Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802300 | XP_003612642.1 | 90.675 | 311 | 10 | 1 | 1 | 292 | 1 | 311 | 0.0 | 576 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802300 | sp|P52581|IFRH_LUPAL | 79.487 | 312 | 44 | 2 | 1 | 292 | 1 | 312 | 0.0 | 518 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802300 | B7FI60 | 90.675 | 311 | 10 | 1 | 1 | 292 | 1 | 311 | 0.0 | 576 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008330 | Msa0802300 | 0.810079 | 1.377796e-50 | -8.615850e-47 |
| Msa0008850 | Msa0802300 | 0.810636 | 1.044788e-50 | -8.615850e-47 |
| Msa0017120 | Msa0802300 | 0.807937 | 3.959059e-50 | -8.615850e-47 |
| Msa0020630 | Msa0802300 | 0.803295 | 3.731823e-49 | -8.615850e-47 |
| Msa0030030 | Msa0802300 | 0.804871 | 1.754514e-49 | -8.615850e-47 |
| Msa0039200 | Msa0802300 | 0.811782 | 5.893046e-51 | -8.615850e-47 |
| Msa0055280 | Msa0802300 | 0.806051 | 9.922007e-50 | -8.615850e-47 |
| Msa0060600 | Msa0802300 | 0.819209 | 1.309678e-52 | -8.615850e-47 |
| Msa0070090 | Msa0802300 | 0.800660 | 1.298761e-48 | -8.615850e-47 |
| Msa0086820 | Msa0802300 | 0.811149 | 8.089652e-51 | -8.615850e-47 |
| Msa0089210 | Msa0802300 | 0.800112 | 1.679180e-48 | -8.615850e-47 |
| Msa0094420 | Msa0802300 | 0.811392 | 7.164011e-51 | -8.615850e-47 |
| Msa0105340 | Msa0802300 | 0.804660 | 1.941679e-49 | -8.615850e-47 |
| Msa0114250 | Msa0802300 | 0.816546 | 5.229981e-52 | -8.615850e-47 |
| Msa0606060 | Msa0802300 | 0.807530 | 4.832087e-50 | -8.615850e-47 |
| Msa0619330 | Msa0802300 | 0.809285 | 2.040257e-50 | -8.615850e-47 |
| Msa0621890 | Msa0802300 | 0.818362 | 2.039236e-52 | -8.615850e-47 |
| Msa0622390 | Msa0802300 | 0.827044 | 1.944071e-54 | -8.615850e-47 |
| Msa0626230 | Msa0802300 | 0.823983 | 1.032140e-53 | -8.615850e-47 |
| Msa0650650 | Msa0802300 | 0.802801 | 4.721934e-49 | -8.615850e-47 |
| Msa0653710 | Msa0802300 | 0.807617 | 4.631925e-50 | -8.615850e-47 |
| Msa0654060 | Msa0802300 | 0.804218 | 2.401123e-49 | -8.615850e-47 |
| Msa0674220 | Msa0802300 | 0.806899 | 6.575143e-50 | -8.615850e-47 |
| Msa0707780 | Msa0802300 | 0.802571 | 5.265994e-49 | -8.615850e-47 |
| Msa0714020 | Msa0802300 | 0.813996 | 1.929122e-51 | -8.615850e-47 |
| Msa0719340 | Msa0802300 | 0.804774 | 1.838046e-49 | -8.615850e-47 |
| Msa0724050 | Msa0802300 | 0.803187 | 3.929522e-49 | -8.615850e-47 |
| Msa0733000 | Msa0802300 | 0.811554 | 6.607141e-51 | -8.615850e-47 |
| Msa0739610 | Msa0802300 | 0.802752 | 4.833161e-49 | -8.615850e-47 |
| Msa0740420 | Msa0802300 | 0.851722 | 7.375533e-61 | -8.615850e-47 |
| Msa0772150 | Msa0802300 | 0.802228 | 6.198237e-49 | -8.615850e-47 |
| Msa0782330 | Msa0802300 | 0.806764 | 7.021532e-50 | -8.615850e-47 |
| Msa0792510 | Msa0802300 | 0.801940 | 7.101622e-49 | -8.615850e-47 |
| Msa0802300 | Msa0811510 | 0.808569 | 2.903632e-50 | -8.615850e-47 |
| Msa0802300 | Msa0820670 | 0.845631 | 3.600698e-59 | -8.615850e-47 |
| Msa0802300 | Msa0851740 | 0.821339 | 4.254648e-53 | -8.615850e-47 |
| Msa0802300 | Msa0887070 | 0.812871 | 3.408486e-51 | -8.615850e-47 |
| Msa0802300 | Msa0903730 | 0.839390 | 1.630983e-57 | -8.615850e-47 |
| Msa0802300 | Msa0973130 | 0.805160 | 1.526726e-49 | -8.615850e-47 |
| Msa0802300 | Msa0973230 | 0.809907 | 1.500202e-50 | -8.615850e-47 |
| Msa0802300 | Msa0978000 | 0.806466 | 8.113232e-50 | -8.615850e-47 |
| Msa0802300 | Msa1024140 | 0.810736 | 9.936476e-51 | -8.615850e-47 |
| Msa0802300 | Msa1032350 | 0.840931 | 6.458242e-58 | -8.615850e-47 |
| Msa0802300 | Msa1036350 | 0.804458 | 2.139474e-49 | -8.615850e-47 |
| Msa0802300 | Msa1044040 | 0.803484 | 3.409526e-49 | -8.615850e-47 |
| Msa0802300 | Msa1063490 | 0.802027 | 6.816761e-49 | -8.615850e-47 |
| Msa0802300 | Msa1072350 | 0.813992 | 1.932479e-51 | -8.615850e-47 |
| Msa0802300 | Msa1076630 | 0.811435 | 7.012216e-51 | -8.615850e-47 |
| Msa0802300 | Msa1079610 | 0.815908 | 7.263725e-52 | -8.615850e-47 |
| Msa0802300 | Msa1108780 | 0.815056 | 1.124214e-51 | -8.615850e-47 |
| Msa0802300 | Msa1118140 | 0.817150 | 3.828563e-52 | -8.615850e-47 |
| Msa0802300 | Msa1152280 | 0.802533 | 5.363092e-49 | -8.615850e-47 |
| Msa0802300 | Msa1157160 | 0.811165 | 8.024820e-51 | -8.615850e-47 |
| Msa0802300 | Msa1191390 | 0.806070 | 9.833426e-50 | -8.615850e-47 |
| Msa0802300 | Msa1201990 | 0.828189 | 1.032383e-54 | -8.615850e-47 |
| Msa0802300 | Msa1208070 | 0.800871 | 1.175904e-48 | -8.615850e-47 |
| Msa0802300 | Msa1220230 | 0.810257 | 1.261223e-50 | -8.615850e-47 |
| Msa0802300 | Msa1231520 | 0.821153 | 4.697229e-53 | -8.615850e-47 |
| Msa0802300 | Msa1248400 | 0.801545 | 8.560310e-49 | -8.615850e-47 |
| Msa0802300 | Msa1254770 | 0.821277 | 4.398945e-53 | -8.615850e-47 |
| Msa0802300 | Msa1254800 | 0.820305 | 7.357750e-53 | -8.615850e-47 |
| Msa0802300 | Msa1287160 | 0.803822 | 2.901476e-49 | -8.615850e-47 |
| Msa0802300 | Msa1287340 | 0.812869 | 3.412011e-51 | -8.615850e-47 |
| Msa0802300 | Msa1295010 | 0.830091 | 3.569797e-55 | -8.615850e-47 |
| Msa0802300 | Msa1302150 | 0.806347 | 8.596688e-50 | -8.615850e-47 |
| Msa0802300 | Msa1325980 | 0.804462 | 2.135248e-49 | -8.615850e-47 |
| Msa0802300 | Msa1326000 | 0.820134 | 8.051827e-53 | -8.615850e-47 |
| Msa0802300 | Msa1327820 | 0.839631 | 1.411646e-57 | -8.615850e-47 |
| Msa0802300 | Msa1329990 | 0.830724 | 2.499718e-55 | -8.615850e-47 |
| Msa0802300 | Msa1355260 | 0.840278 | 9.576261e-58 | -8.615850e-47 |
| Msa0802300 | Msa1388230 | 0.808196 | 3.487981e-50 | -8.615850e-47 |
| Msa0802300 | Msa1392680 | 0.806762 | 7.025793e-50 | -8.615850e-47 |
| Msa0802300 | Msa1397540 | 0.836672 | 8.158035e-57 | -8.615850e-47 |
| Msa0802300 | Msa1428440 | 0.817925 | 2.560799e-52 | -8.615850e-47 |
| Msa0802300 | Msa1435670 | 0.811421 | 7.059788e-51 | -8.615850e-47 |
| Msa0802300 | Msa1456810 | 0.804280 | 2.330600e-49 | -8.615850e-47 |
| Msa0133670 | Msa0802300 | 0.811556 | 6.599717e-51 | -8.615850e-47 |
| Msa0133880 | Msa0802300 | 0.814086 | 1.842702e-51 | -8.615850e-47 |
| Msa0141670 | Msa0802300 | 0.806219 | 9.146319e-50 | -8.615850e-47 |
| Msa0147550 | Msa0802300 | 0.809039 | 2.303597e-50 | -8.615850e-47 |
