Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260180 | AAV85438.1 | 55.000 | 120 | 7 | 1 | 1 | 120 | 1 | 73 | 5.57e-33 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260180 | sp|P18646|DEF_VIGUN | 70.588 | 68 | 19 | 1 | 1 | 67 | 1 | 68 | 1.01e-28 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260180 | Q4G3U6 | 55.000 | 120 | 7 | 1 | 1 | 120 | 1 | 73 | 2.66e-33 | 120 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006700 | Msa0260180 | 0.810674 | 1.025021e-50 | -8.615850e-47 |
| Msa0008850 | Msa0260180 | 0.824077 | 9.810426e-54 | -8.615850e-47 |
| Msa0020630 | Msa0260180 | 0.807249 | 5.543847e-50 | -8.615850e-47 |
| Msa0038310 | Msa0260180 | 0.834187 | 3.464468e-56 | -8.615850e-47 |
| Msa0043940 | Msa0260180 | 0.814921 | 1.204205e-51 | -8.615850e-47 |
| Msa0047470 | Msa0260180 | 0.820325 | 7.280147e-53 | -8.615850e-47 |
| Msa0064550 | Msa0260180 | 0.800378 | 1.482086e-48 | -8.615850e-47 |
| Msa0068410 | Msa0260180 | 0.802784 | 4.759570e-49 | -8.615850e-47 |
| Msa0084630 | Msa0260180 | 0.801576 | 8.435895e-49 | -8.615850e-47 |
| Msa0086090 | Msa0260180 | 0.815319 | 9.827196e-52 | -8.615850e-47 |
| Msa0092710 | Msa0260180 | 0.807420 | 5.098643e-50 | -8.615850e-47 |
| Msa0100250 | Msa0260180 | 0.824123 | 9.573922e-54 | -8.615850e-47 |
| Msa0101060 | Msa0260180 | 0.811593 | 6.479606e-51 | -8.615850e-47 |
| Msa0132620 | Msa0260180 | 0.809948 | 1.469732e-50 | -8.615850e-47 |
| Msa0139720 | Msa0260180 | -0.810184 | 1.307733e-50 | -8.615850e-47 |
| Msa0154270 | Msa0260180 | 0.803613 | 3.206979e-49 | -8.615850e-47 |
| Msa0155610 | Msa0260180 | 0.812235 | 4.696248e-51 | -8.615850e-47 |
| Msa0159750 | Msa0260180 | 0.803364 | 3.611418e-49 | -8.615850e-47 |
| Msa0182640 | Msa0260180 | 0.813551 | 2.416772e-51 | -8.615850e-47 |
| Msa0203180 | Msa0260180 | 0.801370 | 9.297389e-49 | -8.615850e-47 |
| Msa0216210 | Msa0260180 | 0.853073 | 3.041127e-61 | -8.615850e-47 |
| Msa0216220 | Msa0260180 | 0.842106 | 3.166003e-58 | -8.615850e-47 |
| Msa0223100 | Msa0260180 | 0.828380 | 9.285130e-55 | -8.615850e-47 |
| Msa0223290 | Msa0260180 | 0.811180 | 7.962895e-51 | -8.615850e-47 |
| Msa0243470 | Msa0260180 | 0.811696 | 6.151875e-51 | -8.615850e-47 |
| Msa0260180 | Msa0260190 | 0.831537 | 1.577724e-55 | -8.615850e-47 |
| Msa0260180 | Msa0265210 | 0.814329 | 1.628504e-51 | -8.615850e-47 |
| Msa0260180 | Msa0265580 | 0.835570 | 1.553749e-56 | -8.615850e-47 |
| Msa0260180 | Msa0281940 | 0.817301 | 3.540829e-52 | -8.615850e-47 |
| Msa0260180 | Msa0282170 | 0.844713 | 6.375783e-59 | -8.615850e-47 |
| Msa0260180 | Msa0284870 | 0.808227 | 3.434536e-50 | -8.615850e-47 |
| Msa0260180 | Msa0288240 | 0.801148 | 1.032183e-48 | -8.615850e-47 |
| Msa0260180 | Msa0295570 | 0.829033 | 6.456325e-55 | -8.615850e-47 |
| Msa0260180 | Msa0295580 | 0.940749 | 1.370102e-100 | -8.615850e-47 |
| Msa0260180 | Msa0303440 | 0.819406 | 1.180906e-52 | -8.615850e-47 |
| Msa0260180 | Msa0303500 | 0.823526 | 1.320649e-53 | -8.615850e-47 |
| Msa0260180 | Msa0323630 | 0.801396 | 9.183134e-49 | -8.615850e-47 |
| Msa0260180 | Msa0333900 | 0.808430 | 3.108784e-50 | -8.615850e-47 |
| Msa0260180 | Msa0334020 | 0.811028 | 8.593479e-51 | -8.615850e-47 |
| Msa0260180 | Msa0336270 | 0.804365 | 2.236839e-49 | -8.615850e-47 |
| Msa0260180 | Msa0354390 | 0.823285 | 1.503860e-53 | -8.615850e-47 |
| Msa0260180 | Msa0377280 | 0.833796 | 4.340578e-56 | -8.615850e-47 |
| Msa0260180 | Msa0401340 | 0.833382 | 5.508239e-56 | -8.615850e-47 |
| Msa0260180 | Msa0404690 | 0.801407 | 9.138711e-49 | -8.615850e-47 |
| Msa0260180 | Msa0418430 | 0.814285 | 1.665583e-51 | -8.615850e-47 |
