AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1063490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1063490 MtrunA17_Chr7g0242691 71.899 516 82 5 3 457 1 514 0.0 723
Msa1063490 MtrunA17_Chr7g0242681 73.373 338 89 1 115 452 179 515 0.0 536
Msa1063490 MtrunA17_Chr7g0242681 69.136 81 25 0 1 81 6 86 2.52e-22 99.8
Msa1063490 MtrunA17_Chr4g0006971 66.372 339 114 0 115 453 168 506 2.32e-170 489
Msa1063490 MtrunA17_Chr4g0006971 70.000 50 15 0 32 81 26 75 7.35e-16 79.7
Msa1063490 MtrunA17_Chr1g0195611 47.205 483 196 6 34 458 28 509 1.44e-148 433
Msa1063490 MtrunA17_Chr5g0428831 47.314 484 195 7 34 458 28 510 4.17e-147 429
Msa1063490 MtrunA17_Chr2g0329321 39.501 481 240 9 5 438 12 488 6.33e-105 320
Msa1063490 MtrunA17_Chr1g0195641 45.026 382 151 6 35 358 29 409 5.27e-103 313
Msa1063490 MtrunA17_Chr4g0043091 36.364 495 241 9 15 437 10 502 2.54e-102 314
Msa1063490 MtrunA17_Chr4g0033191 36.756 487 217 10 33 438 43 519 4.31e-94 294
Msa1063490 MtrunA17_Chr2g0329191 43.713 334 175 4 116 438 178 509 2.96e-89 281
Msa1063490 MtrunA17_Chr2g0317841 40.816 343 189 4 114 445 173 512 1.09e-88 280
Msa1063490 MtrunA17_Chr5g0430451 38.013 463 229 8 32 438 38 498 1.47e-88 278
Msa1063490 MtrunA17_Chr4g0033331 35.510 490 238 10 32 448 38 522 2.20e-87 276
Msa1063490 MtrunA17_Chr2g0317821 40.233 343 191 4 114 445 173 512 4.44e-87 276
Msa1063490 MtrunA17_Chr2g0329201 44.012 334 174 4 116 438 176 507 8.29e-87 274
Msa1063490 MtrunA17_Chr2g0329201 47.143 70 37 0 3 72 1 70 5.44e-12 67.8
Msa1063490 MtrunA17_Chr3g0087261 43.620 337 173 6 112 436 176 507 1.46e-86 274
Msa1063490 MtrunA17_Chr3g0087261 50.000 68 26 2 11 70 7 74 6.37e-11 64.3
Msa1063490 MtrunA17_Chr4g0033271 42.515 334 179 4 116 438 180 511 3.99e-86 273
Msa1063490 MtrunA17_Chr4g0033271 50.000 68 31 1 5 72 10 74 3.53e-12 68.2
Msa1063490 MtrunA17_Chr2g0288021 34.447 479 239 10 32 438 34 509 1.26e-84 269
Msa1063490 MtrunA17_Chr4g0033201 42.388 335 178 4 116 438 181 512 2.27e-84 268
Msa1063490 MtrunA17_Chr6g0482131 42.773 339 181 4 112 439 177 513 1.06e-82 264
Msa1063490 MtrunA17_Chr6g0482131 65.854 41 14 0 32 72 35 75 3.79e-11 65.1
Msa1063490 MtrunA17_Chr3g0087201 41.566 332 184 4 114 438 16 344 1.32e-82 258
Msa1063490 MtrunA17_Chr2g0288071 39.941 338 188 4 113 438 208 542 2.81e-82 264
Msa1063490 MtrunA17_Chr6g0482951 34.025 482 234 10 32 439 42 513 5.02e-82 262
Msa1063490 MtrunA17_Chr6g0482081 42.478 339 183 3 112 439 177 514 5.43e-82 262
Msa1063490 MtrunA17_Chr4g0033311 41.667 336 183 4 115 439 183 516 1.04e-81 262
Msa1063490 MtrunA17_Chr4g0033311 65.854 41 14 0 32 72 38 78 9.71e-12 67.0
Msa1063490 MtrunA17_Chr6g0482071 41.888 339 184 4 112 439 178 514 1.21e-80 259
Msa1063490 MtrunA17_Chr3g0087271 42.814 334 174 6 115 436 180 508 1.90e-79 255
Msa1063490 MtrunA17_Chr3g0087271 51.471 68 24 2 12 70 8 75 1.00e-11 67.0
Msa1063490 MtrunA17_Chr4g0042171 41.243 354 192 7 111 451 161 511 2.04e-79 255
Msa1063490 MtrunA17_Chr6g0482941 33.817 482 235 10 32 439 42 513 2.29e-79 255
Msa1063490 MtrunA17_Chr3g0088441 40.179 336 188 4 115 439 182 515 5.81e-79 254
Msa1063490 MtrunA17_Chr3g0088441 47.297 74 31 2 1 72 10 77 1.89e-12 69.3
Msa1063490 MtrunA17_Chr4g0074551 37.391 345 201 4 113 445 190 531 1.60e-78 254
Msa1063490 MtrunA17_Chr4g0033341 41.369 336 178 7 116 438 214 543 4.53e-78 253
Msa1063490 MtrunA17_Chr4g0074561 35.294 374 224 6 78 436 140 510 6.92e-78 252
Msa1063490 MtrunA17_Chr4g0010501 40.181 331 187 5 115 438 168 494 7.61e-77 248
Msa1063490 MtrunA17_Chr4g0010501 57.895 57 24 0 16 72 7 63 5.69e-14 73.9
Msa1063490 MtrunA17_Chr4g0033321 40.179 336 188 4 115 439 177 510 2.53e-76 247
Msa1063490 MtrunA17_Chr4g0033321 62.222 45 17 0 28 72 28 72 1.41e-12 69.7
Msa1063490 MtrunA17_Chr4g0033401 39.710 345 193 5 115 448 178 518 3.84e-76 247
Msa1063490 MtrunA17_Chr4g0033401 62.222 45 17 0 28 72 29 73 9.88e-12 67.0
Msa1063490 MtrunA17_Chr4g0033261 38.824 340 169 5 112 439 182 494 3.98e-71 233
Msa1063490 MtrunA17_Chr3g0090131 37.160 331 186 5 117 437 165 483 1.81e-68 226
Msa1063490 MtrunA17_Chr3g0090131 65.854 41 14 0 32 72 20 60 3.76e-11 65.1
Msa1063490 MtrunA17_Chr4g0033231 37.015 335 172 5 116 438 186 493 1.95e-68 226
Msa1063490 MtrunA17_Chr3g0090111 37.237 333 182 6 117 437 163 480 1.02e-66 221
Msa1063490 MtrunA17_Chr3g0090111 63.043 46 17 0 27 72 13 58 2.15e-12 68.9
Msa1063490 MtrunA17_Chr7g0234091 36.446 332 193 7 115 438 212 533 6.16e-64 215
Msa1063490 MtrunA17_Chr5g0418871 50.769 195 95 1 115 308 124 318 8.88e-64 209
Msa1063490 MtrunA17_Chr7g0234131 35.758 330 195 6 115 436 212 532 2.19e-63 214
Msa1063490 MtrunA17_Chr7g0234111 36.585 328 194 6 115 436 212 531 3.65e-63 213
Msa1063490 MtrunA17_Chr8g0352881 73.810 126 23 1 185 300 35 160 6.69e-59 191
Msa1063490 MtrunA17_Chr8g0352881 92.500 40 3 0 40 79 5 44 1.53e-18 82.8
Msa1063490 MtrunA17_Chr2g0301231 35.207 338 177 6 116 438 82 392 1.73e-58 197
Msa1063490 MtrunA17_Chr4g0006111 33.430 344 181 6 116 438 209 525 1.11e-55 193
Msa1063490 MtrunA17_Chr4g0006131 32.659 346 188 5 112 438 182 501 8.47e-55 190
Msa1063490 MtrunA17_Chr7g0230651 38.406 276 155 6 110 382 113 376 7.03e-51 177
Msa1063490 MtrunA17_Chr7g0236731 38.660 194 113 1 115 308 84 271 5.35e-44 155
Msa1063490 MtrunA17_Chr7g0227561 31.641 256 113 10 35 245 48 286 8.82e-27 109
