AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0399720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0399720 MtrunA17_Chr3g0087781 92.553 282 12 3 1 277 1 278 9.80e-177 488
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0399720 AT5G26880.1 62.782 266 95 2 11 276 1 262 9.13e-118 338

Find 100 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGCCCTTGATCAGGTTTC+AGG 0.201095 3_2:-23255186 None:intergenic
CAACTAAACTACATGTTTGT+TGG 0.299540 3_2:+23255422 Msa0399720:three_prime_UTR
TTGTTAAAATTCACGATTCT+TGG 0.300968 3_2:+23253429 Msa0399720:CDS
CTTGTCTCCTCGTAATGTTT+TGG 0.317162 3_2:+23255500 Msa0399720:three_prime_UTR
CAAGGGCACAGTCCTAGTTT+AGG 0.320391 3_2:+23255199 Msa0399720:three_prime_UTR
CTGTTGGACTACACTTAGTT+GGG 0.340052 3_2:+23252228 Msa0399720:CDS
AGCTTTAAGAAGAATTAATC+TGG 0.342620 3_2:+23255223 Msa0399720:three_prime_UTR
GGAAAGGGGAGGAAAGGAAA+TGG 0.349405 3_2:-23249438 None:intergenic
GGTAGTGAGAGAAGAGGAAA+GGG 0.350632 3_2:-23249453 None:intergenic
TTGCAATCTAACAACGCTTC+AGG 0.351137 3_2:-23254878 None:intergenic
CAATCCAGCTCGCTTTAGTT+TGG 0.371247 3_2:-23252587 None:intergenic
TGTTGTTCTTGGTAGATTCC+AGG 0.384664 3_2:+23252167 Msa0399720:intron
GCAATGCAGCCAGTGTTTCC+TGG 0.391133 3_2:-23252185 None:intergenic
GCCAGTTCAACTAGTTGAAT+CGG 0.399403 3_2:+23255302 Msa0399720:three_prime_UTR
AAGGGCACAGTCCTAGTTTA+GGG 0.400848 3_2:+23255200 Msa0399720:three_prime_UTR
GATTGCAAAACTGAACCATT+TGG 0.401086 3_2:+23254893 Msa0399720:CDS
ACACTGCAGTCTGGTTGAAC+TGG 0.401368 3_2:+23255361 Msa0399720:three_prime_UTR
AAGGGGAGGAAAGGAAATGG+AGG 0.410507 3_2:-23249435 None:intergenic
CTGACATATGTTTCAACCAT+TGG 0.414032 3_2:-23254935 None:intergenic
AGTTGTCCTTGTTTCACCTC+AGG 0.414733 3_2:+23249804 Msa0399720:CDS
GTTTGGATCGAAAATGAAAA+GGG 0.415927 3_2:-23249367 None:intergenic
TGTTAAAATTCACGATTCTT+GGG 0.421970 3_2:+23253430 Msa0399720:CDS
CCCGATTCAACTAGTTGAAC+TGG 0.424180 3_2:-23255303 None:intergenic
CAAACTAAAGCGAGCTGGAT+TGG 0.426885 3_2:+23252588 Msa0399720:CDS
TTATTTGGTGCTGAAACTAC+TGG 0.427265 3_2:+23254848 Msa0399720:CDS
CTAGGACTGTGCCCTTGATC+AGG 0.427522 3_2:-23255193 None:intergenic
TCATCCACCTTATATCCTAA+TGG 0.433769 3_2:-23252562 None:intergenic
AGTCTCAAGGCAGCAGGAAA+TGG 0.436330 3_2:-23249311 None:intergenic
CTGCTGCTGCTGATAGGTTG+AGG 0.439569 3_2:-23249340 None:intergenic
TGCTGCTGCTGATAGGTTGA+GGG 0.443253 3_2:-23249339 None:intergenic
GGTTTGCTGCTGCTGCTGAT+AGG 0.443334 3_2:-23249346 None:intergenic
GCTGTTGGACTACACTTAGT+TGG 0.447539 3_2:+23252227 Msa0399720:CDS
TCTTTCCGTCTATCCGATGC+AGG 0.447846 3_2:-23249256 None:intergenic
AGCGAGCTGGATTGGACTAC+TGG 0.454007 3_2:+23252596 Msa0399720:CDS
CAACTAGTTGAATCGGGAAC+TGG 0.456728 3_2:+23255309 Msa0399720:three_prime_UTR
AGTTTGGATCGAAAATGAAA+AGG 0.457319 3_2:-23249368 None:intergenic
CTCTCCCTGCATCGGATAGA+CGG 0.457964 3_2:+23249251 Msa0399720:five_prime_UTR
AGAAGAGGAAAGGGGAGGAA+AGG 0.459334 3_2:-23249444 None:intergenic
TGACATATGTTTCAACCATT+GGG 0.461962 3_2:-23254934 None:intergenic
ACTAGTTGAACTGGCCAGTT+CGG 0.467547 3_2:-23255294 None:intergenic
AGGAGACAAGGTCATTTATG+AGG 0.467739 3_2:-23255487 None:intergenic
ATCATGTTTACACTGCAGTC+TGG 0.474172 3_2:+23255352 Msa0399720:three_prime_UTR
TTCTTAAAGCTCCCTAAACT+AGG 0.490625 3_2:-23255211 None:intergenic
TGGTAGTGAGAGAAGAGGAA+AGG 0.500507 3_2:-23249454 None:intergenic
TTGCCACATGGTGTTGGAGA+GGG 0.501044 3_2:+23249748 Msa0399720:CDS
GGAAAGGAAATGGAGGGAAA+AGG 0.504437 3_2:-23249428 None:intergenic
TGTCAGGTGTTTGAATCTAT+CGG 0.514716 3_2:+23254952 Msa0399720:CDS
TTGATAGTTCCACCACCAAA+TGG 0.517426 3_2:-23254908 None:intergenic
AAAATTCACGATTCTTGGGA+AGG 0.519743 3_2:+23253434 Msa0399720:CDS
TGGTACAGGAAGGTGAAAAG+AGG 0.523032 3_2:+23253556 Msa0399720:intron
GGTAGTTTGCCACATGGTGT+TGG 0.523607 3_2:+23249742 Msa0399720:CDS
CATGACCTGAAACCTGATCA+AGG 0.526495 3_2:+23255181 Msa0399720:three_prime_UTR
GAGAATGAGATGAAGAAGGA+AGG 0.528615 3_2:+23249721 Msa0399720:CDS
GAACTGGCGAATTCGTCGGT+TGG 0.530844 3_2:+23255325 Msa0399720:three_prime_UTR
CCAGTTCAACTAGTTGAATC+GGG 0.533116 3_2:+23255303 Msa0399720:three_prime_UTR
TTGAATCTATCGGTTAGTGT+TGG 0.538716 3_2:+23254962 Msa0399720:CDS
CAATGGTTGAAACATATGTC+AGG 0.541341 3_2:+23254936 Msa0399720:CDS
ATTACTGGTAGTGAGAGAAG+AGG 0.542591 3_2:-23249459 None:intergenic
GATTTCAGTCTCAAGGCAGC+AGG 0.543360 3_2:-23249317 None:intergenic
ACATGTGCAGCATCAGCTGT+TGG 0.543758 3_2:+23252212 Msa0399720:CDS
ATGGAGGGAAAAGGTGAGGT+GGG 0.544197 3_2:-23249419 None:intergenic
TGCCACATGGTGTTGGAGAG+GGG 0.544512 3_2:+23249749 Msa0399720:CDS