| Msa0260180 | Msa0431520 | 0.805829 | 1.105173e-49 | -8.615850e-47 |
| Msa0260180 | Msa0431830 | 0.824750 | 6.813952e-54 | -8.615850e-47 |
| Msa0260180 | Msa0448120 | 0.815154 | 1.068927e-51 | -8.615850e-47 |
| Msa0260180 | Msa0462590 | 0.805824 | 1.107609e-49 | -8.615850e-47 |
| Msa0260180 | Msa0546080 | 0.802245 | 6.147062e-49 | -8.615850e-47 |
| Msa0260180 | Msa0555960 | 0.804018 | 2.641915e-49 | -8.615850e-47 |
| Msa0260180 | Msa0568610 | 0.835237 | 1.885815e-56 | -8.615850e-47 |
| Msa0260180 | Msa0576600 | 0.838636 | 2.556872e-57 | -8.615850e-47 |
| Msa0260180 | Msa0579340 | 0.852454 | 4.569079e-61 | -8.615850e-47 |
| Msa0260180 | Msa0610360 | 0.814023 | 1.903059e-51 | -8.615850e-47 |
| Msa0260180 | Msa0617830 | 0.824353 | 8.452616e-54 | -8.615850e-47 |
| Msa0260180 | Msa0618520 | 0.839661 | 1.386268e-57 | -8.615850e-47 |
| Msa0260180 | Msa0620640 | 0.802484 | 5.488632e-49 | -8.615850e-47 |
| Msa0260180 | Msa0622340 | 0.831486 | 1.624546e-55 | -8.615850e-47 |
| Msa0260180 | Msa0650650 | 0.842353 | 2.723176e-58 | -8.615850e-47 |
| Msa0260180 | Msa0650740 | 0.850935 | 1.230937e-60 | -8.615850e-47 |
| Msa0260180 | Msa0650890 | 0.814926 | 1.201211e-51 | -8.615850e-47 |
| Msa0260180 | Msa0656270 | 0.823893 | 1.084055e-53 | -8.615850e-47 |
| Msa0260180 | Msa0656680 | 0.803457 | 3.453830e-49 | -8.615850e-47 |
| Msa0260180 | Msa0700070 | 0.822055 | 2.905919e-53 | -8.615850e-47 |
| Msa0260180 | Msa0704220 | 0.800492 | 1.404993e-48 | -8.615850e-47 |
| Msa0260180 | Msa0738860 | 0.835924 | 1.264146e-56 | -8.615850e-47 |
| Msa0260180 | Msa0738870 | 0.866685 | 2.380610e-65 | -8.615850e-47 |
| Msa0260180 | Msa0738880 | 0.821612 | 3.680867e-53 | -8.615850e-47 |
| Msa0260180 | Msa0783270 | 0.862848 | 3.788168e-64 | -8.615850e-47 |
| Msa0260180 | Msa0787720 | 0.801212 | 1.001541e-48 | -8.615850e-47 |
| Msa0260180 | Msa0796430 | -0.803837 | 2.881354e-49 | -8.615850e-47 |
| Msa0260180 | Msa0819320 | 0.820870 | 5.459052e-53 | -8.615850e-47 |
| Msa0260180 | Msa0819330 | 0.836114 | 1.131457e-56 | -8.615850e-47 |
| Msa0260180 | Msa0819360 | 0.848109 | 7.554480e-60 | -8.615850e-47 |
| Msa0260180 | Msa0819370 | 0.826488 | 2.639406e-54 | -8.615850e-47 |
| Msa0260180 | Msa0828570 | 0.809459 | 1.872863e-50 | -8.615850e-47 |
| Msa0260180 | Msa0834270 | -0.800476 | 1.415794e-48 | -8.615850e-47 |
| Msa0260180 | Msa0859520 | 0.826651 | 2.413476e-54 | -8.615850e-47 |
| Msa0260180 | Msa0859530 | 0.822923 | 1.826548e-53 | -8.615850e-47 |
| Msa0260180 | Msa0877420 | 0.805049 | 1.610143e-49 | -8.615850e-47 |
| Msa0260180 | Msa0899700 | 0.819279 | 1.262293e-52 | -8.615850e-47 |
| Msa0260180 | Msa0934830 | 0.803926 | 2.761221e-49 | -8.615850e-47 |
| Msa0260180 | Msa0964680 | 0.822010 | 2.976922e-53 | -8.615850e-47 |
| Msa0260180 | Msa0971860 | 0.812596 | 3.914863e-51 | -8.615850e-47 |
| Msa0260180 | Msa1043870 | 0.822878 | 1.871353e-53 | -8.615850e-47 |
| Msa0260180 | Msa1061470 | 0.808021 | 3.799955e-50 | -8.615850e-47 |
| Msa0260180 | Msa1063920 | 0.822469 | 2.329666e-53 | -8.615850e-47 |
| Msa0260180 | Msa1093390 | 0.800909 | 1.155343e-48 | -8.615850e-47 |
| Msa0260180 | Msa1095480 | 0.800078 | 1.705981e-48 | -8.615850e-47 |
| Msa0260180 | Msa1108140 | 0.801736 | 7.822784e-49 | -8.615850e-47 |
| Msa0260180 | Msa1115580 | 0.809956 | 1.464425e-50 | -8.615850e-47 |
| Msa0260180 | Msa1132560 | -0.808611 | 2.844354e-50 | -8.615850e-47 |
| Msa0260180 | Msa1182830 | 0.815748 | 7.885125e-52 | -8.615850e-47 |
| Msa0260180 | Msa1218650 | 0.834249 | 3.343222e-56 | -8.615850e-47 |
| Msa0260180 | Msa1241820 | 0.837318 | 5.578203e-57 | -8.615850e-47 |