| Msa0149500 | Msa0802300 | 0.810746 | 9.886479e-51 | -8.615850e-47 |
| Msa0159750 | Msa0802300 | 0.803955 | 2.723328e-49 | -8.615850e-47 |
| Msa0184120 | Msa0802300 | 0.810917 | 9.080952e-51 | -8.615850e-47 |
| Msa0203180 | Msa0802300 | 0.801632 | 8.216206e-49 | -8.615850e-47 |
| Msa0207180 | Msa0802300 | 0.801681 | 8.029979e-49 | -8.615850e-47 |
| Msa0212370 | Msa0802300 | 0.821087 | 4.865428e-53 | -8.615850e-47 |
| Msa0213090 | Msa0802300 | 0.804874 | 1.751779e-49 | -8.615850e-47 |
| Msa0227490 | Msa0802300 | 0.801088 | 1.062101e-48 | -8.615850e-47 |
| Msa0227500 | Msa0802300 | 0.811520 | 6.718585e-51 | -8.615850e-47 |
| Msa0371610 | Msa0802300 | 0.814986 | 1.165234e-51 | -8.615850e-47 |
| Msa0413740 | Msa0802300 | 0.822382 | 2.441350e-53 | -8.615850e-47 |
| Msa0418000 | Msa0802300 | 0.815661 | 8.246432e-52 | -8.615850e-47 |
| Msa0420070 | Msa0802300 | 0.800882 | 1.170202e-48 | -8.615850e-47 |
| Msa0427050 | Msa0802300 | 0.808623 | 2.828152e-50 | -8.615850e-47 |
| Msa0466100 | Msa0802300 | 0.810900 | 9.159197e-51 | -8.615850e-47 |
| Msa0252180 | Msa0802300 | 0.802708 | 4.934165e-49 | -8.615850e-47 |
| Msa0253370 | Msa0802300 | 0.817753 | 2.800000e-52 | -8.615850e-47 |
| Msa0256170 | Msa0802300 | 0.811592 | 6.480501e-51 | -8.615850e-47 |
| Msa0284870 | Msa0802300 | 0.801376 | 9.272107e-49 | -8.615850e-47 |
| Msa0286790 | Msa0802300 | 0.811525 | 6.702288e-51 | -8.615850e-47 |
| Msa0291040 | Msa0802300 | 0.839812 | 1.266432e-57 | -8.615850e-47 |
| Msa0295520 | Msa0802300 | 0.811224 | 7.790781e-51 | -8.615850e-47 |
| Msa0315480 | Msa0802300 | 0.810082 | 1.375846e-50 | -8.615850e-47 |
| Msa0320540 | Msa0802300 | 0.810973 | 8.829959e-51 | -8.615850e-47 |
| Msa0323630 | Msa0802300 | 0.844039 | 9.674133e-59 | -8.615850e-47 |
| Msa0323640 | Msa0802300 | 0.812191 | 4.800395e-51 | -8.615850e-47 |
| Msa0325470 | Msa0802300 | 0.814202 | 1.737209e-51 | -8.615850e-47 |
| Msa0329710 | Msa0802300 | 0.809468 | 1.864320e-50 | -8.615850e-47 |
| Msa0330270 | Msa0802300 | 0.819769 | 9.759992e-53 | -8.615850e-47 |
| Msa0330400 | Msa0802300 | 0.826559 | 2.538456e-54 | -8.615850e-47 |
| Msa0331780 | Msa0802300 | 0.826443 | 2.706008e-54 | -8.615850e-47 |
| Msa0336270 | Msa0802300 | 0.832460 | 9.333460e-56 | -8.615850e-47 |
| Msa0344070 | Msa0802300 | 0.802789 | 4.748067e-49 | -8.615850e-47 |
| Msa0505390 | Msa0802300 | 0.818563 | 1.836304e-52 | -8.615850e-47 |
| Msa0525240 | Msa0802300 | 0.811418 | 7.071185e-51 | -8.615850e-47 |
| Msa0574170 | Msa0802300 | 0.806627 | 7.503238e-50 | -8.615850e-47 |
| Msa0598250 | Msa0802300 | 0.842900 | 1.949325e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802300 | MtrunA17_Chr5g0409651 | 90.675 | 311 | 10 | 1 | 1 | 292 | 1 | 311 | 0.0 | 576 |
| Msa0802300 | MtrunA17_Chr5g0409641 | 89.389 | 311 | 14 | 1 | 1 | 292 | 1 | 311 | 0.0 | 573 |
| Msa0802300 | MtrunA17_Chr8g0369391 | 72.026 | 311 | 67 | 2 | 1 | 291 | 1 | 311 | 2.03e-165 | 461 |
| Msa0802300 | MtrunA17_Chr5g0404471 | 48.387 | 310 | 133 | 4 | 3 | 291 | 5 | 308 | 4.98e-94 | 280 |
| Msa0802300 | MtrunA17_Chr3g0141681 | 47.573 | 309 | 133 | 5 | 3 | 288 | 4 | 306 | 1.63e-91 | 274 |
| Msa0802300 | MtrunA17_Chr3g0141691 | 46.580 | 307 | 137 | 4 | 3 | 288 | 4 | 304 | 1.61e-90 | 271 |
| Msa0802300 | MtrunA17_Chr3g0144701 | 47.896 | 309 | 134 | 5 | 4 | 291 | 9 | 311 | 4.31e-90 | 270 |
| Msa0802300 | MtrunA17_Chr4g0035131 | 43.648 | 307 | 146 | 5 | 4 | 289 | 45 | 345 | 8.85e-80 | 246 |
| Msa0802300 | MtrunA17_Chr5g0404481 | 40.625 | 320 | 153 | 5 | 3 | 291 | 4 | 317 | 7.72e-77 | 236 |
| Msa0802300 | MtrunA17_Chr5g0404511 | 40.625 | 320 | 153 | 5 | 3 | 291 | 4 | 317 | 8.89e-77 | 236 |
| Msa0802300 | MtrunA17_Chr4g0035111 | 39.482 | 309 | 160 | 5 | 2 | 289 | 5 | 307 | 4.59e-73 | 227 |
| Msa0802300 | MtrunA17_Chr4g0035121 | 40.645 | 310 | 157 | 4 | 1 | 288 | 1 | 305 | 1.18e-72 | 226 |
| Msa0802300 | MtrunA17_Chr3g0078901 | 40.836 | 311 | 147 | 8 | 2 | 288 | 4 | 301 | 9.56e-71 | 221 |
| Msa0802300 | MtrunA17_Chr3g0078831 | 40.323 | 310 | 150 | 8 | 2 | 288 | 4 | 301 | 8.04e-66 | 208 |
| Msa0802300 | MtrunA17_Chr1g0198771 | 31.746 | 315 | 183 | 7 | 1 | 291 | 11 | 317 | 2.54e-51 | 172 |
| Msa0802300 | MtrunA17_Chr3g0078941 | 36.453 | 203 | 100 | 6 | 108 | 288 | 12 | 207 | 2.15e-34 | 124 |
| Msa0802300 | MtrunA17_Chr3g0078951 | 42.202 | 109 | 54 | 3 | 3 | 110 | 5 | 105 | 3.70e-18 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802300 | AT1G32100.1 | 66.234 | 308 | 85 | 1 | 3 | 291 | 9 | 316 | 5.46e-155 | 435 |
| Msa0802300 | AT4G13660.1 | 65.584 | 308 | 87 | 1 | 3 | 291 | 9 | 316 | 1.59e-150 | 424 |
| Msa0802300 | AT4G13660.2 | 65.584 | 308 | 87 | 1 | 3 | 291 | 9 | 316 | 1.59e-150 | 424 |
| Msa0802300 | AT1G75290.1 | 45.687 | 313 | 141 | 5 | 3 | 292 | 5 | 311 | 7.09e-88 | 265 |
| Msa0802300 | AT1G75290.2 | 45.687 | 313 | 141 | 5 | 3 | 292 | 32 | 338 | 2.09e-87 | 265 |
| Msa0802300 | AT1G75280.1 | 45.192 | 312 | 143 | 5 | 3 | 292 | 5 | 310 | 3.78e-86 | 260 |
| Msa0802300 | AT1G75300.1 | 44.892 | 323 | 138 | 6 | 3 | 291 | 5 | 321 | 4.55e-84 | 256 |
| Msa0802300 | AT4G39230.1 | 44.051 | 311 | 145 | 5 | 3 | 291 | 4 | 307 | 2.58e-82 | 251 |
| Msa0802300 | AT1G19540.1 | 43.408 | 311 | 149 | 5 | 4 | 291 | 3 | 309 | 5.65e-77 | 237 |
| Msa0802300 | AT1G19540.2 | 45.736 | 258 | 134 | 3 | 4 | 259 | 3 | 256 | 3.50e-71 | 221 |
| Msa0802300 | AT4G34540.1 | 38.141 | 312 | 151 | 6 | 3 | 288 | 7 | 302 | 1.41e-61 | 197 |
Find 71 sgRNAs with CRISPR-Local
Find 337 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTTCCTACCTTCAGAATT+TGG | 0.100954 | 5_3:-16519700 | Msa0802300:CDS |
| TGGGATGGACCCAGCTCTTA+TGG | 0.218113 | 5_3:-16519680 | Msa0802300:CDS |
| GACGTTCCCTGCATCCTTGA+TGG | 0.252714 | 5_3:+16523694 | None:intergenic |
| ATCCTCAATTGCTTTCCTTA+TGG | 0.276747 | 5_3:+16519612 | None:intergenic |
| GTTTGTGGCAGTTGTTTATA+TGG | 0.279757 | 5_3:-16519342 | Msa0802300:intron |
| TCATCAAATGTGACTCTTCC+TGG | 0.296978 | 5_3:+16519643 | None:intergenic |
| AGTCACATTTGATGATAAAA+TGG | 0.301575 | 5_3:-16519635 | Msa0802300:CDS |
| GTACTTCAACGTCCTGATAT+AGG | 0.328850 | 5_3:-16523905 | Msa0802300:CDS |
| TACTTCAACGTCCTGATATA+GGG | 0.340854 | 5_3:-16523904 | Msa0802300:CDS |