GTTGCTAGCATTTACAAAGA+GGG 0.563609 3_2:+23253578 Msa0399720:CDS
GCTTTAAGAAGAATTAATCT+GGG 0.564005 3_2:+23255224 Msa0399720:three_prime_UTR
GTTGAGGGATTTCAGTCTCA+AGG 0.564510 3_2:-23249324 None:intergenic
CGGTTTAACCACTTCAATCG+TGG 0.573847 3_2:-23255390 None:intergenic
CAATCTAACAACGCTTCAGG+TGG 0.577296 3_2:-23254875 None:intergenic
TGGTAGATTCCAGGAAACAC+TGG 0.577588 3_2:+23252176 Msa0399720:intron
TGCTGAGAATGAGATGAAGA+AGG 0.587042 3_2:+23249717 Msa0399720:CDS
GATACCAAACTAAAGCGAGC+TGG 0.587642 3_2:+23252583 Msa0399720:CDS
GCAACAGCATTGTGAAGCGA+TGG 0.589187 3_2:+23249283 Msa0399720:exon
GGTTGCTAGCATTTACAAAG+AGG 0.596965 3_2:+23253577 Msa0399720:CDS
AATGGAGGGAAAAGGTGAGG+TGG 0.597678 3_2:-23249420 None:intergenic
ACACTCGTCTCTCCCTGCAT+CGG 0.601176 3_2:+23249243 Msa0399720:five_prime_UTR
CAAAACATTACGAGGAGACA+AGG 0.603854 3_2:-23255499 None:intergenic
GTGAGAGAAGAGGAAAGGGG+AGG 0.603863 3_2:-23249449 None:intergenic
TCGGGAACTGGCGAATTCGT+CGG 0.606225 3_2:+23255321 Msa0399720:three_prime_UTR
AGGGGAGGAAAGGAAATGGA+GGG 0.607057 3_2:-23249434 None:intergenic
TTGCTAGCATTTACAAAGAG+GGG 0.609702 3_2:+23253579 Msa0399720:CDS
GTTATACCTGAGGTGAAACA+AGG 0.614169 3_2:-23249810 None:intergenic
TGTTGGACTACACTTAGTTG+GGG 0.616424 3_2:+23252229 Msa0399720:CDS
GGAGACAAGGTCATTTATGA+GGG 0.617327 3_2:-23255486 None:intergenic
TTTGCCACATGGTGTTGGAG+AGG 0.620773 3_2:+23249747 Msa0399720:CDS
TCAGCCATTAGGATATAAGG+TGG 0.622589 3_2:+23252558 Msa0399720:intron
TGCAAAACTGAACCATTTGG+TGG 0.624579 3_2:+23254896 Msa0399720:CDS
CTTTCCGTCTATCCGATGCA+GGG 0.626228 3_2:-23249255 None:intergenic
GTAGTGAGAGAAGAGGAAAG+GGG 0.629450 3_2:-23249452 None:intergenic
GGAAATGGAGGGAAAAGGTG+AGG 0.639144 3_2:-23249423 None:intergenic
ATGACCTGAAACCTGATCAA+GGG 0.642247 3_2:+23255182 Msa0399720:three_prime_UTR
GTATCAACACATGTTTCAGA+AGG 0.644134 3_2:-23255037 None:intergenic
GGTTTGTACCACGATTGAAG+TGG 0.648095 3_2:+23255382 Msa0399720:three_prime_UTR
AAAACTGAACCATTTGGTGG+TGG 0.653381 3_2:+23254899 Msa0399720:CDS
TAGTTTAGTTGAATCAACCA+CGG 0.662589 3_2:-23255410 None:intergenic
ATCCCCTCTCCAACACCATG+TGG 0.662675 3_2:-23249751 None:intergenic
GTAACCTCCAAAACATTACG+AGG 0.663670 3_2:-23255507 None:intergenic
TGAAACATGTGTTGATACTG+AGG 0.672814 3_2:+23255042 Msa0399720:CDS
TGGAACTATCAAGATCCCAA+TGG 0.684890 3_2:+23254919 Msa0399720:CDS
CGATTGAAGTGGTTAAACCG+TGG 0.689531 3_2:+23255393 Msa0399720:three_prime_UTR
AAGGAAGGTAGTTTGCCACA+TGG 0.704326 3_2:+23249736 Msa0399720:CDS
AACATGTGTTGATACTGAGG+AGG 0.739355 3_2:+23255045 Msa0399720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATGAATATTTCAAAA+AGG + chr3_2:23249988-23250007 Msa0399720:intron 10.0%
!!! CTAATAATTATATTTTTTGT+TGG + chr3_2:23251438-23251457 Msa0399720:intron 10.0%
!!! AGTTTTTTTATGAATATTAT+CGG + chr3_2:23251600-23251619 Msa0399720:intron 10.0%
!!! TTTAGTTTTTGTTTTTTTAA+CGG + chr3_2:23252892-23252911 Msa0399720:intron 10.0%
!!! TTTTTTTTGAAAACTTTGTA+TGG + chr3_2:23249563-23249582 Msa0399720:intron 15.0%
!! TAATTAAAACAACAAAATCA+AGG - chr3_2:23249631-23249650 None:intergenic 15.0%
!!! TTGTTTTGTTTTTGTTTAAA+TGG + chr3_2:23249661-23249680 Msa0399720:intron 15.0%
!! ATAGTTATTCGTATATATTT+CGG - chr3_2:23249861-23249880 None:intergenic 15.0%
!!! ATAGTAACTTGTTAAAATAT+TGG + chr3_2:23250095-23250114 Msa0399720:intron 15.0%
!!! TAGTAACTTGTTAAAATATT+GGG + chr3_2:23250096-23250115 Msa0399720:intron 15.0%
!! AGATTATGAATATTTCAAAA+AGG - chr3_2:23250142-23250161 None:intergenic 15.0%
!!! TTTGAAATATTCATAATCTT+AGG + chr3_2:23250143-23250162 Msa0399720:intron 15.0%
!! TTGAAATATTCATAATCTTA+GGG + chr3_2:23250144-23250163 Msa0399720:intron 15.0%
!!! TTGTAATTTTTATATGCTTA+GGG - chr3_2:23250225-23250244 None:intergenic 15.0%
!!! TTTGTAATTTTTATATGCTT+AGG - chr3_2:23250226-23250245 None:intergenic 15.0%
!!! ACATCTTTGAATTTATATTT+TGG + chr3_2:23250576-23250595 Msa0399720:intron 15.0%
!!! TTTTGTATTTTTAGAACTAT+TGG + chr3_2:23250711-23250730 Msa0399720:intron 15.0%
!!! TTTGTATTTTTAGAACTATT+GGG + chr3_2:23250712-23250731 Msa0399720:intron 15.0%
!! TTGTAATTATTATATTGAGA+GGG + chr3_2:23251170-23251189 Msa0399720:intron 15.0%
!!! AAAAATCTAAATCTTTTTAC+TGG + chr3_2:23254037-23254056 Msa0399720:intron 15.0%
!!! TGTCTAATATTTTCTTATTT+AGG + chr3_2:23254095-23254114 Msa0399720:intron 15.0%
!!! GTCTAATATTTTCTTATTTA+GGG + chr3_2:23254096-23254115 Msa0399720:intron 15.0%
!! CATATATTCAAGTATTCAAA+TGG - chr3_2:23249884-23249903 None:intergenic 20.0%
!!! TGTAATTTTTATATGCTTAG+GGG - chr3_2:23250224-23250243 None:intergenic 20.0%
!! TTGTCTTATGTTAGTTAATT+TGG + chr3_2:23250290-23250309 Msa0399720:intron 20.0%