| Msa0260180 | Msa1282920 | 0.823979 | 1.034641e-53 | -8.615850e-47 |
| Msa0260180 | Msa1286680 | 0.805431 | 1.339420e-49 | -8.615850e-47 |
| Msa0260180 | Msa1287360 | 0.803252 | 3.810158e-49 | -8.615850e-47 |
| Msa0260180 | Msa1306190 | 0.805753 | 1.146624e-49 | -8.615850e-47 |
| Msa0260180 | Msa1306200 | 0.872036 | 4.328784e-67 | -8.615850e-47 |
| Msa0260180 | Msa1317710 | 0.815034 | 1.136912e-51 | -8.615850e-47 |
| Msa0260180 | Msa1354090 | 0.802637 | 5.103416e-49 | -8.615850e-47 |
| Msa0260180 | Msa1361190 | 0.836241 | 1.050405e-56 | -8.615850e-47 |
| Msa0260180 | Msa1378470 | 0.808876 | 2.496461e-50 | -8.615850e-47 |
| Msa0260180 | Msa1419110 | 0.832599 | 8.621340e-56 | -8.615850e-47 |
| Msa0260180 | Msa1421870 | 0.816181 | 6.313625e-52 | -8.615850e-47 |
| Msa0260180 | Msa1439120 | 0.816870 | 4.425032e-52 | -8.615850e-47 |
| Msa0260180 | Msa1439230 | 0.832199 | 1.083323e-55 | -8.615850e-47 |
| Msa0260180 | Msa1440180 | 0.801095 | 1.058607e-48 | -8.615850e-47 |
| Msa0260180 | Msa1440220 | 0.825424 | 4.722129e-54 | -8.615850e-47 |
| Msa0260180 | Msa1449740 | 0.804424 | 2.174680e-49 | -8.615850e-47 |
| Msa0260180 | Msa1450020 | 0.838615 | 2.589117e-57 | -8.615850e-47 |
| Msa0260180 | Msa1454110 | 0.804536 | 2.061221e-49 | -8.615850e-47 |
| Msa0260180 | Msa1455660 | 0.816220 | 6.186281e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260180 | MtrunA17_Chr2g0317741 | 90.741 | 54 | 5 | 0 | 67 | 120 | 20 | 73 | 7.74e-32 | 107 |
| Msa0260180 | MtrunA17_Chr2g0317751 | 77.612 | 67 | 13 | 1 | 1 | 67 | 1 | 65 | 6.16e-31 | 105 |
| Msa0260180 | MtrunA17_Chr8g0339681 | 30.233 | 129 | 72 | 4 | 6 | 120 | 12 | 136 | 1.70e-14 | 65.1 |
| Msa0260180 | MtrunA17_Chr8g0337781 | 43.284 | 67 | 34 | 2 | 1 | 64 | 1 | 66 | 2.27e-11 | 55.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 285 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGAAACATTGAAATTTA+TGG | 0.135689 | 2_2:+57707872 | None:intergenic |
| GTATTAGTTATGCACTATTA+TGG | 0.242779 | 2_2:-57707702 | Msa0260180:three_prime_UTR |
| GGCAAACACTTGTGAGAATT+TGG | 0.253219 | 2_2:-57713609 | Msa0260180:CDS |
| AGAATTTGGCTGGTACATTC+AGG | 0.308301 | 2_2:-57713595 | Msa0260180:CDS |
| GCCACTAACCAAATGCTCTT+TGG | 0.320157 | 2_2:+57713529 | None:intergenic |
| CTGCAGAACCAAAGAGCATT+TGG | 0.345511 | 2_2:-57713537 | Msa0260180:CDS |
| ACCAAAGAGCATTTGGTTAG+TGG | 0.402586 | 2_2:-57713530 | Msa0260180:CDS |
| AGCAAGGACTTGTGAGCATT+TGG | 0.402994 | 2_2:-57707980 | Msa0260180:CDS |
| ACATTCAGGGGACCATGTTT+CGG | 0.416979 | 2_2:-57713581 | Msa0260180:CDS |
| TCATATTTATCATTAAGTTA+TGG | 0.428066 | 2_2:-57714360 | Msa0260180:exon |
| AACAAAGCACACTTAATTAG+TGG | 0.431618 | 2_2:-57707901 | Msa0260180:CDS |
| CCTTCCATGTGTCTTGGTGT+TGG | 0.435430 | 2_2:+57707813 | None:intergenic |
| ATTTGGTTAGTGGCAGGTGC+AGG | 0.436259 | 2_2:-57713520 | Msa0260180:CDS |
| CAACAAAGAGAACGAGGAAG+AGG | 0.464218 | 2_2:+57714309 | None:intergenic |
| ATGGAGAAGAAATCATTAGT+TGG | 0.488503 | 2_2:-57714341 | Msa0260180:CDS |
| AACACTTGTGAGAATTTGGC+TGG | 0.492030 | 2_2:-57713605 | Msa0260180:CDS |
| ATGTTTCCTTCCATGTGTCT+TGG | 0.499118 | 2_2:+57707807 | None:intergenic |
| AAGAGCATTTGGTTAGTGGC+AGG | 0.516258 | 2_2:-57713526 | Msa0260180:CDS |
| GAATTTGGCTGGTACATTCA+GGG | 0.528597 | 2_2:-57713594 | Msa0260180:CDS |
| CATTTGGCTGATACATATAG+AGG | 0.536909 | 2_2:-57707964 | Msa0260180:CDS |
| TTAAGTGTTTGTGTCTAGTG+TGG | 0.553780 | 2_2:+57714409 | None:intergenic |
| CAGTTTGAGTTACCGAAACA+TGG | 0.557423 | 2_2:+57713569 | None:intergenic |
| TTTGGTTAGTGGCAGGTGCA+GGG | 0.565365 | 2_2:-57713519 | Msa0260180:CDS |
