATTAATATGATAAACATGT+TGG | 0.473006 | tig0021440:-54020 | Msa1391590:three_prime_UTR |
| TAAGTCTCTTCAAGAATGTT+CGG | 0.473557 | tig0021440:-57513 | Msa1391590:CDS |
| GAATGATCAGTGCGTATTGA+TGG | 0.473999 | tig0021440:+57875 | None:intergenic |
| ACCTCTAGATCCTTAACAAA+AGG | 0.474417 | tig0021440:+54554 | None:intergenic |
| CAAGTCTACTCCTGTGGCTG+TGG | 0.475561 | tig0021440:+57183 | None:intergenic |
| TACCATTGAAGCTGTGACTT+AGG | 0.485158 | tig0021440:+57223 | None:intergenic |
| TTCACCAAGAATGGGATTGT+AGG | 0.487044 | tig0021440:+57060 | None:intergenic |
| CTCTTCAAGAATGTTCGGTT+AGG | 0.494318 | tig0021440:-57508 | Msa1391590:CDS |
| GAAACCCACCATGTTTCTAA+AGG | 0.495301 | tig0021440:-57040 | Msa1391590:CDS |
| AAACCCACCATGTTTCTAAA+GGG | 0.496469 | tig0021440:-57039 | Msa1391590:CDS |
| TTACCAACAAACTTTGGAAG+TGG | 0.498053 | tig0021440:+55416 | None:intergenic |
| TGGTGGGTTTCACCAAGAAT+GGG | 0.499357 | tig0021440:+57052 | None:intergenic |
| GCAGGTTTCACACCATCCTC+AGG | 0.503834 | tig0021440:-55498 | Msa1391590:intron |
| CTGTGACTTAGGCATGTTGA+AGG | 0.504962 | tig0021440:+57234 | None:intergenic |
| CCTGTTCGAGCAAGACGTTA+AGG | 0.505938 | tig0021440:+57014 | None:intergenic |
| AAGCCATCATAAGCAACGAT+TGG | 0.513927 | tig0021440:-54306 | Msa1391590:CDS |
| TCACCAAGAATGGGATTGTA+GGG | 0.514686 | tig0021440:+57061 | None:intergenic |
| CTCATACCAATGAAGATGGC+TGG | 0.515393 | tig0021440:-54177 | Msa1391590:CDS |
| CAACTGCACCTCCATAATCA+TGG | 0.525416 | tig0021440:-55217 | Msa1391590:CDS |
| TGCCTAAGTCACAGCTTCAA+TGG | 0.525691 | tig0021440:-57225 | Msa1391590:CDS |
| AAGTCACAGCTTCAATGGTA+TGG | 0.534057 | tig0021440:-57220 | Msa1391590:CDS |
| GGGTTGGCAATGTCACTATC+CGG | 0.534777 | tig0021440:-55129 | Msa1391590:CDS |
| AACAAATCATCGGATTCTGA+TGG | 0.535295 | tig0021440:-57571 | Msa1391590:CDS |
| TGTGTCTATTCCACAGCCAC+AGG | 0.535366 | tig0021440:-57193 | Msa1391590:CDS |
| GAAATCGAAGACGGATAAAA+GGG | 0.537567 | tig0021440:-55039 | Msa1391590:CDS |
| ACTGTTCACCAATTCAAAAG+TGG | 0.544922 | tig0021440:-54153 | Msa1391590:CDS |
| GTGACTCATACCAATGAAGA+TGG | 0.549751 | tig0021440:-54181 | Msa1391590:CDS |
| ATTCCTGGTATTGATTGGGT+TGG | 0.551107 | tig0021440:-55145 | Msa1391590:CDS |
| GACTTATATCAGTAGTAGCA+TGG | 0.557193 | tig0021440:-57123 | Msa1391590:CDS |
| ACAGAATCTGCTCTTGTTTG+GGG | 0.557754 | tig0021440:-54340 | Msa1391590:CDS |
| ACAAATCATCGGATTCTGAT+GGG | 0.561719 | tig0021440:-57570 | Msa1391590:CDS |
| ACATTGACGGTCATTGGGAT+AGG | 0.562966 | tig0021440:-54979 | Msa1391590:intron |
| TGTAGCTCAATTCTGCTACC+AGG | 0.567744 | tig0021440:+55092 | None:intergenic |
| TTTCCATCTGATCAGTGGCA+TGG | 0.571356 | tig0021440:+55465 | None:intergenic |
| CCAGGCCTGTTTCTAGGCAC+CGG | 0.578301 | tig0021440:+55110 | None:intergenic |
| AAATTATAAATGCAGGTACA+GGG | 0.580423 | tig0021440:-55267 | Msa1391590:intron |
| TAAGGTTCCCTTTAGAAACA+TGG | 0.582927 | tig0021440:+57032 | None:intergenic |
| AATAGACAACAACAAATCAT+CGG | 0.591062 | tig0021440:-57581 | Msa1391590:CDS |
| ATTCCATGCCACTGATCAGA+TGG | 0.593014 | tig0021440:-55468 | Msa1391590:CDS |
| GTTTAGCAAGTCTACTCCTG+TGG | 0.609510 | tig0021440:+57177 | None:intergenic |
| TTGTTGTCTATTGTTGCGAG+TGG | 0.612182 | tig0021440:+57592 | None:intergenic |
| AATGATCAGTGCGTATTGAT+GGG | 0.614080 | tig0021440:+57876 | None:intergenic |
| CCGGTGCCTAGAAACAGGCC+TGG | 0.615502 | tig0021440:-55110 | Msa1391590:CDS |
| CTGTTCACCAATTCAAAAGT+GGG | 0.616115 | tig0021440:-54152 | Msa1391590:CDS |
| GTTCCCTTTAGAAACATGGT+GGG | 0.616437 | tig0021440:+57036 | None:intergenic |
| CAAACAAGAGCAGATTCTGT+TGG | 0.621500 | tig0021440:+54343 | None:intergenic |
| CGATTGGGGAAAAGCAAGAG+AGG | 0.622181 | tig0021440:-54290 | Msa1391590:CDS |
| TTGCTAAACAACATCAACAA+TGG | 0.626138 | tig0021440:-57163 | Msa1391590:CDS |
| GGTTCCCTTTAGAAACATGG+TGG | 0.629919 | tig0021440:+57035 | None:intergenic |
| GGGGTAGAAGTTGACATGCA+TGG | 0.630449 | tig0021440:-55247 | Msa1391590:CDS |