| AAGAAAGTCTTGTTCGGATA+TGG | 0.342755 | 5_3:+16519163 | None:intergenic |
| AAAGAGAGCTAGTTGAGAAA+TGG | 0.344521 | 5_3:-16519220 | Msa0802300:CDS |
| GTTTCCTACCTTCAGAATTT+GGG | 0.347946 | 5_3:-16519699 | Msa0802300:CDS |
| AAGAGAGCTAGTTGAGAAAT+GGG | 0.369973 | 5_3:-16519219 | Msa0802300:CDS |
| CGAGACAAGGTTGTTCTCTA+TGG | 0.382332 | 5_3:-16519499 | Msa0802300:CDS |
| TGAACAAGACAATATATATA+AGG | 0.385377 | 5_3:-16519265 | Msa0802300:CDS |
| TGTTTCGCGGGCTACTTTGC+CGG | 0.387206 | 5_3:-16519556 | Msa0802300:CDS |
| GAGAAATGGGAGAAACTTAC+TGG | 0.391209 | 5_3:-16519206 | Msa0802300:CDS |
| GGGATGGACCCAGCTCTTAT+GGG | 0.395550 | 5_3:-16519679 | Msa0802300:CDS |
| GTTGTTATTTGCACCATGTC+TGG | 0.405325 | 5_3:-16523767 | Msa0802300:CDS |
| TGCCGGTAACCTCTCTCAAA+TGG | 0.408456 | 5_3:-16519539 | Msa0802300:CDS |
| AACAATAATGGGAAAGAGTA+AGG | 0.425286 | 5_3:-16524005 | Msa0802300:exon |
| TCAGTATCAAGCCCTATATC+AGG | 0.425455 | 5_3:+16523893 | None:intergenic |
| CTTCTTTCATTCAAGAAACT+AGG | 0.431002 | 5_3:-16523857 | Msa0802300:CDS |
| ATTGTCTTGTTCAACGTTCG+AGG | 0.459458 | 5_3:+16519275 | None:intergenic |
| TCCCATTTGAGAGAGGTTAC+CGG | 0.471634 | 5_3:+16519537 | None:intergenic |
| ATGCGTGTGTATTGCACCTC+TGG | 0.472227 | 5_3:+16518375 | None:intergenic |
| CATCTCCGCCAACTGTTTCG+CGG | 0.474425 | 5_3:-16519569 | Msa0802300:CDS |
| GCCGGTAACCTCTCTCAAAT+GGG | 0.483634 | 5_3:-16519538 | Msa0802300:CDS |
| AAGAGTAAGGTTCTAGTTGT+GGG | 0.489528 | 5_3:-16523992 | Msa0802300:CDS |
| GGCCATAAGGAAAGCAATTG+AGG | 0.489634 | 5_3:-16519614 | Msa0802300:CDS |
| ATCTCCGCCAACTGTTTCGC+GGG | 0.497080 | 5_3:-16519568 | Msa0802300:CDS |
| TTGATGATAAAATGGCCATA+AGG | 0.498693 | 5_3:-16519627 | Msa0802300:CDS |
| GTTGAGGCCATCAAGGATGC+AGG | 0.499395 | 5_3:-16523701 | Msa0802300:CDS |
| GGAAGAAAGAAAGTCTTGTT+CGG | 0.504559 | 5_3:+16519157 | None:intergenic |
| CAAACTTGTTGAGGCCATCA+AGG | 0.505187 | 5_3:-16523708 | Msa0802300:CDS |
| AGTGCATGTCCCATAAGAGC+TGG | 0.509909 | 5_3:+16519670 | None:intergenic |
| GACTTTCTTTCTTCCATGAA+AGG | 0.513933 | 5_3:-16519149 | Msa0802300:intron |
| AAAGTAGCCCGCGAAACAGT+TGG | 0.525770 | 5_3:+16519561 | None:intergenic |
| TTGTTATAAATAGTTGGCAC+AGG | 0.526910 | 5_3:-16524058 | Msa0802300:five_prime_UTR |
| AAAGAGTAAGGTTCTAGTTG+TGG | 0.553788 | 5_3:-16523993 | Msa0802300:CDS |
| GAAACTAGGTGCTCATCTTG+TGG | 0.554098 | 5_3:-16523843 | Msa0802300:CDS |
| GATGTAAGTGAAAGGGATGT+TGG | 0.555898 | 5_3:+16519588 | None:intergenic |
| ACTCTTTCCTCCACGAGACA+AGG | 0.562903 | 5_3:-16519512 | Msa0802300:CDS |
| TTGGCGGAGATGTAAGTGAA+AGG | 0.566709 | 5_3:+16519580 | None:intergenic |
| TATGGCGACGGCAATGTCAA+AGG | 0.572714 | 5_3:-16519481 | Msa0802300:intron |
| ATGGGACATGCACTTGAACC+AGG | 0.574655 | 5_3:-16519661 | Msa0802300:CDS |
| TGGCGGAGATGTAAGTGAAA+GGG | 0.576732 | 5_3:+16519581 | None:intergenic |
| CCTACCTTCAGAATTTGGGA+TGG | 0.579461 | 5_3:-16519695 | Msa0802300:CDS |
| CAACTAGCTCTCTTTGAGTG+AGG | 0.596234 | 5_3:+16519228 | None:intergenic |
| GAGTAAGGTTCTAGTTGTGG+GGG | 0.598357 | 5_3:-16523990 | Msa0802300:CDS |
| CTAGGTGCTCATCTTGTGGA+AGG | 0.605859 | 5_3:-16523839 | Msa0802300:CDS |
| CCATCCCAAATTCTGAAGGT+AGG | 0.607236 | 5_3:+16519695 | None:intergenic |
| TATTGGGAGGCGAATAGTGA+AGG | 0.607791 | 5_3:-16523957 | Msa0802300:CDS |
| GTGCATGTCCCATAAGAGCT+GGG | 0.609221 | 5_3:+16519671 | None:intergenic |
| GGGGTACTGGGTATATTGGG+AGG | 0.610606 | 5_3:-16523970 | Msa0802300:CDS |
| TAGAGAACAACCTTGTCTCG+TGG | 0.612182 | 5_3:+16519502 | None:intergenic |
| TCGAAAATGAACTCCAGACA+TGG | 0.615339 | 5_3:+16523754 | None:intergenic |
| AGAGTAAGGTTCTAGTTGTG+GGG | 0.618291 | 5_3:-16523991 | Msa0802300:CDS |
| AAGGTTGTTCTCTATGGCGA+CGG | 0.618470 | 5_3:-16519493 | Msa0802300:CDS |
| AGAGTGTTCCCATTTGAGAG+AGG | 0.622439 | 5_3:+16519530 | None:intergenic |
| AGAGGTGCAATACACACGCA+TGG | 0.626180 | 5_3:-16518373 | Msa0802300:CDS |
| TTGAGGCCATCAAGGATGCA+GGG | 0.628765 | 5_3:-16523700 | Msa0802300:CDS |
| GGGTCCATCCCAAATTCTGA+AGG | 0.629741 | 5_3:+16519691 | None:intergenic |
| GTGAAGGCAAGTTTAGAACA+AGG | 0.641128 | 5_3:-16523941 | Msa0802300:CDS |
| CAAGGATGCAGGGAACGTCA+AGG | 0.642191 | 5_3:-16523690 | Msa0802300:intron |
| AGCATCAAAGCTTTATCCAG+AGG | 0.647566 | 5_3:-16518391 | Msa0802300:CDS |
| GTTGCAACTCAAACTTGTTG+AGG | 0.664687 | 5_3:-16523717 | Msa0802300:CDS |
| GTAGCCCGCGAAACAGTTGG+CGG | 0.675791 | 5_3:+16519564 | None:intergenic |
| AGAACAACCTTGTCTCGTGG+AGG | 0.687370 | 5_3:+16519505 | None:intergenic |
| AGTAAGGTTCTAGTTGTGGG+GGG | 0.715381 | 5_3:-16523989 | Msa0802300:CDS |
| ATCAGGACGTTGAAGTACGT+AGG | 0.724168 | 5_3:+16523910 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | - | chr5_3:16522295-16522314 | Msa0802300:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | + | chr5_3:16522296-16522315 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | + | chr5_3:16522295-16522314 | None:intergenic | 0.0% |
| !!! | ATTATTTTGTTATAAATAGT+TGG | - | chr5_3:16518401-16518420 | Msa0802300:CDS | 10.0% |
| !! | ATAAAATAAAAATCATGATT+TGG | - | chr5_3:16520524-16520543 | Msa0802300:intron | 10.0% |
| !! | TTTATAAAAAGTTATATTGA+CGG | - | chr5_3:16520582-16520601 | Msa0802300:intron | 10.0% |
| !! | TTGATTTCTATTTAAATTAT+AGG | + | chr5_3:16520707-16520726 | None:intergenic | 10.0% |
| !! | ATAATTTAAATAGAAATCAA+TGG | - | chr5_3:16520707-16520726 | Msa0802300:intron | 10.0% |
| !!! | TAATAAAAAAAAGTCATTTT+TGG | + | chr5_3:16520866-16520885 | None:intergenic | 10.0% |
| !!! | AAGTTTGTTTAATTAATTTT+TGG | + | chr5_3:16521890-16521909 | None:intergenic | 10.0% |
| !! | CATATTAAGAAATATTTATA+AGG | - | chr5_3:16523382-16523401 | Msa0802300:intron | 10.0% |
| !! | TTAAAAAATTTAAGAGTTTA+AGG | - | chr5_3:16523779-16523798 | Msa0802300:CDS | 10.0% |
| !!! | ATAAGTAAATATTTTTTTGT+AGG | - | chr5_3:16523840-16523859 | Msa0802300:CDS | 10.0% |
| !!! | TAAGTAAATATTTTTTTGTA+GGG | - | chr5_3:16523841-16523860 | Msa0802300:CDS | 10.0% |
| !!! | TTTTATATTTTTGAGGAAAA+AGG | - | chr5_3:16518374-16518393 | Msa0802300:CDS | 15.0% |
| !!! | TTATAAAAACTTACTTGTTT+TGG | - | chr5_3:16518962-16518981 | Msa0802300:intron | 15.0% |