| TTCTCCAACACCAAGACACA+TGG | 0.568791 | 2_2:-57707817 | Msa0260180:three_prime_UTR |
| AATTTGGCTGGTACATTCAG+GGG | 0.590330 | 2_2:-57713593 | Msa0260180:CDS |
| AAACTGTTAAGTGTGGAGGA+TGG | 0.609092 | 2_2:-57707845 | Msa0260180:exon |
| CAGCTAGCATCTGTGAAGCA+TGG | 0.627719 | 2_2:+57707940 | None:intergenic |
| CTTGGATGCAGAAGAAATTG+TGG | 0.636627 | 2_2:-57708010 | Msa0260180:intron |
| GCACTCAAAACTGTTAAGTG+TGG | 0.638399 | 2_2:-57707852 | Msa0260180:exon |
| AAATTGTGGTGATTGAAGCA+AGG | 0.641556 | 2_2:-57707996 | Msa0260180:CDS |
| CTCAAAACTGTTAAGTGTGG+AGG | 0.647922 | 2_2:-57707849 | Msa0260180:exon |
| AATTATTTCAAAGACAACGC+AGG | 0.657015 | 2_2:+57707749 | None:intergenic |
| TCTGAATGCAGAAGAAATTG+TGG | 0.657378 | 2_2:-57713639 | Msa0260180:intron |
| CCAACACCAAGACACATGGA+AGG | 0.680221 | 2_2:-57707813 | Msa0260180:three_prime_UTR |
| AGAAGAAATTGTGGTGACTG+AGG | 0.707441 | 2_2:-57713630 | Msa0260180:CDS |
| TACGTGCAACAAAGAGAACG+AGG | 0.716392 | 2_2:+57714303 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATATATATATATATAT+AGG | - | chr2_2:57710816-57710835 | Msa0260180:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | - | chr2_2:57710817-57710836 | Msa0260180:intron | 0.0% |
| !! | ATATAATAATATACTAAGAA+TGG | + | chr2_2:57707828-57707847 | None:intergenic | 10.0% |
| !!! | ACTTTAAATTTTTCTAATAA+TGG | - | chr2_2:57708038-57708057 | Msa0260180:intron | 10.0% |
| !! | TTATAAAAAATAATCAAATG+TGG | - | chr2_2:57708118-57708137 | Msa0260180:intron | 10.0% |
| !!! | TTTTACGTTAATTTTTTTTT+TGG | + | chr2_2:57708170-57708189 | None:intergenic | 10.0% |
| !!! | ATTTTAAAAAAATATTGTAC+CGG | - | chr2_2:57709128-57709147 | Msa0260180:intron | 10.0% |
| !! | GAAAAATTTATTAAAAAAAG+GGG | + | chr2_2:57709763-57709782 | None:intergenic | 10.0% |
| !!! | TATATATAAAAGTTTTTCAT+AGG | + | chr2_2:57710040-57710059 | None:intergenic | 10.0% |
| !!! | AACAATAAAATGTTTTTTTT+AGG | - | chr2_2:57711651-57711670 | Msa0260180:intron | 10.0% |
| !! | TTAGTATAGTAATTAATTAT+GGG | - | chr2_2:57713377-57713396 | Msa0260180:intron | 10.0% |
| !! | TCATATTTATCATTAAGTTA+TGG | - | chr2_2:57707735-57707754 | Msa0260180:three_prime_UTR | 15.0% |
| !!! | AAAGTATATCTTTAATTTTG+TGG | - | chr2_2:57707920-57707939 | Msa0260180:CDS | 15.0% |
| !! | TAATAATACAAATTGAACTT+TGG | - | chr2_2:57708247-57708266 | Msa0260180:intron | 15.0% |
| !! | AAAAAAAAACTTTCTAATAG+TGG | + | chr2_2:57708301-57708320 | None:intergenic | 15.0% |
| !! | CGAAAAAAAATAAAACATTT+AGG | - | chr2_2:57708889-57708908 | Msa0260180:intron | 15.0% |
| !!! | TGTCTCTTTTTTTTTTTTTT+AGG | - | chr2_2:57708938-57708957 | Msa0260180:intron | 15.0% |
| !!! | GTCTCTTTTTTTTTTTTTTA+GGG | - | chr2_2:57708939-57708958 | Msa0260180:intron | 15.0% |
| !!! | TCTCTTTTTTTTTTTTTTAG+GGG | - | chr2_2:57708940-57708959 | Msa0260180:intron | 15.0% |
| !! | GACAAGATATAATATAAAAT+TGG | - | chr2_2:57709236-57709255 | Msa0260180:intron | 15.0% |
| !! | AAAATAAAACAACACTTTAA+AGG | - | chr2_2:57709622-57709641 | Msa0260180:intron | 15.0% |
| !! | AAAGAAAAAAACAACTTAAA+AGG | - | chr2_2:57709883-57709902 | Msa0260180:intron | 15.0% |
| !!! | TTTATCTTCTTTTTATGAAA+GGG | + | chr2_2:57710406-57710425 | None:intergenic | 15.0% |
| !!! | ATTTATCTTCTTTTTATGAA+AGG | + | chr2_2:57710407-57710426 | None:intergenic | 15.0% |
| !! | ATAAACTTATAACTAAAAAG+TGG | + | chr2_2:57710903-57710922 | None:intergenic | 15.0% |
| !!! | ATAAGCAAAATTCAATTTTT+AGG | - | chr2_2:57711240-57711259 | Msa0260180:intron | 15.0% |
| !!! | GTCAATATTGAATATTTTTT+TGG | - | chr2_2:57711597-57711616 | Msa0260180:intron | 15.0% |
| !!! | CATAGTTAATTTATTGATTT+AGG | - | chr2_2:57711731-57711750 | Msa0260180:intron | 15.0% |
