AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1382740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1382740 MtrunA17_Chr3g0130611 92.045 528 5 3 19 509 1 528 0.0 961
Msa1382740 MtrunA17_Chr1g0209091 40.421 522 271 6 19 503 1 519 1.95e-128 384
Msa1382740 MtrunA17_Chr1g0209111 39.216 255 141 3 32 273 12 265 7.20e-62 204
Msa1382740 MtrunA17_Chr1g0209101 39.844 256 128 3 272 503 4 257 1.79e-54 184
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1382740 AT2G01170.1 39.923 521 267 7 19 502 3 514 3.58e-118 358
Msa1382740 AT2G01170.2 39.220 436 225 6 104 502 3 435 6.86e-91 285

Find 125 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGCATCATTTCAGTATT+TGG 0.119079 tig0020524:-35647 Msa1382740:CDS
TCAACTTTGATTCAGGATTT+TGG 0.145062 tig0020524:-35242 Msa1382740:intron
CAACTGGTTCTCTGTACTTT+TGG 0.160818 tig0020524:-36761 Msa1382740:CDS
AATTATGCACCTGTTGCTTT+AGG 0.178838 tig0020524:-34398 Msa1382740:CDS
AGATGCAAGAAAATGGTTTA+AGG 0.226303 tig0020524:-34339 Msa1382740:CDS
ACTACATTCACCTTCAAAAT+TGG 0.230691 tig0020524:+34641 None:intergenic
GCAGCAATCTGCATTCTTCT+TGG 0.235084 tig0020524:-34668 Msa1382740:CDS
ATACATAAGAATAGCCATTT+TGG 0.251599 tig0020524:+36348 None:intergenic
TTCTTCCATAAGAATGAAAA+TGG 0.252336 tig0020524:+34737 None:intergenic
CAGGCCCTGCAAGTCTTGTT+TGG 0.252615 tig0020524:-37283 Msa1382740:CDS
TTTGCTTGATAGCATTTCTA+TGG 0.255593 tig0020524:-34484 Msa1382740:CDS
ACATTGGCCTCACTGTTATA+TGG 0.257508 tig0020524:-36323 Msa1382740:CDS
ATTATGCACCTGTTGCTTTA+GGG 0.273593 tig0020524:-34397 Msa1382740:CDS
GGCACTTACATTCAGCATTC+AGG 0.273760 tig0020524:-35609 Msa1382740:intron
AGGCCCTGCAAGTCTTGTTT+GGG 0.292654 tig0020524:-37282 Msa1382740:CDS
GGGTATTAGATGCAAGAAAA+TGG 0.313548 tig0020524:-34346 Msa1382740:CDS
CACATTTAGCTGGTCCGAAA+TGG 0.325538 tig0020524:-36734 Msa1382740:CDS
GCTCCAGCTGTCTCATTGTT+TGG 0.328718 tig0020524:+35206 None:intergenic
TTGAAAGTATCCCATGTAAT+AGG 0.337507 tig0020524:+34419 None:intergenic
GTTTCTTCACTTGGTTTGTT+GGG 0.339481 tig0020524:-37244 Msa1382740:CDS
CTCTCAACAGGCACAAATAA+AGG 0.345923 tig0020524:-36387 Msa1382740:CDS
GAAGAAAATGGTCCCCATTT+CGG 0.356622 tig0020524:+36720 None:intergenic
TGTCACTTCCGGAACAAAAC+TGG 0.363476 tig0020524:+37567 None:intergenic
TGTTTCTTCACTTGGTTTGT+TGG 0.363835 tig0020524:-37245 Msa1382740:CDS
CTTGCCTTGCCCAAATAAAA+AGG 0.366855 tig0020524:+34515 None:intergenic
TGAGCATCAATGTTCCTAAC+TGG 0.368203 tig0020524:+34314 None:intergenic
CTATGCCCTGTCAAGGGATA+AGG 0.370330 tig0020524:-34765 Msa1382740:CDS
GAGGGTACTTTGCTCCAAAA+TGG 0.371022 tig0020524:-36362 Msa1382740:CDS
TCATCGATATAATTTCAATA+TGG 0.373370 tig0020524:-36263 Msa1382740:CDS
GTTGCTTTAGGGGTCGGTTT+GGG 0.377735 tig0020524:-34386 Msa1382740:CDS
TCTCATTGTTTGGATCATAA+AGG 0.378149 tig0020524:+35216 None:intergenic
GATGCAAGAAAATGGTTTAA+GGG 0.381285 tig0020524:-34338 Msa1382740:CDS
ATCACCATTCTTGCAAAGAT+TGG 0.383163 tig0020524:+34563 None:intergenic
GTGAGCCAGTATTCCCTCTA+TGG 0.384775 tig0020524:-35746 Msa1382740:intron
CTGCAAGTCTTGTTTGGGGA+TGG 0.389171 tig0020524:-37277 Msa1382740:CDS
TTTCTTCATGGTGTTGTGCT+TGG 0.389525 tig0020524:-36704 Msa1382740:CDS
TGTTGCTTTAGGGGTCGGTT+TGG 0.389839 tig0020524:-34387 Msa1382740:CDS
CATCCCCAAACAAGACTTGC+AGG 0.394578 tig0020524:+37278 None:intergenic
AGAAATGCTATCAAGCAAAT+TGG 0.403456 tig0020524:+34488 None:intergenic
TCAACAGAACCCTTGTTACA+TGG 0.405450 tig0020524:-37599 Msa1382740:CDS
AATGGTTTAAGGGGCCAGTT+AGG 0.414282 tig0020524:-34328 Msa1382740:CDS
TAGTTGTTTGTTTCTTCACT+TGG 0.416921 tig0020524:-37253 Msa1382740:CDS
ACATTTAGCTGGTCCGAAAT+GGG 0.416980 tig0020524:-36733 Msa1382740:CDS
GTTTGGGTCTAATAATGCTT+TGG 0.418172 tig0020524:-34370 Msa1382740:CDS
TTTGTAGGAACCTTGTGTTT+TGG 0.418644 tig0020524:+34707 None:intergenic
GCACAACACCATGAAGAAAA+TGG 0.419284 tig0020524:+36708 None:intergenic
ATTTGGATGGGCTTACATCT+TGG 0.421982 tig0020524:-35630 Msa1382740:CDS
AATGATAGAATCACTGCATA+TGG 0.426309 tig0020524:+35773 None:intergenic
TGGGTCTAATAATGCTTTGG+TGG 0.434711 tig0020524:-34367 Msa1382740:CDS
CAACTCTTTATCCTATTACA+TGG 0.435931 tig0020524:-34430 Msa1382740:CDS
GATTCAATCTAACAGACAAC+TGG 0.436647 tig0020524:-36777 Msa1382740:intron
CAGAGCCATACAGCATTTGT+AGG 0.439578 tig0020524:+34692 None:intergenic
ATAACTTCAATAGCCACAAT+TGG 0.440996 tig0020524:-34608 Msa1382740:CDS
ACTGGAATCACACCTCTGTA+TGG 0.444050 tig0020524:-37323 Msa1382740:CDS
GCAAGAACTAAGAAGAGAAA+TGG 0.444571 tig0020524:-37491 Msa1382740:intron
CCAGGCTTGAAGTTCTTCTC+AGG 0.445201 tig0020524:+34539 None:intergenic