Msa1063490 MtrunA17_Chr1g0195651 51.389 72 35 0 387 458 1 72 1.41e-19 82.8
Msa1063490 MtrunA17_Chr2g0288031 57.377 61 25 1 123 183 4 63 7.31e-18 77.4
Msa1063490 MtrunA17_Chr5g0418861 47.436 78 39 2 360 436 14 90 1.23e-16 75.1
Msa1063490 MtrunA17_Chr3g0087191 61.538 52 20 0 21 72 10 61 1.19e-14 71.6
Msa1063490 MtrunA17_Chr7g0227591 50.000 54 26 1 383 436 13 65 7.48e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1063490 AT1G02850.2 47.323 467 186 6 29 437 22 486 5.24e-146 426
Msa1063490 AT1G02850.5 45.102 490 186 7 29 437 22 509 3.53e-141 415
Msa1063490 AT1G02850.4 45.010 491 186 8 29 437 22 510 1.83e-139 410
Msa1063490 AT1G02850.1 44.754 467 171 7 29 437 22 459 2.15e-131 388
Msa1063490 AT4G27830.1 41.649 485 219 7 14 436 2 484 8.34e-128 380
Msa1063490 AT1G45191.2 42.116 501 210 12 12 440 1 493 1.96e-123 369
Msa1063490 AT1G60090.2 41.865 504 224 12 12 451 1 499 1.32e-122 367
Msa1063490 AT1G45191.4 41.483 499 210 12 12 440 1 487 2.41e-122 366
Msa1063490 AT1G45191.6 41.667 504 213 12 12 440 1 498 1.27e-121 365
Msa1063490 AT4G27820.1 42.333 463 207 6 32 436 22 482 1.89e-120 361
Msa1063490 AT1G60090.1 40.856 514 222 13 12 451 1 506 6.08e-119 358
Msa1063490 AT4G27830.2 49.691 324 159 2 115 436 75 396 1.08e-113 341
Msa1063490 AT4G22100.1 49.394 330 155 4 115 437 159 483 1.69e-110 336
Msa1063490 AT4G22100.1 53.226 62 27 1 16 75 3 64 2.62e-12 69.3
Msa1063490 AT4G27820.2 50.154 325 157 2 115 436 75 397 6.79e-109 329
Msa1063490 AT4G27820.3 50.154 325 157 2 115 436 75 397 6.79e-109 329
Msa1063490 AT1G45191.1 49.258 337 156 6 115 440 178 510 8.90e-107 327
Msa1063490 AT1G45191.1 45.588 68 30 1 12 72 1 68 1.77e-11 66.6
Msa1063490 AT1G02850.3 41.975 405 152 7 29 352 22 424 1.14e-100 308
Msa1063490 AT3G62750.6 46.483 327 157 5 115 436 75 388 7.45e-99 303
Msa1063490 AT3G62750.5 46.483 327 157 5 115 436 75 388 7.45e-99 303
Msa1063490 AT3G62750.1 46.483 327 157 5 115 436 160 473 1.31e-97 302
Msa1063490 AT3G62750.1 54.237 59 25 1 20 76 8 66 2.92e-14 75.1
Msa1063490 AT3G62750.2 46.483 327 157 5 115 436 186 499 3.23e-97 302
Msa1063490 AT3G62750.2 54.237 59 25 1 20 76 34 92 3.19e-14 75.1
Msa1063490 AT3G18070.2 38.863 422 214 8 32 438 29 421 7.05e-94 290
Msa1063490 AT1G26560.1 43.284 335 174 6 116 436 174 506 2.92e-93 291
Msa1063490 AT3G62740.1 43.168 322 179 2 115 436 161 478 3.65e-91 286
Msa1063490 AT3G62740.1 50.000 58 27 1 21 76 9 66 1.65e-11 66.6
Msa1063490 AT2G44480.2 41.441 333 181 5 115 436 77 406 1.26e-85 269
Msa1063490 AT2G44480.1 41.441 333 181 5 115 436 179 508 1.25e-84 269
Msa1063490 AT2G44480.3 41.441 333 181 5 115 436 210 539 2.66e-84 269
Msa1063490 AT1G61810.5 40.533 338 185 5 114 438 75 409 3.90e-84 265
Msa1063490 AT1G61810.1 40.533 338 185 5 114 438 175 509 3.76e-83 266
Msa1063490 AT1G61820.3 39.589 341 190 5 111 438 30 367 6.82e-83 260
Msa1063490 AT3G18080.1 41.003 339 176 5 115 438 180 509 1.59e-82 264
Msa1063490 AT1G61820.1 39.589 341 190 5 111 438 169 506 3.46e-81 260
Msa1063490 AT1G45191.5 39.578 379 155 10 12 322 1 373 2.48e-80 255
Msa1063490 AT1G45191.3 40.270 370 147 10 12 313 1 364 3.90e-80 254
Msa1063490 AT1G60270.1 41.193 352 141 8 21 308 6 355 2.45e-78 249
Msa1063490 AT3G18070.1 40.653 337 176 6 117 438 171 498 6.33e-78 251
Msa1063490 AT3G18070.3 41.088 331 171 6 123 438 171 492 7.23e-78 251
Msa1063490 AT1G61810.3 40.248 323 177 5 114 423 175 494 2.29e-76 248
Msa1063490 AT4G21760.2 36.667 330 199 4 114 436 195 521 4.77e-76 248
Msa1063490 AT5G26000.1 39.706 340 191 4 116 443 181 518 9.34e-75 244
Msa1063490 AT5G16580.1 46.975 281 136 6 117 392 27 299 1.50e-74 236
Msa1063490 AT2G25630.1 33.806 494 245 15 12 439 9 486 1.23e-73 240
Msa1063490 AT4G21760.1 37.346 324 195 5 114 436 195 511 1.55e-73 241
Msa1063490 AT3G18070.7 40.063 317 166 6 137 438 2 309 1.45e-72 231
Msa1063490 AT2G44450.2 37.126 334 200 4 116 442 25 355 5.04e-72 231
Msa1063490 AT3G60140.1 37.989 358 190 8 115 450 169 516 1.08e-70 234
Msa1063490 AT5G44640.1 38.253 332 194 5 116 439 176 504 2.23e-70 232
Msa1063490 AT5G44640.1 53.731 67 29 1 8 72 4 70 4.11e-12 68.6
Msa1063490 AT2G44450.1 37.126 334 200 4 116 442 176 506 4.07e-70 231
Msa1063490 AT2G44450.1 63.636 44 16 0 29 72 27 70 3.57e-11 65.5
Msa1063490 AT5G24550.1 38.244 353 199 7 116 451 176 526 4.11e-70 232
Msa1063490 AT3G62750.4 44.364 275 135 5 115 384 186 447 4.74e-70 229
Msa1063490 AT3G62750.4 54.237 59 25 1 20 76 34 92 2.83e-14 75.1
Msa1063490 AT5G54570.2 38.988 336 187 7 116 436 76 408 7.42e-70 228
Msa1063490 AT2G44480.5 38.689 305 173 5 143 436 1 302 1.71e-69 224
Msa1063490 AT5G54570.1 38.988 336 187 7 116 436 173 505 7.47e-69 229
Msa1063490 AT1G51470.1 38.643 339 188 7 111 438 182 511 8.99e-69 228
Msa1063490 AT1G47600.2 38.166 338 190 7 111 438 182 510 4.18e-68 226
Msa1063490 AT3G18070.5 37.651 332 169 6 32 352 29 333 4.23e-68 221
Msa1063490 AT1G47600.1 38.053 339 190 7 111 438 182 511 5.69e-68 226
Msa1063490 AT5G25980.2 39.104 335 187 7 116 437 193 523 9.07e-68 226
Msa1063490 AT2G44470.3 35.775 355 209 8 115 455 172 521 3.42e-67 226
Msa1063490 AT5G42260.1 37.538 325 192 5 116 432 176 497 3.49e-67 223
Msa1063490 AT5G42260.1 70.000 40 12 0 33 72 31 70 6.01e-12 68.2
Msa1063490 AT3G62740.2 41.573 267 152 2 115 381 161 423 1.08e-66 220
Msa1063490 AT3G62740.2 50.000 58 27 1 21 76 9 66 1.48e-11 66.6