| !! | AAAAAAATTGAGTTCTTTAT+GGG | + | chr2_2:57711844-57711863 | None:intergenic | 15.0% |
| !! | TAAAAAAATTGAGTTCTTTA+TGG | + | chr2_2:57711845-57711864 | None:intergenic | 15.0% |
| !! | AGGAAATTATCTTATAATTT+AGG | - | chr2_2:57712589-57712608 | Msa0260180:intron | 15.0% |
| !! | AGAATTACATATAATAACTT+TGG | + | chr2_2:57712808-57712827 | None:intergenic | 15.0% |
| !!! | TTATTTTTTTGTCAAAATTG+TGG | - | chr2_2:57713090-57713109 | Msa0260180:intron | 15.0% |
| !! | CTTAGTATAGTAATTAATTA+TGG | - | chr2_2:57713376-57713395 | Msa0260180:intron | 15.0% |
| !! | AAATGCAGTATATAATTAAT+GGG | + | chr2_2:57713586-57713605 | None:intergenic | 15.0% |
| !!! | GGGTAAATTTTTTAATATAT+AGG | + | chr2_2:57713734-57713753 | None:intergenic | 15.0% |
| !! | TAATACATATATTGTTGTAA+TGG | - | chr2_2:57714060-57714079 | Msa0260180:intron | 15.0% |
| !! | AAAAAAAGAGACAAACAATA+CGG | + | chr2_2:57708931-57708950 | None:intergenic | 20.0% |
| !!! | ATTTTTTTAAAATGACTTGC+TGG | + | chr2_2:57709121-57709140 | None:intergenic | 20.0% |
| !!! | ATTTCTTGCTTTTTATTTTG+AGG | - | chr2_2:57709702-57709721 | Msa0260180:intron | 20.0% |
| !!! | TTTCTTGCTTTTTATTTTGA+GGG | - | chr2_2:57709703-57709722 | Msa0260180:intron | 20.0% |
| !!! | AATAAATTTTTCATTGACCT+TGG | - | chr2_2:57709771-57709790 | Msa0260180:intron | 20.0% |
| !! | AAAAAACAACTTAAAAGGAA+AGG | - | chr2_2:57709888-57709907 | Msa0260180:intron | 20.0% |
| !!! | AAGTTTTTCATAGGAAATAA+GGG | + | chr2_2:57710031-57710050 | None:intergenic | 20.0% |
| !!! | AAAGTTTTTCATAGGAAATA+AGG | + | chr2_2:57710032-57710051 | None:intergenic | 20.0% |
| !! | CTTATTGAAAAAGATAAACA+TGG | + | chr2_2:57710714-57710733 | None:intergenic | 20.0% |
| !! | AGGGATATAGATTATTATTA+TGG | - | chr2_2:57711090-57711109 | Msa0260180:intron | 20.0% |
| !! | ATAGATTATTATTATGGTTG+TGG | - | chr2_2:57711096-57711115 | Msa0260180:intron | 20.0% |
| !! | CATTCATTTAATGATGTATA+TGG | + | chr2_2:57711304-57711323 | None:intergenic | 20.0% |
| !!! | ATAAGCAAAATTCACTTTTT+AGG | + | chr2_2:57711329-57711348 | None:intergenic | 20.0% |
| !! | TCTATAATAAGCACAATAAA+TGG | + | chr2_2:57711392-57711411 | None:intergenic | 20.0% |
| !!! | ATCTTGTTTATCAAAAGTAT+TGG | - | chr2_2:57711532-57711551 | Msa0260180:intron | 20.0% |
| !!! | TTCTAAAATATCTACATATG+AGG | + | chr2_2:57712028-57712047 | None:intergenic | 20.0% |
| !!! | ATGATGATGTGATATTTTTT+TGG | + | chr2_2:57712379-57712398 | None:intergenic | 20.0% |
| !!! | AGACATACTTTTTTTTTTGA+GGG | + | chr2_2:57712482-57712501 | None:intergenic | 20.0% |
| !!! | TAGACATACTTTTTTTTTTG+AGG | + | chr2_2:57712483-57712502 | None:intergenic | 20.0% |
| !!! | ATCCAATATCTAAAATATAC+CGG | + | chr2_2:57712672-57712691 | None:intergenic | 20.0% |
| !! | AGCAAGTTATAATTAAAAAG+TGG | - | chr2_2:57713498-57713517 | Msa0260180:intron | 20.0% |
| !! | CAAATGCAGTATATAATTAA+TGG | + | chr2_2:57713587-57713606 | None:intergenic | 20.0% |
| !! | TGTTATTATGATAATCAGAA+GGG | + | chr2_2:57713754-57713773 | None:intergenic | 20.0% |
| !!! | TTGTTATTATGATAATCAGA+AGG | + | chr2_2:57713755-57713774 | None:intergenic | 20.0% |
| !! | TTCTGATTATCATAATAACA+AGG | - | chr2_2:57713754-57713773 | Msa0260180:intron | 20.0% |
| !! | TCTGATTATCATAATAACAA+GGG | - | chr2_2:57713755-57713774 | Msa0260180:intron | 20.0% |
| !!! | AAATTTAATTTTGGATAGCA+TGG | - | chr2_2:57713802-57713821 | Msa0260180:intron | 20.0% |
| !!! | AATTTAATTTTGGATAGCAT+GGG | - | chr2_2:57713803-57713822 | Msa0260180:intron | 20.0% |
| !!! | GTATAATTTTGATGTCTTGA+AGG | + | chr2_2:57707975-57707994 | None:intergenic | 25.0% |
| ! | CATTAATCAATAATCCCATT+TGG | - | chr2_2:57708835-57708854 | Msa0260180:intron | 25.0% |