GAATTAGCATCTGATACAAC+AGG 0.449362 tig0020524:-35809 Msa1382740:CDS
GCACCTGTTGCTTTAGGGGT+CGG 0.452904 tig0020524:-34392 Msa1382740:CDS
TGCAAGTCTTGTTTGGGGAT+GGG 0.454102 tig0020524:-37276 Msa1382740:CDS
TAGGATAAAGAGTTGGCAAC+AGG 0.454242 tig0020524:+34438 None:intergenic
CATTGGCCTCACTGTTATAT+GGG 0.456388 tig0020524:-36322 Msa1382740:CDS
AGTTCCAATCTTTGCAAGAA+TGG 0.458612 tig0020524:-34567 Msa1382740:CDS
GCATCATTTCAGTATTTGGA+TGG 0.461596 tig0020524:-35643 Msa1382740:CDS
AGTTTAATCCTACTCTCAAC+AGG 0.469361 tig0020524:-36399 Msa1382740:CDS
GGAAGATATCACAATTCTGC+TGG 0.469478 tig0020524:-35146 Msa1382740:CDS
AAACCGACCCCTAAAGCAAC+AGG 0.470449 tig0020524:+34389 None:intergenic
TTTCTGTGTCAGGTTATTGG+TGG 0.473306 tig0020524:-35905 Msa1382740:intron
GAACTCCCTTATCCCTTGAC+AGG 0.479526 tig0020524:+34759 None:intergenic
AATACTACCAAGTATTGCTA+TGG 0.480039 tig0020524:+35667 None:intergenic
GCCACAATTGGATGGGTTGG+TGG 0.481482 tig0020524:-34596 Msa1382740:CDS
GGGTCTAATAATGCTTTGGT+GGG 0.484279 tig0020524:-34366 Msa1382740:CDS
TATAATTTCAATATGGTGGC+AGG 0.485261 tig0020524:-36256 Msa1382740:intron
TATGCCCTGTCAAGGGATAA+GGG 0.485928 tig0020524:-34764 Msa1382740:CDS
ATAGCAATACTTGGTAGTAT+TGG 0.486608 tig0020524:-35665 Msa1382740:CDS
TTATGCACCTGTTGCTTTAG+GGG 0.491456 tig0020524:-34396 Msa1382740:CDS
CTTCAATAGCCACAATTGGA+TGG 0.494941 tig0020524:-34604 Msa1382740:CDS
ATGGTTGGAAAGGCGTATGC+AGG 0.497048 tig0020524:-36438 Msa1382740:intron
CATCATTTCAGTATTTGGAT+GGG 0.498028 tig0020524:-35642 Msa1382740:CDS
CAGAATTGTGATATCTTCCA+TGG 0.503563 tig0020524:+35150 None:intergenic
TATTGAAATTATATCGATGA+AGG 0.507414 tig0020524:+36266 None:intergenic
AACTCTTTATCCTATTACAT+GGG 0.509862 tig0020524:-34429 Msa1382740:CDS
TATTTGTGCCTGTTGAGAGT+AGG 0.510878 tig0020524:+36391 None:intergenic
CCTGAGAAGAACTTCAAGCC+TGG 0.511772 tig0020524:-34539 Msa1382740:CDS
AATATGAATTCATCCAATAG+TGG 0.513484 tig0020524:-39124 Msa1382740:intron
GGTTCTAGCCTTCTGTATGC+AGG 0.514787 tig0020524:-37302 Msa1382740:CDS
GATAGTGATACTGTTACCTC+TGG 0.519304 tig0020524:-35876 Msa1382740:CDS
TTCAGGTCTATGCCCTGTCA+AGG 0.519937 tig0020524:-34772 Msa1382740:intron
ATAGCCACAATTGGATGGGT+TGG 0.526969 tig0020524:-34599 Msa1382740:CDS
GTTTCAGTCCCCATGTAACA+AGG 0.526977 tig0020524:+37589 None:intergenic
GAGAAGAGACTAAATGAGCT+TGG 0.534894 tig0020524:-37520 Msa1382740:CDS
AGGTTCCTACAAATGCTGTA+TGG 0.535547 tig0020524:-34697 Msa1382740:CDS
GATCCAAACAATGAGACAGC+TGG 0.539193 tig0020524:-35209 Msa1382740:CDS
TCGATATAATTTCAATATGG+TGG 0.540538 tig0020524:-36260 Msa1382740:CDS
TTCAATAGCCACAATTGGAT+GGG 0.541163 tig0020524:-34603 Msa1382740:CDS
AGTGACAGAAAACATAGCTA+TGG 0.548979 tig0020524:-37551 Msa1382740:CDS
ATGCAAGAAAATGGTTTAAG+GGG 0.550033 tig0020524:-34337 Msa1382740:CDS
CTGCAGCATCATATCCATAG+AGG 0.550623 tig0020524:+35732 None:intergenic
AATGGACCCATAGCAATACT+TGG 0.552434 tig0020524:-35674 Msa1382740:CDS
ATACTCTATGATGCATTCCA+TGG 0.552503 tig0020524:-35167 Msa1382740:CDS
ACTAAAGGTGCAGACAAGAA+TGG 0.554611 tig0020524:-35692 Msa1382740:CDS
ACAGGCACAAATAAAGGCGG+AGG 0.555550 tig0020524:-36381 Msa1382740:CDS
CAACAGAACCCTTGTTACAT+GGG 0.555798 tig0020524:-37598 Msa1382740:CDS
CTATTCTTATGTATGTACAT+TGG 0.562884 tig0020524:-36339 Msa1382740:CDS
TTGGTTTGTTGGGATTGCAA+TGG 0.572687 tig0020524:-37234 Msa1382740:CDS
CATGTAATAGGATAAAGAGT+TGG 0.573094 tig0020524:+34431 None:intergenic
ACCACCAACCCATCCAATTG+TGG 0.576324 tig0020524:+34595 None:intergenic
TCAGGTCTATGCCCTGTCAA+GGG 0.590519 tig0020524:-34771 Msa1382740:intron
GCATCATAGAGTATTTGTGC+TGG 0.596421 tig0020524:+35176 None:intergenic
CATTTAACTGAAGAAACTAA+AGG 0.601435 tig0020524:-35707 Msa1382740:CDS
GGCCCTGCAAGTCTTGTTTG+GGG 0.606319 tig0020524:-37281 Msa1382740:CDS
ATACTACCAAGTATTGCTAT+GGG 0.606656 tig0020524:+35668 None:intergenic
TTGCAGGGCCTGCATACAGA+AGG 0.612492 tig0020524:+37294 None:intergenic
CATTTAGCTGGTCCGAAATG+GGG 0.626758 tig0020524:-36732 Msa1382740:CDS
TGCAGCATCATATCCATAGA+GGG 0.645076 tig0020524:+35733 None:intergenic
AGTGATACTGTTACCTCTGG+TGG 0.645216 tig0020524:-35873 Msa1382740:CDS
ATCCCCAAACAAGACTTGCA+GGG 0.654831 tig0020524:+37279 None:intergenic
AACAGAACCCTTGTTACATG+GGG 0.656415 tig0020524:-37597 Msa1382740:CDS
TTTCAGTCCCCATGTAACAA+GGG 0.659735 tig0020524:+37590 None:intergenic
TGTTTAGTTAGTGCCACCAG+AGG 0.660806 tig0020524:+35860 None:intergenic
CAGGCACAAATAAAGGCGGA+GGG 0.669164 tig0020524:-36380 Msa1382740:CDS
AACTCCCTTATCCCTTGACA+GGG 0.675866 tig0020524:+34760 None:intergenic
GAAACTGCATCCAAAACACA+AGG 0.696453 tig0020524:-34717 Msa1382740:CDS