Msa1063490 AT1G60270.2 52.041 196 90 3 115 308 75 268 2.73e-66 214
Msa1063490 AT2G32860.2 37.537 341 193 8 115 439 238 574 3.05e-66 224
Msa1063490 AT2G44490.1 36.827 353 200 8 116 450 159 506 3.03e-65 219
Msa1063490 AT3G60120.1 37.168 339 192 8 116 438 158 491 3.72e-65 219
Msa1063490 AT5G24540.1 40.173 346 182 9 116 441 176 516 9.41e-65 218
Msa1063490 AT3G60130.2 37.273 330 196 5 116 437 123 449 1.39e-64 215
Msa1063490 AT3G60130.3 37.231 325 192 5 116 437 123 438 1.52e-64 215
Msa1063490 AT2G32860.1 37.427 342 191 9 115 439 238 573 6.01e-64 218
Msa1063490 AT3G60130.1 37.273 330 196 5 116 437 175 501 8.99e-64 214
Msa1063490 AT3G60130.1 71.795 39 11 0 33 71 30 68 1.79e-11 66.6
Msa1063490 AT5G36890.2 35.714 364 202 7 90 437 133 480 1.19e-63 214
Msa1063490 AT5G36890.1 35.714 364 202 7 90 437 133 480 1.48e-63 213
Msa1063490 AT3G09260.1 37.758 339 192 8 115 438 178 512 2.56e-63 214
Msa1063490 AT5G28510.1 38.244 353 196 9 115 448 182 531 2.74e-63 214
Msa1063490 AT1G75940.1 37.719 342 189 10 115 436 180 517 4.57e-62 211
Msa1063490 AT1G66280.1 38.710 341 187 10 112 436 176 510 1.79e-61 209
Msa1063490 AT3G21370.1 36.919 344 187 9 116 437 177 512 7.34e-61 207
Msa1063490 AT5G26000.2 40.288 278 153 3 116 382 181 456 2.58e-60 204
Msa1063490 AT1G52400.3 35.933 359 194 10 115 449 182 528 5.32e-60 205
Msa1063490 AT1G52400.1 35.933 359 194 10 115 449 182 528 5.32e-60 205
Msa1063490 AT1G66270.1 37.609 343 192 9 112 438 176 512 1.61e-59 204
Msa1063490 AT1G66270.2 37.609 343 192 9 112 438 174 510 1.77e-59 203
Msa1063490 AT2G44460.2 37.719 342 190 8 115 439 26 361 2.91e-58 198
Msa1063490 AT1G61810.4 41.129 248 138 3 114 354 175 421 6.07e-58 197
Msa1063490 AT3G03640.1 34.551 356 210 10 115 453 178 527 1.82e-57 198
Msa1063490 AT2G44460.1 37.719 342 190 8 115 439 172 507 4.10e-57 198
Msa1063490 AT3G62750.7 46.766 201 91 3 115 310 160 349 5.02e-57 193
Msa1063490 AT3G62750.7 54.237 59 25 1 20 76 8 66 1.34e-14 75.5
Msa1063490 AT3G62750.8 46.766 201 91 3 115 310 160 349 5.02e-57 193
Msa1063490 AT3G62750.8 54.237 59 25 1 20 76 8 66 1.34e-14 75.5
Msa1063490 AT3G62750.3 46.569 204 93 3 115 313 186 378 1.03e-56 194
Msa1063490 AT3G62750.3 54.237 59 25 1 20 76 34 92 1.76e-14 75.5
Msa1063490 AT2G44480.4 49.438 178 85 3 115 289 210 385 1.85e-53 184
Msa1063490 AT5G25980.3 38.351 279 156 6 116 382 193 467 1.91e-52 183
Msa1063490 AT5G25980.1 38.351 279 156 6 116 382 193 467 1.91e-52 183
Msa1063490 AT3G60140.2 39.759 249 138 4 115 354 169 414 2.66e-52 183
Msa1063490 AT5G54570.3 37.367 281 160 5 116 382 173 451 1.26e-51 181
Msa1063490 AT3G18070.4 44.271 192 106 1 117 308 171 361 5.00e-51 177
Msa1063490 AT5G48375.1 37.801 291 131 4 116 401 167 412 2.46e-50 177
Msa1063490 AT2G44470.1 34.643 280 169 5 115 381 172 450 1.84e-48 172
Msa1063490 AT3G18070.6 38.767 227 121 4 137 352 2 221 1.03e-46 161
Msa1063490 AT5G24540.2 38.516 283 153 6 116 381 176 454 3.46e-46 166
Msa1063490 AT2G44470.2 41.899 179 103 1 115 292 172 350 1.13e-44 161
Msa1063490 AT1G52400.2 34.717 265 146 7 115 363 182 435 5.02e-39 147
Msa1063490 AT1G61810.2 49.600 125 62 1 114 238 175 298 1.09e-35 134
Msa1063490 AT1G51490.1 41.935 186 95 4 113 295 158 333 2.59e-35 135

Find 103 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATACTCATGATTGTGCTTA+TGG 0.179439 7_2:+55404828 None:intergenic
CATGTATAATTTCATCTCTT+TGG 0.196414 7_2:+55404894 None:intergenic
CCAATTTACATACATGAAAA+TGG 0.227583 7_2:-55401891 Msa1063490:intron
GGGTTTAATCTTCTTACTTT+TGG 0.229565 7_2:-55402665 Msa1063490:CDS
TAGCACCTCTTGAAAATTCT+TGG 0.231909 7_2:+55401944 None:intergenic
CATTACTTGAAGAATGATTA+TGG 0.238646 7_2:-55401921 Msa1063490:CDS
TTCTTCAACTGAGCCATATT+TGG 0.244204 7_2:-55402891 Msa1063490:CDS
TCCTCCATGTTCAGGCTTGC+AGG 0.244360 7_2:+55402239 None:intergenic
GGTATGCAACATGGATTTAT+AGG 0.250484 7_2:-55402686 Msa1063490:CDS
GCAATGTTTGGCTATGATAT+TGG 0.252000 7_2:-55402971 Msa1063490:CDS
ATGCTTAGTAATATCAAGTT+TGG 0.259089 7_2:-55401357 Msa1063490:three_prime_UTR
AAGAGCTCAATTGACTTCTT+AGG 0.273589 7_2:-55402299 Msa1063490:CDS
TGAAAATTCTTGGTTGTAAT+CGG 0.280116 7_2:+55401954 None:intergenic
ATATGATGAGCTGCCAAATA+TGG 0.293208 7_2:+55402878 None:intergenic
GTCAATATTTATGCAATGTT+TGG 0.295176 7_2:-55402983 Msa1063490:CDS
GCTACCATGTAAATGAATTA+AGG 0.305146 7_2:-55401313 Msa1063490:three_prime_UTR
AATCTTACTATATTTCATAT+TGG 0.317836 7_2:+55401274 None:intergenic
TGCTTAGTAATATCAAGTTT+GGG 0.324519 7_2:-55401356 Msa1063490:three_prime_UTR
GCAATTCATCCTTGAATGAT+TGG 0.325758 7_2:-55401750 Msa1063490:CDS
GGATAATCACCAAATGTTAA+AGG 0.331229 7_2:+55402389 None:intergenic
AGGAGTGGATCGAATATAAA+AGG 0.338876 7_2:-55401593 Msa1063490:CDS
TTCCCTTCTGACTTTGTGTT+TGG 0.340012 7_2:-55404703 Msa1063490:CDS
TTAGGTTGTCTCTTCAAGTT+TGG 0.344000 7_2:+55401482 None:intergenic
AGTGGATATGAAGAAAGTTT+TGG 0.348235 7_2:-55401530 Msa1063490:CDS
GGACCATAGCTAATGAAATA+AGG 0.360367 7_2:-55401696 Msa1063490:intron
ACCTTTGCCCATGGTGGAAA+TGG 0.365475 7_2:-55404297 Msa1063490:intron
GATGTGTGCTTCAAAGAATT+TGG 0.367875 7_2:-55403040 Msa1063490:CDS
CATAAGCACAATCATGAGTA+TGG 0.373354 7_2:-55404827 Msa1063490:exon
AACCTAAGCTCTCTGCAAAA+TGG 0.383756 7_2:-55401466 Msa1063490:CDS
TATGGACTCAAAGATTACTA+TGG 0.386973 7_2:-55401417 Msa1063490:CDS