| AAGAGAGGCAAAGAACACTC+TGG | 0.634477 | tig0021440:-54275 | Msa1391590:CDS |
| CAAACTTTGGAAGTGGAGAG+TGG | 0.635431 | tig0021440:+55423 | None:intergenic |
| TTTGTGTTCTTAAGTTTGCG+AGG | 0.642670 | tig0021440:-57927 | Msa1391590:five_prime_UTR |
| TTGCCAACCCAATCAATACC+AGG | 0.642684 | tig0021440:+55142 | None:intergenic |
| TTGGGTCGGGAAATCGAAGA+CGG | 0.645859 | tig0021440:-55048 | Msa1391590:CDS |
| CCAGATAAATAATTATAGGG+TGG | 0.646503 | tig0021440:+54111 | None:intergenic |
| TTAGGCATGTTGAAGGTAGG+TGG | 0.647292 | tig0021440:+57241 | None:intergenic |
| GTACCATTTATAAACAAGGT+AGG | 0.648055 | tig0021440:+57837 | None:intergenic |
| ATGTCTCTCCATGATTATGG+AGG | 0.650308 | tig0021440:+55209 | None:intergenic |
| GCCATCATAAGCAACGATTG+GGG | 0.655456 | tig0021440:-54304 | Msa1391590:CDS |
| GACTTAGGCATGTTGAAGGT+AGG | 0.658758 | tig0021440:+57238 | None:intergenic |
| AATTATAAATGCAGGTACAG+GGG | 0.662926 | tig0021440:-55266 | Msa1391590:intron |
| TAGAGAAAGAGAGTCAAAAG+GGG | 0.666484 | tig0021440:-54230 | Msa1391590:CDS |
| GGAGCAAATCCAAATTTCTG+TGG | 0.677683 | tig0021440:+57082 | None:intergenic |
| AGAGGCAAAGAACACTCTGG+AGG | 0.685308 | tig0021440:-54272 | Msa1391590:CDS |
| CCATTTATAAACAAGGTAGG+TGG | 0.690526 | tig0021440:+57840 | None:intergenic |
| GAACGTACCATTTATAAACA+AGG | 0.693899 | tig0021440:+57833 | None:intergenic |
| GGAATGCAGATACCTGAGGA+TGG | 0.705504 | tig0021440:+55486 | None:intergenic |
| ACACTCTGGAGGAAACTCAG+AGG | 0.724153 | tig0021440:-54261 | Msa1391590:CDS |
| GCATGGAATGCAGATACCTG+AGG | 0.732347 | tig0021440:+55482 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAAATTTAAAGTGATAA+TGG | + | tig0021440:55310-55329 | None:intergenic | 10.0% |
| !!! | TAAAAAGAAATTTTTTTCTT+AGG | - | tig0021440:55415-55434 | Msa1391590:intron | 10.0% |
| !!! | TTTTATTATTATTGATTTTG+AGG | + | tig0021440:56661-56680 | None:intergenic | 10.0% |
| !! | TAATTACGTAAATAATATAT+AGG | + | tig0021440:57249-57268 | None:intergenic | 10.0% |
| !! | ATATATACAATATATCTTTC+TGG | - | tig0021440:54139-54158 | Msa1391590:CDS | 15.0% |
| !! | TATCTCATAATGTATTTATT+TGG | - | tig0021440:54238-54257 | Msa1391590:CDS | 15.0% |
| !! | TCAATAAAAATATATGGATT+AGG | + | tig0021440:54620-54639 | None:intergenic | 15.0% |
| !! | AATTGGTCAATAAAAATATA+TGG | + | tig0021440:54626-54645 | None:intergenic | 15.0% |
| !!! | TTTGTATTTTGTTTAAAACT+TGG | - | tig0021440:55039-55058 | Msa1391590:CDS | 15.0% |
| !! | ACTAGTTAAAGATTAAAAAA+TGG | + | tig0021440:55507-55526 | None:intergenic | 15.0% |
| !!! | ATATGATTCAATTTTAGATA+TGG | - | tig0021440:55981-56000 | Msa1391590:intron | 15.0% |
| !!! | ACAAGAATTATAATTTTAAG+TGG | + | tig0021440:56032-56051 | None:intergenic | 15.0% |
| !! | ACTTAAAATTATAATTCTTG+TGG | - | tig0021440:56031-56050 | Msa1391590:intron | 15.0% |
| !!! | TATTCGATTCTTTTTAATTT+AGG | + | tig0021440:56304-56323 | None:intergenic | 15.0% |
| !! | ATAAAACAAATTATAAATGC+AGG | - | tig0021440:56675-56694 | Msa1391590:intron | 15.0% |
| !!! | ATTTTATATGATTAGGATTT+AGG | + | tig0021440:57283-57302 | None:intergenic | 15.0% |
| !! | AAAAATGAAAAAGGATATAA+AGG | + | tig0021440:57497-57516 | None:intergenic | 15.0% |
| !! | TCACATTAAAAAAATGAAAA+AGG | + | tig0021440:57506-57525 | None:intergenic | 15.0% |
| !! | AATTAATATGATAAACATGT+TGG | - | tig0021440:57929-57948 | Msa1391590:five_prime_UTR | 15.0% |
| !! | AAATAAAATTCAAGATGGAT+CGG | + | tig0021440:54169-54188 | None:intergenic | 20.0% |
| !! | TGATGAAATAAAATTCAAGA+TGG | + | tig0021440:54174-54193 | None:intergenic | 20.0% |
| !! | ATACATTATGAGATATACAT+TGG | + | tig0021440:54233-54252 | None:intergenic | 20.0% |
| !! | AGATCAAATGTAAATTTCAT+AGG | + | tig0021440:54521-54540 | None:intergenic | 20.0% |
| !!! | AGATTTTAGGTTCAATTTTA+TGG | + | tig0021440:55179-55198 | None:intergenic | 20.0% |
| !!! | TATTTTGCCGTTATTTATTT+TGG | - | tig0021440:55278-55297 | Msa1391590:intron | 20.0% |
| !! | GAAATGACCAAAATAAATAA+CGG | + | tig0021440:55288-55307 | None:intergenic | 20.0% |