| ! | GTTAAATGATAAAATTGTCC+TGG | - | chr2_2:57709400-57709419 | Msa0260180:intron | 25.0% |
| ! | TGCATTGCATAAATGAAAAA+TGG | - | chr2_2:57709914-57709933 | Msa0260180:intron | 25.0% |
| ! | AAATTCAAACAAAAAGAACG+AGG | + | chr2_2:57710354-57710373 | None:intergenic | 25.0% |
| ! | AGATGATGAAAAACTGAAAT+CGG | - | chr2_2:57710435-57710454 | Msa0260180:intron | 25.0% |
| ! | TGAAATCGGTATAAAAAAGA+GGG | - | chr2_2:57710449-57710468 | Msa0260180:intron | 25.0% |
| ! | AAAAAGAGGGAAAATTGAAA+TGG | - | chr2_2:57710462-57710481 | Msa0260180:intron | 25.0% |
| ! | GAAATGGATGGAAAAAAAAA+AGG | - | chr2_2:57710478-57710497 | Msa0260180:intron | 25.0% |
| ! | TAAAACGTGCAAATTATGAA+CGG | - | chr2_2:57710615-57710634 | Msa0260180:intron | 25.0% |
| !!! | AAAGATAAACATGGTTTGTT+TGG | + | chr2_2:57710705-57710724 | None:intergenic | 25.0% |
| ! | ACACCTTCATAAAAATTAGT+TGG | - | chr2_2:57710928-57710947 | Msa0260180:intron | 25.0% |
| !! | ACACCAACTAATTTTTATGA+AGG | + | chr2_2:57710934-57710953 | None:intergenic | 25.0% |
| ! | TGTACAATATATAAAACCAG+CGG | + | chr2_2:57711158-57711177 | None:intergenic | 25.0% |
| ! | TTATATATTGTACAGTTCCA+TGG | - | chr2_2:57711164-57711183 | Msa0260180:intron | 25.0% |
| !!! | TGCTTATATTTTGAAACAGA+GGG | + | chr2_2:57711342-57711361 | None:intergenic | 25.0% |
| !!! | TTGCTTATATTTTGAAACAG+AGG | + | chr2_2:57711341-57711360 | None:intergenic | 25.0% |
| ! | CATTCATTTAATGATGTATG+TGG | - | chr2_2:57711265-57711284 | Msa0260180:intron | 25.0% |
| ! | GATGTATATGGTTCATAATA+TGG | + | chr2_2:57711292-57711311 | None:intergenic | 25.0% |
| !!! | TTGCTTATATTTTGAAACAG+AGG | - | chr2_2:57711341-57711360 | Msa0260180:intron | 25.0% |
| !!! | TGCTTATATTTTGAAACAGA+GGG | - | chr2_2:57711342-57711361 | Msa0260180:intron | 25.0% |
| !! | ATAAGCACAATAAATGGATT+GGG | + | chr2_2:57711386-57711405 | None:intergenic | 25.0% |
| ! | AATAAGCACAATAAATGGAT+TGG | + | chr2_2:57711387-57711406 | None:intergenic | 25.0% |
| ! | TGGCCTAAAGATATAATAAA+GGG | + | chr2_2:57711805-57711824 | None:intergenic | 25.0% |
| ! | TTGGCCTAAAGATATAATAA+AGG | + | chr2_2:57711806-57711825 | None:intergenic | 25.0% |
| !!! | GCATCTGTTTTGTTTATTAT+CGG | - | chr2_2:57712323-57712342 | Msa0260180:intron | 25.0% |
| ! | TAGACATACTTATTAGTCAA+TGG | + | chr2_2:57712451-57712470 | None:intergenic | 25.0% |
| !! | ACTTTGTGGTTTATCTTTTA+GGG | - | chr2_2:57712563-57712582 | Msa0260180:intron | 25.0% |
| !! | TATCTTATAATTTAGGACTG+TGG | - | chr2_2:57712596-57712615 | Msa0260180:intron | 25.0% |
| ! | AAGCTTAATACTATAACTAC+CGG | - | chr2_2:57712650-57712669 | Msa0260180:intron | 25.0% |
| !!! | TACCGGTATATTTTAGATAT+TGG | - | chr2_2:57712667-57712686 | Msa0260180:intron | 25.0% |
| ! | ATTCAAATCCTATAAGGTAA+AGG | + | chr2_2:57712874-57712893 | None:intergenic | 25.0% |
| ! | TATAGGATTCAAATCCTATA+AGG | + | chr2_2:57712880-57712899 | None:intergenic | 25.0% |
| ! | ATAAAAATCCACCTCTATAT+CGG | - | chr2_2:57713043-57713062 | Msa0260180:intron | 25.0% |
| ! | AAAGAAATATCCACAAGAAA+CGG | + | chr2_2:57713070-57713089 | None:intergenic | 25.0% |
| !! | ATAGAAGACACATTTTATGA+AGG | - | chr2_2:57713405-57713424 | Msa0260180:intron | 25.0% |
| !! | GTCTTTTAACAAATGTCAAT+AGG | + | chr2_2:57713449-57713468 | None:intergenic | 25.0% |
| ! | ACACTTTCATAAAAACTAGT+TGG | + | chr2_2:57713473-57713492 | None:intergenic | 25.0% |
| ! | TTTGCTTATATTATAGTGAC+CGG | + | chr2_2:57713906-57713925 | None:intergenic | 25.0% |
| ! | GTCTATATCTAGTAATGATA+TGG | - | chr2_2:57713964-57713983 | Msa0260180:intron | 25.0% |
| ! | TATATTGTTGTAATGGTACT+TGG | - | chr2_2:57714067-57714086 | Msa0260180:intron | 25.0% |