| !!! | TAGAGTATATGAATTTTTTT+TGG | + | chr5_3:16519027-16519046 | None:intergenic | 15.0% |
| !! | ACATACAGATTAAATTAATA+TGG | - | chr5_3:16519251-16519270 | Msa0802300:CDS | 15.0% |
| !!! | TGAACACTTTTATTAAAAAA+AGG | - | chr5_3:16520126-16520145 | Msa0802300:intron | 15.0% |
| !!! | AGCATAGATTTAAAATTAAA+CGG | + | chr5_3:16520495-16520514 | None:intergenic | 15.0% |
| !!! | TAAACAATTTTTTTTAGAGT+TGG | + | chr5_3:16520566-16520585 | None:intergenic | 15.0% |
| !! | TCTATAAAAAGTTATATTGT+CGG | - | chr5_3:16520622-16520641 | Msa0802300:intron | 15.0% |
| !! | AATGGAAGATAAAAATAATA+TGG | - | chr5_3:16520725-16520744 | Msa0802300:intron | 15.0% |
| !! | CTAAAAAATTGTTTAATAGT+AGG | - | chr5_3:16521053-16521072 | Msa0802300:intron | 15.0% |
| !!! | ATTTTAAAATGAAATGTTTG+TGG | - | chr5_3:16521436-16521455 | Msa0802300:intron | 15.0% |
| !!! | AACTAGTTTCAAATTATTTT+TGG | + | chr5_3:16521503-16521522 | None:intergenic | 15.0% |
| !! | GCAAAAAAAAAAAAATTTAG+CGG | + | chr5_3:16521583-16521602 | None:intergenic | 15.0% |
| !!! | GTTAATATTTGGAATATTAT+CGG | + | chr5_3:16521964-16521983 | None:intergenic | 15.0% |
| !! | GATAATATTCCAAATATTAA+CGG | - | chr5_3:16521963-16521982 | Msa0802300:intron | 15.0% |
| !! | ATAATATTCCAAATATTAAC+GGG | - | chr5_3:16521964-16521983 | Msa0802300:intron | 15.0% |
| !!! | AATGTTAACTATTTTTTCTA+AGG | + | chr5_3:16523019-16523038 | None:intergenic | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | + | chr5_3:16523457-16523476 | None:intergenic | 15.0% |
| !! | AAGCATAAATTAAACAAATT+TGG | + | chr5_3:16523529-16523548 | None:intergenic | 15.0% |
| !!! | AATTTTTGCGATATTTTTTT+CGG | + | chr5_3:16523613-16523632 | None:intergenic | 15.0% |
| !! | AGATATAAGTAACAAAAATA+TGG | + | chr5_3:16523648-16523667 | None:intergenic | 15.0% |
| !!! | TAAACAAAATTTATTTTAGC+AGG | - | chr5_3:16523807-16523826 | Msa0802300:CDS | 15.0% |
| !!! | AAACAAAATTTATTTTAGCA+GGG | - | chr5_3:16523808-16523827 | Msa0802300:CDS | 15.0% |
| !! | AAAGCTATTAAAATTAAGTA+AGG | - | chr5_3:16523870-16523889 | Msa0802300:CDS | 15.0% |
| !! | ACAAGATAGAAAAACAATAA+TGG | - | chr5_3:16518448-16518467 | Msa0802300:intron | 20.0% |
| !! | CAAGATAGAAAAACAATAAT+GGG | - | chr5_3:16518449-16518468 | Msa0802300:intron | 20.0% |
| !!! | AGCAAAACTCATTTTTTTTA+GGG | + | chr5_3:16518840-16518859 | None:intergenic | 20.0% |
| !!! | TAGCAAAACTCATTTTTTTT+AGG | + | chr5_3:16518841-16518860 | None:intergenic | 20.0% |
| !!! | TGTAAATATTTTCAACTTCT+AGG | + | chr5_3:16519555-16519574 | None:intergenic | 20.0% |
| !! | TGCAGATAACTTATAATTTA+TGG | - | chr5_3:16519726-16519745 | Msa0802300:intron | 20.0% |
| !!! | ACAAGACATAAATCAATTTT+TGG | + | chr5_3:16520078-16520097 | None:intergenic | 20.0% |
| !!! | AAAAATTGATTTATGTCTTG+TGG | - | chr5_3:16520077-16520096 | Msa0802300:intron | 20.0% |
| !!! | TAATAAAAGTGTTCAAGATA+TGG | + | chr5_3:16520121-16520140 | None:intergenic | 20.0% |
| !!! | GCATAGATTTAAAATTAAAC+GGG | + | chr5_3:16520494-16520513 | None:intergenic | 20.0% |
| !! | AAAAATAATATGGCTAACAA+TGG | - | chr5_3:16520735-16520754 | Msa0802300:intron | 20.0% |
| !! | CATAGAAAAATAAATATGAC+AGG | + | chr5_3:16521915-16521934 | None:intergenic | 20.0% |
| !!! | GATAGGATTTTATATATAGA+GGG | - | chr5_3:16522195-16522214 | Msa0802300:intron | 20.0% |
| !! | ATATATTACACACTTTCTTT+AGG | - | chr5_3:16522603-16522622 | Msa0802300:intron | 20.0% |
| !! | TATATTACACACTTTCTTTA+GGG | - | chr5_3:16522604-16522623 | Msa0802300:intron | 20.0% |
| !! | TGAACAAGACAATATATATA+AGG | - | chr5_3:16523200-16523219 | Msa0802300:intron | 20.0% |
| !!! | ATAAGGGTTAATTATGTTTT+TGG | - | chr5_3:16523399-16523418 | Msa0802300:intron | 20.0% |
| !!! | GTTTTTCAACAATTTTTTAC+TGG | - | chr5_3:16523559-16523578 | Msa0802300:intron | 20.0% |
| !!! | AATAGGGTTAAATATGTTTT+TGG | + | chr5_3:16523928-16523947 | None:intergenic | 20.0% |
| !! | TCAAGAGTCAATTATAAATA+GGG | + | chr5_3:16523944-16523963 | None:intergenic | 20.0% |
| !! | ATCAAGAGTCAATTATAAAT+AGG | + | chr5_3:16523945-16523964 | None:intergenic | 20.0% |
| !!! | ATTTATAATTGACTCTTGAT+TGG | - | chr5_3:16523945-16523964 | Msa0802300:CDS | 20.0% |
| !!! | TTCTATCATATTTTCTTTGA+AGG | - | chr5_3:16524015-16524034 | Msa0802300:exon | 20.0% |
| !!! | TCTATCATATTTTCTTTGAA+GGG | - | chr5_3:16524016-16524035 | Msa0802300:exon | 20.0% |
| !! | TTTTTCTAATCATCAGAGTT+TGG | - | chr5_3:16518652-16518671 | Msa0802300:intron | 25.0% |
| !!! | GCAAAACTCATTTTTTTTAG+GGG | + | chr5_3:16518839-16518858 | None:intergenic | 25.0% |
| ! | ATATACTCTACTAGAAGAAA+TGG | - | chr5_3:16519037-16519056 | Msa0802300:intron | 25.0% |
| !! | TATTTTGTCACATAGGATTA+CGG | + | chr5_3:16519154-16519173 | None:intergenic | 25.0% |
| !!! | TCTTTCTTATTTTGTCACAT+AGG | + | chr5_3:16519161-16519180 | None:intergenic | 25.0% |
| !! | TATTTTGTCACATAGGATTA+CGG | + | chr5_3:16519154-16519173 | None:intergenic | 25.0% |
| !!! | TCTTTCTTATTTTGTCACAT+AGG | + | chr5_3:16519161-16519180 | None:intergenic | 25.0% |
| !!! | CTTTGATTTTGACAATGTTT+TGG | + | chr5_3:16520245-16520264 | None:intergenic | 25.0% |
| !!! | ATTATATTTTGAGAGACACT+AGG | + | chr5_3:16520282-16520301 | None:intergenic | 25.0% |
| !! | ATAAAAATCATGATTTGGAG+TGG | - | chr5_3:16520529-16520548 | Msa0802300:intron | 25.0% |
| ! | TAAGCTATAAGTAAGCTTAT+TGG | - | chr5_3:16520896-16520915 | Msa0802300:intron | 25.0% |
| ! | CATTATCACATGTTTGAATT+GGG | + | chr5_3:16520936-16520955 | None:intergenic | 25.0% |
| ! | ACTCTTGCTTCATAAATTTA+TGG | + | chr5_3:16521115-16521134 | None:intergenic | 25.0% |
| ! | TACAATACACTCATAAATTG+AGG | + | chr5_3:16521147-16521166 | None:intergenic | 25.0% |
| !! | TAGACATACCATACTTTTAA+GGG | + | chr5_3:16521176-16521195 | None:intergenic | 25.0% |
| !! | TTAGACATACCATACTTTTA+AGG | + | chr5_3:16521177-16521196 | None:intergenic | 25.0% |
| ! | TGAGAAAAAAGAAAAGAAAG+AGG | - | chr5_3:16521699-16521718 | Msa0802300:intron | 25.0% |
| !! | TTCTTTTATGTTACTATGCA+AGG | + | chr5_3:16521781-16521800 | None:intergenic | 25.0% |
| ! | TGTAATATCCCGTTAATATT+TGG | + | chr5_3:16521975-16521994 | None:intergenic | 25.0% |
| ! | TGTAAATCTCATATTAACAC+AGG | - | chr5_3:16522089-16522108 | Msa0802300:intron | 25.0% |