!!! TTATATTTTGGTAGTTTGTT+TGG + chr3_2:23250588-23250607 Msa0399720:intron 20.0%
!!! AATTTAGTCTTTGAAATTGT+AGG + chr3_2:23250829-23250848 Msa0399720:intron 20.0%
!!! CAAATGAAAATTTTGATTCT+TGG + chr3_2:23251106-23251125 Msa0399720:intron 20.0%
!!! AAAATTTTGATTCTTGGTTA+AGG + chr3_2:23251112-23251131 Msa0399720:intron 20.0%
!! GTTGTAATTATTATATTGAG+AGG + chr3_2:23251169-23251188 Msa0399720:intron 20.0%
!!! AAGATTTTAGATTATCTGTT+GGG - chr3_2:23251338-23251357 None:intergenic 20.0%
!!! TCATAATATTGGTTATTCTT+TGG - chr3_2:23251874-23251893 None:intergenic 20.0%
!!! AAAACTGTATATAGTTTTTG+AGG + chr3_2:23251914-23251933 Msa0399720:intron 20.0%
!! TTTGATATTTATGTTGTTCT+TGG + chr3_2:23252156-23252175 Msa0399720:intron 20.0%
!! AAGAGATACAAATGAAATAA+AGG - chr3_2:23252658-23252677 None:intergenic 20.0%
!!! TTTTTTAACGGCTTAATATT+CGG + chr3_2:23252904-23252923 Msa0399720:intron 20.0%
!! TGGAAACAAATATAAAACAA+CGG - chr3_2:23253384-23253403 None:intergenic 20.0%
!! AACTGTACATATCTATTATT+TGG + chr3_2:23253536-23253555 Msa0399720:intron 20.0%
!! TAAATGACATAATAAGAGAT+AGG - chr3_2:23253683-23253702 None:intergenic 20.0%
!! TTCAACAGAAAATAAAATAG+TGG - chr3_2:23253722-23253741 None:intergenic 20.0%
!!! CTTAATTCTCTTTATTTTGA+TGG - chr3_2:23253980-23253999 None:intergenic 20.0%
!! GAGAATTAAGCATTATATTT+CGG + chr3_2:23253990-23254009 Msa0399720:intron 20.0%
!!! TTCACTTTTAATTACAAGAT+TGG - chr3_2:23254347-23254366 None:intergenic 20.0%
!!! TTTAATTACAAGAGTTTGTT+TGG - chr3_2:23254391-23254410 None:intergenic 20.0%
!! TACTTACTTATTGTGTTAAA+AGG + chr3_2:23254713-23254732 Msa0399720:intron 20.0%
!!! TTTCCTTATATTGTTTGTTT+TGG - chr3_2:23254756-23254775 None:intergenic 20.0%
!! CAATATAAGGAAAATTTGAA+TGG + chr3_2:23254763-23254782 Msa0399720:intron 20.0%
!!! TGTTTAAATGGTGTTATAGA+TGG + chr3_2:23249673-23249692 Msa0399720:intron 25.0%
! ATTATAGAATGTTATACCTG+AGG - chr3_2:23249823-23249842 None:intergenic 25.0%
! GGTAACATTTAACAAAGTTA+GGG - chr3_2:23250015-23250034 None:intergenic 25.0%
! ATTCCTTGAAGAACTAATAT+CGG - chr3_2:23250036-23250055 None:intergenic 25.0%
! GTGTTCTGTTATTAATTTCA+TGG - chr3_2:23250348-23250367 None:intergenic 25.0%
!!! TACAGTTTTAGAGACTAAAT+TGG + chr3_2:23250914-23250933 Msa0399720:intron 25.0%
! TAATTATTATATTGAGAGGG+CGG + chr3_2:23251173-23251192 Msa0399720:intron 25.0%
!! GAAGATTTTAGATTATCTGT+TGG - chr3_2:23251339-23251358 None:intergenic 25.0%
! TGTGAATGTATACATTCTTA+AGG + chr3_2:23251462-23251481 Msa0399720:intron 25.0%
!! AAGTTGTCATATTGATTAAC+TGG + chr3_2:23251485-23251504 Msa0399720:intron 25.0%
!! AGTTGTCATATTGATTAACT+GGG + chr3_2:23251486-23251505 Msa0399720:intron 25.0%
! CTGTATTAAAATTGAGTACA+AGG + chr3_2:23251940-23251959 Msa0399720:intron 25.0%
! AAGAACGAAATAAGTAAAAG+TGG + chr3_2:23251979-23251998 Msa0399720:intron 25.0%
! AGAACGAAATAAGTAAAAGT+GGG + chr3_2:23251980-23251999 Msa0399720:intron 25.0%
! AAAGTAAATTTACAGTAGAG+GGG - chr3_2:23252085-23252104 None:intergenic 25.0%
! CAAAGTAAATTTACAGTAGA+GGG - chr3_2:23252086-23252105 None:intergenic 25.0%
! TAAAATCTCTCAATTACCAA+AGG + chr3_2:23252129-23252148 Msa0399720:intron 25.0%
! AAAATCTCTCAATTACCAAA+GGG + chr3_2:23252130-23252149 Msa0399720:intron 25.0%
! ATAAATATCAAAGAACCCTT+TGG - chr3_2:23252148-23252167 None:intergenic 25.0%
! TACAAAATGTTGTCAAATAG+AGG - chr3_2:23252415-23252434 None:intergenic 25.0%
!! TTGTATTTAAAAGCGTATCA+TGG + chr3_2:23252430-23252449 Msa0399720:intron 25.0%
!! ATTAAAGAAGCATATATCCA+AGG - chr3_2:23252628-23252647 None:intergenic 25.0%
!! AAATACTTTTCTACAACACA+GGG + chr3_2:23252690-23252709 Msa0399720:intron 25.0%
! ATAAATCAAACTGAACAACA+CGG + chr3_2:23252764-23252783 Msa0399720:intron 25.0%
! AAAAAAAATCGAACTGTGAT+GGG + chr3_2:23252787-23252806 Msa0399720:intron 25.0%
!!! AAAAGGTACATTTCAGTTTT+TGG + chr3_2:23253009-23253028 Msa0399720:intron 25.0%
!! CAATTTGAAATAAATCACGA+CGG - chr3_2:23253190-23253209 None:intergenic 25.0%
! CTAGATGTACTAAATTTGAA+AGG - chr3_2:23253293-23253312 None:intergenic 25.0%
! CATTCAAAACAAAAAAGATC+AGG - chr3_2:23253324-23253343 None:intergenic 25.0%
!!! CTGATCTTTTTTGTTTTGAA+TGG + chr3_2:23253322-23253341 Msa0399720:intron 25.0%
!! TATCTGCAATTTTGTGTTAA+TGG - chr3_2:23253404-23253423 None:intergenic 25.0%
! TTGTTAAAATTCACGATTCT+TGG + chr3_2:23253429-23253448 Msa0399720:CDS 25.0%
! TGTTAAAATTCACGATTCTT+GGG + chr3_2:23253430-23253449 Msa0399720:CDS 25.0%
! ACATATCTATTATTTGGTAC+AGG + chr3_2:23253542-23253561 Msa0399720:intron 25.0%
! TACTTTACATTACAAAGAGT+TGG - chr3_2:23253745-23253764 None:intergenic 25.0%