TCAACAGGCACAAATAAAGG+CGG 0.709488 tig0020524:-36384 Msa1382740:CDS
ATGCTGCCCATATAACAGTG+AGG 0.755036 tig0020524:+36316 None:intergenic
AGAAGGCTAGAACCATACAG+AGG 0.767417 tig0020524:+37311 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTTTGTATATTAGAT+TGG + tig0020524:35111-35130 None:intergenic 10.0%
!!! TCTTTATTTTATAATTGAAA+AGG + tig0020524:36520-36539 None:intergenic 10.0%
!!! TCTACAATTAAATTGTATTT+TGG + tig0020524:34838-34857 None:intergenic 15.0%
!! ATATTTAATTAGAAAAGTCA+CGG - tig0020524:35058-35077 Msa1382740:intron 15.0%
!! AAATTTCAAAATCGAAATTT+GGG + tig0020524:36472-36491 None:intergenic 15.0%
!! TTATTCACTTAAATATCATA+CGG - tig0020524:37238-37257 Msa1382740:CDS 15.0%
!! CAAAAAAATTCAAATATGTT+AGG + tig0020524:38108-38127 None:intergenic 15.0%
!! AATTTCTTTCTTAGTTTCAA+AGG + tig0020524:34974-34993 None:intergenic 20.0%
!! TAATGTGTTCTTATTGTTAA+AGG - tig0020524:35445-35464 Msa1382740:intron 20.0%
!! AATATTTGAATAGTTATCTG+AGG + tig0020524:35611-35630 None:intergenic 20.0%
!! ATATGTAGACAGTAAATATT+TGG + tig0020524:36440-36459 None:intergenic 20.0%
!! CAAATTTCAAAATCGAAATT+TGG + tig0020524:36473-36492 None:intergenic 20.0%
!! TATTGAAATTATATCGATGA+AGG + tig0020524:37156-37175 None:intergenic 20.0%
!! TCATCGATATAATTTCAATA+TGG - tig0020524:37156-37175 Msa1382740:intron 20.0%
!!! TAATTTGCCCAATTTTTATT+AGG - tig0020524:37475-37494 Msa1382740:intron 20.0%
!! GTTACTTCCTAATAAAAATT+GGG + tig0020524:37485-37504 None:intergenic 20.0%
!!! TGTTACTTCCTAATAAAAAT+TGG + tig0020524:37486-37505 None:intergenic 20.0%
!!! GACTTAAACTAAACAATTTT+TGG - tig0020524:38127-38146 Msa1382740:intron 20.0%
! AAAGGTCACAAATTTCTATA+CGG - tig0020524:34322-34341 Msa1382740:CDS 25.0%
!!! AAATTGTATTTTGGACCTTT+TGG + tig0020524:34829-34848 None:intergenic 25.0%
! TCATTAATGAAATCACAACA+TGG - tig0020524:34948-34967 Msa1382740:intron 25.0%
! TTAAAAATGTGTCAAAGTGA+AGG - tig0020524:35157-35176 Msa1382740:CDS 25.0%
! GACACATAATAAGATGAAAA+CGG + tig0020524:35250-35269 None:intergenic 25.0%
!!! ACTATATGATTTTAGAGTGA+TGG + tig0020524:35347-35366 None:intergenic 25.0%
!! TGAGAAATTTTCTATCAAGA+TGG + tig0020524:35968-35987 None:intergenic 25.0%
!! TGAAATATGTTCATCTTTTC+CGG - tig0020524:36209-36228 Msa1382740:intron 25.0%
!! TCAAGAATAGCTTTTCATTT+AGG - tig0020524:36541-36560 Msa1382740:intron 25.0%
!! CAAGAATAGCTTTTCATTTA+GGG - tig0020524:36542-36561 Msa1382740:intron 25.0%
!! AAGTAACTCATGATTTTTCA+TGG - tig0020524:36962-36981 Msa1382740:intron 25.0%
!! ATACATAAGAATAGCCATTT+TGG + tig0020524:37074-37093 None:intergenic 25.0%
! CTATTCTTATGTATGTACAT+TGG - tig0020524:37080-37099 Msa1382740:intron 25.0%
! TCGATATAATTTCAATATGG+TGG - tig0020524:37159-37178 Msa1382740:intron 25.0%
! AACAATATTGAGCAATCTTA+TGG + tig0020524:37219-37238 None:intergenic 25.0%
!!! GTACATCTTAGAACATTTTT+TGG + tig0020524:37451-37470 None:intergenic 25.0%
! CATTTAACTGAAGAAACTAA+AGG - tig0020524:37712-37731 Msa1382740:intron 25.0%
! ATATCTTGAAGATATAGTCA+AGG - tig0020524:37866-37885 Msa1382740:intron 25.0%
!!! ATGCTTCAAAACTTATTTTC+AGG + tig0020524:37927-37946 None:intergenic 25.0%
! TTCCTAAAAAAAAAACAGCA+AGG + tig0020524:38040-38059 None:intergenic 25.0%
!!! GTTTTAATCATAAAGACATG+TGG - tig0020524:38577-38596 Msa1382740:intron 25.0%
!! TCTCAAATGAAACAATTTTC+AGG - tig0020524:38630-38649 Msa1382740:intron 25.0%
! TTCTTCCATAAGAATGAAAA+TGG + tig0020524:38685-38704 None:intergenic 25.0%
! AACTCTTTATCCTATTACAT+GGG - tig0020524:38990-39009 Msa1382740:intron 25.0%
TCATCCAATAGTGGTTAAAA+AGG - tig0020524:34304-34323 Msa1382740:CDS 30.0%
AAGGTCACAAATTTCTATAC+GGG - tig0020524:34323-34342 Msa1382740:CDS 30.0%
TAAATACATGGTGTGTATCT+TGG + tig0020524:34506-34525 None:intergenic 30.0%
TCTCTTCTGACATAAATACA+TGG + tig0020524:34518-34537 None:intergenic 30.0%
GTATTTATGTCAGAAGAGAT+AGG - tig0020524:34519-34538 Msa1382740:CDS 30.0%
AGAAGAATGCACAACATAAA+TGG - tig0020524:34621-34640 Msa1382740:CDS 30.0%
! CTATTATTCATGTTTGGCTT+TGG + tig0020524:34673-34692 None:intergenic 30.0%
AGGCAACTATTATTCATGTT+TGG + tig0020524:34679-34698 None:intergenic 30.0%
AACATGAATAATAGTTGCCT+AGG - tig0020524:34679-34698 Msa1382740:CDS 30.0%
AACTGGTTGAGAATATATCA+GGG + tig0020524:34720-34739 None:intergenic 30.0%
TAACTGGTTGAGAATATATC+AGG + tig0020524:34721-34740 None:intergenic 30.0%
! ATTTTGGATGTTCTGATAAC+TGG + tig0020524:34737-34756 None:intergenic 30.0%
!! AAGATAGTTCTGATAGAAAC+CGG - tig0020524:34801-34820 Msa1382740:intron 30.0%
GTGATTTCATTAATGAACCA+CGG + tig0020524:34944-34963 None:intergenic 30.0%
ATTAAGCGACAAAAATGAGT+TGG - tig0020524:35398-35417 Msa1382740:intron 30.0%