| ! | GTAAATCTCATATTAACACA+GGG | - | chr5_3:16522090-16522109 | Msa0802300:intron | 25.0% |
| ! | TAAATCTCATATTAACACAG+GGG | - | chr5_3:16522091-16522110 | Msa0802300:intron | 25.0% |
| ! | TGGTAATTTCCTAGAAATAA+TGG | - | chr5_3:16522119-16522138 | Msa0802300:intron | 25.0% |
| ! | GGTAATTTCCTAGAAATAAT+GGG | - | chr5_3:16522120-16522139 | Msa0802300:intron | 25.0% |
| ! | GTAATTTCCTAGAAATAATG+GGG | - | chr5_3:16522121-16522140 | Msa0802300:intron | 25.0% |
| !! | GGATAGGATTTTATATATAG+AGG | - | chr5_3:16522194-16522213 | Msa0802300:intron | 25.0% |
| !! | CACAATAAAGATTAGTTCAA+GGG | + | chr5_3:16522274-16522293 | None:intergenic | 25.0% |
| !! | ACACAATAAAGATTAGTTCA+AGG | + | chr5_3:16522275-16522294 | None:intergenic | 25.0% |
| !!! | TTGACTTGAATCACTTTTTT+AGG | - | chr5_3:16522647-16522666 | Msa0802300:intron | 25.0% |
| !!! | TGACTTGAATCACTTTTTTA+GGG | - | chr5_3:16522648-16522667 | Msa0802300:intron | 25.0% |
| !!! | TGAATTGATTTTATCTCACA+TGG | - | chr5_3:16522686-16522705 | Msa0802300:intron | 25.0% |
| !! | AGTCACATTTGATGATAAAA+TGG | - | chr5_3:16522830-16522849 | Msa0802300:intron | 25.0% |
| !!! | GAGTGCAAAATTTTTTTGTA+GGG | + | chr5_3:16523486-16523505 | None:intergenic | 25.0% |
| !!! | TGAGTGCAAAATTTTTTTGT+AGG | + | chr5_3:16523487-16523506 | None:intergenic | 25.0% |
| ! | AAACAAATTTGGATTGAGTA+AGG | + | chr5_3:16523518-16523537 | None:intergenic | 25.0% |
| ! | GTGTTAAGAACGTTATTAAA+AGG | - | chr5_3:16523583-16523602 | Msa0802300:intron | 25.0% |
| !! | TTTGACAAATTTTGAACTGA+AGG | - | chr5_3:16524041-16524060 | Msa0802300:five_prime_UTR | 25.0% |
| TTGTTATAAATAGTTGGCAC+AGG | - | chr5_3:16518407-16518426 | Msa0802300:CDS | 30.0% | |
| CACAGGAAAAATTGAACTAT+AGG | - | chr5_3:16518424-16518443 | Msa0802300:CDS | 30.0% | |
| ! | AACAATAATGGGAAAGAGTA+AGG | - | chr5_3:16518460-16518479 | Msa0802300:intron | 30.0% |
| CTTCTTTCATTCAAGAAACT+AGG | - | chr5_3:16518608-16518627 | Msa0802300:intron | 30.0% | |
| GATGCTTAAGTAATGACTTT+GGG | - | chr5_3:16518984-16519003 | Msa0802300:intron | 30.0% | |
| TTGTTCTTCAACTAATCTAG+TGG | + | chr5_3:16519069-16519088 | None:intergenic | 30.0% | |
| TTGTTCTTCAACTAATCTAG+TGG | + | chr5_3:16519069-16519088 | None:intergenic | 30.0% | |
| ! | TTCTAGCTATCTCTACTTAT+GGG | + | chr5_3:16520023-16520042 | None:intergenic | 30.0% |
| !! | GATTTTGACAATGTTTTGGA+TGG | + | chr5_3:16520241-16520260 | None:intergenic | 30.0% |
| ! | GTAAGTTTTTGTGACTTCTA+GGG | + | chr5_3:16520326-16520345 | None:intergenic | 30.0% |
| TCGAATGAATGTAAATTGTG+TGG | + | chr5_3:16520356-16520375 | None:intergenic | 30.0% | |
| GCATTATCACATGTTTGAAT+TGG | + | chr5_3:16520937-16520956 | None:intergenic | 30.0% | |
| !! | AGTTGTATGAGTGTTTTAGA+TGG | - | chr5_3:16520957-16520976 | Msa0802300:intron | 30.0% |
| TTTAGATGGTGTTTGTCATT+TGG | - | chr5_3:16520971-16520990 | Msa0802300:intron | 30.0% | |
| TTCAAGTGAAATAAGATGTG+TGG | - | chr5_3:16521000-16521019 | Msa0802300:intron | 30.0% | |
| CTCATAAATTGAGGTGTATT+GGG | + | chr5_3:16521138-16521157 | None:intergenic | 30.0% | |
| ACTCATAAATTGAGGTGTAT+TGG | + | chr5_3:16521139-16521158 | None:intergenic | 30.0% | |
| TAGAAGTTCCCTTAAAAGTA+TGG | - | chr5_3:16521165-16521184 | Msa0802300:intron | 30.0% | |
| ! | TGAAGTAAAGTATTTAGCAG+TGG | - | chr5_3:16521529-16521548 | Msa0802300:intron | 30.0% |
| TCTATCTCTTAAACGTAACT+TGG | - | chr5_3:16521858-16521877 | Msa0802300:intron | 30.0% | |
| CTATCTCTTAAACGTAACTT+GGG | - | chr5_3:16521859-16521878 | Msa0802300:intron | 30.0% | |
| TATCGGATTAATGTGTTAAG+AGG | + | chr5_3:16521947-16521966 | None:intergenic | 30.0% | |
| !!! | ATATTAACACAGGGGTATTT+TGG | - | chr5_3:16522099-16522118 | Msa0802300:intron | 30.0% |
| TCTTAAAATGAGAGATGAGA+GGG | - | chr5_3:16522237-16522256 | Msa0802300:intron | 30.0% | |
| ACACCTTCATAAAAAGTAGT+TGG | - | chr5_3:16522360-16522379 | Msa0802300:intron | 30.0% | |
| !!! | ACACCAACTACTTTTTATGA+AGG | + | chr5_3:16522455-16522474 | None:intergenic | 30.0% |
| ATAAAAGACACCTTCACAAA+AGG | - | chr5_3:16522504-16522523 | Msa0802300:intron | 30.0% | |
| ! | TTGATGATAAAATGGCCATA+AGG | - | chr5_3:16522838-16522857 | Msa0802300:intron | 30.0% |
| AAGTAAGGACTAAACTTACA+AGG | + | chr5_3:16523442-16523461 | None:intergenic | 30.0% | |
| !!! | TTTTGCGATATTTTTTTCGG+AGG | + | chr5_3:16523610-16523629 | None:intergenic | 30.0% |
| ! | CAAGTTTAGAACACTATGAA+AGG | + | chr5_3:16523745-16523764 | None:intergenic | 30.0% |
| AAGTAAGGACTAAACTTAGA+AGG | - | chr5_3:16523885-16523904 | Msa0802300:CDS | 30.0% | |
| ! | TTAGAAGGTCGCAATTTTAT+AGG | - | chr5_3:16523900-16523919 | Msa0802300:CDS | 30.0% |
| ! | TAGAAGGTCGCAATTTTATA+GGG | - | chr5_3:16523901-16523920 | Msa0802300:CDS | 30.0% |
| ! | ACAAATTTTGAACTGAAGGA+TGG | - | chr5_3:16524045-16524064 | Msa0802300:five_prime_UTR | 30.0% |
| ! | AAAGAGTAAGGTTCTAGTTG+TGG | - | chr5_3:16518472-16518491 | Msa0802300:intron | 35.0% |
| ! | AAGAGTAAGGTTCTAGTTGT+GGG | - | chr5_3:16518473-16518492 | Msa0802300:intron | 35.0% |
| TACTTCAACGTCCTGATATA+GGG | - | chr5_3:16518561-16518580 | Msa0802300:intron | 35.0% | |
| !!! | ACTCATTTTTTTTAGGGGAG+TGG | + | chr5_3:16518834-16518853 | None:intergenic | 35.0% |
| GGATGCTTAAGTAATGACTT+TGG | - | chr5_3:16518983-16519002 | Msa0802300:intron | 35.0% | |
| !! | AAGTAATGACTTTGGGACAT+TGG | - | chr5_3:16518991-16519010 | Msa0802300:intron | 35.0% |
| TTTCATGTAGGGACAACTAA+TGG | + | chr5_3:16519641-16519660 | None:intergenic | 35.0% | |
| TTAGTTGTCCCTACATGAAA+TGG | - | chr5_3:16519641-16519660 | Msa0802300:CDS | 35.0% | |
| ! | CTTCTAGCTATCTCTACTTA+TGG | + | chr5_3:16520024-16520043 | None:intergenic | 35.0% |
| !! | ATACATGTTGTGCTTTAGGA+GGG | - | chr5_3:16520158-16520177 | Msa0802300:intron | 35.0% |
| !! | AATGTTTTGGATGGTCTTTG+TGG | + | chr5_3:16520232-16520251 | None:intergenic | 35.0% |
| ! | CGTAAGTTTTTGTGACTTCT+AGG | + | chr5_3:16520327-16520346 | None:intergenic | 35.0% |
| AGAAGTCACAAAAACTTACG+AGG | - | chr5_3:16520327-16520346 | Msa0802300:intron | 35.0% | |
| AATACTGTGTGAAATAGCGT+TGG | - | chr5_3:16520788-16520807 | Msa0802300:intron | 35.0% | |
| ATACTGTGTGAAATAGCGTT+GGG | - | chr5_3:16520789-16520808 | Msa0802300:intron | 35.0% | |