! AAAACGAAATCTACATTGTA+TGG - chr3_2:23253854-23253873 None:intergenic 25.0%
! AATACGAAATCTACATTGTA+TGG + chr3_2:23253912-23253931 Msa0399720:intron 25.0%
! TTTCGGTATAAAAAAACATG+CGG + chr3_2:23254007-23254026 Msa0399720:intron 25.0%
!!! TTTCTTATTTAGGGTCTTTT+TGG + chr3_2:23254105-23254124 Msa0399720:intron 25.0%
! AAAGTGAAGAGAAAACAATA+TGG + chr3_2:23254409-23254428 Msa0399720:intron 25.0%
!!! TTACTTTTTCTCACAAATGA+CGG + chr3_2:23254487-23254506 Msa0399720:intron 25.0%
!!! TCATGCTATTTCAAAATTGT+CGG + chr3_2:23254534-23254553 Msa0399720:intron 25.0%
! CTTCCAAAACAAACAATATA+AGG + chr3_2:23254750-23254769 Msa0399720:intron 25.0%
!!! TTTGAATGGACTATTTACTA+TGG + chr3_2:23254777-23254796 Msa0399720:intron 25.0%
!! AAAGGCGATTATCTTTTATT+TGG + chr3_2:23254833-23254852 Msa0399720:CDS 25.0%
!! TTCATTACTGAAGACATTTT+TGG + chr3_2:23255073-23255092 Msa0399720:CDS 25.0%
!! TTCATTACTGAAGACATTTT+TGG + chr3_2:23255073-23255092 Msa0399720:CDS 25.0%
!!! AGCTTTAAGAAGAATTAATC+TGG + chr3_2:23255223-23255242 Msa0399720:three_prime_UTR 25.0%
!!! GCTTTAAGAAGAATTAATCT+GGG + chr3_2:23255224-23255243 Msa0399720:three_prime_UTR 25.0%
GTTTGGATCGAAAATGAAAA+GGG - chr3_2:23249370-23249389 None:intergenic 30.0%
AGTTTGGATCGAAAATGAAA+AGG - chr3_2:23249371-23249390 None:intergenic 30.0%
TTGACGAAAAAGAAAGAGTT+TGG - chr3_2:23249387-23249406 None:intergenic 30.0%
CGTATATATTTCGGTAAATC+TGG - chr3_2:23249852-23249871 None:intergenic 30.0%
AAAGTCACAGACTAATTTGA+TGG - chr3_2:23249942-23249961 None:intergenic 30.0%
! AAATTAGTCTGTGACTTTGT+AGG + chr3_2:23249944-23249963 Msa0399720:intron 30.0%
CGGTAACATTTAACAAAGTT+AGG - chr3_2:23250016-23250035 None:intergenic 30.0%
! TTACCGATATTAGTTCTTCA+AGG + chr3_2:23250030-23250049 Msa0399720:intron 30.0%
AGGACTATGTGGATAAATTT+AGG + chr3_2:23250062-23250081 Msa0399720:intron 30.0%
ATACACTGATGAAGTAAAGT+AGG + chr3_2:23250449-23250468 Msa0399720:intron 30.0%
TACACTGATGAAGTAAAGTA+GGG + chr3_2:23250450-23250469 Msa0399720:intron 30.0%
GTCTTCTGTTAAAAATCTCA+AGG - chr3_2:23250677-23250696 None:intergenic 30.0%
! TTTTAACAGAAGACACTCTT+TGG + chr3_2:23250683-23250702 Msa0399720:intron 30.0%
TGACTGTGATTCACATATAA+AGG + chr3_2:23250743-23250762 Msa0399720:intron 30.0%
GACTGTGATTCACATATAAA+GGG + chr3_2:23250744-23250763 Msa0399720:intron 30.0%
AGCAGTTGTATGATAAATCA+TGG + chr3_2:23250957-23250976 Msa0399720:intron 30.0%
ATGATAAATCATGGAATTGC+AGG + chr3_2:23250966-23250985 Msa0399720:intron 30.0%
TGATAAATCATGGAATTGCA+GGG + chr3_2:23250967-23250986 Msa0399720:intron 30.0%
TTTGATTCTTGGTTAAGGAT+TGG + chr3_2:23251117-23251136 Msa0399720:intron 30.0%
TTGATTCTTGGTTAAGGATT+GGG + chr3_2:23251118-23251137 Msa0399720:intron 30.0%
! GTTGTCATATTGATTAACTG+GGG + chr3_2:23251487-23251506 Msa0399720:intron 30.0%
GAGAAAATAATCTCTTCTCT+TGG - chr3_2:23251726-23251745 None:intergenic 30.0%
AACTCCTTAATACGCTAAAA+AGG + chr3_2:23251839-23251858 Msa0399720:intron 30.0%
!! AAGTCCTTTTTAGCGTATTA+AGG - chr3_2:23251846-23251865 None:intergenic 30.0%
GAACGAAATAAGTAAAAGTG+GGG + chr3_2:23251981-23252000 Msa0399720:intron 30.0%
CCAAAGTAAATTTACAGTAG+AGG - chr3_2:23252087-23252106 None:intergenic 30.0%
CCTCTACTGTAAATTTACTT+TGG + chr3_2:23252084-23252103 Msa0399720:intron 30.0%
! TTGTTAAATAGAGGGTATAG+TGG - chr3_2:23252495-23252514 None:intergenic 30.0%
GAAAAGATAGAGGAATACAA+AGG - chr3_2:23252540-23252559 None:intergenic 30.0%
! TTTTCAGCCATTAGGATATA+AGG + chr3_2:23252555-23252574 Msa0399720:intron 30.0%
! GAAATACTTTTCTACAACAC+AGG + chr3_2:23252689-23252708 Msa0399720:intron 30.0%
!! TATCAGATCGATTCAGATTT+TGG - chr3_2:23252747-23252766 None:intergenic 30.0%
GAAAAAAAATCGAACTGTGA+TGG + chr3_2:23252786-23252805 Msa0399720:intron 30.0%
ATAGTCACAGAGAATTAGTT+TGG + chr3_2:23252982-23253001 Msa0399720:intron 30.0%
! AGAATTAGTTTGGTTCGAAA+AGG + chr3_2:23252992-23253011 Msa0399720:intron 30.0%
! TTTGGTAAAGCACTAAATGT+TGG + chr3_2:23253027-23253046 Msa0399720:intron 30.0%
! CCTTTTGTATTATACCAGTT+CGG + chr3_2:23253088-23253107 Msa0399720:intron 30.0%
!!! TCGTGATTATTTTTTGCAAC+AGG + chr3_2:23253460-23253479 Msa0399720:CDS 30.0%
ATTCCAGCAACTTAACATTT+AGG - chr3_2:23253496-23253515 None:intergenic 30.0%
ATCTATTATTTGGTACAGGA+AGG + chr3_2:23253546-23253565 Msa0399720:intron 30.0%
TTCGGTATAAAAAAACATGC+GGG + chr3_2:23254008-23254027 Msa0399720:intron 30.0%
TTGTAGACTTAACGAAAACA+AGG - chr3_2:23254288-23254307 None:intergenic 30.0%
GTCTACAAATCATTGATATC+AGG + chr3_2:23254300-23254319 Msa0399720:intron 30.0%
GTTTAGTCCTATTGCAATAT+TGG - chr3_2:23254440-23254459 None:intergenic 30.0%