| !! | AATCTTTAACTAGTATCTTA+AGG | - | tig0021440:55513-55532 | Msa1391590:intron | 20.0% |
| !! | TACTTATTATCTTTGATATG+AGG | - | tig0021440:55683-55702 | Msa1391590:intron | 20.0% |
| !! | AATTAATTTCGATACTTCAT+GGG | + | tig0021440:55814-55833 | None:intergenic | 20.0% |
| !! | AAATTAATTTCGATACTTCA+TGG | + | tig0021440:55815-55834 | None:intergenic | 20.0% |
| !! | ATATTATATTTGCACATGTT+GGG | + | tig0021440:56102-56121 | None:intergenic | 20.0% |
| !!! | ATTATTATTGATTTTGAGGA+TGG | + | tig0021440:56657-56676 | None:intergenic | 20.0% |
| !! | AGAAATCTGAATAAGAAATT+TGG | + | tig0021440:56780-56799 | None:intergenic | 20.0% |
| !! | AATGTTCTTTATAACATTGA+CGG | - | tig0021440:56957-56976 | Msa1391590:intron | 20.0% |
| !!! | CAGCATTATTTTATATGATT+AGG | + | tig0021440:57290-57309 | None:intergenic | 20.0% |
| !! | GATCCAGATAAATAATTATA+GGG | + | tig0021440:57844-57863 | None:intergenic | 20.0% |
| !! | AGATCCAGATAAATAATTAT+AGG | + | tig0021440:57845-57864 | None:intergenic | 20.0% |
| ! | TGTGAAAAATCTAAACTAAC+CGG | - | tig0021440:54269-54288 | Msa1391590:CDS | 25.0% |
| ! | TATTTGTGTATTTGTAATGC+AGG | - | tig0021440:54311-54330 | Msa1391590:CDS | 25.0% |
| ! | AATAGACAACAACAAATCAT+CGG | - | tig0021440:54368-54387 | Msa1391590:intron | 25.0% |
| ! | AAATTTACATTTGATCTGCT+GGG | - | tig0021440:54524-54543 | Msa1391590:intron | 25.0% |
| ! | AAACAACTAAGTTAAAAGAC+CGG | + | tig0021440:55018-55037 | None:intergenic | 25.0% |
| !!! | AGTTTTGGTCTAACTTTAAA+TGG | + | tig0021440:55125-55144 | None:intergenic | 25.0% |
| ! | AATAACGGCAAAATACATAA+AGG | + | tig0021440:55273-55292 | None:intergenic | 25.0% |
| ! | TTAAGATGTATCAACATTGT+AGG | - | tig0021440:55332-55351 | Msa1391590:intron | 25.0% |
| !! | ATAAATGCTTATGCTTTGAA+GGG | - | tig0021440:55559-55578 | Msa1391590:intron | 25.0% |
| !!! | TTAATTTGTTTATACGACCA+TGG | - | tig0021440:55587-55606 | Msa1391590:intron | 25.0% |
| ! | ATTATAATTCTTGTGGATGA+AGG | - | tig0021440:56038-56057 | Msa1391590:intron | 25.0% |
| ! | CATATTATATTTGCACATGT+TGG | + | tig0021440:56103-56122 | None:intergenic | 25.0% |
| ! | CAACATGTGCAAATATAATA+TGG | - | tig0021440:56101-56120 | Msa1391590:intron | 25.0% |
| !!! | TTTTGTTTACCAACAAACTT+TGG | + | tig0021440:56542-56561 | None:intergenic | 25.0% |
| ! | AAATTATAAATGCAGGTACA+GGG | - | tig0021440:56682-56701 | Msa1391590:intron | 25.0% |
| ! | CAATATGAAATGTGCTAAAT+AGG | - | tig0021440:57201-57220 | Msa1391590:CDS | 25.0% |
| ! | ATCATATAAAATAATGCTGC+AGG | - | tig0021440:57291-57310 | Msa1391590:intron | 25.0% |
| ! | TCATATAAAATAATGCTGCA+GGG | - | tig0021440:57292-57311 | Msa1391590:intron | 25.0% |
| !! | CAATACCAAAACATGTTTTT+AGG | - | tig0021440:57467-57486 | Msa1391590:intron | 25.0% |
| ! | AAAATGAAAATGTTCATGCA+TGG | - | tig0021440:57525-57544 | Msa1391590:CDS | 25.0% |
| ! | TGAGTCACTATAAAATGTTT+AGG | + | tig0021440:57756-57775 | None:intergenic | 25.0% |
| !! | ATAAAGTTCTAAATGCTTGC+AGG | - | tig0021440:53998-54017 | Msa1391590:three_prime_UTR | 30.0% |
| AAGAGAAGTAAGTAAGGATA+AGG | - | tig0021440:54046-54065 | Msa1391590:three_prime_UTR | 30.0% | |
| GTACCATTTATAAACAAGGT+AGG | + | tig0021440:54115-54134 | None:intergenic | 30.0% | |
| GAACGTACCATTTATAAACA+AGG | + | tig0021440:54119-54138 | None:intergenic | 30.0% | |
| TTTGAAAGTTGACCAAAAGA+AGG | + | tig0021440:54203-54222 | None:intergenic | 30.0% | |
| !!! | AGATTTTACAAGAAGTGTTC+CGG | + | tig0021440:54291-54310 | None:intergenic | 30.0% |
| !! | AGTACTTGCTGTAATGTATT+TGG | + | tig0021440:54417-54436 | None:intergenic | 30.0% |
| TAAGTCTCTTCAAGAATGTT+CGG | - | tig0021440:54436-54455 | Msa1391590:intron | 30.0% | |
| GAAATTTACATTTGATCTGC+TGG | - | tig0021440:54523-54542 | Msa1391590:intron | 30.0% | |
| TTGCTAAACAACATCAACAA+TGG | - | tig0021440:54786-54805 | Msa1391590:intron | 30.0% | |
| AACAACTAAGTTAAAAGACC+GGG | + | tig0021440:55017-55036 | None:intergenic | 30.0% | |
| CAATTCCACAACCAATTTAT+GGG | - | tig0021440:55096-55115 | Msa1391590:CDS | 30.0% | |