CCTTGAGCAGTTAGCTAGAA+AGG 0.388723 7_2:+55402919 None:intergenic
GTATGCAACATGGATTTATA+GGG 0.392536 7_2:-55402685 Msa1063490:CDS
AAGAGCTTACTTTACATGTA+AGG 0.393824 7_2:+55404942 None:intergenic
CATCCTTGAATGATTGGTCT+AGG 0.400119 7_2:-55401744 Msa1063490:CDS
AATCTCTATCCTCCATGTTC+AGG 0.412420 7_2:+55402231 None:intergenic
ATGGCAGGAAACCAAGCATA+TGG 0.425229 7_2:-55404323 Msa1063490:CDS
TAGAGATTACATGCAAGATA+TGG 0.438663 7_2:-55402216 Msa1063490:CDS
AACTATAAGCACTAGGGAAA+AGG 0.440558 7_2:+55404740 None:intergenic
CACCCTAGACCAATCATTCA+AGG 0.449983 7_2:+55401741 None:intergenic
CTTTCATATCTATGTAGTAT+AGG 0.451734 7_2:+55401507 None:intergenic
CATTATAGCAATGATTTACA+TGG 0.453286 7_2:+55401377 None:intergenic
ACCACCCCATCATGAAGTCT+TGG 0.455704 7_2:+55402591 None:intergenic
GTACCTTATTTCATTAGCTA+TGG 0.466073 7_2:+55401693 None:intergenic
ATTGTACAGGAAGAAATATA+AGG 0.468830 7_2:-55402828 Msa1063490:intron
CCACCCCATCATGAAGTCTT+GGG 0.477044 7_2:+55402592 None:intergenic
CCTTTCTAGCTAACTGCTCA+AGG 0.483493 7_2:-55402919 Msa1063490:CDS
ACTTCCTTCCTTCACAGTAA+AGG 0.485769 7_2:-55402336 Msa1063490:CDS
TTGGTGATCGAGTTAAGTAC+TGG 0.493905 7_2:-55403021 Msa1063490:CDS
TAATGGTATTGGAAGTTTGA+AGG 0.498314 7_2:-55404360 Msa1063490:intron
AAGATATAATTGCCACTCAA+AGG 0.502064 7_2:-55402616 Msa1063490:CDS
GACAATACCATTTCCACCAT+GGG 0.514101 7_2:+55404290 None:intergenic
ATAGTAATCTTTGAGTCCAT+AGG 0.515359 7_2:+55401419 None:intergenic
ATCCTTGAATGATTGGTCTA+GGG 0.527356 7_2:-55401743 Msa1063490:CDS
CAATCCTGCAAGCCTGAACA+TGG 0.535121 7_2:-55402243 Msa1063490:CDS
TGGTCCCAATGTATTTATGC+AGG 0.535625 7_2:+55401713 None:intergenic
ACTGTGAAGGAAGGAAGTCT+TGG 0.536319 7_2:+55402341 None:intergenic
TTGTTCAAACTATAAGCACT+AGG 0.539164 7_2:+55404733 None:intergenic
AGATATAATTGCCACTCAAA+GGG 0.540838 7_2:-55402615 Msa1063490:CDS
AGTACCTGCATAAATACATT+GGG 0.542317 7_2:-55401717 Msa1063490:CDS
ATTTGATTCCTTTACTGTGA+AGG 0.542853 7_2:+55402328 None:intergenic
ACATCCTTAATTCATTTACA+TGG 0.543442 7_2:+55401309 None:intergenic
CTTCAGCTGCAAGATTGTAC+AGG 0.549650 7_2:-55402841 Msa1063490:CDS
GTGCAGCAAATGAAGATGGC+AGG 0.555499 7_2:-55404338 Msa1063490:CDS
GCAAAGGTATCCCATATGCT+TGG 0.555595 7_2:+55404312 None:intergenic
TGGCAGGAAACCAAGCATAT+GGG 0.560662 7_2:-55404322 Msa1063490:CDS
CGATGGATATCACAAATACA+AGG 0.562182 7_2:-55404118 Msa1063490:intron
AGGGCCCAAGACTTCATGAT+GGG 0.562999 7_2:-55402596 Msa1063490:CDS
CTTTCTAGCTAACTGCTCAA+GGG 0.564017 7_2:-55402918 Msa1063490:CDS
AAGTACCTGCATAAATACAT+TGG 0.567174 7_2:-55401718 Msa1063490:CDS
GAGCAGTTAGCTAGAAAGGA+AGG 0.568345 7_2:+55402923 None:intergenic
GACGGAGATATTGCATGCGA+TGG 0.570077 7_2:-55404135 Msa1063490:CDS
GTACTGGACCACGGTGAATG+AGG 0.570570 7_2:-55403005 Msa1063490:CDS
GATTCCTTTACTGTGAAGGA+AGG 0.570998 7_2:+55402332 None:intergenic
GAAGTCTTGGGCCCTTTGAG+TGG 0.571906 7_2:+55402604 None:intergenic
GAAGGTGCAGCAAATGAAGA+TGG 0.573414 7_2:-55404342 Msa1063490:CDS
ACCATTTCCACCATGGGCAA+AGG 0.574344 7_2:+55404296 None:intergenic
ACACCAAACACAAAGTCAGA+AGG 0.580548 7_2:+55404700 None:intergenic
TATTTCAAGCACATCCATGA+AGG 0.593077 7_2:+55401556 None:intergenic
GCGAATATGTACAAGGGTGA+CGG 0.593362 7_2:-55404153 Msa1063490:CDS
GGACAATACCATTTCCACCA+TGG 0.595529 7_2:+55404289 None:intergenic
TGTTCAAACTATAAGCACTA+GGG 0.596146 7_2:+55404734 None:intergenic
CACCAAACACAAAGTCAGAA+GGG 0.600461 7_2:+55404701 None:intergenic
AAGGGCCCAAGACTTCATGA+TGG 0.602550 7_2:-55402597 Msa1063490:CDS
TTTCTAGCTAACTGCTCAAG+GGG 0.603830 7_2:-55402917 Msa1063490:CDS
CATCATATAATAATAGGGCA+GGG 0.604500 7_2:+55401229 None:intergenic
CCCAAGACTTCATGATGGGG+TGG 0.613603 7_2:-55402592 Msa1063490:intron
AAAGTGCAGGGTATGCAACA+TGG 0.615675 7_2:-55402695 Msa1063490:intron
GTTTGGCTATGATATTGGAA+TGG 0.622668 7_2:-55402966 Msa1063490:CDS
TGGGATACCTTTGCCCATGG+TGG 0.626698 7_2:-55404303 Msa1063490:CDS
GCTTAGTAATATCAAGTTTG+GGG 0.628013 7_2:-55401355 Msa1063490:three_prime_UTR
TTACATGCAAGATATGGCAG+TGG 0.628249 7_2:-55402210 Msa1063490:CDS
TTGGAATGGCACCGCCTCAG+AGG 0.629344 7_2:-55402952 Msa1063490:CDS
ATATGGGATACCTTTGCCCA+TGG 0.631693 7_2:-55404306 Msa1063490:CDS
ATGGGTAAGAAATCAACACT+TGG 0.633373 7_2:-55404977 None:intergenic
AAATGATACATCAATAGATG+AGG 0.637241 7_2:-55402065 Msa1063490:intron
TCTTCACTAGTATTTGTCAG+TGG 0.645429 7_2:+55402635 None:intergenic
GAAGGAGAACACCTCTGAGG+CGG 0.652236 7_2:+55402941 None:intergenic
GGGCCCAAGACTTCATGATG+GGG 0.691282 7_2:-55402595 Msa1063490:CDS
TCCTGCAAGCCTGAACATGG+AGG 0.718680 7_2:-55402240 Msa1063490:CDS
AAGGAAGGAGAACACCTCTG+AGG 0.721271 7_2:+55402938 None:intergenic
TCGAGTTAAGTACTGGACCA+CGG 0.736442 7_2:-55403014 Msa1063490:CDS
GATGTGCTTGAAATACTGAG+TGG 0.749862 7_2:-55401548 Msa1063490:CDS
AATATTGACCTCATTCACCG+TGG 0.768238 7_2:+55402997 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCATTATTAATTAAAATAC+AGG - chr7_2:55401983-55402002 Msa1063490:intron 10.0%
!! TTGTAATTTATTTATGTATT+TGG - chr7_2:55404206-55404225 Msa1063490:CDS 10.0%
!!! ATTTTCAAATATAATGTATA+AGG - chr7_2:55404556-55404575 Msa1063490:intron 10.0%
!! ATATATGTTTGTTTACAATA+AGG + chr7_2:55401752-55401771 None:intergenic 15.0%
!! AAATAAAGTATATGTTAGTT+TGG + chr7_2:55401951-55401970 None:intergenic 15.0%
!! AAAAAATAGACTTAAAGTAT+GGG + chr7_2:55402845-55402864 None:intergenic 15.0%
!! AAAAAAATAGACTTAAAGTA+TGG + chr7_2:55402846-55402865 None:intergenic 15.0%