AAACTTCGATACAATGCTTA+TGG + chr3_2:23254456-23254475 Msa0399720:intron 30.0%
TATTTCAAAATTGTCGGTGA+CGG + chr3_2:23254540-23254559 Msa0399720:intron 30.0%
!!! ATCTTTTAGTTCAGAACAGT+AGG + chr3_2:23254571-23254590 Msa0399720:intron 30.0%
TATTGCAATGGATAAAGCTT+AGG - chr3_2:23254618-23254637 None:intergenic 30.0%
TATTGCTTGCAATATTGCAA+TGG - chr3_2:23254630-23254649 None:intergenic 30.0%
GCAATATTGCAAGCAATATA+TGG + chr3_2:23254632-23254651 Msa0399720:intron 30.0%
TGACATATGTTTCAACCATT+GGG - chr3_2:23254937-23254956 None:intergenic 30.0%
TAGTTTAGTTGAATCAACCA+CGG - chr3_2:23255413-23255432 None:intergenic 30.0%
CAACTAAACTACATGTTTGT+TGG + chr3_2:23255422-23255441 Msa0399720:three_prime_UTR 30.0%
GTTCTTCAAGGAATATGCTA+AGG + chr3_2:23250042-23250061 Msa0399720:intron 35.0%
AATTTGTCCCTGACTTTGTA+GGG - chr3_2:23250185-23250204 None:intergenic 35.0%
AAATTTGTCCCTGACTTTGT+AGG - chr3_2:23250186-23250205 None:intergenic 35.0%
TACAAAGTCAGGGACAAATT+TGG + chr3_2:23250185-23250204 Msa0399720:intron 35.0%
ACTACCAAAAGACACATTTG+TGG - chr3_2:23250254-23250273 None:intergenic 35.0%
!! GTGTCTTTTGGTAGTTAGTT+TGG + chr3_2:23250259-23250278 Msa0399720:intron 35.0%
ACACTGATGAAGTAAAGTAG+GGG + chr3_2:23250451-23250470 Msa0399720:intron 35.0%
TACATTTGTCTTTGAACGTG+AGG + chr3_2:23250506-23250525 Msa0399720:intron 35.0%
TATGTCTTTCGCTAGTAGTT+TGG + chr3_2:23250618-23250637 Msa0399720:intron 35.0%
TGGTCTTCGAATATGTTTGT+AGG + chr3_2:23250638-23250657 Msa0399720:intron 35.0%
! ATGGAATTGCAGGGTTATTT+TGG + chr3_2:23250976-23250995 Msa0399720:intron 35.0%
TTAACTGGGGAAGTTTAGTT+AGG + chr3_2:23251500-23251519 Msa0399720:intron 35.0%
TAACTGGGGAAGTTTAGTTA+GGG + chr3_2:23251501-23251520 Msa0399720:intron 35.0%
CAGTGTTAAGTTTGTGCTAT+AGG + chr3_2:23251524-23251543 Msa0399720:intron 35.0%
AAGTTTGTGCTATAGGATTG+TGG + chr3_2:23251531-23251550 Msa0399720:intron 35.0%
ACTAAAATCTGAGAGCAAGA+AGG - chr3_2:23251583-23251602 None:intergenic 35.0%
! TAACCTAGTTCTTACCTCTT+TGG + chr3_2:23251661-23251680 Msa0399720:intron 35.0%
TAACCAAAGAGGTAAGAACT+AGG - chr3_2:23251667-23251686 None:intergenic 35.0%
CGCAATAGCGTAAAAGAATT+CGG - chr3_2:23252472-23252491 None:intergenic 35.0%
TTGCAGCGTTGTTAAATAGA+GGG - chr3_2:23252503-23252522 None:intergenic 35.0%
TTTGCAGCGTTGTTAAATAG+AGG - chr3_2:23252504-23252523 None:intergenic 35.0%
TCATCCACCTTATATCCTAA+TGG - chr3_2:23252565-23252584 None:intergenic 35.0%
GAAGCATATATCCAAGGATA+CGG - chr3_2:23252622-23252641 None:intergenic 35.0%
TTGTTGAACACTCCTAATAC+AGG - chr3_2:23252721-23252740 None:intergenic 35.0%
!!! TCGTGCAGTTTAGTTCTTTT+TGG + chr3_2:23252846-23252865 Msa0399720:intron 35.0%
TGCACTTCAGTTTAACGATT+CGG + chr3_2:23252869-23252888 Msa0399720:intron 35.0%
! TAAAGCACTAAATGTTGGTC+CGG + chr3_2:23253032-23253051 Msa0399720:intron 35.0%
!! ATACAAAAGGTATTGTGCAC+CGG - chr3_2:23253078-23253097 None:intergenic 35.0%
CCGAACTGGTATAATACAAA+AGG - chr3_2:23253091-23253110 None:intergenic 35.0%
ACTGAACTGTTGTAACAGTT+CGG + chr3_2:23253120-23253139 Msa0399720:intron 35.0%
GCACTTTAACAAGTGAAAAC+AGG - chr3_2:23253255-23253274 None:intergenic 35.0%
AAAATTCACGATTCTTGGGA+AGG + chr3_2:23253434-23253453 Msa0399720:CDS 35.0%
! CATCCTAAATGTTAAGTTGC+TGG + chr3_2:23253490-23253509 Msa0399720:intron 35.0%
GTTGCTAGCATTTACAAAGA+GGG + chr3_2:23253578-23253597 Msa0399720:CDS 35.0%
TTGCTAGCATTTACAAAGAG+GGG + chr3_2:23253579-23253598 Msa0399720:CDS 35.0%
GCATTTCTCTATTTGATGCA+TGG + chr3_2:23253650-23253669 Msa0399720:intron 35.0%
CAAGTAGTGATGCAATTGAA+AGG - chr3_2:23253780-23253799 None:intergenic 35.0%
GAAATCTACATTGTATGGTG+AGG + chr3_2:23253917-23253936 Msa0399720:intron 35.0%
TAGACTTAACGAAAACAAGG+CGG - chr3_2:23254285-23254304 None:intergenic 35.0%
GGATGATCCAATATTGCAAT+AGG + chr3_2:23254430-23254449 Msa0399720:intron 35.0%
CAATGGATAAAGCTTAGGTA+CGG - chr3_2:23254613-23254632 None:intergenic 35.0%
ATGGTAACTGTGAATTACGT+AGG + chr3_2:23254651-23254670 Msa0399720:intron 35.0%
TGTGAATTACGTAGGTCATT+TGG + chr3_2:23254659-23254678 Msa0399720:intron 35.0%
AAAAGTCCTGCAACATACAA+AGG - chr3_2:23254805-23254824 None:intergenic 35.0%
! CAGGACTTTTCATACAGAAA+AGG + chr3_2:23254815-23254834 Msa0399720:intron 35.0%
!! TTATTTGGTGCTGAAACTAC+TGG + chr3_2:23254848-23254867 Msa0399720:CDS 35.0%
GATTGCAAAACTGAACCATT+TGG + chr3_2:23254893-23254912 Msa0399720:CDS 35.0%
CTGACATATGTTTCAACCAT+TGG - chr3_2:23254938-23254957 None:intergenic 35.0%
CAATGGTTGAAACATATGTC+AGG + chr3_2:23254936-23254955 Msa0399720:CDS 35.0%
TGTCAGGTGTTTGAATCTAT+CGG + chr3_2:23254952-23254971 Msa0399720:CDS 35.0%
! TTGAATCTATCGGTTAGTGT+TGG + chr3_2:23254962-23254981 Msa0399720:CDS 35.0%