| AATTCCACAACCAATTTATG+GGG | - | tig0021440:55097-55116 | Msa1391590:CDS | 30.0% | |
| !!! | CAATTTTATGGTGTCGATTT+TGG | + | tig0021440:55167-55186 | None:intergenic | 30.0% |
| !!! | TGCGCTTTTTTCAAGATTTT+AGG | + | tig0021440:55192-55211 | None:intergenic | 30.0% |
| !! | ATTCATGCCAACTGTTTTAA+AGG | - | tig0021440:55219-55238 | Msa1391590:CDS | 30.0% |
| !! | TTCATGCCAACTGTTTTAAA+GGG | - | tig0021440:55220-55239 | Msa1391590:CDS | 30.0% |
| CCTTTATTGTATAAGTGGTA+GGG | + | tig0021440:55371-55390 | None:intergenic | 30.0% | |
| CCTACCACTTATACAATAAA+GGG | - | tig0021440:55369-55388 | Msa1391590:intron | 30.0% | |
| GTTTCCCTTTATTGTATAAG+TGG | + | tig0021440:55376-55395 | None:intergenic | 30.0% | |
| ! | GTATCTTAAGGAAACTTGTT+AGG | - | tig0021440:55525-55544 | Msa1391590:intron | 30.0% |
| AAAGCATAAGCATTTATCGT+AGG | + | tig0021440:55556-55575 | None:intergenic | 30.0% | |
| GATAAATGCTTATGCTTTGA+AGG | - | tig0021440:55558-55577 | Msa1391590:intron | 30.0% | |
| ! | ATTTAGGATACGATACAACT+AGG | + | tig0021440:56288-56307 | None:intergenic | 30.0% |
| AAAGACAGTTAAATTTGTGC+AGG | - | tig0021440:56433-56452 | Msa1391590:intron | 30.0% | |
| !! | TTTTGAGGATGGAAAAGTTT+TGG | + | tig0021440:56646-56665 | None:intergenic | 30.0% |
| CAAATTATAAATGCAGGTAC+AGG | - | tig0021440:56681-56700 | Msa1391590:intron | 30.0% | |
| AATTATAAATGCAGGTACAG+GGG | - | tig0021440:56683-56702 | Msa1391590:intron | 30.0% | |
| TACACTAGACAATCTTTCTT+TGG | - | tig0021440:56876-56895 | Msa1391590:intron | 30.0% | |
| AGACAATCTTTCTTTGGATT+TGG | - | tig0021440:56882-56901 | Msa1391590:intron | 30.0% | |
| GACAATCTTTCTTTGGATTT+GGG | - | tig0021440:56883-56902 | Msa1391590:intron | 30.0% | |
| TTTATAACATTGACGGTCAT+TGG | - | tig0021440:56964-56983 | Msa1391590:intron | 30.0% | |
| TTATAACATTGACGGTCATT+GGG | - | tig0021440:56965-56984 | Msa1391590:intron | 30.0% | |
| !!! | ATGCAAAAGAAGTGTTTTCT+GGG | - | tig0021440:57363-57382 | Msa1391590:intron | 30.0% |
| ! | GATCACCTAAAAACATGTTT+TGG | + | tig0021440:57475-57494 | None:intergenic | 30.0% |
| !! | CACTCTAAAACAATACATCA+GGG | + | tig0021440:57581-57600 | None:intergenic | 30.0% |
| !! | ACACTCTAAAACAATACATC+AGG | + | tig0021440:57582-57601 | None:intergenic | 30.0% |
| TTAGAGAAAGAGAGTCAAAA+GGG | - | tig0021440:57718-57737 | Msa1391590:intron | 30.0% | |
| AATAATTATAGGGTGGCAAT+AGG | + | tig0021440:57834-57853 | None:intergenic | 30.0% | |
| CCAGATAAATAATTATAGGG+TGG | + | tig0021440:57841-57860 | None:intergenic | 30.0% | |
| CCACCCTATAATTATTTATC+TGG | - | tig0021440:57838-57857 | Msa1391590:intron | 30.0% | |
| TTTGTGTTCTTAAGTTTGCG+AGG | - | tig0021440:54022-54041 | Msa1391590:three_prime_UTR | 35.0% | |
| ! | AATGATCAGTGCGTATTGAT+GGG | + | tig0021440:54076-54095 | None:intergenic | 35.0% |
| CCATTTATAAACAAGGTAGG+TGG | + | tig0021440:54112-54131 | None:intergenic | 35.0% | |
| ! | CCACCTACCTTGTTTATAAA+TGG | - | tig0021440:54109-54128 | Msa1391590:exon | 35.0% |
| AAGTTGACCAAAAGAAGGTA+TGG | + | tig0021440:54198-54217 | None:intergenic | 35.0% | |
| AACAAATCATCGGATTCTGA+TGG | - | tig0021440:54378-54397 | Msa1391590:intron | 35.0% | |
| ACAAATCATCGGATTCTGAT+GGG | - | tig0021440:54379-54398 | Msa1391590:intron | 35.0% | |
| GACTTATATCAGTAGTAGCA+TGG | - | tig0021440:54826-54845 | Msa1391590:intron | 35.0% | |
| ! | AAACCCACCATGTTTCTAAA+GGG | - | tig0021440:54910-54929 | Msa1391590:intron | 35.0% |
| ! | TAAGGTTCCCTTTAGAAACA+TGG | + | tig0021440:54920-54939 | None:intergenic | 35.0% |
| AAAAAATTTGTGGTCCCACT+TGG | + | tig0021440:54989-55008 | None:intergenic | 35.0% | |
| !!! | CCACAAATTTTTTTGTCACC+CGG | - | tig0021440:54996-55015 | Msa1391590:CDS | 35.0% |
| TCCAATAACCGATTAATTCG+AGG | - | tig0021440:55069-55088 | Msa1391590:CDS | 35.0% | |
| CCAATAACCGATTAATTCGA+GGG | - | tig0021440:55070-55089 | Msa1391590:CDS | 35.0% | |
| ! | ATTGGTTCCCTCGAATTAAT+CGG | + | tig0021440:55080-55099 | None:intergenic | 35.0% |