| AGATGTGTGGATGTTTGTTT+AGG | - | chr5_3:16521013-16521032 | Msa0802300:intron | 35.0% | |
| CATTCATTGTAGCAGTACAT+CGG | + | chr5_3:16521309-16521328 | None:intergenic | 35.0% | |
| TGATATGTCAGAGAAGAGAA+AGG | - | chr5_3:16521339-16521358 | Msa0802300:intron | 35.0% | |
| GATATGTCAGAGAAGAGAAA+GGG | - | chr5_3:16521340-16521359 | Msa0802300:intron | 35.0% | |
| ! | AGTAAAGTATTTAGCAGTGG+CGG | - | chr5_3:16521532-16521551 | Msa0802300:intron | 35.0% |
| !!! | GGAGCCAGACAATTTTTTTT+GGG | - | chr5_3:16521553-16521572 | Msa0802300:intron | 35.0% |
| !!! | GAGCCAGACAATTTTTTTTG+GGG | - | chr5_3:16521554-16521573 | Msa0802300:intron | 35.0% |
| AACGAATTGTGAAGGTTTGA+GGG | - | chr5_3:16521613-16521632 | Msa0802300:intron | 35.0% | |
| GTTCAAGACAAAGAAGAAAC+TGG | + | chr5_3:16521830-16521849 | None:intergenic | 35.0% | |
| ! | GATTGTAGAACAAAGTTGGT+CGG | + | chr5_3:16522015-16522034 | None:intergenic | 35.0% |
| GACAGATTGTAGAACAAAGT+TGG | + | chr5_3:16522019-16522038 | None:intergenic | 35.0% | |
| ! | AAAGCGTTTCAGAAAAAGGT+GGG | - | chr5_3:16522056-16522075 | Msa0802300:intron | 35.0% |
| ! | ATTTCCTAGAAATAATGGGG+TGG | - | chr5_3:16522124-16522143 | Msa0802300:intron | 35.0% |
| ! | CTCTCATCTCTCATTTTAAG+AGG | + | chr5_3:16522238-16522257 | None:intergenic | 35.0% |
| CTCTTAAAATGAGAGATGAG+AGG | - | chr5_3:16522236-16522255 | Msa0802300:intron | 35.0% | |
| CACCTTCATAAAAAGTAGTG+TGG | - | chr5_3:16522361-16522380 | Msa0802300:intron | 35.0% | |
| !!! | CACCACACTACTTTTTATGA+AGG | + | chr5_3:16522366-16522385 | None:intergenic | 35.0% |
| ! | TTTTATCAAGTCACACCTCA+AGG | - | chr5_3:16522388-16522407 | Msa0802300:intron | 35.0% |
| AAAGTGAAAATCACACCTTG+AGG | + | chr5_3:16522406-16522425 | None:intergenic | 35.0% | |
| ! | ATAGAAGACACCTTTTGTGA+AGG | + | chr5_3:16522517-16522536 | None:intergenic | 35.0% |
| GTTTCCTACCTTCAGAATTT+GGG | - | chr5_3:16522766-16522785 | Msa0802300:intron | 35.0% | |
| ATCCTCAATTGCTTTCCTTA+TGG | + | chr5_3:16522856-16522875 | None:intergenic | 35.0% | |
| ACATGAGTTGTACATGTTTG+TGG | - | chr5_3:16523108-16523127 | Msa0802300:intron | 35.0% | |
| GTTTGTGGCAGTTGTTTATA+TGG | - | chr5_3:16523123-16523142 | Msa0802300:intron | 35.0% | |
| AAAGAGAGCTAGTTGAGAAA+TGG | - | chr5_3:16523245-16523264 | Msa0802300:intron | 35.0% | |
| AAGAGAGCTAGTTGAGAAAT+GGG | - | chr5_3:16523246-16523265 | Msa0802300:intron | 35.0% | |
| !! | AAGAAAGTCTTGTTCGGATA+TGG | + | chr5_3:16523305-16523324 | None:intergenic | 35.0% |
| !! | GGAAGAAAGAAAGTCTTGTT+CGG | + | chr5_3:16523311-16523330 | None:intergenic | 35.0% |
| GACTTTCTTTCTTCCATGAA+AGG | - | chr5_3:16523316-16523335 | Msa0802300:intron | 35.0% | |
| ! | TACAAGGTCGCAATTTTGTA+GGG | + | chr5_3:16523426-16523445 | None:intergenic | 35.0% |
| ! | TTACAAGGTCGCAATTTTGT+AGG | + | chr5_3:16523427-16523446 | None:intergenic | 35.0% |
| ! | TAATTGACTCTTGATTGGTG+TGG | - | chr5_3:16523950-16523969 | Msa0802300:CDS | 35.0% |
| ! | AGAGTAAGGTTCTAGTTGTG+GGG | - | chr5_3:16518474-16518493 | Msa0802300:intron | 40.0% |
| ! | GTGAAGGCAAGTTTAGAACA+AGG | - | chr5_3:16518524-16518543 | Msa0802300:intron | 40.0% |
| GTACTTCAACGTCCTGATAT+AGG | - | chr5_3:16518560-16518579 | Msa0802300:intron | 40.0% | |
| TCAGTATCAAGCCCTATATC+AGG | + | chr5_3:16518575-16518594 | None:intergenic | 40.0% | |
| !! | GTTGTTATTTGCACCATGTC+TGG | - | chr5_3:16518698-16518717 | Msa0802300:intron | 40.0% |
| TCGAAAATGAACTCCAGACA+TGG | + | chr5_3:16518714-16518733 | None:intergenic | 40.0% | |
| !! | GTTGCAACTCAAACTTGTTG+AGG | - | chr5_3:16518748-16518767 | Msa0802300:intron | 40.0% |
| ! | TTTTGCTAACCAGTGTTCTC+AGG | - | chr5_3:16518853-16518872 | Msa0802300:intron | 40.0% |
| TTTGCTAACCAGTGTTCTCA+GGG | - | chr5_3:16518854-16518873 | Msa0802300:intron | 40.0% | |
| TTGTCCCTACATGAAATGGT+TGG | - | chr5_3:16519645-16519664 | Msa0802300:CDS | 40.0% | |
| TGTCCCTACATGAAATGGTT+GGG | - | chr5_3:16519646-16519665 | Msa0802300:CDS | 40.0% | |
| GCTATCTCTACTTATGGGTT+AGG | + | chr5_3:16520018-16520037 | None:intergenic | 40.0% | |
| GCTGATACATGTTGTGCTTT+AGG | - | chr5_3:16520154-16520173 | Msa0802300:intron | 40.0% | |
| ! | GATACATGTTGTGCTTTAGG+AGG | - | chr5_3:16520157-16520176 | Msa0802300:intron | 40.0% |
| CCATAACAGTTTCACTAGCA+AGG | + | chr5_3:16520191-16520210 | None:intergenic | 40.0% | |
| CCTTGCTAGTGAAACTGTTA+TGG | - | chr5_3:16520188-16520207 | Msa0802300:intron | 40.0% | |
| TTGAGAGACACTAGGATAAG+TGG | + | chr5_3:16520274-16520293 | None:intergenic | 40.0% | |
| AATCTTGTTGCCCCAAAGAT+TGG | - | chr5_3:16520299-16520318 | Msa0802300:intron | 40.0% | |
| !! | ACTTCTAGGGTCCAATCTTT+GGG | + | chr5_3:16520313-16520332 | None:intergenic | 40.0% |
| ACCTCTTCTCCTTAAACCTT+CGG | + | chr5_3:16521254-16521273 | None:intergenic | 40.0% | |
| !!! | CGGAGCCAGACAATTTTTTT+TGG | - | chr5_3:16521552-16521571 | Msa0802300:intron | 40.0% |
| CCACCCCAAAAAAAATTGTC+TGG | + | chr5_3:16521560-16521579 | None:intergenic | 40.0% | |
| !!! | CCAGACAATTTTTTTTGGGG+TGG | - | chr5_3:16521557-16521576 | Msa0802300:intron | 40.0% |
| ACCTCTTGAACGAATTGTGA+AGG | - | chr5_3:16521605-16521624 | Msa0802300:intron | 40.0% | |
| ACCTTCACAATTCGTTCAAG+AGG | + | chr5_3:16521609-16521628 | None:intergenic | 40.0% | |
| GAACGAATTGTGAAGGTTTG+AGG | - | chr5_3:16521612-16521631 | Msa0802300:intron | 40.0% | |
| !! | TGCAAGGCACTTTTACTGTT+TGG | + | chr5_3:16521765-16521784 | None:intergenic | 40.0% |
| AAGAAACTGGATAGCAGTCA+CGG | + | chr5_3:16521817-16521836 | None:intergenic | 40.0% | |
| !! | CGGGATATTACAGTGTTGAT+TGG | - | chr5_3:16521983-16522002 | Msa0802300:intron | 40.0% |
| !! | GAGGAAAGCGTTTCAGAAAA+AGG | - | chr5_3:16522052-16522071 | Msa0802300:intron | 40.0% |
| !! | GAAAGCGTTTCAGAAAAAGG+TGG | - | chr5_3:16522055-16522074 | Msa0802300:intron | 40.0% |
| TATCCACTAAATACCAGTGG+CGG | + | chr5_3:16522179-16522198 | None:intergenic | 40.0% | |
| TCCTATCCACTAAATACCAG+TGG | + | chr5_3:16522182-16522201 | None:intergenic | 40.0% | |
| CGTTTCCTACCTTCAGAATT+TGG | - | chr5_3:16522765-16522784 | Msa0802300:intron | 40.0% | |
| TCATCAAATGTGACTCTTCC+TGG | + | chr5_3:16522825-16522844 | None:intergenic | 40.0% | |