GTATCAACACATGTTTCAGA+AGG - chr3_2:23255040-23255059 None:intergenic 35.0%
! TGAAACATGTGTTGATACTG+AGG + chr3_2:23255042-23255061 Msa0399720:CDS 35.0%
TTCTTAAAGCTCCCTAAACT+AGG - chr3_2:23255214-23255233 None:intergenic 35.0%
!! TTTTAAAAACTCGACCGAAC+TGG + chr3_2:23255280-23255299 Msa0399720:three_prime_UTR 35.0%
! ATTACTGGTAGTGAGAGAAG+AGG - chr3_2:23249462-23249481 None:intergenic 40.0%
AATTCTTCCGGTGGCAATTT+CGG - chr3_2:23249598-23249617 None:intergenic 40.0%
GGTCTCATGTTCAATTCTTC+CGG - chr3_2:23249610-23249629 None:intergenic 40.0%
TGCTGAGAATGAGATGAAGA+AGG + chr3_2:23249717-23249736 Msa0399720:CDS 40.0%
GAGAATGAGATGAAGAAGGA+AGG + chr3_2:23249721-23249740 Msa0399720:CDS 40.0%
GTTATACCTGAGGTGAAACA+AGG - chr3_2:23249813-23249832 None:intergenic 40.0%
AGCCATGTTAGTATAGTTCC+TGG + chr3_2:23249907-23249926 Msa0399720:intron 40.0%
GCCATGTTAGTATAGTTCCT+GGG + chr3_2:23249908-23249927 Msa0399720:intron 40.0%
ACCCAGGAACTATACTAACA+TGG - chr3_2:23249912-23249931 None:intergenic 40.0%
GGAATATGCTAAGGACTATG+TGG + chr3_2:23250051-23250070 Msa0399720:intron 40.0%
AAAGTCAGGGACAAATTTGG+TGG + chr3_2:23250188-23250207 Msa0399720:intron 40.0%
! GCATCCACAAATGTGTCTTT+TGG + chr3_2:23250247-23250266 Msa0399720:intron 40.0%
TGATGAAGTAAAGTAGGGGT+AGG + chr3_2:23250455-23250474 Msa0399720:intron 40.0%
ATTTGTCTTTGAACGTGAGG+CGG + chr3_2:23250509-23250528 Msa0399720:intron 40.0%
CACATATAAAGGGACTGTGA+TGG + chr3_2:23250754-23250773 Msa0399720:intron 40.0%
!! CATTTTGACACACACATGAG+AGG - chr3_2:23251076-23251095 None:intergenic 40.0%
GTCTCGTGATTCTTTCATCA+AGG - chr3_2:23251293-23251312 None:intergenic 40.0%
! TTTTTGCACATGACAGGTCA+TGG - chr3_2:23251560-23251579 None:intergenic 40.0%
! AGAAGGTTTTTGCACATGAC+AGG - chr3_2:23251566-23251585 None:intergenic 40.0%
!!! ATCGGAGTTGTTTTAGTAGC+AGG + chr3_2:23251618-23251637 Msa0399720:intron 40.0%
! CAACAGAGTTCTAACCAAAG+AGG - chr3_2:23251678-23251697 None:intergenic 40.0%
GAACTCTGTTGTATAGTCTC+AGG + chr3_2:23251687-23251706 Msa0399720:intron 40.0%
AGCGTATTAAGGAGTTCATC+AGG - chr3_2:23251835-23251854 None:intergenic 40.0%
TGTTGTTCTTGGTAGATTCC+AGG + chr3_2:23252167-23252186 Msa0399720:intron 40.0%
CTGTTGGACTACACTTAGTT+GGG + chr3_2:23252228-23252247 Msa0399720:CDS 40.0%
TGTTGGACTACACTTAGTTG+GGG + chr3_2:23252229-23252248 Msa0399720:CDS 40.0%
TTGTCAAATAGAGGCTACAG+TGG - chr3_2:23252406-23252425 None:intergenic 40.0%
CCTAATGGCTGAAAAGATAG+AGG - chr3_2:23252550-23252569 None:intergenic 40.0%
! CCTCTATCTTTTCAGCCATT+AGG + chr3_2:23252547-23252566 Msa0399720:intron 40.0%
TCAGCCATTAGGATATAAGG+TGG + chr3_2:23252558-23252577 Msa0399720:intron 40.0%
TCAGTAAAACTGAACCGAAC+TGG - chr3_2:23253105-23253124 None:intergenic 40.0%
ATAAATCACGACGGACAGAT+AGG - chr3_2:23253181-23253200 None:intergenic 40.0%
GGTTGCTAGCATTTACAAAG+AGG + chr3_2:23253577-23253596 Msa0399720:CDS 40.0%
CAATTGCATCACTACTTGAG+AGG + chr3_2:23253782-23253801 Msa0399720:intron 40.0%
GAATTACGTAGGTCATTTGG+TGG + chr3_2:23254662-23254681 Msa0399720:intron 40.0%
ATGGTTCCTTTGTATGTTGC+AGG + chr3_2:23254796-23254815 Msa0399720:intron 40.0%
TTGCAATCTAACAACGCTTC+AGG - chr3_2:23254881-23254900 None:intergenic 40.0%
TGCAAAACTGAACCATTTGG+TGG + chr3_2:23254896-23254915 Msa0399720:CDS 40.0%
! AAAACTGAACCATTTGGTGG+TGG + chr3_2:23254899-23254918 Msa0399720:CDS 40.0%
! TTGATAGTTCCACCACCAAA+TGG - chr3_2:23254911-23254930 None:intergenic 40.0%
TGGAACTATCAAGATCCCAA+TGG + chr3_2:23254919-23254938 Msa0399720:CDS 40.0%
! AACATGTGTTGATACTGAGG+AGG + chr3_2:23255045-23255064 Msa0399720:CDS 40.0%
ATGACCTGAAACCTGATCAA+GGG + chr3_2:23255182-23255201 Msa0399720:three_prime_UTR 40.0%
GCCAGTTCAACTAGTTGAAT+CGG + chr3_2:23255302-23255321 Msa0399720:three_prime_UTR 40.0%
CCAGTTCAACTAGTTGAATC+GGG + chr3_2:23255303-23255322 Msa0399720:three_prime_UTR 40.0%
ATCATGTTTACACTGCAGTC+TGG + chr3_2:23255352-23255371 Msa0399720:three_prime_UTR 40.0%
GGAGACAAGGTCATTTATGA+GGG - chr3_2:23255489-23255508 None:intergenic 40.0%
AGGAGACAAGGTCATTTATG+AGG - chr3_2:23255490-23255509 None:intergenic 40.0%
GTTGAGGGATTTCAGTCTCA+AGG - chr3_2:23249327-23249346 None:intergenic 45.0%
GGAAAGGAAATGGAGGGAAA+AGG - chr3_2:23249431-23249450 None:intergenic 45.0%
GTAGTGAGAGAAGAGGAAAG+GGG - chr3_2:23249455-23249474 None:intergenic 45.0%
GGTAGTGAGAGAAGAGGAAA+GGG - chr3_2:23249456-23249475 None:intergenic 45.0%
! TGGTAGTGAGAGAAGAGGAA+AGG - chr3_2:23249457-23249476 None:intergenic 45.0%
CTCATGTTCAATTCTTCCGG+TGG - chr3_2:23249607-23249626 None:intergenic 45.0%