| ! | TGCAGAAACATTGAAATTTA+TGG | + | chr2_2:57714226-57714245 | None:intergenic | 25.0% |
| ! | GTATTAGTTATGCACTATTA+TGG | - | chr2_2:57714393-57714412 | Msa0260180:five_prime_UTR | 25.0% |
| ATGGAGAAGAAATCATTAGT+TGG | - | chr2_2:57707754-57707773 | Msa0260180:three_prime_UTR | 30.0% | |
| AAATTGAACTTTGGATAGCA+TGG | - | chr2_2:57708256-57708275 | Msa0260180:intron | 30.0% | |
| AATTGAACTTTGGATAGCAT+GGG | - | chr2_2:57708257-57708276 | Msa0260180:intron | 30.0% | |
| AGAAACTGTTAAATGGATCA+TGG | - | chr2_2:57708622-57708641 | Msa0260180:intron | 30.0% | |
| ATATATGTATCCATGCTTGT+TGG | + | chr2_2:57708655-57708674 | None:intergenic | 30.0% | |
| CAAGCATGGATACATATATA+TGG | - | chr2_2:57708656-57708675 | Msa0260180:intron | 30.0% | |
| TAGTACCTAAATGTTGGAAA+TGG | + | chr2_2:57708861-57708880 | None:intergenic | 30.0% | |
| AGTCATTAGTACCTAAATGT+TGG | + | chr2_2:57708867-57708886 | None:intergenic | 30.0% | |
| CATTTAGGTACTAATTGTCT+TGG | - | chr2_2:57708904-57708923 | Msa0260180:intron | 30.0% | |
| GAGAGATTTGCAAAACATTA+AGG | + | chr2_2:57709029-57709048 | None:intergenic | 30.0% | |
| !! | TGCTCTTGTGTTTCTATTTT+TGG | - | chr2_2:57709163-57709182 | Msa0260180:intron | 30.0% |
| TTGTAGTTTACCAAAAACAC+AGG | + | chr2_2:57709432-57709451 | None:intergenic | 30.0% | |
| !! | TTTGTTGATTCTGTCGAATA+AGG | + | chr2_2:57709588-57709607 | None:intergenic | 30.0% |
| TAATTACAAGTTTCCTTAGG+CGG | - | chr2_2:57709657-57709676 | Msa0260180:intron | 30.0% | |
| ! | TTTTTGCTAAGCTAAGAGTA+AGG | + | chr2_2:57709866-57709885 | None:intergenic | 30.0% |
| ! | AGTCTTTTATCTCTGTAACT+TGG | - | chr2_2:57709967-57709986 | Msa0260180:intron | 30.0% |
| GATAAGTTACATTCGATAGA+TGG | + | chr2_2:57710222-57710241 | None:intergenic | 30.0% | |
| TATCGAATGTAACTTATCTC+TGG | - | chr2_2:57710224-57710243 | Msa0260180:intron | 30.0% | |
| ATCGAATGTAACTTATCTCT+GGG | - | chr2_2:57710225-57710244 | Msa0260180:intron | 30.0% | |
| CGAAGTTAGAACTTTATCTT+TGG | + | chr2_2:57710257-57710276 | None:intergenic | 30.0% | |
| AAAAGCAATATAGAGTTACC+TGG | + | chr2_2:57710327-57710346 | None:intergenic | 30.0% | |
| ! | TTTTATGAAAGGGTTGAAAG+AGG | + | chr2_2:57710396-57710415 | None:intergenic | 30.0% |
| CTGAAATCGGTATAAAAAAG+AGG | - | chr2_2:57710448-57710467 | Msa0260180:intron | 30.0% | |
| ! | CTAGAAGACACATTTTATGA+AGG | + | chr2_2:57710996-57711015 | None:intergenic | 30.0% |
| !! | ATGTTGAAAACTTTGAGTTG+CGG | + | chr2_2:57711201-57711220 | None:intergenic | 30.0% |
| ! | AACGTATACTCACATTTTCA+AGG | + | chr2_2:57711431-57711450 | None:intergenic | 30.0% |
| ATGTGAGTATACGTTACATT+CGG | - | chr2_2:57711436-57711455 | Msa0260180:intron | 30.0% | |
| GCTCCCTTTATTATATCTTT+AGG | - | chr2_2:57711799-57711818 | Msa0260180:intron | 30.0% | |
| ! | TGGGCTAGAAAAATAGATAT+TGG | + | chr2_2:57711825-57711844 | None:intergenic | 30.0% |
| AAAAGGAAATGCCAAAAGAA+AGG | + | chr2_2:57711942-57711961 | None:intergenic | 30.0% | |
| ACAAATATCTCTCTCACAAA+AGG | + | chr2_2:57711959-57711978 | None:intergenic | 30.0% | |
| TATGTGAGTGATTCATCATT+AGG | + | chr2_2:57712187-57712206 | None:intergenic | 30.0% | |
| TAATGATGAATCACTCACAT+AGG | - | chr2_2:57712186-57712205 | Msa0260180:intron | 30.0% | |
| CATCACAAACAATTTCAATG+CGG | - | chr2_2:57712396-57712415 | Msa0260180:intron | 30.0% | |
| TAGGTATACTACTTAGTCAA+TGG | + | chr2_2:57712534-57712553 | None:intergenic | 30.0% | |
| ! | ATAAACCACAAAGTCTCTTT+TGG | + | chr2_2:57712557-57712576 | None:intergenic | 30.0% |
| ! | GACTTTGTGGTTTATCTTTT+AGG | - | chr2_2:57712562-57712581 | Msa0260180:intron | 30.0% |
| !!! | AACTAGTGATTTGTTTTCCA+TGG | + | chr2_2:57713301-57713320 | None:intergenic | 30.0% |