| GATGTAAGTGAAAGGGATGT+TGG | + | chr5_3:16522880-16522899 | None:intergenic | 40.0% | |
| TTGCTAATGTGTGCTTAGCT+AGG | - | chr5_3:16523047-16523066 | Msa0802300:intron | 40.0% | |
| TGCTAATGTGTGCTTAGCTA+GGG | - | chr5_3:16523048-16523067 | Msa0802300:intron | 40.0% | |
| ! | ATTGTCTTGTTCAACGTTCG+AGG | + | chr5_3:16523193-16523212 | None:intergenic | 40.0% |
| ! | CTTTGAGTGAGGATGTTTTC+TGG | + | chr5_3:16523229-16523248 | None:intergenic | 40.0% |
| GAGAAATGGGAGAAACTTAC+TGG | - | chr5_3:16523259-16523278 | Msa0802300:intron | 40.0% | |
| ! | AGCATCAAAGCTTTATCCAG+AGG | - | chr5_3:16524074-16524093 | Msa0802300:five_prime_UTR | 40.0% |
| ! | GAGTAAGGTTCTAGTTGTGG+GGG | - | chr5_3:16518475-16518494 | Msa0802300:intron | 45.0% |
| ! | AGTAAGGTTCTAGTTGTGGG+GGG | - | chr5_3:16518476-16518495 | Msa0802300:intron | 45.0% |
| TATTGGGAGGCGAATAGTGA+AGG | - | chr5_3:16518508-16518527 | Msa0802300:intron | 45.0% | |
| ATCAGGACGTTGAAGTACGT+AGG | + | chr5_3:16518558-16518577 | None:intergenic | 45.0% | |
| GAAACTAGGTGCTCATCTTG+TGG | - | chr5_3:16518622-16518641 | Msa0802300:intron | 45.0% | |
| !! | CAAACTTGTTGAGGCCATCA+AGG | - | chr5_3:16518757-16518776 | Msa0802300:intron | 45.0% |
| TGTTCTCAGGGCAATGGTTA+AGG | - | chr5_3:16518866-16518885 | Msa0802300:intron | 45.0% | |
| GTCCCTACATGAAATGGTTG+GGG | - | chr5_3:16519647-16519666 | Msa0802300:CDS | 45.0% | |
| AGCCCCAACCATTTCATGTA+GGG | + | chr5_3:16519652-16519671 | None:intergenic | 45.0% | |
| TAGCCCCAACCATTTCATGT+AGG | + | chr5_3:16519653-16519672 | None:intergenic | 45.0% | |
| GAAATGGTTGGGGCTATGTT+TGG | - | chr5_3:16519657-16519676 | Msa0802300:CDS | 45.0% | |
| !! | CTTCTAGGGTCCAATCTTTG+GGG | + | chr5_3:16520312-16520331 | None:intergenic | 45.0% |
| !! | GACTTCTAGGGTCCAATCTT+TGG | + | chr5_3:16520314-16520333 | None:intergenic | 45.0% |
| GTTGGTTGGATGCATTCGTT+AGG | + | chr5_3:16521221-16521240 | None:intergenic | 45.0% | |
| AGAAGAGGTGATGACTGATG+AGG | - | chr5_3:16521265-16521284 | Msa0802300:intron | 45.0% | |
| TCATTGTAGCAGTACATCGG+TGG | + | chr5_3:16521306-16521325 | None:intergenic | 45.0% | |
| ATGTCAGAGAAGAGAAAGGG+TGG | - | chr5_3:16521343-16521362 | Msa0802300:intron | 45.0% | |
| TGAAGGTTTGAGGGAATGCT+TGG | - | chr5_3:16521622-16521641 | Msa0802300:intron | 45.0% | |
| ! | AATGCTTGGTGGAATGGAGA+TGG | - | chr5_3:16521636-16521655 | Msa0802300:intron | 45.0% |
| ! | ATGCTTGGTGGAATGGAGAT+GGG | - | chr5_3:16521637-16521656 | Msa0802300:intron | 45.0% |
| AGAAACTGGATAGCAGTCAC+GGG | + | chr5_3:16521816-16521835 | None:intergenic | 45.0% | |
| TCTGTCACCATAGACAAGAG+AGG | - | chr5_3:16522033-16522052 | Msa0802300:intron | 45.0% | |
| ACGCTTTCCTCTCTTGTCTA+TGG | + | chr5_3:16522043-16522062 | None:intergenic | 45.0% | |
| CGTTTCAGAAAAAGGTGGGA+TGG | - | chr5_3:16522060-16522079 | Msa0802300:intron | 45.0% | |
| ! | ATGGCCACCCCATTATTTCT+AGG | + | chr5_3:16522131-16522150 | None:intergenic | 45.0% |
| ! | TAGAAATAATGGGGTGGCCA+TGG | - | chr5_3:16522130-16522149 | Msa0802300:intron | 45.0% |
| ! | GCCACTGGTATTTAGTGGAT+AGG | - | chr5_3:16522178-16522197 | Msa0802300:intron | 45.0% |
| ! | CCATCCCAAATTCTGAAGGT+AGG | + | chr5_3:16522773-16522792 | None:intergenic | 45.0% |
| CCTACCTTCAGAATTTGGGA+TGG | - | chr5_3:16522770-16522789 | Msa0802300:intron | 45.0% | |
| GGCCATAAGGAAAGCAATTG+AGG | - | chr5_3:16522851-16522870 | Msa0802300:intron | 45.0% | |
| TGGCGGAGATGTAAGTGAAA+GGG | + | chr5_3:16522887-16522906 | None:intergenic | 45.0% | |
| TTGGCGGAGATGTAAGTGAA+AGG | + | chr5_3:16522888-16522907 | None:intergenic | 45.0% | |
| TCCCATTTGAGAGAGGTTAC+CGG | + | chr5_3:16522931-16522950 | None:intergenic | 45.0% | |
| ! | AGAGTGTTCCCATTTGAGAG+AGG | + | chr5_3:16522938-16522957 | None:intergenic | 45.0% |
| TAGAGAACAACCTTGTCTCG+TGG | + | chr5_3:16522966-16522985 | None:intergenic | 45.0% | |
| CGAGACAAGGTTGTTCTCTA+TGG | - | chr5_3:16522966-16522985 | Msa0802300:intron | 45.0% | |
| AAGGTTGTTCTCTATGGCGA+CGG | - | chr5_3:16522972-16522991 | Msa0802300:intron | 45.0% | |
| ! | TGAGTGAGGATGTTTTCTGG+TGG | + | chr5_3:16523226-16523245 | None:intergenic | 45.0% |
| ! | CAACTAGCTCTCTTTGAGTG+AGG | + | chr5_3:16523240-16523259 | None:intergenic | 45.0% |
| TCTTGATTGGTGTGGAATGC+AGG | - | chr5_3:16523958-16523977 | Msa0802300:CDS | 45.0% | |
| ATTGGTGTGGAATGCAGGTT+TGG | - | chr5_3:16523963-16523982 | Msa0802300:CDS | 45.0% | |
| !!! | ATTATTTTTTTATATTTTTG+AGG | - | chr5_3:16518367-16518386 | Msa0802300:CDS | 5.0% |
| !!! | TAATTTTATTAATTTAAAGA+TGG | + | chr5_3:16519202-16519221 | None:intergenic | 5.0% |
| !!! | TAATTTTATTAATTTAAAGA+TGG | + | chr5_3:16519202-16519221 | None:intergenic | 5.0% |
| !! | ATATTAAGAAATATTTATAA+GGG | - | chr5_3:16523383-16523402 | Msa0802300:intron | 5.0% |
| !! | TTCTAGTTGTGGGGGGTACT+GGG | - | chr5_3:16518483-16518502 | Msa0802300:intron | 50.0% |
| !! | TGGGGGGTACTGGGTATATT+GGG | - | chr5_3:16518492-16518511 | Msa0802300:intron | 50.0% |
| CTAGGTGCTCATCTTGTGGA+AGG | - | chr5_3:16518626-16518645 | Msa0802300:intron | 50.0% | |
| TTGAGGCCATCAAGGATGCA+GGG | - | chr5_3:16518765-16518784 | Msa0802300:intron | 50.0% | |
| AACCAGTGTTCTCAGGGCAA+TGG | - | chr5_3:16518860-16518879 | Msa0802300:intron | 50.0% | |
| AACCATTGCCCTGAGAACAC+TGG | + | chr5_3:16518865-16518884 | None:intergenic | 50.0% | |
| GGTTGGATGCATTCGTTAGG+TGG | + | chr5_3:16521218-16521237 | None:intergenic | 50.0% | |
| CGAATGCATCCAACCAACCT+TGG | - | chr5_3:16521223-16521242 | Msa0802300:intron | 50.0% | |
| ATGCATCCAACCAACCTTGG+CGG | - | chr5_3:16521226-16521245 | Msa0802300:intron | 50.0% | |
| GCCGAAGGTTTAAGGAGAAG+AGG | - | chr5_3:16521250-16521269 | Msa0802300:intron | 50.0% | |
| GAGAAGAGAAAGGGTGGCAA+TGG | - | chr5_3:16521349-16521368 | Msa0802300:intron | 50.0% | |
| AGAAAGGGTGGCAATGGTAG+AGG | - | chr5_3:16521355-16521374 | Msa0802300:intron | 50.0% | |
| CAATGGTAGAGGTTGTGGTG+AGG | - | chr5_3:16521366-16521385 | Msa0802300:intron | 50.0% | |
| GGTTGTGGTGAGGTGAACAA+AGG | - | chr5_3:16521376-16521395 | Msa0802300:intron | 50.0% | |
| TGAAGACACTCGTGTGATCG+TGG | - | chr5_3:16521403-16521422 | Msa0802300:intron | 50.0% | |