| CCATAAATTGGTTGTGGAAT+TGG | + | tig0021440:55098-55117 | None:intergenic | 35.0% | |
| CCAATTCCACAACCAATTTA+TGG | - | tig0021440:55095-55114 | Msa1391590:CDS | 35.0% | |
| TTAAATGGAGCCCCATAAAT+TGG | + | tig0021440:55110-55129 | None:intergenic | 35.0% | |
| AGTTAGACCAAAACTCTGTA+TGG | - | tig0021440:55130-55149 | Msa1391590:CDS | 35.0% | |
| !!! | TTTATGGTGTCGATTTTGGT+TGG | + | tig0021440:55163-55182 | None:intergenic | 35.0% |
| ! | AATCTTGAAAAAAGCGCACT+CGG | - | tig0021440:55194-55213 | Msa1391590:CDS | 35.0% |
| !! | ATGAGACCCTTTAAAACAGT+TGG | + | tig0021440:55229-55248 | None:intergenic | 35.0% |
| CCCTACCACTTATACAATAA+AGG | - | tig0021440:55368-55387 | Msa1391590:intron | 35.0% | |
| CCCTTTATTGTATAAGTGGT+AGG | + | tig0021440:55372-55391 | None:intergenic | 35.0% | |
| TCAGGGTAATAGTCACATAT+GGG | - | tig0021440:55612-55631 | Msa1391590:intron | 35.0% | |
| TGGAATATCGGTATCTGATA+CGG | + | tig0021440:55777-55796 | None:intergenic | 35.0% | |
| GAAATATCTTTGCGTATCTG+TGG | + | tig0021440:55879-55898 | None:intergenic | 35.0% | |
| GTATCCTAGAAAAAGACGAA+GGG | - | tig0021440:55918-55937 | Msa1391590:intron | 35.0% | |
| ! | TTTACCCTTCGTCTTTTTCT+AGG | + | tig0021440:55925-55944 | None:intergenic | 35.0% |
| ! | TATGTTTTCCATCTGATCAG+TGG | + | tig0021440:56492-56511 | None:intergenic | 35.0% |
| ! | TTACCAACAAACTTTGGAAG+TGG | + | tig0021440:56536-56555 | None:intergenic | 35.0% |
| CATATGTCTCTCCATGATTA+TGG | + | tig0021440:56746-56765 | None:intergenic | 35.0% | |
| TTCAGATTTCTTCCAATTCC+TGG | - | tig0021440:56789-56808 | Msa1391590:intron | 35.0% | |
| !! | TTCCAATTCCTGGTATTGAT+TGG | - | tig0021440:56799-56818 | Msa1391590:intron | 35.0% |
| !! | TCCAATTCCTGGTATTGATT+GGG | - | tig0021440:56800-56819 | Msa1391590:intron | 35.0% |
| ATCTTTCTTTGGATTTGGGT+CGG | - | tig0021440:56887-56906 | Msa1391590:intron | 35.0% | |
| GAAATCGAAGACGGATAAAA+GGG | - | tig0021440:56910-56929 | Msa1391590:intron | 35.0% | |
| !! | GCATATATATCAAGCACTGA+CGG | - | tig0021440:57048-57067 | Msa1391590:CDS | 35.0% |
| TGTCATATCAAGTGTCCATA+CGG | + | tig0021440:57074-57093 | None:intergenic | 35.0% | |
| TTTCATATTGAAGACGCATC+TGG | + | tig0021440:57191-57210 | None:intergenic | 35.0% | |
| !!! | GATGCAAAAGAAGTGTTTTC+TGG | - | tig0021440:57362-57381 | Msa1391590:intron | 35.0% |
| GATCCTTAACAAAAGGAGTA+TGG | + | tig0021440:57391-57410 | None:intergenic | 35.0% | |
| ! | TCCTTTTGTTAAGGATCTAG+AGG | - | tig0021440:57394-57413 | Msa1391590:intron | 35.0% |
| ACCTCTAGATCCTTAACAAA+AGG | + | tig0021440:57398-57417 | None:intergenic | 35.0% | |
| ! | AACAGAATCTGCTCTTGTTT+GGG | - | tig0021440:57608-57627 | Msa1391590:CDS | 35.0% |
| !! | CTTTTGACTCTCTTTCTCTA+AGG | + | tig0021440:57719-57738 | None:intergenic | 35.0% |
| CTTAGAGAAAGAGAGTCAAA+AGG | - | tig0021440:57717-57736 | Msa1391590:intron | 35.0% | |
| TAGAGAAAGAGAGTCAAAAG+GGG | - | tig0021440:57719-57738 | Msa1391590:intron | 35.0% | |
| AGAGTCAAAAGGGGAAATTT+GGG | - | tig0021440:57728-57747 | Msa1391590:intron | 35.0% | |
| ACTGTTCACCAATTCAAAAG+TGG | - | tig0021440:57796-57815 | Msa1391590:intron | 35.0% | |
| CTGTTCACCAATTCAAAAGT+GGG | - | tig0021440:57797-57816 | Msa1391590:intron | 35.0% | |
| CGAGGAAAGAGAAGTAAGTA+AGG | - | tig0021440:54040-54059 | Msa1391590:three_prime_UTR | 40.0% | |
| GAATGATCAGTGCGTATTGA+TGG | + | tig0021440:54077-54096 | None:intergenic | 40.0% | |
| ! | TCATCAGCCATACCTTCTTT+TGG | - | tig0021440:54188-54207 | Msa1391590:CDS | 40.0% |
| TTGTTGTCTATTGTTGCGAG+TGG | + | tig0021440:54360-54379 | None:intergenic | 40.0% | |
| CTCTTCAAGAATGTTCGGTT+AGG | - | tig0021440:54441-54460 | Msa1391590:intron | 40.0% | |
| TTACATTTGATCTGCTGGGA+TGG | - | tig0021440:54528-54547 | Msa1391590:intron | 40.0% | |
| TACATTTGATCTGCTGGGAT+GGG | - | tig0021440:54529-54548 | Msa1391590:intron | 40.0% | |
| TGCTGAGAAGTGAAGAATTG+CGG | + | tig0021440:54569-54588 | None:intergenic | 40.0% | |