!!! ATACTTTAAGTCTATTTTTT+TGG - chr7_2:55402845-55402864 Msa1063490:CDS 15.0%
!!! TACTTTAAGTCTATTTTTTT+GGG - chr7_2:55402846-55402865 Msa1063490:CDS 15.0%
!! AAATAAACAAACTTAAGAAA+TGG - chr7_2:55403090-55403109 Msa1063490:intron 15.0%
!! ATGTATTACAAAATAAATCT+TGG + chr7_2:55403728-55403747 None:intergenic 15.0%
!! ATACATAAATAAATTACAAG+AGG + chr7_2:55404205-55404224 None:intergenic 15.0%
!!! ATATAAAAGGTTATTTTGTA+TGG - chr7_2:55404636-55404655 Msa1063490:intron 15.0%
!! AATCTTACTATATTTCATAT+TGG + chr7_2:55404945-55404964 None:intergenic 15.0%
!! TACAATGTGTTATATCATTT+GGG + chr7_2:55401639-55401658 None:intergenic 20.0%
!! TGCATCTTATACATATAAAT+TGG - chr7_2:55402175-55402194 Msa1063490:intron 20.0%
!! TCTAATATATTTCATCTTCT+AGG - chr7_2:55402714-55402733 Msa1063490:intron 20.0%
!! TATTTCAATCTATGACAATA+TGG + chr7_2:55403064-55403083 None:intergenic 20.0%
!!! TTAAGAAATGGTTTTTATTG+TGG - chr7_2:55403102-55403121 Msa1063490:intron 20.0%
!! AAATTAGATTGTAAGTAAAG+TGG + chr7_2:55403435-55403454 None:intergenic 20.0%
!! ATTTCTAAACTTTGCATTAT+GGG - chr7_2:55403694-55403713 Msa1063490:intron 20.0%
!!! GTTTTAAATCCTTTAACATT+TGG - chr7_2:55403818-55403837 Msa1063490:intron 20.0%
!!! ACATTCTTTTTCATTATATC+AGG + chr7_2:55403851-55403870 None:intergenic 20.0%
!! GATATAATGAAAAAGAATGT+TGG - chr7_2:55403851-55403870 Msa1063490:intron 20.0%
!!! AATATTGTGAAGATTTTGAA+AGG + chr7_2:55404392-55404411 None:intergenic 20.0%
! CATGTATAATTTCATCTCTT+TGG + chr7_2:55401325-55401344 None:intergenic 25.0%
!! AAATGCAAAAGCATAACATT+AGG + chr7_2:55401592-55401611 None:intergenic 25.0%
! GTACAATGTGTTATATCATT+TGG + chr7_2:55401640-55401659 None:intergenic 25.0%
!! TTTTCAGACTATAATAAGTC+TGG - chr7_2:55401697-55401716 Msa1063490:CDS 25.0%
! CATCATACTTATGACTATAA+TGG - chr7_2:55401839-55401858 Msa1063490:intron 25.0%
! ACTTATGACTATAATGGTAT+TGG - chr7_2:55401845-55401864 Msa1063490:intron 25.0%
! ATAACAAAAGAATGTATGTG+TGG - chr7_2:55402146-55402165 Msa1063490:intron 25.0%
!! ATTTGCTTAGTGCAATTTTT+AGG + chr7_2:55402221-55402240 None:intergenic 25.0%
! CCATGATATTGAAAATCTAT+AGG + chr7_2:55402303-55402322 None:intergenic 25.0%
!! CCTATAGATTTTCAATATCA+TGG - chr7_2:55402300-55402319 Msa1063490:CDS 25.0%
! TTGTAATATTGTAGTCCTTT+AGG + chr7_2:55402612-55402631 None:intergenic 25.0%
! ACATGTTACATTACATCATT+GGG - chr7_2:55402746-55402765 Msa1063490:intron 25.0%
! AGAATCTAAGTTTGATTCTT+AGG + chr7_2:55402961-55402980 None:intergenic 25.0%
! GTCAATATTTATGCAATGTT+TGG - chr7_2:55403233-55403252 Msa1063490:intron 25.0%
! ATTGTACAGGAAGAAATATA+AGG - chr7_2:55403388-55403407 Msa1063490:intron 25.0%
! CATTTCTAAACTTTGCATTA+TGG - chr7_2:55403693-55403712 Msa1063490:intron 25.0%
!!! TGTTTATCATTTGTTATTGC+AGG - chr7_2:55403795-55403814 Msa1063490:intron 25.0%
!!! GTTTATCATTTGTTATTGCA+GGG - chr7_2:55403796-55403815 Msa1063490:intron 25.0%
! TTGTTTCAGTTTCTTCAAAA+TGG + chr7_2:55404095-55404114 None:intergenic 25.0%
! AAATGATACATCAATAGATG+AGG - chr7_2:55404151-55404170 Msa1063490:CDS 25.0%
! TGAAAATTCTTGGTTGTAAT+CGG + chr7_2:55404265-55404284 None:intergenic 25.0%
! CATTACTTGAAGAATGATTA+TGG - chr7_2:55404295-55404314 Msa1063490:intron 25.0%
!! CCATTTTCATGTATGTAAAT+TGG + chr7_2:55404328-55404347 None:intergenic 25.0%
! CCAATTTACATACATGAAAA+TGG - chr7_2:55404325-55404344 Msa1063490:CDS 25.0%
!! TATGACAATTTTCCAACATA+TGG - chr7_2:55404348-55404367 Msa1063490:CDS 25.0%
!!! TTTATTTTTGACACATCGAA+AGG - chr7_2:55404603-55404622 Msa1063490:intron 25.0%
! CTTTCATATCTATGTAGTAT+AGG + chr7_2:55404712-55404731 None:intergenic 25.0%
! CATTATAGCAATGATTTACA+TGG + chr7_2:55404842-55404861 None:intergenic 25.0%
! ATGCTTAGTAATATCAAGTT+TGG - chr7_2:55404859-55404878 Msa1063490:five_prime_UTR 25.0%
! TGCTTAGTAATATCAAGTTT+GGG - chr7_2:55404860-55404879 Msa1063490:five_prime_UTR 25.0%
! ACATCCTTAATTCATTTACA+TGG + chr7_2:55404910-55404929 None:intergenic 25.0%
AAGAGCTTACTTTACATGTA+AGG + chr7_2:55401277-55401296 None:intergenic 30.0%
TGTTCAAACTATAAGCACTA+GGG + chr7_2:55401485-55401504 None:intergenic 30.0%
TTGTTCAAACTATAAGCACT+AGG + chr7_2:55401486-55401505 None:intergenic 30.0%
! TAATGGTATTGGAAGTTTGA+AGG - chr7_2:55401856-55401875 Msa1063490:intron 30.0%
! ATTTTCAGCGAATATGTACA+AGG - chr7_2:55402056-55402075 Msa1063490:intron 30.0%
! TTTTCAGCGAATATGTACAA+GGG - chr7_2:55402057-55402076 Msa1063490:intron 30.0%
GTAAATACATAGGGATAAGA+TGG + chr7_2:55402566-55402585 None:intergenic 30.0%
TACCATCTGGTAAATACATA+GGG + chr7_2:55402575-55402594 None:intergenic 30.0%
TTACCATCTGGTAAATACAT+AGG + chr7_2:55402576-55402595 None:intergenic 30.0%
ATGTATTTACCAGATGGTAA+AGG - chr7_2:55402576-55402595 Msa1063490:intron 30.0%
ATAAATGAACTGATAAGCCA+CGG - chr7_2:55402639-55402658 Msa1063490:CDS 30.0%
CACATGTTACATTACATCAT+TGG - chr7_2:55402745-55402764 Msa1063490:intron 30.0%
GTTAGCAAAAAAATCGTGTA+TGG - chr7_2:55402807-55402826 Msa1063490:intron 30.0%
! CTTAAAGTATGGGAAAGTTT+TGG + chr7_2:55402835-55402854 None:intergenic 30.0%
ATCTAAGTTTGATTCTTAGG+TGG + chr7_2:55402958-55402977 None:intergenic 30.0%
! ACCATTTAAGACCAATTTCT+TGG - chr7_2:55403013-55403032 Msa1063490:CDS 30.0%
!! ACCAAGAAATTGGTCTTAAA+TGG + chr7_2:55403017-55403036 None:intergenic 30.0%
ACTTGAAGTAACCAAGAAAT+TGG + chr7_2:55403027-55403046 None:intergenic 30.0%