CTACTATATGTTTCAGTTGA+AGG + tig0020524:35674-35693 None:intergenic 30.0%
CTTCAACTGAAACATATAGT+AGG - tig0020524:35672-35691 Msa1382740:CDS 30.0%
! TAGTTGTTTGTTTCTTCACT+TGG - tig0020524:36166-36185 Msa1382740:intron 30.0%
! ATAGAAGTAGTACTTTTGTC+CGG - tig0020524:36276-36295 Msa1382740:CDS 30.0%
CAGATAGTAGTAGTACTTTA+AGG - tig0020524:36373-36392 Msa1382740:CDS 30.0%
!! AGCAGGAACAAAGTATTTTT+AGG + tig0020524:36580-36599 None:intergenic 30.0%
CTGTTAGATTGAATCAAAAG+TGG + tig0020524:36637-36656 None:intergenic 30.0%
! TAGTTTTTGCAAAATCTCGA+TGG - tig0020524:36878-36897 Msa1382740:intron 30.0%
! AACTCATGATTTTTCATGGT+TGG - tig0020524:36966-36985 Msa1382740:intron 30.0%
! ATGATTTTTCATGGTTGGAA+AGG - tig0020524:36971-36990 Msa1382740:intron 30.0%
TATAATTTCAATATGGTGGC+AGG - tig0020524:37163-37182 Msa1382740:intron 30.0%
ACTTAAATATCATACGGTCA+CGG - tig0020524:37244-37263 Msa1382740:CDS 30.0%
AACTCATAATATAAGTCGTC+TGG + tig0020524:37301-37320 None:intergenic 30.0%
! AATTTTCTGTGTCAGGTTAT+TGG - tig0020524:37511-37530 Msa1382740:CDS 30.0%
AATGATAGAATCACTGCATA+TGG + tig0020524:37649-37668 None:intergenic 30.0%
! ATACTACCAAGTATTGCTAT+GGG + tig0020524:37754-37773 None:intergenic 30.0%
! AATACTACCAAGTATTGCTA+TGG + tig0020524:37755-37774 None:intergenic 30.0%
! ATAGCAATACTTGGTAGTAT+TGG - tig0020524:37754-37773 Msa1382740:intron 30.0%
ATTGGCATCATTTCAGTATT+TGG - tig0020524:37772-37791 Msa1382740:intron 30.0%
CATCATTTCAGTATTTGGAT+GGG - tig0020524:37777-37796 Msa1382740:intron 30.0%
TTGATACCATCTTAGAACTT+TGG + tig0020524:38015-38034 None:intergenic 30.0%
!!! AGCCTTGCTGTTTTTTTTTT+AGG - tig0020524:38035-38054 Msa1382740:intron 30.0%
!!! ACTAAACAATTTTTGGCAGA+CGG - tig0020524:38134-38153 Msa1382740:intron 30.0%
CCTGAATCAAAGTTGAAAAA+TGG + tig0020524:38173-38192 None:intergenic 30.0%
!! CCATTTTTCAACTTTGATTC+AGG - tig0020524:38170-38189 Msa1382740:intron 30.0%
! TCAACTTTGATTCAGGATTT+TGG - tig0020524:38177-38196 Msa1382740:intron 30.0%
TCTCATTGTTTGGATCATAA+AGG + tig0020524:38206-38225 None:intergenic 30.0%
TAGTTCTCCTGTTTATCATT+TGG - tig0020524:38301-38320 Msa1382740:intron 30.0%
AGTTCTCCTGTTTATCATTT+GGG - tig0020524:38302-38321 Msa1382740:intron 30.0%
! GAGTTCCATTTTCATTCTTA+TGG - tig0020524:38677-38696 Msa1382740:intron 30.0%
ACTACATTCACCTTCAAAAT+TGG + tig0020524:38781-38800 None:intergenic 30.0%
ATAACTTCAATAGCCACAAT+TGG - tig0020524:38811-38830 Msa1382740:intron 30.0%
AGAAATGCTATCAAGCAAAT+TGG + tig0020524:38934-38953 None:intergenic 30.0%
! TTTGCTTGATAGCATTTCTA+TGG - tig0020524:38935-38954 Msa1382740:intron 30.0%
CATGTAATAGGATAAAGAGT+TGG + tig0020524:38991-39010 None:intergenic 30.0%
CAACTCTTTATCCTATTACA+TGG - tig0020524:38989-39008 Msa1382740:intron 30.0%
!! TTGAAAGTATCCCATGTAAT+AGG + tig0020524:39003-39022 None:intergenic 30.0%
AGATGCAAGAAAATGGTTTA+AGG - tig0020524:39080-39099 Msa1382740:intron 30.0%
GATGCAAGAAAATGGTTTAA+GGG - tig0020524:39081-39100 Msa1382740:intron 30.0%
ATGCAAGAAAATGGTTTAAG+GGG - tig0020524:39082-39101 Msa1382740:intron 30.0%
! GTGACCTTTTTAACCACTAT+TGG + tig0020524:34311-34330 None:intergenic 35.0%
AGGTCACAAATTTCTATACG+GGG - tig0020524:34324-34343 Msa1382740:CDS 35.0%
ATAAGCCAAATCTTACAAGC+CGG + tig0020524:34363-34382 None:intergenic 35.0%
CTTATCTTAAGTGAACAGAG+AGG - tig0020524:34378-34397 Msa1382740:CDS 35.0%
ACATAAATGGCCATCATAGT+TGG - tig0020524:34634-34653 Msa1382740:CDS 35.0%
TGAATAATAGTTGCCTAGGA+AGG - tig0020524:34683-34702 Msa1382740:CDS 35.0%
TTGAGAATATATCAGGGTAC+AGG + tig0020524:34714-34733 None:intergenic 35.0%
TCAGAACATCCAAAATGCAA+CGG - tig0020524:34741-34760 Msa1382740:CDS 35.0%
!! TATTTTGGACCTTTTGGTAC+CGG + tig0020524:34823-34842 None:intergenic 35.0%
TACGCTATGACCTATAATGA+TGG - tig0020524:34906-34925 Msa1382740:intron 35.0%
! GACCTATAATGATGGAGAAA+TGG - tig0020524:34914-34933 Msa1382740:intron 35.0%
GACCATTTCTCCATCATTAT+AGG + tig0020524:34919-34938 None:intergenic 35.0%
TCTATCTGACCTACTATCAT+GGG + tig0020524:35084-35103 None:intergenic 35.0%
TTCTATCTGACCTACTATCA+TGG + tig0020524:35085-35104 None:intergenic 35.0%
AACGGAATTTAACAAACCTG+CGG + tig0020524:35232-35251 None:intergenic 35.0%
TTGGCAAATTCAGTTGAATG+TGG + tig0020524:35272-35291 None:intergenic 35.0%
! TGTGCTTGACTTTTCTTTGT+TGG + tig0020524:35291-35310 None:intergenic 35.0%
AAGTGAAACCAAAGCAGAAA+AGG - tig0020524:35493-35512 Msa1382740:intron 35.0%
TCAGTTGAAGGATTCAAACT+TGG + tig0020524:35662-35681 None:intergenic 35.0%
AGTGACAGAAAACATAGCTA+TGG - tig0020524:35868-35887 Msa1382740:CDS 35.0%