| ACTTCTCAGCATATAGTGTG+CGG | - | tig0021440:54578-54597 | Msa1391590:CDS | 40.0% | |
| TACCATTGAAGCTGTGACTT+AGG | + | tig0021440:54729-54748 | None:intergenic | 40.0% | |
| AAGTCACAGCTTCAATGGTA+TGG | - | tig0021440:54729-54748 | Msa1391590:intron | 40.0% | |
| ACTACACGACCACAGAAATT+TGG | - | tig0021440:54858-54877 | Msa1391590:intron | 40.0% | |
| GGAGCAAATCCAAATTTCTG+TGG | + | tig0021440:54870-54889 | None:intergenic | 40.0% | |
| TCACCAAGAATGGGATTGTA+GGG | + | tig0021440:54891-54910 | None:intergenic | 40.0% | |
| TTCACCAAGAATGGGATTGT+AGG | + | tig0021440:54892-54911 | None:intergenic | 40.0% | |
| ! | GAAACCCACCATGTTTCTAA+AGG | - | tig0021440:54909-54928 | Msa1391590:intron | 40.0% |
| ! | GTTCCCTTTAGAAACATGGT+GGG | + | tig0021440:54916-54935 | None:intergenic | 40.0% |
| CCGGGTGACAAAAAAATTTG+TGG | + | tig0021440:54999-55018 | None:intergenic | 40.0% | |
| CCCTCGAATTAATCGGTTAT+TGG | + | tig0021440:55073-55092 | None:intergenic | 40.0% | |
| GTCAGGGTAATAGTCACATA+TGG | - | tig0021440:55611-55630 | Msa1391590:intron | 40.0% | |
| GGAATATCGGTATCTGATAC+GGG | + | tig0021440:55776-55795 | None:intergenic | 40.0% | |
| ACCGATATTCCACAGATAGT+CGG | - | tig0021440:55785-55804 | Msa1391590:intron | 40.0% | |
| TCCGACTATCTGTGGAATAT+CGG | + | tig0021440:55789-55808 | None:intergenic | 40.0% | |
| CGTATCCTAGAAAAAGACGA+AGG | - | tig0021440:55917-55936 | Msa1391590:intron | 40.0% | |
| TCATGTCCACTCAATAGTGT+TGG | - | tig0021440:56380-56399 | Msa1391590:intron | 40.0% | |
| TTTGTGCCAACACTATTGAG+TGG | + | tig0021440:56389-56408 | None:intergenic | 40.0% | |
| TCTCCACTTCCAAAGTTTGT+TGG | - | tig0021440:56530-56549 | Msa1391590:intron | 40.0% | |
| ATGTCTCTCCATGATTATGG+AGG | + | tig0021440:56743-56762 | None:intergenic | 40.0% | |
| ACCCAATCAATACCAGGAAT+TGG | + | tig0021440:56804-56823 | None:intergenic | 40.0% | |
| !! | ATTCCTGGTATTGATTGGGT+TGG | - | tig0021440:56804-56823 | Msa1391590:intron | 40.0% |
| TCTTTCTTTGGATTTGGGTC+GGG | - | tig0021440:56888-56907 | Msa1391590:intron | 40.0% | |
| GGAAATCGAAGACGGATAAA+AGG | - | tig0021440:56909-56928 | Msa1391590:intron | 40.0% | |
| TGATAGGACAGTGACACATA+TGG | + | tig0021440:57158-57177 | None:intergenic | 40.0% | |
| TGTCACTGTCCTATCAATGT+CGG | - | tig0021440:57162-57181 | Msa1391590:CDS | 40.0% | |
| ATCTGGTATCCGACATTGAT+AGG | + | tig0021440:57174-57193 | None:intergenic | 40.0% | |
| ! | GCTCCATACTCCTTTTGTTA+AGG | - | tig0021440:57385-57404 | Msa1391590:intron | 40.0% |
| CAAACAAGAGCAGATTCTGT+TGG | + | tig0021440:57609-57628 | None:intergenic | 40.0% | |
| CAACAGAATCTGCTCTTGTT+TGG | - | tig0021440:57607-57626 | Msa1391590:CDS | 40.0% | |
| ! | ACAGAATCTGCTCTTGTTTG+GGG | - | tig0021440:57609-57628 | Msa1391590:CDS | 40.0% |
| AATCGTTGCTTATGATGGCT+TGG | + | tig0021440:57644-57663 | None:intergenic | 40.0% | |
| AAGCCATCATAAGCAACGAT+TGG | - | tig0021440:57643-57662 | Msa1391590:intron | 40.0% | |
| AGCCATCATAAGCAACGATT+GGG | - | tig0021440:57644-57663 | Msa1391590:intron | 40.0% | |
| GAGAGTCAAAAGGGGAAATT+TGG | - | tig0021440:57727-57746 | Msa1391590:intron | 40.0% | |
| GTGACTCATACCAATGAAGA+TGG | - | tig0021440:57768-57787 | Msa1391590:intron | 40.0% | |
| !! | TTTGGGACCCACTTTTGAAT+TGG | + | tig0021440:57807-57826 | None:intergenic | 40.0% |
| ATCTGATCTGTCACGCTTCA+AGG | - | tig0021440:54464-54483 | Msa1391590:intron | 45.0% | |
| GCTGAGAAGTGAAGAATTGC+GGG | + | tig0021440:54568-54587 | None:intergenic | 45.0% | |
| TTAGGCATGTTGAAGGTAGG+TGG | + | tig0021440:54711-54730 | None:intergenic | 45.0% | |
| GACTTAGGCATGTTGAAGGT+AGG | + | tig0021440:54714-54733 | None:intergenic | 45.0% | |
| CTGTGACTTAGGCATGTTGA+AGG | + | tig0021440:54718-54737 | None:intergenic | 45.0% | |
| TGCCTAAGTCACAGCTTCAA+TGG | - | tig0021440:54724-54743 | Msa1391590:intron | 45.0% | |
| GTTTAGCAAGTCTACTCCTG+TGG | + | tig0021440:54775-54794 | None:intergenic | 45.0% | |
| !! | TGGTGGGTTTCACCAAGAAT+GGG | + | tig0021440:54900-54919 | None:intergenic | 45.0% |