ATCTATATATGTATCCTTGC+AGG - chr7_2:55403132-55403151 Msa1063490:intron 30.0%
!! AAACAATCTTTCTAAAGTGC+AGG - chr7_2:55403508-55403527 Msa1063490:intron 30.0%
!! AACAATCTTTCTAAAGTGCA+GGG - chr7_2:55403509-55403528 Msa1063490:intron 30.0%
GTATGCAACATGGATTTATA+GGG - chr7_2:55403531-55403550 Msa1063490:intron 30.0%
! GGGTTTAATCTTCTTACTTT+TGG - chr7_2:55403551-55403570 Msa1063490:intron 30.0%
AAGATATAATTGCCACTCAA+AGG - chr7_2:55403600-55403619 Msa1063490:intron 30.0%
AGATATAATTGCCACTCAAA+GGG - chr7_2:55403601-55403620 Msa1063490:intron 30.0%
GGATAATCACCAAATGTTAA+AGG + chr7_2:55403830-55403849 None:intergenic 30.0%
ATTTGATTCCTTTACTGTGA+AGG + chr7_2:55403891-55403910 None:intergenic 30.0%
TAGAGATTACATGCAAGATA+TGG - chr7_2:55404000-55404019 Msa1063490:intron 30.0%
TTCTTCAAAATGGAGTAAAG+TGG + chr7_2:55404085-55404104 None:intergenic 30.0%
!! TACAACCAAGAATTTTCAAG+AGG - chr7_2:55404267-55404286 Msa1063490:intron 30.0%
!! GAAGATTTTGAAAGGAAACA+TGG + chr7_2:55404384-55404403 None:intergenic 30.0%
AAGTACCTGCATAAATACAT+TGG - chr7_2:55404498-55404517 Msa1063490:intron 30.0%
AGTACCTGCATAAATACATT+GGG - chr7_2:55404499-55404518 Msa1063490:intron 30.0%
! GTACCTTATTTCATTAGCTA+TGG + chr7_2:55404526-55404545 None:intergenic 30.0%
!! TTATTTTGTATGGTCCTTCA+TGG - chr7_2:55404646-55404665 Msa1063490:intron 30.0%
! AGTGGATATGAAGAAAGTTT+TGG - chr7_2:55404686-55404705 Msa1063490:CDS 30.0%
!! GGTACTCAAATTTTCTGAAA+AGG - chr7_2:55404771-55404790 Msa1063490:CDS 30.0%
ATAGTAATCTTTGAGTCCAT+AGG + chr7_2:55404800-55404819 None:intergenic 30.0%
TATGGACTCAAAGATTACTA+TGG - chr7_2:55404799-55404818 Msa1063490:CDS 30.0%
GCTTAGTAATATCAAGTTTG+GGG - chr7_2:55404861-55404880 Msa1063490:five_prime_UTR 30.0%
GCTACCATGTAAATGAATTA+AGG - chr7_2:55404903-55404922 Msa1063490:five_prime_UTR 30.0%
CATACTCATGATTGTGCTTA+TGG + chr7_2:55401391-55401410 None:intergenic 35.0%
CATAAGCACAATCATGAGTA+TGG - chr7_2:55401389-55401408 Msa1063490:CDS 35.0%
AACTATAAGCACTAGGGAAA+AGG + chr7_2:55401479-55401498 None:intergenic 35.0%
AGAAGAGAGAAGAACAAACT+TGG + chr7_2:55401557-55401576 None:intergenic 35.0%
CGATGGATATCACAAATACA+AGG - chr7_2:55402098-55402117 Msa1063490:intron 35.0%
! CATTTTACATCTGTCTTCGA+GGG - chr7_2:55402362-55402381 Msa1063490:CDS 35.0%
TGTATTCGACTCACTTGATT+TGG - chr7_2:55402463-55402482 Msa1063490:intron 35.0%
!! CTTGATTTGGTTTAAGTGCA+TGG - chr7_2:55402476-55402495 Msa1063490:intron 35.0%
ATCCCTATGTATTTACCAGA+TGG - chr7_2:55402570-55402589 Msa1063490:intron 35.0%
!! TGTAGTCCTTTAGGATTGAT+GGG + chr7_2:55402603-55402622 None:intergenic 35.0%
!! TTGTAGTCCTTTAGGATTGA+TGG + chr7_2:55402604-55402623 None:intergenic 35.0%
AATATAGTCTTCACAAACCG+TGG + chr7_2:55402659-55402678 None:intergenic 35.0%
GATGTAATGTAACATGTGCT+TGG + chr7_2:55402743-55402762 None:intergenic 35.0%
TATTCATCCTCAAGTGATTG+TGG + chr7_2:55402777-55402796 None:intergenic 35.0%
TCACTTGAGGATGAATATGA+AGG - chr7_2:55402780-55402799 Msa1063490:intron 35.0%
TTGAGGATGAATATGAAGGA+TGG - chr7_2:55402784-55402803 Msa1063490:intron 35.0%
TGAGGATGAATATGAAGGAT+GGG - chr7_2:55402785-55402804 Msa1063490:intron 35.0%
TTCTTAGGTGGAACAATTCT+TGG + chr7_2:55402946-55402965 None:intergenic 35.0%
GATGTGTGCTTCAAAGAATT+TGG - chr7_2:55403176-55403195 Msa1063490:intron 35.0%
GCAATGTTTGGCTATGATAT+TGG - chr7_2:55403245-55403264 Msa1063490:intron 35.0%
GTTTGGCTATGATATTGGAA+TGG - chr7_2:55403250-55403269 Msa1063490:intron 35.0%
TTCTTCAACTGAGCCATATT+TGG - chr7_2:55403325-55403344 Msa1063490:intron 35.0%
ATATGATGAGCTGCCAAATA+TGG + chr7_2:55403341-55403360 None:intergenic 35.0%
GGTATGCAACATGGATTTAT+AGG - chr7_2:55403530-55403549 Msa1063490:intron 35.0%
TCTTCACTAGTATTTGTCAG+TGG + chr7_2:55403584-55403603 None:intergenic 35.0%
TCTAAACTTTGCATTATGGG+TGG - chr7_2:55403697-55403716 Msa1063490:intron 35.0%
! AAGAGCTCAATTGACTTCTT+AGG - chr7_2:55403917-55403936 Msa1063490:intron 35.0%
GGTTTAACCAATTGATCATC+TGG - chr7_2:55404227-55404246 Msa1063490:intron 35.0%
TAACCAATTGATCATCTGGT+TGG - chr7_2:55404231-55404250 Msa1063490:intron 35.0%
AAACCAACCAGATGATCAAT+TGG + chr7_2:55404237-55404256 None:intergenic 35.0%
TAGCACCTCTTGAAAATTCT+TGG + chr7_2:55404275-55404294 None:intergenic 35.0%
GCAATTCATCCTTGAATGAT+TGG - chr7_2:55404466-55404485 Msa1063490:intron 35.0%
!! ATCCTTGAATGATTGGTCTA+GGG - chr7_2:55404473-55404492 Msa1063490:intron 35.0%
GGACCATAGCTAATGAAATA+AGG - chr7_2:55404520-55404539 Msa1063490:intron 35.0%
AGGAGTGGATCGAATATAAA+AGG - chr7_2:55404623-55404642 Msa1063490:intron 35.0%
TATTTCAAGCACATCCATGA+AGG + chr7_2:55404663-55404682 None:intergenic 35.0%
! TTAGGTTGTCTCTTCAAGTT+TGG + chr7_2:55404737-55404756 None:intergenic 35.0%
!! TTTTCTGAAAAGGAAGCCTA+TGG - chr7_2:55404781-55404800 Msa1063490:CDS 35.0%
TTCCCTTCTGACTTTGTGTT+TGG - chr7_2:55401513-55401532 Msa1063490:CDS 40.0%
CACCAAACACAAAGTCAGAA+GGG + chr7_2:55401518-55401537 None:intergenic 40.0%
ACACCAAACACAAAGTCAGA+AGG + chr7_2:55401519-55401538 None:intergenic 40.0%
GACAATACCATTTCCACCAT+GGG + chr7_2:55401929-55401948 None:intergenic 40.0%
GTATCATTTCAGACCTTACC+TGG + chr7_2:55402338-55402357 None:intergenic 40.0%
CCTCGAAGACAGATGTAAAA+TGG + chr7_2:55402364-55402383 None:intergenic 40.0%
! CCATTTTACATCTGTCTTCG+AGG - chr7_2:55402361-55402380 Msa1063490:CDS 40.0%
TCTTCGAGGGAATTTGAACT+CGG - chr7_2:55402375-55402394 Msa1063490:CDS 40.0%