GCAAGAACTAAGAAGAGAAA+TGG - tig0020524:35928-35947 Msa1382740:intron 35.0%
!! TGTTTCTTCACTTGGTTTGT+TGG - tig0020524:36174-36193 Msa1382740:intron 35.0%
!! GTTTCTTCACTTGGTTTGTT+GGG - tig0020524:36175-36194 Msa1382740:intron 35.0%
CATGCATAAAAGAGACAAAC+CGG + tig0020524:36231-36250 None:intergenic 35.0%
GGTCAAACTTTGGATTATCA+GGG + tig0020524:36317-36336 None:intergenic 35.0%
TGGTCAAACTTTGGATTATC+AGG + tig0020524:36318-36337 None:intergenic 35.0%
TAATCCAAAGTTTGACCATG+AGG - tig0020524:36320-36339 Msa1382740:CDS 35.0%
TTTACCTCATGGTCAAACTT+TGG + tig0020524:36327-36346 None:intergenic 35.0%
GATTCAATCTAACAGACAAC+TGG - tig0020524:36642-36661 Msa1382740:intron 35.0%
!! AACTGGTTCTCTGTACTTTT+GGG - tig0020524:36659-36678 Msa1382740:intron 35.0%
GGTTAAACTTCGTGTATGTT+TGG - tig0020524:36790-36809 Msa1382740:intron 35.0%
AACTTCGTGTATGTTTGGAT+TGG - tig0020524:36795-36814 Msa1382740:intron 35.0%
! GGTGGGTTTGATAAAAATCA+CGG - tig0020524:36819-36838 Msa1382740:intron 35.0%
GAAAACACTGAGTACATGTT+TGG + tig0020524:36924-36943 None:intergenic 35.0%
AGTTTAATCCTACTCTCAAC+AGG - tig0020524:37020-37039 Msa1382740:intron 35.0%
TAATATAAGTCGTCTGGTCT+TGG + tig0020524:37295-37314 None:intergenic 35.0%
GAATTAGCATCTGATACAAC+AGG - tig0020524:37610-37629 Msa1382740:CDS 35.0%
GCATCATTTCAGTATTTGGA+TGG - tig0020524:37776-37795 Msa1382740:intron 35.0%
ACGAACACTTAGTCTCATAA+TGG - tig0020524:37890-37909 Msa1382740:intron 35.0%
TACCATCTTAGAACTTTGGT+TGG + tig0020524:38011-38030 None:intergenic 35.0%
!!! CTAAACAATTTTTGGCAGAC+GGG - tig0020524:38135-38154 Msa1382740:intron 35.0%
ATACTCTATGATGCATTCCA+TGG - tig0020524:38252-38271 Msa1382740:intron 35.0%
CAGAATTGTGATATCTTCCA+TGG + tig0020524:38272-38291 None:intergenic 35.0%
GTTCTCCTGTTTATCATTTG+GGG - tig0020524:38303-38322 Msa1382740:intron 35.0%
ATGAACCCCAAATGATAAAC+AGG + tig0020524:38311-38330 None:intergenic 35.0%
! ATTTGGGGTTCATTCTTCTT+TGG - tig0020524:38318-38337 Msa1382740:intron 35.0%
TGGTAAGTACTAAACCTGTT+TGG - tig0020524:38373-38392 Msa1382740:intron 35.0%
GGTAAGTACTAAACCTGTTT+GGG - tig0020524:38374-38393 Msa1382740:intron 35.0%
! GTTTTGCAACTCGAATGAAT+CGG + tig0020524:38400-38419 None:intergenic 35.0%
!! CTTATTTCTATAAGCTCTCC+AGG - tig0020524:38464-38483 Msa1382740:intron 35.0%
! TCTGTTTTCATAAGCTATCC+TGG + tig0020524:38485-38504 None:intergenic 35.0%
! TTTGTAGGAACCTTGTGTTT+TGG + tig0020524:38715-38734 None:intergenic 35.0%
! TCTTGGTCTACCAATTTTGA+AGG - tig0020524:38768-38787 Msa1382740:intron 35.0%
TTCAATAGCCACAATTGGAT+GGG - tig0020524:38816-38835 Msa1382740:intron 35.0%
AGTTCCAATCTTTGCAAGAA+TGG - tig0020524:38852-38871 Msa1382740:intron 35.0%
ATCACCATTCTTGCAAAGAT+TGG + tig0020524:38859-38878 None:intergenic 35.0%
!! AAGCCTGGACCTTTTTATTT+GGG - tig0020524:38895-38914 Msa1382740:intron 35.0%
!! AATTATGCACCTGTTGCTTT+AGG - tig0020524:39021-39040 Msa1382740:intron 35.0%
!! ATTATGCACCTGTTGCTTTA+GGG - tig0020524:39022-39041 Msa1382740:intron 35.0%
GTTTGGGTCTAATAATGCTT+TGG - tig0020524:39049-39068 Msa1382740:intron 35.0%
GGGTATTAGATGCAAGAAAA+TGG - tig0020524:39073-39092 Msa1382740:intron 35.0%
GACCAAAGTTCCAACTATGA+TGG + tig0020524:34647-34666 None:intergenic 40.0%
TCATAGTTGGAACTTTGGTC+TGG - tig0020524:34647-34666 Msa1382740:CDS 40.0%
TGATAGAAACCGGTACCAAA+AGG - tig0020524:34811-34830 Msa1382740:intron 40.0%
GAGGATATCTTTGACATGTC+AGG + tig0020524:35199-35218 None:intergenic 40.0%
! TACTTGCTCCTTTTCTGCTT+TGG + tig0020524:35504-35523 None:intergenic 40.0%
!! ATCTGAGGCAGTATTTTCTC+AGG + tig0020524:35596-35615 None:intergenic 40.0%
TCAACAGAACCCTTGTTACA+TGG - tig0020524:35820-35839 Msa1382740:CDS 40.0%
CAACAGAACCCTTGTTACAT+GGG - tig0020524:35821-35840 Msa1382740:CDS 40.0%
AACAGAACCCTTGTTACATG+GGG - tig0020524:35822-35841 Msa1382740:CDS 40.0%
TTTCAGTCCCCATGTAACAA+GGG + tig0020524:35832-35851 None:intergenic 40.0%
!!! GACTGAAACCAGTTTTGTTC+CGG - tig0020524:35844-35863 Msa1382740:CDS 40.0%
!! GCTATGTTTTCTGTCACTTC+CGG + tig0020524:35866-35885 None:intergenic 40.0%
GAGAAGAGACTAAATGAGCT+TGG - tig0020524:35899-35918 Msa1382740:intron 40.0%
! TCAACAATGACGCTTTTCAC+TGG - tig0020524:36078-36097 Msa1382740:intron 40.0%
!! TTGGTTTGTTGGGATTGCAA+TGG - tig0020524:36185-36204 Msa1382740:intron 40.0%
ATTATCAGGGTTCCATTCTC+AGG + tig0020524:36304-36323 None:intergenic 40.0%
TAGAACAGTCGTTTACCTCA+TGG + tig0020524:36338-36357 None:intergenic 40.0%
!! CAACTGGTTCTCTGTACTTT+TGG - tig0020524:36658-36677 Msa1382740:intron 40.0%
ACATTTAGCTGGTCCGAAAT+GGG - tig0020524:36686-36705 Msa1382740:intron 40.0%
GAAGAAAATGGTCCCCATTT+CGG + tig0020524:36702-36721 None:intergenic 40.0%