! AAGGAAGGTAGTTTGCCACA+TGG + chr3_2:23249736-23249755 Msa0399720:CDS 45.0%
! AGTTGTCCTTGTTTCACCTC+AGG + chr3_2:23249804-23249823 Msa0399720:CDS 45.0%
! ATTTGATGGCTTACTCACCC+AGG - chr3_2:23249928-23249947 None:intergenic 45.0%
TTTGTAGGACGCGCTCAAAT+AGG + chr3_2:23249959-23249978 Msa0399720:intron 45.0%
!! TAAGAGTGCCCTACAAAGTC+AGG + chr3_2:23250174-23250193 Msa0399720:intron 45.0%
!! AAGAGTGCCCTACAAAGTCA+GGG + chr3_2:23250175-23250194 Msa0399720:intron 45.0%
TGAAGTAAAGTAGGGGTAGG+TGG + chr3_2:23250458-23250477 Msa0399720:intron 45.0%
GAAGTAAAGTAGGGGTAGGT+GGG + chr3_2:23250459-23250478 Msa0399720:intron 45.0%
TGGTAGATTCCAGGAAACAC+TGG + chr3_2:23252176-23252195 Msa0399720:intron 45.0%
GCTGTTGGACTACACTTAGT+TGG + chr3_2:23252227-23252246 Msa0399720:CDS 45.0%
CGATGCATGATTGACAACAC+GGG - chr3_2:23252334-23252353 None:intergenic 45.0%
GCGATGCATGATTGACAACA+CGG - chr3_2:23252335-23252354 None:intergenic 45.0%
GATACCAAACTAAAGCGAGC+TGG + chr3_2:23252583-23252602 Msa0399720:CDS 45.0%
CAATCCAGCTCGCTTTAGTT+TGG - chr3_2:23252590-23252609 None:intergenic 45.0%
CAAACTAAAGCGAGCTGGAT+TGG + chr3_2:23252588-23252607 Msa0399720:CDS 45.0%
CACAGGGTTGTACCTGTATT+AGG + chr3_2:23252706-23252725 Msa0399720:intron 45.0%
CGATAGTTCACGAACTGAAC+TGG - chr3_2:23252829-23252848 None:intergenic 45.0%
CACTAAATGTTGGTCCGGTT+GGG + chr3_2:23253037-23253056 Msa0399720:intron 45.0%
TCTGTGTTTCCAATCCCAAC+CGG - chr3_2:23253054-23253073 None:intergenic 45.0%
TGGGATTGGAAACACAGAAC+CGG + chr3_2:23253056-23253075 Msa0399720:intron 45.0%
CGGTGAAACGAATCACGAAT+AGG + chr3_2:23253140-23253159 Msa0399720:intron 45.0%
TGGTACAGGAAGGTGAAAAG+AGG + chr3_2:23253556-23253575 Msa0399720:intron 45.0%
CAATCTAACAACGCTTCAGG+TGG - chr3_2:23254878-23254897 None:intergenic 45.0%
CATGACCTGAAACCTGATCA+AGG + chr3_2:23255181-23255200 Msa0399720:three_prime_UTR 45.0%
! AAGGGCACAGTCCTAGTTTA+GGG + chr3_2:23255200-23255219 Msa0399720:three_prime_UTR 45.0%
ACTAGTTGAACTGGCCAGTT+CGG - chr3_2:23255297-23255316 None:intergenic 45.0%
CCCGATTCAACTAGTTGAAC+TGG - chr3_2:23255306-23255325 None:intergenic 45.0%
CAACTAGTTGAATCGGGAAC+TGG + chr3_2:23255309-23255328 Msa0399720:three_prime_UTR 45.0%
GGTTTGTACCACGATTGAAG+TGG + chr3_2:23255382-23255401 Msa0399720:three_prime_UTR 45.0%
CGGTTTAACCACTTCAATCG+TGG - chr3_2:23255393-23255412 None:intergenic 45.0%
CGATTGAAGTGGTTAAACCG+TGG + chr3_2:23255393-23255412 Msa0399720:three_prime_UTR 45.0%
!!! AATAATTATTTTCATAATAT+TGG - chr3_2:23251885-23251904 None:intergenic 5.0%
CTTTCCGTCTATCCGATGCA+GGG - chr3_2:23249258-23249277 None:intergenic 50.0%
TCTTTCCGTCTATCCGATGC+AGG - chr3_2:23249259-23249278 None:intergenic 50.0%
GCAACAGCATTGTGAAGCGA+TGG + chr3_2:23249283-23249302 Msa0399720:exon 50.0%
AGTCTCAAGGCAGCAGGAAA+TGG - chr3_2:23249314-23249333 None:intergenic 50.0%
GATTTCAGTCTCAAGGCAGC+AGG - chr3_2:23249320-23249339 None:intergenic 50.0%
! TGCTGCTGCTGATAGGTTGA+GGG - chr3_2:23249342-23249361 None:intergenic 50.0%
ATGGAGGGAAAAGGTGAGGT+GGG - chr3_2:23249422-23249441 None:intergenic 50.0%
AATGGAGGGAAAAGGTGAGG+TGG - chr3_2:23249423-23249442 None:intergenic 50.0%
GGAAATGGAGGGAAAAGGTG+AGG - chr3_2:23249426-23249445 None:intergenic 50.0%
AGGGGAGGAAAGGAAATGGA+GGG - chr3_2:23249437-23249456 None:intergenic 50.0%
AAGGGGAGGAAAGGAAATGG+AGG - chr3_2:23249438-23249457 None:intergenic 50.0%
GGAAAGGGGAGGAAAGGAAA+TGG - chr3_2:23249441-23249460 None:intergenic 50.0%
AGAAGAGGAAAGGGGAGGAA+AGG - chr3_2:23249447-23249466 None:intergenic 50.0%
GAGAGAGAGAGAGGGATTAC+TGG - chr3_2:23249477-23249496 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG - chr3_2:23249485-23249504 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr3_2:23249484-23249503 None:intergenic 50.0%
TCTCTCTCTCTCTCTCTCTG+TGG + chr3_2:23249525-23249544 Msa0399720:intron 50.0%
! GGTAGTTTGCCACATGGTGT+TGG + chr3_2:23249742-23249761 Msa0399720:CDS 50.0%
! TTTGCCACATGGTGTTGGAG+AGG + chr3_2:23249747-23249766 Msa0399720:CDS 50.0%
! TTGCCACATGGTGTTGGAGA+GGG + chr3_2:23249748-23249767 Msa0399720:CDS 50.0%
TATTGAGAGGGCGGAGAAAG+AGG + chr3_2:23251182-23251201 Msa0399720:intron 50.0%
ATTGAGAGGGCGGAGAAAGA+GGG + chr3_2:23251183-23251202 Msa0399720:intron 50.0%
AGCAGGAACTGCATTTGAGC+TGG + chr3_2:23251635-23251654 Msa0399720:intron 50.0%
AGTGGGGTTAGAGCAAGTCT+TGG + chr3_2:23251997-23252016 Msa0399720:intron 50.0%
ACATGTGCAGCATCAGCTGT+TGG + chr3_2:23252212-23252231 Msa0399720:CDS 50.0%
GCACTAAATGTTGGTCCGGT+TGG + chr3_2:23253036-23253055 Msa0399720:intron 50.0%
AATGTTGGTCCGGTTGGGAT+TGG + chr3_2:23253042-23253061 Msa0399720:intron 50.0%