AAAGGACCCATCAATCCTAA+AGG - chr7_2:55402594-55402613 Msa1063490:CDS 40.0%
GATGTGAAATCTTTCCTGCA+AGG + chr7_2:55403149-55403168 None:intergenic 40.0%
! TTGGTGATCGAGTTAAGTAC+TGG - chr7_2:55403195-55403214 Msa1063490:intron 40.0%
AATATTGACCTCATTCACCG+TGG + chr7_2:55403222-55403241 None:intergenic 40.0%
!! CTTTCTAGCTAACTGCTCAA+GGG - chr7_2:55403298-55403317 Msa1063490:intron 40.0%
!! TTTCTAGCTAACTGCTCAAG+GGG - chr7_2:55403299-55403318 Msa1063490:intron 40.0%
ACTTCCTTCCTTCACAGTAA+AGG - chr7_2:55403880-55403899 Msa1063490:intron 40.0%
GATTCCTTTACTGTGAAGGA+AGG + chr7_2:55403887-55403906 None:intergenic 40.0%
AATCTCTATCCTCCATGTTC+AGG + chr7_2:55403988-55404007 None:intergenic 40.0%
TTACATGCAAGATATGGCAG+TGG - chr7_2:55404006-55404025 Msa1063490:intron 40.0%
GGTAACATAGTGCAGTAACA+AGG - chr7_2:55404172-55404191 Msa1063490:CDS 40.0%
GGAATGATCATGCCATATGT+TGG + chr7_2:55404363-55404382 None:intergenic 40.0%
!! CATCCTTGAATGATTGGTCT+AGG - chr7_2:55404472-55404491 Msa1063490:intron 40.0%
TGGTCCCAATGTATTTATGC+AGG + chr7_2:55404506-55404525 None:intergenic 40.0%
! TTTTGACACATCGAAAGGAG+TGG - chr7_2:55404608-55404627 Msa1063490:intron 40.0%
GATGTGCTTGAAATACTGAG+TGG - chr7_2:55404668-55404687 Msa1063490:intron 40.0%
AACCTAAGCTCTCTGCAAAA+TGG - chr7_2:55404750-55404769 Msa1063490:CDS 40.0%
! TACCATTTTGCAGAGAGCTT+AGG + chr7_2:55404755-55404774 None:intergenic 40.0%
! GAAGGTGCAGCAAATGAAGA+TGG - chr7_2:55401874-55401893 Msa1063490:intron 45.0%
ATGGCAGGAAACCAAGCATA+TGG - chr7_2:55401893-55401912 Msa1063490:CDS 45.0%
TGGCAGGAAACCAAGCATAT+GGG - chr7_2:55401894-55401913 Msa1063490:CDS 45.0%
!! GCAAAGGTATCCCATATGCT+TGG + chr7_2:55401907-55401926 None:intergenic 45.0%
ATATGGGATACCTTTGCCCA+TGG - chr7_2:55401910-55401929 Msa1063490:CDS 45.0%
GGACAATACCATTTCCACCA+TGG + chr7_2:55401930-55401949 None:intergenic 45.0%
GCGAATATGTACAAGGGTGA+CGG - chr7_2:55402063-55402082 Msa1063490:intron 45.0%
ATAGGCATCTAAGCCCATGT+TGG + chr7_2:55402285-55402304 None:intergenic 45.0%
! TTGATGGGTCCTTTACCATC+TGG + chr7_2:55402588-55402607 None:intergenic 45.0%
GGATCTACCACAATCACTTG+AGG - chr7_2:55402767-55402786 Msa1063490:intron 45.0%
!!! TTTTTTGGGCGTTAACCCTC+CGG - chr7_2:55402860-55402879 Msa1063490:CDS 45.0%
! GGCTCTGGTAATTTGGAGTT+CGG - chr7_2:55402898-55402917 Msa1063490:CDS 45.0%
ATGGTTAATGAGCTCCACCA+CGG + chr7_2:55402998-55403017 None:intergenic 45.0%
!! TCGAGTTAAGTACTGGACCA+CGG - chr7_2:55403202-55403221 Msa1063490:intron 45.0%
GAGCAGTTAGCTAGAAAGGA+AGG + chr7_2:55403296-55403315 None:intergenic 45.0%
CCTTGAGCAGTTAGCTAGAA+AGG + chr7_2:55403300-55403319 None:intergenic 45.0%
!! CCTTTCTAGCTAACTGCTCA+AGG - chr7_2:55403297-55403316 Msa1063490:intron 45.0%
CTTCAGCTGCAAGATTGTAC+AGG - chr7_2:55403375-55403394 Msa1063490:intron 45.0%
AAAGTGCAGGGTATGCAACA+TGG - chr7_2:55403521-55403540 Msa1063490:intron 45.0%
ACTGTGAAGGAAGGAAGTCT+TGG + chr7_2:55403878-55403897 None:intergenic 45.0%
!! AGCCTTCGAGTTCATTTTGC+AGG - chr7_2:55404429-55404448 Msa1063490:intron 45.0%
AGCCTGCAAAATGAACTCGA+AGG + chr7_2:55404434-55404453 None:intergenic 45.0%
CACCCTAGACCAATCATTCA+AGG + chr7_2:55404478-55404497 None:intergenic 45.0%
GTGCAGCAAATGAAGATGGC+AGG - chr7_2:55401878-55401897 Msa1063490:intron 50.0%
! ACCTTTGCCCATGGTGGAAA+TGG - chr7_2:55401919-55401938 Msa1063490:CDS 50.0%
ACCATTTCCACCATGGGCAA+AGG + chr7_2:55401923-55401942 None:intergenic 50.0%
GACGGAGATATTGCATGCGA+TGG - chr7_2:55402081-55402100 Msa1063490:intron 50.0%
ACAAGACCTCGATTTCCTGC+AGG - chr7_2:55402241-55402260 Msa1063490:CDS 50.0%
CATCTTCCTGCAGGAAATCG+AGG + chr7_2:55402250-55402269 None:intergenic 50.0%
TGAGTTCGACATCTTCCTGC+AGG + chr7_2:55402259-55402278 None:intergenic 50.0%
GCAGGAAGATGTCGAACTCA+TGG - chr7_2:55402259-55402278 Msa1063490:CDS 50.0%
TGTCGAACTCATGGCCAACA+TGG - chr7_2:55402268-55402287 Msa1063490:CDS 50.0%
GTCGAACTCATGGCCAACAT+GGG - chr7_2:55402269-55402288 Msa1063490:CDS 50.0%
TCATGGTCGCGACTTATTCC+AGG - chr7_2:55402317-55402336 Msa1063490:CDS 50.0%
GTCGCGACTTATTCCAGGTA+AGG - chr7_2:55402322-55402341 Msa1063490:CDS 50.0%
! CGTTAACCCTCCGGTTCTAA+GGG - chr7_2:55402869-55402888 Msa1063490:CDS 50.0%
!! GTTAACCCTCCGGTTCTAAG+GGG - chr7_2:55402870-55402889 Msa1063490:CDS 50.0%
! GGAAAGGGGCTCTGGTAATT+TGG - chr7_2:55402891-55402910 Msa1063490:CDS 50.0%
TCTCCTGAACAATTCGTCCG+TGG - chr7_2:55402978-55402997 Msa1063490:CDS 50.0%
AAGGAAGGAGAACACCTCTG+AGG + chr7_2:55403281-55403300 None:intergenic 50.0%
AAGGGCCCAAGACTTCATGA+TGG - chr7_2:55403619-55403638 Msa1063490:intron 50.0%
AGGGCCCAAGACTTCATGAT+GGG - chr7_2:55403620-55403639 Msa1063490:intron 50.0%
CCACCCCATCATGAAGTCTT+GGG + chr7_2:55403627-55403646 None:intergenic 50.0%
ACCACCCCATCATGAAGTCT+TGG + chr7_2:55403628-55403647 None:intergenic 50.0%
CAATCCTGCAAGCCTGAACA+TGG - chr7_2:55403973-55403992 Msa1063490:intron 50.0%
TGGGATACCTTTGCCCATGG+TGG - chr7_2:55401913-55401932 Msa1063490:CDS 55.0%
GCGTTAACCCTCCGGTTCTA+AGG - chr7_2:55402868-55402887 Msa1063490:CDS 55.0%
CCTTTCCCCTTAGAACCGGA+GGG + chr7_2:55402878-55402897 None:intergenic 55.0%
!! CCTCCGGTTCTAAGGGGAAA+GGG - chr7_2:55402876-55402895 Msa1063490:CDS 55.0%
!! CTCCGGTTCTAAGGGGAAAG+GGG - chr7_2:55402877-55402896 Msa1063490:CDS 55.0%
AGCCCCTTTCCCCTTAGAAC+CGG + chr7_2:55402882-55402901 None:intergenic 55.0%