| AGGTTTGAGGGAATGCTTGG+TGG | - | chr5_3:16521625-16521644 | Msa0802300:intron | 50.0% | |
| ! | TGAGGGAATGCTTGGTGGAA+TGG | - | chr5_3:16521630-16521649 | Msa0802300:intron | 50.0% |
| AGAGGACGCGAGAGATAGAA+AGG | - | chr5_3:16521717-16521736 | Msa0802300:intron | 50.0% | |
| CAGAAAAAGGTGGGATGGCA+TGG | - | chr5_3:16522065-16522084 | Msa0802300:intron | 50.0% | |
| CTGAAGGTAGGAAACGCTAG+CGG | + | chr5_3:16522761-16522780 | None:intergenic | 50.0% | |
| GGGTCCATCCCAAATTCTGA+AGG | + | chr5_3:16522777-16522796 | None:intergenic | 50.0% | |
| GTGCATGTCCCATAAGAGCT+GGG | + | chr5_3:16522797-16522816 | None:intergenic | 50.0% | |
| AGTGCATGTCCCATAAGAGC+TGG | + | chr5_3:16522798-16522817 | None:intergenic | 50.0% | |
| ATGGGACATGCACTTGAACC+AGG | - | chr5_3:16522804-16522823 | Msa0802300:intron | 50.0% | |
| AAAGTAGCCCGCGAAACAGT+TGG | + | chr5_3:16522907-16522926 | None:intergenic | 50.0% | |
| TGCCGGTAACCTCTCTCAAA+TGG | - | chr5_3:16522926-16522945 | Msa0802300:intron | 50.0% | |
| GCCGGTAACCTCTCTCAAAT+GGG | - | chr5_3:16522927-16522946 | Msa0802300:intron | 50.0% | |
| ACTCTTTCCTCCACGAGACA+AGG | - | chr5_3:16522953-16522972 | Msa0802300:intron | 50.0% | |
| AGAACAACCTTGTCTCGTGG+AGG | + | chr5_3:16522963-16522982 | None:intergenic | 50.0% | |
| TATGGCGACGGCAATGTCAA+AGG | - | chr5_3:16522984-16523003 | Msa0802300:intron | 50.0% | |
| AATGCAGGTTTGGACCTTGC+AGG | - | chr5_3:16523973-16523992 | Msa0802300:CDS | 50.0% | |
| AGAAATGCCCCACTGCTACT+TGG | + | chr5_3:16523999-16524018 | None:intergenic | 50.0% | |
| ATGCGTGTGTATTGCACCTC+TGG | + | chr5_3:16524093-16524112 | None:intergenic | 50.0% | |
| ! | AGAGGTGCAATACACACGCA+TGG | - | chr5_3:16524092-16524111 | Msa0802300:five_prime_UTR | 50.0% |
| ! | GTTCTAGTTGTGGGGGGTAC+TGG | - | chr5_3:16518482-16518501 | Msa0802300:intron | 55.0% |
| !! | GTGGGGGGTACTGGGTATAT+TGG | - | chr5_3:16518491-16518510 | Msa0802300:intron | 55.0% |
| !! | GGGGTACTGGGTATATTGGG+AGG | - | chr5_3:16518495-16518514 | Msa0802300:intron | 55.0% |
| GTTGAGGCCATCAAGGATGC+AGG | - | chr5_3:16518764-16518783 | Msa0802300:intron | 55.0% | |
| GACGTTCCCTGCATCCTTGA+TGG | + | chr5_3:16518774-16518793 | None:intergenic | 55.0% | |
| CAAGGATGCAGGGAACGTCA+AGG | - | chr5_3:16518775-16518794 | Msa0802300:intron | 55.0% | |
| TTAAACCTTCGGCTCCGCCA+AGG | + | chr5_3:16521243-16521262 | None:intergenic | 55.0% | |
| TTGGCGGAGCCGAAGGTTTA+AGG | - | chr5_3:16521242-16521261 | Msa0802300:intron | 55.0% | |
| GGTGGCAATGGTAGAGGTTG+TGG | - | chr5_3:16521361-16521380 | Msa0802300:intron | 55.0% | |
| GGTGGAATGGAGATGGGAAG+AGG | - | chr5_3:16521643-16521662 | Msa0802300:intron | 55.0% | |
| ! | GAAGAGGCGTGAGAGAGTAG+AGG | - | chr5_3:16521659-16521678 | Msa0802300:intron | 55.0% |
| CGTGAGAGAGTAGAGGAGGA+AGG | - | chr5_3:16521666-16521685 | Msa0802300:intron | 55.0% | |
| GTTAGGACATGGGAAGGCCA+TGG | + | chr5_3:16522150-16522169 | None:intergenic | 55.0% | |
| AGCCACGTTAGGACATGGGA+AGG | + | chr5_3:16522156-16522175 | None:intergenic | 55.0% | |
| GCTCCGCCACTGGTATTTAG+TGG | - | chr5_3:16522173-16522192 | Msa0802300:intron | 55.0% | |
| AGGTAGGAAACGCTAGCGGA+AGG | + | chr5_3:16522757-16522776 | None:intergenic | 55.0% | |
| TGGGATGGACCCAGCTCTTA+TGG | - | chr5_3:16522785-16522804 | Msa0802300:intron | 55.0% | |
| GGGATGGACCCAGCTCTTAT+GGG | - | chr5_3:16522786-16522805 | Msa0802300:intron | 55.0% | |
| CATCTCCGCCAACTGTTTCG+CGG | - | chr5_3:16522896-16522915 | Msa0802300:intron | 55.0% | |
| ATCTCCGCCAACTGTTTCGC+GGG | - | chr5_3:16522897-16522916 | Msa0802300:intron | 55.0% | |
| ! | TGTTTCGCGGGCTACTTTGC+CGG | - | chr5_3:16522909-16522928 | Msa0802300:intron | 55.0% |
| CTTGCAGGCCAAGTAGCAGT+GGG | - | chr5_3:16523988-16524007 | Msa0802300:CDS | 55.0% | |
| TTGCAGGCCAAGTAGCAGTG+GGG | - | chr5_3:16523989-16524008 | Msa0802300:CDS | 55.0% | |
| GAGGCGTGAGAGAGTAGAGG+AGG | - | chr5_3:16521662-16521681 | Msa0802300:intron | 60.0% | |
| GGCCTTCCCATGTCCTAACG+TGG | - | chr5_3:16522151-16522170 | Msa0802300:intron | 60.0% | |
| GCGGAGCCACGTTAGGACAT+GGG | + | chr5_3:16522160-16522179 | None:intergenic | 60.0% | |
| GTAGCCCGCGAAACAGTTGG+CGG | + | chr5_3:16522904-16522923 | None:intergenic | 60.0% | |
| ! | CCACTGCTACTTGGCCTGCA+AGG | + | chr5_3:16523990-16524009 | None:intergenic | 60.0% |
| CCTTGCAGGCCAAGTAGCAG+TGG | - | chr5_3:16523987-16524006 | Msa0802300:CDS | 60.0% | |
| ! | TCGGCTCCGCCAAGGTTGGT+TGG | + | chr5_3:16521235-16521254 | None:intergenic | 65.0% |
| ACCAACCTTGGCGGAGCCGA+AGG | - | chr5_3:16521235-16521254 | Msa0802300:intron | 65.0% | |
| ACCTTCGGCTCCGCCAAGGT+TGG | + | chr5_3:16521239-16521258 | None:intergenic | 65.0% | |
| GGCGGAGCCACGTTAGGACA+TGG | + | chr5_3:16522161-16522180 | None:intergenic | 65.0% | |
| TCCTAACGTGGCTCCGCCAC+TGG | - | chr5_3:16522163-16522182 | Msa0802300:intron | 65.0% | |
| ! | ACCAGTGGCGGAGCCACGTT+AGG | + | chr5_3:16522167-16522186 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 16518347 | 16524140 | 16518347 | ID=Msa0802300;Name=Msa0802300 |
| chr5_3 | mRNA | 16518347 | 16524140 | 16518347 | ID=Msa0802300-mRNA-1;Parent=Msa0802300;Name=Msa0802300-mRNA-1;_AED=0.16;_eAED=0.16;_QI=120|0.66|0.75|1|1|1|4|0|292 |
| chr5_3 | exon | 16518347 | 16518450 | 16518347 | ID=Msa0802300-mRNA-1:exon:6950;Parent=Msa0802300-mRNA-1 |
| chr5_3 | exon | 16519150 | 16519353 | 16519150 | ID=Msa0802300-mRNA-1:exon:6949;Parent=Msa0802300-mRNA-1 |
| chr5_3 | exon | 16519482 | 16519722 | 16519482 | ID=Msa0802300-mRNA-1:exon:6948;Parent=Msa0802300-mRNA-1 |
| chr5_3 | exon | 16523691 | 16524140 | 16523691 | ID=Msa0802300-mRNA-1:exon:6947;Parent=Msa0802300-mRNA-1 |
| chr5_3 | five_prime_UTR | 16524021 | 16524140 | 16524021 | ID=Msa0802300-mRNA-1:five_prime_utr;Parent=Msa0802300-mRNA-1 |
| chr5_3 | CDS | 16523691 | 16524020 | 16523691 | ID=Msa0802300-mRNA-1:cds;Parent=Msa0802300-mRNA-1 |
| chr5_3 | CDS | 16519482 | 16519722 | 16519482 | ID=Msa0802300-mRNA-1:cds;Parent=Msa0802300-mRNA-1 |
| chr5_3 | CDS | 16519150 | 16519353 | 16519150 | ID=Msa0802300-mRNA-1:cds;Parent=Msa0802300-mRNA-1 |
| chr5_3 | CDS | 16518347 | 16518450 | 16518347 | ID=Msa0802300-mRNA-1:cds;Parent=Msa0802300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