| !! | ATGGTGGGTTTCACCAAGAA+TGG | + | tig0021440:54901-54920 | None:intergenic | 45.0% |
| ! | GGTTCCCTTTAGAAACATGG+TGG | + | tig0021440:54917-54936 | None:intergenic | 45.0% |
| GGAACACGAACAATGGGAAA+AGG | + | tig0021440:54968-54987 | None:intergenic | 45.0% | |
| CCACTTGGAACACGAACAAT+GGG | + | tig0021440:54974-54993 | None:intergenic | 45.0% | |
| CCATTGTTCGTGTTCCAAGT+GGG | - | tig0021440:54972-54991 | Msa1391590:intron | 45.0% | |
| TTTATACGACCATGGCGTCA+GGG | - | tig0021440:55595-55614 | Msa1391590:intron | 45.0% | |
| TGAGGAAATCCACTCAACAG+TGG | - | tig0021440:55701-55720 | Msa1391590:intron | 45.0% | |
| ATACGGGTACGATACATACG+GGG | + | tig0021440:56334-56353 | None:intergenic | 45.0% | |
| GATACGGGTACGATACATAC+GGG | + | tig0021440:56335-56354 | None:intergenic | 45.0% | |
| GGATACGGGTACGATACATA+CGG | + | tig0021440:56336-56355 | None:intergenic | 45.0% | |
| GTATGTATCGTACCCGTATC+CGG | - | tig0021440:56335-56354 | Msa1391590:intron | 45.0% | |
| TATGTATCGTACCCGTATCC+GGG | - | tig0021440:56336-56355 | Msa1391590:intron | 45.0% | |
| TTGAGTGGACATGAGTACTC+TGG | + | tig0021440:56374-56393 | None:intergenic | 45.0% | |
| ATTCCATGCCACTGATCAGA+TGG | - | tig0021440:56481-56500 | Msa1391590:intron | 45.0% | |
| TTTCCATCTGATCAGTGGCA+TGG | + | tig0021440:56487-56506 | None:intergenic | 45.0% | |
| ! | CAAACTTTGGAAGTGGAGAG+TGG | + | tig0021440:56529-56548 | None:intergenic | 45.0% |
| CAACTGCACCTCCATAATCA+TGG | - | tig0021440:56732-56751 | Msa1391590:intron | 45.0% | |
| TTGCCAACCCAATCAATACC+AGG | + | tig0021440:56810-56829 | None:intergenic | 45.0% | |
| TGTAGCTCAATTCTGCTACC+AGG | + | tig0021440:56860-56879 | None:intergenic | 45.0% | |
| ACATTGACGGTCATTGGGAT+AGG | - | tig0021440:56970-56989 | Msa1391590:intron | 45.0% | |
| GCCATCATAAGCAACGATTG+GGG | - | tig0021440:57645-57664 | Msa1391590:intron | 45.0% | |
| TCCCCAATCGTTGCTTATGA+TGG | + | tig0021440:57649-57668 | None:intergenic | 45.0% | |
| AAGAGAGGCAAAGAACACTC+TGG | - | tig0021440:57674-57693 | Msa1391590:intron | 45.0% | |
| CTCATACCAATGAAGATGGC+TGG | - | tig0021440:57772-57791 | Msa1391590:intron | 45.0% | |
| ACAGTTCCAGCCATCTTCAT+TGG | + | tig0021440:57781-57800 | None:intergenic | 45.0% | |
| TGTCAAGCAACCAGACCAAT+TGG | - | tig0021440:57954-57973 | Msa1391590:five_prime_UTR | 45.0% | |
| !!! | AAAATAAATTCATTTTTAAT+TGG | + | tig0021440:54643-54662 | None:intergenic | 5.0% |
| TTGAAGGTAGGTGGTAGCTG+TGG | + | tig0021440:54702-54721 | None:intergenic | 50.0% | |
| TGTGTCTATTCCACAGCCAC+AGG | - | tig0021440:54756-54775 | Msa1391590:intron | 50.0% | |
| GCTCCCTACAATCCCATTCT+TGG | - | tig0021440:54885-54904 | Msa1391590:intron | 50.0% | |
| CCTGTTCGAGCAAGACGTTA+AGG | + | tig0021440:54938-54957 | None:intergenic | 50.0% | |
| CCTTAACGTCTTGCTCGAAC+AGG | - | tig0021440:54935-54954 | Msa1391590:intron | 50.0% | |
| CCCATTGTTCGTGTTCCAAG+TGG | - | tig0021440:54971-54990 | Msa1391590:intron | 50.0% | |
| CCCACTTGGAACACGAACAA+TGG | + | tig0021440:54975-54994 | None:intergenic | 50.0% | |
| GGAGCCCCATAAATTGGTTG+TGG | + | tig0021440:55104-55123 | None:intergenic | 50.0% | |
| ! | TGCGCGTCCATACAGAGTTT+TGG | + | tig0021440:55140-55159 | None:intergenic | 50.0% |
| GTTTATACGACCATGGCGTC+AGG | - | tig0021440:55594-55613 | Msa1391590:intron | 50.0% | |
| TGACTATTACCCTGACGCCA+TGG | + | tig0021440:55607-55626 | None:intergenic | 50.0% | |
| CTTGTGACACCACTGTTGAG+TGG | + | tig0021440:55713-55732 | None:intergenic | 50.0% | |
| CAAGCCACTGCTATGAAGTC+CGG | - | tig0021440:55729-55748 | Msa1391590:intron | 50.0% | |
| GTATCCGGACTTCATAGCAG+TGG | + | tig0021440:55736-55755 | None:intergenic | 50.0% | |
| GAAGTCCGGATACTCCAAGA+CGG | - | tig0021440:55743-55762 | Msa1391590:intron | 50.0% | |
| CATGGGTATCCGACTATCTG+TGG | + | tig0021440:55797-55816 | None:intergenic | 50.0% | |
| GTGGATGAAGGTAACGAGAG+AGG | - | tig0021440:56050-56069 | Msa1391590:intron | 50.0% | |
| GTACGATACATACGGGGATG+CGG | + | tig0021440:56328-56347 | None:intergenic | 50.0% | |