! AATGGGGACCATTTTCTTCA+TGG - tig0020524:36703-36722 Msa1382740:CDS 40.0%
GCACAACACCATGAAGAAAA+TGG + tig0020524:36714-36733 None:intergenic 40.0%
!! TTTCTTCATGGTGTTGTGCT+TGG - tig0020524:36715-36734 Msa1382740:CDS 40.0%
!! GTAGGTCTTATTGCTGGAAT+CGG - tig0020524:36747-36766 Msa1382740:CDS 40.0%
! TTCGTGTATGTTTGGATTGG+TGG - tig0020524:36798-36817 Msa1382740:intron 40.0%
!! TGTATGTTTGGATTGGTGGT+GGG - tig0020524:36802-36821 Msa1382740:intron 40.0%
GGGTTTGATAAAAATCACGG+TGG - tig0020524:36822-36841 Msa1382740:intron 40.0%
GCAAAATCTCGATGGTTCAT+CGG - tig0020524:36886-36905 Msa1382740:intron 40.0%
CAAAATCTCGATGGTTCATC+GGG - tig0020524:36887-36906 Msa1382740:intron 40.0%
TATTTGTGCCTGTTGAGAGT+AGG + tig0020524:37031-37050 None:intergenic 40.0%
CTCTCAACAGGCACAAATAA+AGG - tig0020524:37032-37051 Msa1382740:intron 40.0%
TCAACAGGCACAAATAAAGG+CGG - tig0020524:37035-37054 Msa1382740:intron 40.0%
! ACATTGGCCTCACTGTTATA+TGG - tig0020524:37096-37115 Msa1382740:intron 40.0%
! CATTGGCCTCACTGTTATAT+GGG - tig0020524:37097-37116 Msa1382740:intron 40.0%
GAGCAATCTTATGGCAGTTA+TGG + tig0020524:37210-37229 None:intergenic 40.0%
GGGAGCAATTAGATAAGGAT+CGG + tig0020524:37365-37384 None:intergenic 40.0%
CAAGTGGGAGCAATTAGATA+AGG + tig0020524:37370-37389 None:intergenic 40.0%
! CACACTCAATTTTCTGTGTC+AGG - tig0020524:37504-37523 Msa1382740:CDS 40.0%
TTTCTGTGTCAGGTTATTGG+TGG - tig0020524:37514-37533 Msa1382740:CDS 40.0%
GATAGTGATACTGTTACCTC+TGG - tig0020524:37543-37562 Msa1382740:CDS 40.0%
CATATCCATAGAGGGAATAC+TGG + tig0020524:37681-37700 None:intergenic 40.0%
TGCAGCATCATATCCATAGA+GGG + tig0020524:37689-37708 None:intergenic 40.0%
! ACTAAAGGTGCAGACAAGAA+TGG - tig0020524:37727-37746 Msa1382740:intron 40.0%
AATGGACCCATAGCAATACT+TGG - tig0020524:37745-37764 Msa1382740:intron 40.0%
! ATTTGGATGGGCTTACATCT+TGG - tig0020524:37789-37808 Msa1382740:intron 40.0%
!! TAGAACTTTGGTTGGCCTAA+TGG + tig0020524:38003-38022 None:intergenic 40.0%
! GCATCATAGAGTATTTGTGC+TGG + tig0020524:38246-38265 None:intergenic 40.0%
GGAAGATATCACAATTCTGC+TGG - tig0020524:38273-38292 Msa1382740:intron 40.0%
TTTAGTACTTACCACTCTGG+CGG + tig0020524:38367-38386 None:intergenic 40.0%
AGGTTTAGTACTTACCACTC+TGG + tig0020524:38370-38389 None:intergenic 40.0%
AAAATGCCTCCTAACTAGTG+TGG - tig0020524:38603-38622 Msa1382740:intron 40.0%
TGAGATACACCACACTAGTT+AGG + tig0020524:38615-38634 None:intergenic 40.0%
GAAACTGCATCCAAAACACA+AGG - tig0020524:38702-38721 Msa1382740:intron 40.0%
AGGTTCCTACAAATGCTGTA+TGG - tig0020524:38722-38741 Msa1382740:intron 40.0%
CTTCAATAGCCACAATTGGA+TGG - tig0020524:38815-38834 Msa1382740:intron 40.0%
! CAAGCCTGGACCTTTTTATT+TGG - tig0020524:38894-38913 Msa1382740:intron 40.0%
TTGCCCAAATAAAAAGGTCC+AGG + tig0020524:38901-38920 None:intergenic 40.0%
!! TGGACCTTTTTATTTGGGCA+AGG - tig0020524:38900-38919 Msa1382740:intron 40.0%
CTTGCCTTGCCCAAATAAAA+AGG + tig0020524:38907-38926 None:intergenic 40.0%
TAGGATAAAGAGTTGGCAAC+AGG + tig0020524:38984-39003 None:intergenic 40.0%
!! TTATGCACCTGTTGCTTTAG+GGG - tig0020524:39023-39042 Msa1382740:intron 40.0%
TGGGTCTAATAATGCTTTGG+TGG - tig0020524:39052-39071 Msa1382740:intron 40.0%
GGGTCTAATAATGCTTTGGT+GGG - tig0020524:39053-39072 Msa1382740:intron 40.0%
TGAGCATCAATGTTCCTAAC+TGG + tig0020524:39108-39127 None:intergenic 40.0%
! TTCTATACGGGGCTTTTGCA+AGG - tig0020524:34335-34354 Msa1382740:CDS 45.0%
GAAGAGATAGGTCAGCATCA+AGG - tig0020524:34531-34550 Msa1382740:CDS 45.0%
! GCTCTGCTGCATCTTTTTCT+TGG + tig0020524:34559-34578 None:intergenic 45.0%
GGCCATCATAGTTGGAACTT+TGG - tig0020524:34642-34661 Msa1382740:CDS 45.0%
GGTACAGGATTATCCTTCCT+AGG + tig0020524:34699-34718 None:intergenic 45.0%
! GCTGTTGTTCCGTTGCATTT+TGG + tig0020524:34753-34772 None:intergenic 45.0%
ATCCTCACTACTTATACCGC+AGG - tig0020524:35213-35232 Msa1382740:CDS 45.0%
AACCTGCGGTATAAGTAGTG+AGG + tig0020524:35218-35237 None:intergenic 45.0%
GTTTCAGTCCCCATGTAACA+AGG + tig0020524:35833-35852 None:intergenic 45.0%
! TGTCACTTCCGGAACAAAAC+TGG + tig0020524:35855-35874 None:intergenic 45.0%
ACTGGAATCACACCTCTGTA+TGG - tig0020524:36096-36115 Msa1382740:intron 45.0%
AGAAGGCTAGAACCATACAG+AGG + tig0020524:36111-36130 None:intergenic 45.0%
ATCCCCAAACAAGACTTGCA+GGG + tig0020524:36143-36162 None:intergenic 45.0%
!! TGCAAGTCTTGTTTGGGGAT+GGG - tig0020524:36143-36162 Msa1382740:intron 45.0%
! TTTTGTCCGGTTCCTGAGAA+TGG - tig0020524:36289-36308 Msa1382740:CDS 45.0%
GGTAAACGACTGTTCTAGTC+AGG - tig0020524:36341-36360 Msa1382740:CDS 45.0%