! TTCTAAGGGGAAAGGGGCTC+TGG - chr7_2:55402883-55402902 Msa1063490:CDS 55.0%
CCACCACGGACGAATTGTTC+AGG + chr7_2:55402984-55403003 None:intergenic 55.0%
CCTGAACAATTCGTCCGTGG+TGG - chr7_2:55402981-55403000 Msa1063490:CDS 55.0%
GTACTGGACCACGGTGAATG+AGG - chr7_2:55403211-55403230 Msa1063490:intron 55.0%
! GAAGGAGAACACCTCTGAGG+CGG + chr7_2:55403278-55403297 None:intergenic 55.0%
GAAGTCTTGGGCCCTTTGAG+TGG + chr7_2:55403615-55403634 None:intergenic 55.0%
GGGCCCAAGACTTCATGATG+GGG - chr7_2:55403621-55403640 Msa1063490:intron 55.0%
! CCCAAGACTTCATGATGGGG+TGG - chr7_2:55403624-55403643 Msa1063490:intron 55.0%
TCCTGCAAGCCTGAACATGG+AGG - chr7_2:55403976-55403995 Msa1063490:intron 55.0%
TCCTCCATGTTCAGGCTTGC+AGG + chr7_2:55403980-55403999 None:intergenic 55.0%
!! CCCTCCGGTTCTAAGGGGAA+AGG - chr7_2:55402875-55402894 Msa1063490:CDS 60.0%
CCCTTTCCCCTTAGAACCGG+AGG + chr7_2:55402879-55402898 None:intergenic 60.0%
TTGGAATGGCACCGCCTCAG+AGG - chr7_2:55403264-55403283 Msa1063490:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 55401244 55404994 55401244 ID=Msa1063490;Name=Msa1063490
chr7_2 mRNA 55401244 55404994 55401244 ID=Msa1063490-mRNA-1;Parent=Msa1063490;Name=Msa1063490-mRNA-1;_AED=0.37;_eAED=0.37;_QI=158|0.77|0.9|1|1|1|10|135|459
chr7_2 exon 55401244 55401613 55401244 ID=Msa1063490-mRNA-1:exon:10374;Parent=Msa1063490-mRNA-1
chr7_2 exon 55401697 55401787 55401697 ID=Msa1063490-mRNA-1:exon:10373;Parent=Msa1063490-mRNA-1
chr7_2 exon 55401892 55401979 55401892 ID=Msa1063490-mRNA-1:exon:10372;Parent=Msa1063490-mRNA-1
chr7_2 exon 55402066 55402097 55402066 ID=Msa1063490-mRNA-1:exon:10371;Parent=Msa1063490-mRNA-1
chr7_2 exon 55402201 55402421 55402201 ID=Msa1063490-mRNA-1:exon:10370;Parent=Msa1063490-mRNA-1
chr7_2 exon 55402593 55402708 55402593 ID=Msa1063490-mRNA-1:exon:10369;Parent=Msa1063490-mRNA-1
chr7_2 exon 55402829 55403084 55402829 ID=Msa1063490-mRNA-1:exon:10368;Parent=Msa1063490-mRNA-1
chr7_2 exon 55404119 55404233 55404119 ID=Msa1063490-mRNA-1:exon:10367;Parent=Msa1063490-mRNA-1
chr7_2 exon 55404298 55404367 55404298 ID=Msa1063490-mRNA-1:exon:10366;Parent=Msa1063490-mRNA-1
chr7_2 exon 55404681 55404994 55404681 ID=Msa1063490-mRNA-1:exon:10365;Parent=Msa1063490-mRNA-1
chr7_2 five_prime_UTR 55404837 55404994 55404837 ID=Msa1063490-mRNA-1:five_prime_utr;Parent=Msa1063490-mRNA-1
chr7_2 CDS 55404681 55404836 55404681 ID=Msa1063490-mRNA-1:cds;Parent=Msa1063490-mRNA-1
chr7_2 CDS 55404298 55404367 55404298 ID=Msa1063490-mRNA-1:cds;Parent=Msa1063490-mRNA-1
chr7_2 CDS 55404119 55404233 55404119 ID=Msa1063490-mRNA-1:cds;Parent=Msa1063490-mRNA-1
chr7_2 CDS 55402829 55403084 55402829 ID=Msa1063490-mRNA-1:cds;Parent=Msa1063490-mRNA-1
chr7_2 CDS 55402593 55402708 55402593 ID=Msa1063490-mRNA-1:cds;Parent=Msa1063490-mRNA-1
chr7_2 CDS 55402201 55402421 55402201 ID=Msa1063490-mRNA-1:cds;Parent=Msa1063490-mRNA-1
chr7_2 CDS 55402066 55402097 55402066 ID=Msa1063490-mRNA-1:cds;Parent=Msa1063490-mRNA-1
chr7_2 CDS 55401892 55401979 55401892 ID=Msa1063490-mRNA-1:cds;Parent=Msa1063490-mRNA-1
chr7_2 CDS 55401697 55401787 55401697 ID=Msa1063490-mRNA-1:cds;Parent=Msa1063490-mRNA-1
chr7_2 CDS 55401379 55401613 55401379 ID=Msa1063490-mRNA-1:cds;Parent=Msa1063490-mRNA-1
chr7_2 three_prime_UTR 55401244 55401378 55401244 ID=Msa1063490-mRNA-1:three_prime_utr;Parent=Msa1063490-mRNA-1
Gene Sequence

>Msa1063490

ATGAGTATGGCTTTGATCTTGAAGAATTTTTCTTTGACAGAATTATTAACTGCTGCTGCAGTGTTAGTAGTAATCCTTTTCCCTAGTGCTTATAGTTTGAACAAAGATGACTTCCCTTCTGACTTTGTGTTTGGTGTATCAACTTCAGCTTACCAATTTGAAGGTGCAGCAAATGAAGATGGCAGGAAACCAAGCATATGGGATACCTTTGCCCATGGTGGAAATGGTTTTCTTTATTCTGCTGTTGTGTTGAAACAAAAATTTATAGTTAAAGTATATTTTCAGCGAATATGTACAAGGGTGACGGAGATATTGCATGCGATGGATATCACAAATACAAGGAAAGATTTCACATCATATGCTGATGTGTGCTTCAAAGAATTTGGTGATCGAGTTAAGTACTGGACCACGGTGAATGAGGTCAATATTTATGCAATGTTTGGCTATGATATTGGAATGGCACCGCCTCAGAGGTGTTCTCCTTCCTTTCTAGCTAACTGCTCAAGGGGAAATTCTTCAACTGAGCCATATTTGGCAGCTCATCATATGTTGTTAGCACATGCTTCAGCTGCAAGATTGTACAGGAAGAAATATAAGGGTATGCAACATGGATTTATAGGGTTTAATCTTCTTACTTTTGGTTTTGTTCCACTGACAAATACTAGTGAAGATATAATTGCCACTCAAAGGGCCCAAGACTTCATGATGGGGTGGGTTTTAAATCCTTTAACATTTGGTGATTATCCTGATATAATGAAAAAGAATGTTGGACCAAGACTTCCTTCCTTCACAGTAAAGGAATCAAATCTGATCAAGAGCTCAATTGACTTCTTAGGAGTAAACTTTTACAACTTAATATATGTTCAGAACAATCCTGCAAGCCTGAACATGGAGGATAGAGATTACATGCAAGATATGGCAGTGGAAATTACAATCATGATAGAAAATGATACATCAATAGATGAGTTTCCGATTACAACCAAGAATTTTCAAGAGGTGCTACATTACTTGAAGAATGATTATGGAAATTTTCCAATTTACATACATGAAAATGGCTACAGAACACTTCGCAATTCATCCTTGAATGATTGGTCTAGGGTGAAGTACCTGCATAAATACATTGGGACCATAGCTAATGAAATAAGGAGTGGATCGAATATAAAAGGTTATTTTGTATGGTCCTTCATGGATGTGCTTGAAATACTGAGTGGATATGAAGAAAGTTTTGGCCTATACTACATAGATATGAAAGATCCAAACTTGAAGAGACAACCTAAGCTCTCTGCAAAATGGTACTCAAATTTTCTGAAAAGGAAGCCTATGGACTCAAAGATTACTATGGAAATTGAGAATGATGCACCATGTAAATCATTGCTATAA
Protein sequence

>Msa1063490

MSMALILKNFSLTELLTAAAVLVVILFPSAYSLNKDDFPSDFVFGVSTSAYQFEGAANEDGRKPSIWDTFAHGGNGFLYSAVVLKQKFIVKVYFQRICTRVTEILHAMDITNTRKDFTSYADVCFKEFGDRVKYWTTVNEVNIYAMFGYDIGMAPPQRCSPSFLANCSRGNSSTEPYLAAHHMLLAHASAARLYRKKYKGMQHGFIGFNLLTFGFVPLTNTSEDIIATQRAQDFMMGWVLNPLTFGDYPDIMKKNVGPRLPSFTVKESNLIKSSIDFLGVNFYNLIYVQNNPASLNMEDRDYMQDMAVEITIMIENDTSIDEFPITTKNFQEVLHYLKNDYGNFPIYIHENGYRTLRNSSLNDWSRVKYLHKYIGTIANEIRSGSNIKGYFVWSFMDVLEILSGYEESFGLYYIDMKDPNLKRQPKLSAKWYSNFLKRKPMDSKITMEIENDAPCKSLL*