| TTGCTATGAAGCCCGGATAC+GGG | + | tig0021440:56350-56369 | None:intergenic | 50.0% | |
| ! | CTTGCTATGAAGCCCGGATA+CGG | + | tig0021440:56351-56370 | None:intergenic | 50.0% |
| GGAATGCAGATACCTGAGGA+TGG | + | tig0021440:56466-56485 | None:intergenic | 50.0% | |
| GCATGGAATGCAGATACCTG+AGG | + | tig0021440:56470-56489 | None:intergenic | 50.0% | |
| GGGGTAGAAGTTGACATGCA+TGG | - | tig0021440:56702-56721 | Msa1391590:intron | 50.0% | |
| ! | GGGTTGGCAATGTCACTATC+CGG | - | tig0021440:56820-56839 | Msa1391590:intron | 50.0% |
| ACTATCCGGTGCCTAGAAAC+AGG | - | tig0021440:56834-56853 | Msa1391590:intron | 50.0% | |
| TTGGGTCGGGAAATCGAAGA+CGG | - | tig0021440:56901-56920 | Msa1391590:intron | 50.0% | |
| CGATTGGGGAAAAGCAAGAG+AGG | - | tig0021440:57659-57678 | Msa1391590:intron | 50.0% | |
| AGAGGCAAAGAACACTCTGG+AGG | - | tig0021440:57677-57696 | Msa1391590:intron | 50.0% | |
| ! | ACACTCTGGAGGAAACTCAG+AGG | - | tig0021440:57688-57707 | Msa1391590:intron | 50.0% |
| !! | GGGTGGCAATAGGAGCATTT+GGG | + | tig0021440:57824-57843 | None:intergenic | 50.0% |
| !! | AGGGTGGCAATAGGAGCATT+TGG | + | tig0021440:57825-57844 | None:intergenic | 50.0% |
| CAAGTCTACTCCTGTGGCTG+TGG | + | tig0021440:54769-54788 | None:intergenic | 55.0% | |
| ! | CGTCTCCGTCTTGGAGTATC+CGG | + | tig0021440:55751-55770 | None:intergenic | 55.0% |
| ATACGGGTACGTCTCCGTCT+TGG | + | tig0021440:55760-55779 | None:intergenic | 55.0% | |
| !! | CTCTGGCTTGCTATGAAGCC+CGG | + | tig0021440:56357-56376 | None:intergenic | 55.0% |
| GCAGGTTTCACACCATCCTC+AGG | - | tig0021440:56451-56470 | Msa1391590:intron | 55.0% | |
| ! | CTGCTACCAGGCCTGTTTCT+AGG | + | tig0021440:56848-56867 | None:intergenic | 55.0% |
| !! | ATCAAGCACTGACGGCCGTA+TGG | - | tig0021440:57056-57075 | Msa1391590:CDS | 55.0% |
| !! | CCAGGCCTGTTTCTAGGCAC+CGG | + | tig0021440:56842-56861 | None:intergenic | 60.0% |
| CCGGTGCCTAGAAACAGGCC+TGG | - | tig0021440:56839-56858 | Msa1391590:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021440 | gene | 53993 | 57978 | 53993 | ID=Msa1391590;Name=Msa1391590 |
| tig0021440 | mRNA | 53993 | 57978 | 53993 | ID=Msa1391590-mRNA-1;Parent=Msa1391590;Name=Msa1391590-mRNA-1;_AED=0.37;_eAED=0.37;_QI=135|1|1|1|0.83|0.85|7|130|384 |
| tig0021440 | exon | 53993 | 54374 | 53993 | ID=Msa1391590-mRNA-1:exon:12810;Parent=Msa1391590-mRNA-1 |
| tig0021440 | exon | 54556 | 54658 | 54556 | ID=Msa1391590-mRNA-1:exon:12809;Parent=Msa1391590-mRNA-1 |
| tig0021440 | exon | 54980 | 55274 | 54980 | ID=Msa1391590-mRNA-1:exon:12808;Parent=Msa1391590-mRNA-1 |
| tig0021440 | exon | 55420 | 55516 | 55420 | ID=Msa1391590-mRNA-1:exon:12807;Parent=Msa1391590-mRNA-1 |
| tig0021440 | exon | 57015 | 57266 | 57015 | ID=Msa1391590-mRNA-1:exon:12806;Parent=Msa1391590-mRNA-1 |
| tig0021440 | exon | 57486 | 57638 | 57486 | ID=Msa1391590-mRNA-1:exon:12805;Parent=Msa1391590-mRNA-1 |
| tig0021440 | exon | 57841 | 57978 | 57841 | ID=Msa1391590-mRNA-1:exon:12804;Parent=Msa1391590-mRNA-1 |
| tig0021440 | five_prime_UTR | 57844 | 57978 | 57844 | ID=Msa1391590-mRNA-1:five_prime_utr;Parent=Msa1391590-mRNA-1 |
| tig0021440 | CDS | 57841 | 57843 | 57841 | ID=Msa1391590-mRNA-1:cds;Parent=Msa1391590-mRNA-1 |
| tig0021440 | CDS | 57486 | 57638 | 57486 | ID=Msa1391590-mRNA-1:cds;Parent=Msa1391590-mRNA-1 |
| tig0021440 | CDS | 57015 | 57266 | 57015 | ID=Msa1391590-mRNA-1:cds;Parent=Msa1391590-mRNA-1 |
| tig0021440 | CDS | 55420 | 55516 | 55420 | ID=Msa1391590-mRNA-1:cds;Parent=Msa1391590-mRNA-1 |
| tig0021440 | CDS | 54980 | 55274 | 54980 | ID=Msa1391590-mRNA-1:cds;Parent=Msa1391590-mRNA-1 |
| tig0021440 | CDS | 54556 | 54658 | 54556 | ID=Msa1391590-mRNA-1:cds;Parent=Msa1391590-mRNA-1 |
| tig0021440 | CDS | 54123 | 54374 | 54123 | ID=Msa1391590-mRNA-1:cds;Parent=Msa1391590-mRNA-1 |
| tig0021440 | three_prime_UTR | 53993 | 54122 | 53993 | ID=Msa1391590-mRNA-1:three_prime_utr;Parent=Msa1391590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