!! TTCACTGATTCATGTGCAGC+AGG + tig0020524:36597-36616 None:intergenic 45.0%
! TTTTGGGCTGCACATTTAGC+TGG - tig0020524:36675-36694 Msa1382740:intron 45.0%
CACATTTAGCTGGTCCGAAA+TGG - tig0020524:36685-36704 Msa1382740:intron 45.0%
CATTTAGCTGGTCCGAAATG+GGG - tig0020524:36687-36706 Msa1382740:intron 45.0%
!! GAGACTGTAGGTCTTATTGC+TGG - tig0020524:36741-36760 Msa1382740:CDS 45.0%
TATTGCTGGAATCGGTACTC+AGG - tig0020524:36755-36774 Msa1382740:CDS 45.0%
! GTACTCAGGTAAGTGGACTT+TGG - tig0020524:36769-36788 Msa1382740:intron 45.0%
!! GTGTATGTTTGGATTGGTGG+TGG - tig0020524:36801-36820 Msa1382740:intron 45.0%
!! GAGGGTACTTTGCTCCAAAA+TGG - tig0020524:37057-37076 Msa1382740:intron 45.0%
ATGCTGCCCATATAACAGTG+AGG + tig0020524:37106-37125 None:intergenic 45.0%
! GTTCAACGGTTCTGATTGAC+TGG + tig0020524:37273-37292 None:intergenic 45.0%
! TTGCTCCCACTTGCTGATAA+CGG - tig0020524:37377-37396 Msa1382740:intron 45.0%
CTTCACCGTTATCAGCAAGT+GGG + tig0020524:37385-37404 None:intergenic 45.0%
ACTTCACCGTTATCAGCAAG+TGG + tig0020524:37386-37405 None:intergenic 45.0%
!! TTGCTGATAACGGTGAAGTG+TGG - tig0020524:37387-37406 Msa1382740:intron 45.0%
AGTGATACTGTTACCTCTGG+TGG - tig0020524:37546-37565 Msa1382740:CDS 45.0%
TGTTTAGTTAGTGCCACCAG+AGG + tig0020524:37562-37581 None:intergenic 45.0%
CTGCAGCATCATATCCATAG+AGG + tig0020524:37690-37709 None:intergenic 45.0%
GGCACTTACATTCAGCATTC+AGG - tig0020524:37810-37829 Msa1382740:intron 45.0%
GTGGCTCAATGAATCTTGCA+TGG + tig0020524:37962-37981 None:intergenic 45.0%
!! GGCCAACCAAAGTTCTAAGA+TGG - tig0020524:38006-38025 Msa1382740:intron 45.0%
GATCCAAACAATGAGACAGC+TGG - tig0020524:38210-38229 Msa1382740:intron 45.0%
TGGGGTTCATTCTTCTTTGG+TGG - tig0020524:38321-38340 Msa1382740:intron 45.0%
GATACACCACACTAGTTAGG+AGG + tig0020524:38612-38631 None:intergenic 45.0%
TATGCCCTGTCAAGGGATAA+GGG - tig0020524:38655-38674 Msa1382740:intron 45.0%
AACTCCCTTATCCCTTGACA+GGG + tig0020524:38662-38681 None:intergenic 45.0%
CAGAGCCATACAGCATTTGT+AGG + tig0020524:38730-38749 None:intergenic 45.0%
GCAGCAATCTGCATTCTTCT+TGG - tig0020524:38751-38770 Msa1382740:intron 45.0%
ATAGCCACAATTGGATGGGT+TGG - tig0020524:38820-38839 Msa1382740:intron 45.0%
AATGGTTTAAGGGGCCAGTT+AGG - tig0020524:39091-39110 Msa1382740:intron 45.0%
!! AGGCACCGGCTTGTAAGATT+TGG - tig0020524:34355-34374 Msa1382740:CDS 50.0%
GATGGAGAAATGGTCAACCG+TGG - tig0020524:34924-34943 Msa1382740:intron 50.0%
AAGTCACGGCCCATGATAGT+AGG - tig0020524:35072-35091 Msa1382740:intron 50.0%
GTGAGTGACGCATTCATGTG+TGG - tig0020524:35561-35580 Msa1382740:intron 50.0%
! GGTTCTAGCCTTCTGTATGC+AGG - tig0020524:36117-36136 Msa1382740:intron 50.0%
!! AGGCCCTGCAAGTCTTGTTT+GGG - tig0020524:36137-36156 Msa1382740:intron 50.0%
CATCCCCAAACAAGACTTGC+AGG + tig0020524:36144-36163 None:intergenic 50.0%
!! CTGCAAGTCTTGTTTGGGGA+TGG - tig0020524:36142-36161 Msa1382740:intron 50.0%
AGGGTTCCATTCTCAGGAAC+CGG + tig0020524:36298-36317 None:intergenic 50.0%
! TGTGCTTGGCTTGAGACTGT+AGG - tig0020524:36729-36748 Msa1382740:CDS 50.0%
GGAATCGGTACTCAGGTAAG+TGG - tig0020524:36762-36781 Msa1382740:CDS 50.0%
! ATGGTTGGAAAGGCGTATGC+AGG - tig0020524:36981-37000 Msa1382740:intron 50.0%
ACAGGCACAAATAAAGGCGG+AGG - tig0020524:37038-37057 Msa1382740:intron 50.0%
CAGGCACAAATAAAGGCGGA+GGG - tig0020524:37039-37058 Msa1382740:intron 50.0%
!! GTCGTCTGGTCTTGGTTCAA+CGG + tig0020524:37287-37306 None:intergenic 50.0%
AAGTGTGGTATCGTGACTGC+AGG - tig0020524:37402-37421 Msa1382740:intron 50.0%
GTGAGCCAGTATTCCCTCTA+TGG - tig0020524:37673-37692 Msa1382740:intron 50.0%
GCAAGTGACTCGATGCTATG+TGG + tig0020524:37981-38000 None:intergenic 50.0%
GCATCGAGTCACTTGCCATT+AGG - tig0020524:37985-38004 Msa1382740:intron 50.0%
GCTCCAGCTGTCTCATTGTT+TGG + tig0020524:38216-38235 None:intergenic 50.0%
TCGAATGAATCGGCCCAAAC+AGG + tig0020524:38390-38409 None:intergenic 50.0%
TTCAGGTCTATGCCCTGTCA+AGG - tig0020524:38647-38666 Msa1382740:intron 50.0%
TCAGGTCTATGCCCTGTCAA+GGG - tig0020524:38648-38667 Msa1382740:intron 50.0%
CTATGCCCTGTCAAGGGATA+AGG - tig0020524:38654-38673 Msa1382740:intron 50.0%
GAACTCCCTTATCCCTTGAC+AGG + tig0020524:38663-38682 None:intergenic 50.0%
ACCACCAACCCATCCAATTG+TGG + tig0020524:38827-38846 None:intergenic 50.0%
CCAGGCTTGAAGTTCTTCTC+AGG + tig0020524:38883-38902 None:intergenic 50.0%
CCTGAGAAGAACTTCAAGCC+TGG - tig0020524:38880-38899 Msa1382740:intron 50.0%
AAACCGACCCCTAAAGCAAC+AGG + tig0020524:39033-39052 None:intergenic 50.0%
!! TGTTGCTTTAGGGGTCGGTT+TGG - tig0020524:39032-39051 Msa1382740:intron 50.0%
!! GTTGCTTTAGGGGTCGGTTT+GGG - tig0020524:39033-39052 Msa1382740:intron 50.0%