! ACGTAGGTCATTTGGTGGAC+AGG + chr3_2:23254667-23254686 Msa0399720:intron 50.0%
TGTGCCCTTGATCAGGTTTC+AGG - chr3_2:23255189-23255208 None:intergenic 50.0%
! CAAGGGCACAGTCCTAGTTT+AGG + chr3_2:23255199-23255218 Msa0399720:three_prime_UTR 50.0%
ACACTGCAGTCTGGTTGAAC+TGG + chr3_2:23255361-23255380 Msa0399720:three_prime_UTR 50.0%
ACACTCGTCTCTCCCTGCAT+CGG + chr3_2:23249243-23249262 Msa0399720:five_prime_UTR 55.0%
CTCTCCCTGCATCGGATAGA+CGG + chr3_2:23249251-23249270 Msa0399720:five_prime_UTR 55.0%
CTGCTGCTGCTGATAGGTTG+AGG - chr3_2:23249343-23249362 None:intergenic 55.0%
!! GGTTTGCTGCTGCTGCTGAT+AGG - chr3_2:23249349-23249368 None:intergenic 55.0%
GTGAGAGAAGAGGAAAGGGG+AGG - chr3_2:23249452-23249471 None:intergenic 55.0%
TAGCCCACCGAAATTGCCAC+CGG + chr3_2:23249588-23249607 Msa0399720:intron 55.0%
CTTCCGGTGGCAATTTCGGT+GGG - chr3_2:23249594-23249613 None:intergenic 55.0%
TCTTCCGGTGGCAATTTCGG+TGG - chr3_2:23249595-23249614 None:intergenic 55.0%
! TGCCACATGGTGTTGGAGAG+GGG + chr3_2:23249749-23249768 Msa0399720:CDS 55.0%
ATCCCCTCTCCAACACCATG+TGG - chr3_2:23249754-23249773 None:intergenic 55.0%
GCAATGCAGCCAGTGTTTCC+TGG - chr3_2:23252188-23252207 None:intergenic 55.0%
! AGCGAGCTGGATTGGACTAC+TGG + chr3_2:23252596-23252615 Msa0399720:CDS 55.0%
TGGACTACTGGCCGTATCCT+TGG + chr3_2:23252608-23252627 Msa0399720:intron 55.0%
CTAGGACTGTGCCCTTGATC+AGG - chr3_2:23255196-23255215 None:intergenic 55.0%
TCGGGAACTGGCGAATTCGT+CGG + chr3_2:23255321-23255340 Msa0399720:three_prime_UTR 55.0%
GAACTGGCGAATTCGTCGGT+TGG + chr3_2:23255325-23255344 Msa0399720:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 23249238 23255520 23249238 ID=Msa0399720;Name=Msa0399720
chr3_2 mRNA 23249238 23255520 23249238 ID=Msa0399720-mRNA-1;Parent=Msa0399720;Name=Msa0399720-mRNA-1;_AED=0.04;_eAED=0.04;_QI=64|1|1|1|1|1|7|421|277
chr3_2 exon 23249238 23249476 23249238 ID=Msa0399720-mRNA-1:exon:4930;Parent=Msa0399720-mRNA-1
chr3_2 exon 23249692 23249825 23249692 ID=Msa0399720-mRNA-1:exon:4931;Parent=Msa0399720-mRNA-1
chr3_2 exon 23252182 23252250 23252182 ID=Msa0399720-mRNA-1:exon:4932;Parent=Msa0399720-mRNA-1
chr3_2 exon 23252562 23252620 23252562 ID=Msa0399720-mRNA-1:exon:4933;Parent=Msa0399720-mRNA-1
chr3_2 exon 23253421 23253481 23253421 ID=Msa0399720-mRNA-1:exon:4934;Parent=Msa0399720-mRNA-1
chr3_2 exon 23253564 23253617 23253564 ID=Msa0399720-mRNA-1:exon:4935;Parent=Msa0399720-mRNA-1
chr3_2 exon 23254818 23255520 23254818 ID=Msa0399720-mRNA-1:exon:4936;Parent=Msa0399720-mRNA-1
chr3_2 five_prime_UTR 23249238 23249301 23249238 ID=Msa0399720-mRNA-1:five_prime_utr;Parent=Msa0399720-mRNA-1
chr3_2 CDS 23249302 23249476 23249302 ID=Msa0399720-mRNA-1:cds;Parent=Msa0399720-mRNA-1
chr3_2 CDS 23249692 23249825 23249692 ID=Msa0399720-mRNA-1:cds;Parent=Msa0399720-mRNA-1
chr3_2 CDS 23252182 23252250 23252182 ID=Msa0399720-mRNA-1:cds;Parent=Msa0399720-mRNA-1
chr3_2 CDS 23252562 23252620 23252562 ID=Msa0399720-mRNA-1:cds;Parent=Msa0399720-mRNA-1
chr3_2 CDS 23253421 23253481 23253421 ID=Msa0399720-mRNA-1:cds;Parent=Msa0399720-mRNA-1
chr3_2 CDS 23253564 23253617 23253564 ID=Msa0399720-mRNA-1:cds;Parent=Msa0399720-mRNA-1
chr3_2 CDS 23254818 23255099 23254818 ID=Msa0399720-mRNA-1:cds;Parent=Msa0399720-mRNA-1
chr3_2 three_prime_UTR 23255100 23255520 23255100 ID=Msa0399720-mRNA-1:three_prime_utr;Parent=Msa0399720-mRNA-1
Gene Sequence

>Msa0399720

ATGGACATACCATTTCCTGCTGCCTTGAGACTGAAATCCCTCAACCTATCAGCAGCAGCAGCAAACCCTTTTCATTTTCGATCCAAACTCTTTCTTTTTCGTCAACTTCACTTCAAACCCACCTCACCTTTTCCCTCCATTTCCTTTCCTCCCCTTTCCTCTTCTCTCACTACCAATGGTTCTGTTGCTGCTGCTGCTGCTGCTGAGAATGAGATGAAGAAGGAAGGTAGTTTGCCACATGGTGTTGGAGAGGGGATTAATGAAGCATCACATTCTAAGATTCTTCAAGTTGTCCTTGTTTCACCTCAGATTCCAGGAAACACTGGCTGCATTGCTAGAACATGTGCAGCATCAGCTGTTGGACTACACTTAGTTGGGCCATTAGGATATAAGGTGGATGATACCAAACTAAAGCGAGCTGGATTGGACTACTGGCCATACGTCGTTGTTAAAATTCACGATTCTTGGGAAGGTTTTCGTGATTATTTTTTGCAACAGGAAGGTGAAAAGAGGTTGCTAGCATTTACAAAGAGGGGAACAAAAATTCACTCTGACTTTTCATACAGAAAAGGCGATTATCTTTTATTTGGTGCTGAAACTACTGGTCTTCCACCTGAAGCGTTGTTAGATTGCAAAACTGAACCATTTGGTGGTGGAACTATCAAGATCCCAATGGTTGAAACATATGTCAGGTGTTTGAATCTATCGGTTAGTGTTGGCATAGCTTTGTATGAAGCTTCTAGACAACTAAATTACGAATCACTTCAAATACCTTCTGAAACATGTGTTGATACTGAGGAGGAGTCATTCATTACTGAAGACATTTTTGGCTGA

Protein sequence

>Msa0399720

MDIPFPAALRLKSLNLSAAAANPFHFRSKLFLFRQLHFKPTSPFPSISFPPLSSSLTTNGSVAAAAAAENEMKKEGSLPHGVGEGINEASHSKILQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGYKVDDTKLKRAGLDYWPYVVVKIHDSWEGFRDYFLQQEGEKRLLAFTKRGTKIHSDFSYRKGDYLLFGAETTGLPPEALLDCKTEPFGGGTIKIPMVETYVRCLNLSVSVGIALYEASRQLNYESLQIPSETCVDTEEESFITEDIFG*