TTGCAGGGCCTGCATACAGA+AGG + tig0020524:36128-36147 None:intergenic 55.0%
!! CAGGCCCTGCAAGTCTTGTT+TGG - tig0020524:36136-36155 Msa1382740:intron 55.0%
!! GGCCCTGCAAGTCTTGTTTG+GGG - tig0020524:36138-36157 Msa1382740:intron 55.0%
!! GCCACAATTGGATGGGTTGG+TGG - tig0020524:38823-38842 Msa1382740:intron 55.0%
!! GCACCTGTTGCTTTAGGGGT+CGG - tig0020524:39027-39046 Msa1382740:intron 55.0%
! ACGGGGCTTTTGCAAGGCAC+CGG - tig0020524:34341-34360 Msa1382740:CDS 60.0%
! CACTACAAGTGCCGCCAGAG+TGG - tig0020524:38353-38372 Msa1382740:intron 60.0%
Chromosome Type Strat End Strand Name
tig0020524 gene 34298 39143 34298 ID=Msa1382740;Name=Msa1382740
tig0020524 mRNA 34298 39143 34298 ID=Msa1382740-mRNA-1;Parent=Msa1382740;Name=Msa1382740-mRNA-1;_AED=0.23;_eAED=0.24;_QI=0|0|0|1|0.62|0.66|9|0|509
tig0020524 exon 39125 39143 39125 ID=Msa1382740-mRNA-1:exon:8346;Parent=Msa1382740-mRNA-1
tig0020524 exon 37492 37637 37492 ID=Msa1382740-mRNA-1:exon:8345;Parent=Msa1382740-mRNA-1
tig0020524 exon 37211 37393 37211 ID=Msa1382740-mRNA-1:exon:8344;Parent=Msa1382740-mRNA-1
tig0020524 exon 36695 36784 36695 ID=Msa1382740-mRNA-1:exon:8343;Parent=Msa1382740-mRNA-1
tig0020524 exon 36257 36448 36257 ID=Msa1382740-mRNA-1:exon:8342;Parent=Msa1382740-mRNA-1
tig0020524 exon 35769 35915 35769 ID=Msa1382740-mRNA-1:exon:8341;Parent=Msa1382740-mRNA-1
tig0020524 exon 35610 35759 35610 ID=Msa1382740-mRNA-1:exon:8340;Parent=Msa1382740-mRNA-1
tig0020524 exon 35139 35249 35139 ID=Msa1382740-mRNA-1:exon:8339;Parent=Msa1382740-mRNA-1
tig0020524 exon 34298 34789 34298 ID=Msa1382740-mRNA-1:exon:8338;Parent=Msa1382740-mRNA-1
tig0020524 CDS 39125 39143 39125 ID=Msa1382740-mRNA-1:cds;Parent=Msa1382740-mRNA-1
tig0020524 CDS 37492 37637 37492 ID=Msa1382740-mRNA-1:cds;Parent=Msa1382740-mRNA-1
tig0020524 CDS 37211 37393 37211 ID=Msa1382740-mRNA-1:cds;Parent=Msa1382740-mRNA-1
tig0020524 CDS 36695 36784 36695 ID=Msa1382740-mRNA-1:cds;Parent=Msa1382740-mRNA-1
tig0020524 CDS 36257 36448 36257 ID=Msa1382740-mRNA-1:cds;Parent=Msa1382740-mRNA-1
tig0020524 CDS 35769 35915 35769 ID=Msa1382740-mRNA-1:cds;Parent=Msa1382740-mRNA-1
tig0020524 CDS 35610 35759 35610 ID=Msa1382740-mRNA-1:cds;Parent=Msa1382740-mRNA-1
tig0020524 CDS 35139 35249 35139 ID=Msa1382740-mRNA-1:cds;Parent=Msa1382740-mRNA-1
tig0020524 CDS 34298 34789 34298 ID=Msa1382740-mRNA-1:cds;Parent=Msa1382740-mRNA-1
Gene Sequence

>Msa1382740

ATGAATTCATCCAATAGTGATTACGTAAGAACTTCTCAACAGAACCCTTGTTACATGGGGACTGAAACCAGTTTTGTTCCGGAAGTGACAGAAAACATAGCTATGGATTCAGCAGAGAAGAGACTAAATGAGCTTGGTTACAAGCAAGAACTAAGAAGAGAAATGACTATGTTCAAAACTCTTGCGATAGCATTTTCAACAATGACGCTTTTCACTGGAATCACACCTCTGTATGGTTCTAGCCTTCTGTATGCAGGCCCTGCAAGTCTTGTTTGGGGATGGGTAGTTGTTTGTTTCTTCACTTGGTTTGTTGGGATTGCAATGGCTGAAATATGTTCATCTTTTCCGACAACTGGTTCTCTGTACTTTTGGGCTGCACATTTAGCTGGTCCGAAATGGGGACCATTTTCTTCATGGTGTTGTGCTTGGCTTGAGACTGCGTATGCAGGATCACAAACATTGCAGAGTTTAATCCTACTCTCAACAGGCACAAATAAAGGCGGAGGGTACTTTGCTCCAAAATGGCTATTCTTATGTATGTACATTGGCCTCACTGTTATATGGGCAGCATTAAACACATTTGCATTAGAAGTCATTGCCTTCATCGATATAATTTCAATATGGTGGCAGGTTATTGGTGGAGCAGTGATAGTGATACTGTTACCTCTGGTGGCACTAACTAAACAATCAGCTACATATGTATTCACAAACTTTGAATTAGCATCTGATACAACAGGAGTTTCAAGCAAACCATATGCAGTGATTCTATCATTTCTTTATTCCCTCTATGGATATGATGCTGCAGCACATTTAACTGAAGAAACTAAAGGTGCAGACAAGAATGGACCCATAGCAATACTTGGTAGTATTGGCATCATTTCAGTATTTGGATGGGCTTACATCTTGGCACTTACATTCAGCATTCAGGATTTTGGTTACCTTTATGATCCAAACAATGAGACAGCTGGAGCATTTGTGCCAGCACAAATACTCTATGATGCATTCCATGGAAGATATCACAATTCTGCTGGAGCAATAGTCTATGCCCTGTCAAGGGATAAGGGAGTTCCATTTTCATTCTTATGGAAGAAACTGCATCCAAAACACAAGGTTCCTACAAATGCTGTATGGCTCTGTGCAGCAATCTGCATTCTTCTTGGTCTACCAATTTTGAAGGTGAATGTAGTCTTTACTGCAATAACTTCAATAGCCACAATTGGATGGGTTGGTGGTTATGCAGTTCCAATCTTTGCAAGAATGGTGATGCCTGAGAAGAACTTCAAGCCTGGACCTTTTTATTTGGGCAAGGCAAGCAGACCAATTTGCTTGATAGCATTTCTATGGATTTGTTACACATGTTCTGTATTCCTGTTGCCAACTCTTTATCCTATTACATGGGATACTTTCAATTATGCACCTGTTGCTTTAGGGGTCGGTTTGGGTCTAATAATGCTTTGGTGGGTATTAGATGCAAGAAAATGGTTTAAGGGGCCAGTTAGGAACATTGATGCTCAAAATGACAAAGTATAA

Protein sequence

>Msa1382740

MNSSNSDYVRTSQQNPCYMGTETSFVPEVTENIAMDSAEKRLNELGYKQELRREMTMFKTLAIAFSTMTLFTGITPLYGSSLLYAGPASLVWGWVVVCFFTWFVGIAMAEICSSFPTTGSLYFWAAHLAGPKWGPFSSWCCAWLETAYAGSQTLQSLILLSTGTNKGGGYFAPKWLFLCMYIGLTVIWAALNTFALEVIAFIDIISIWWQVIGGAVIVILLPLVALTKQSATYVFTNFELASDTTGVSSKPYAVILSFLYSLYGYDAAAHLTEETKGADKNGPIAILGSIGIISVFGWAYILALTFSIQDFGYLYDPNNETAGAFVPAQILYDAFHGRYHNSAGAIVYALSRDKGVPFSFLWKKLHPKHKVPTNAVWLCAAICILLGLPILKVNVVFTAITSIATIGWVGGYAVPIFARMVMPEKNFKPGPFYLGKASRPICLIAFLWICYTCSVFLLPTLYPITWDTFNYAPVALGVGLGLIMLWWVLDARKWFKGPVRNIDAQNDKV*