| ATGGAAAACAAATCACTAGT+TGG | - | chr2_2:57713300-57713319 | Msa0260180:intron | 30.0% | |
| ! | TAGTGTTGTTCTTCGAAAAA+TGG | - | chr2_2:57713836-57713855 | Msa0260180:intron | 30.0% |
| GTTCTTCGAAAAATGGAATT+TGG | - | chr2_2:57713843-57713862 | Msa0260180:intron | 30.0% | |
| TTCGAAAAATGGAATTTGGA+TGG | - | chr2_2:57713847-57713866 | Msa0260180:intron | 30.0% | |
| AACAAAGCACACTTAATTAG+TGG | - | chr2_2:57714194-57714213 | Msa0260180:intron | 30.0% | |
| AATTATTTCAAAGACAACGC+AGG | + | chr2_2:57714349-57714368 | None:intergenic | 30.0% | |
| TTAAGTGTTTGTGTCTAGTG+TGG | + | chr2_2:57707689-57707708 | None:intergenic | 35.0% | |
| TTTGACACATGATGTAGACT+TGG | + | chr2_2:57707946-57707965 | None:intergenic | 35.0% | |
| TCTGAATGCAGAAGAAATTG+TGG | - | chr2_2:57708456-57708475 | Msa0260180:intron | 35.0% | |
| GTGCACTAGAAACTGTTAAA+TGG | - | chr2_2:57708615-57708634 | Msa0260180:intron | 35.0% | |
| AATGTTGGAAATGGCCAAAT+GGG | + | chr2_2:57708852-57708871 | None:intergenic | 35.0% | |
| AAATGTTGGAAATGGCCAAA+TGG | + | chr2_2:57708853-57708872 | None:intergenic | 35.0% | |
| TTTGGCCATTTCCAACATTT+AGG | - | chr2_2:57708853-57708872 | Msa0260180:intron | 35.0% | |
| TTGCAAAACATTAAGGTGAG+TGG | + | chr2_2:57709022-57709041 | None:intergenic | 35.0% | |
| ! | AATTTTGTTGATCCGTCTGA+TGG | - | chr2_2:57709198-57709217 | Msa0260180:intron | 35.0% |
| GCCTAATTACAAGTTTCCTT+AGG | - | chr2_2:57709654-57709673 | Msa0260180:intron | 35.0% | |
| GCCTAAGGAAACTTGTAATT+AGG | + | chr2_2:57709658-57709677 | None:intergenic | 35.0% | |
| TACATTCGATAGATGGTGAT+GGG | + | chr2_2:57710215-57710234 | None:intergenic | 35.0% | |
| TTACATTCGATAGATGGTGA+TGG | + | chr2_2:57710216-57710235 | None:intergenic | 35.0% | |
| TAAAAACACAGACTAACACC+AGG | - | chr2_2:57710306-57710325 | Msa0260180:intron | 35.0% | |
| AGAGGGAAAATTGAAATGGA+TGG | - | chr2_2:57710466-57710485 | Msa0260180:intron | 35.0% | |
| CGGTAGGCATAATGAAATAA+AGG | + | chr2_2:57711129-57711148 | None:intergenic | 35.0% | |
| ACAATATATAAAACCAGCGG+TGG | + | chr2_2:57711155-57711174 | None:intergenic | 35.0% | |
| !! | CACATTTTCAAGGTGTACAA+TGG | + | chr2_2:57711421-57711440 | None:intergenic | 35.0% |
| CTTGCAATTTCTTCCATCTA+AGG | - | chr2_2:57712266-57712285 | Msa0260180:intron | 35.0% | |
| GTTCTTAAGTACTCCTTAGA+TGG | + | chr2_2:57712282-57712301 | None:intergenic | 35.0% | |
| GGATTCAATGTCTCTTAGAT+TGG | + | chr2_2:57712513-57712532 | None:intergenic | 35.0% | |
| !!! | TGGTTTATCTTTTAGGGTTG+AGG | - | chr2_2:57712569-57712588 | Msa0260180:intron | 35.0% |
| CAAATCCTATAAGGTAAAGG+TGG | + | chr2_2:57712871-57712890 | None:intergenic | 35.0% | |
| GTAACGATACATTGTGAAGT+CGG | + | chr2_2:57712906-57712925 | None:intergenic | 35.0% | |
| TACTAGAAAGACAACTCATG+TGG | - | chr2_2:57712923-57712942 | Msa0260180:intron | 35.0% | |
| ACTAGAAAGACAACTCATGT+GGG | - | chr2_2:57712924-57712943 | Msa0260180:intron | 35.0% | |
| GACATATATATAGCCCCAAA+GGG | + | chr2_2:57713184-57713203 | None:intergenic | 35.0% | |
| AGACATATATATAGCCCCAA+AGG | + | chr2_2:57713185-57713204 | None:intergenic | 35.0% | |
| TGCTAAAAGACACTCTTTAG+AGG | + | chr2_2:57713560-57713579 | None:intergenic | 35.0% | |
| CTTATATTATAGTGACCGGA+GGG | + | chr2_2:57713902-57713921 | None:intergenic | 35.0% | |
| AAATTGTGGTGATTGAAGCA+AGG | - | chr2_2:57714099-57714118 | Msa0260180:intron | 35.0% | |
| CATTTGGCTGATACATATAG+AGG | - | chr2_2:57714131-57714150 | Msa0260180:intron | 35.0% | |
| AGAAGAAATTGTGGTGACTG+AGG | - | chr2_2:57708465-57708484 | Msa0260180:intron | 40.0% | |
| GGCAAACACTTGTGAGAATT+TGG | - | chr2_2:57708486-57708505 | Msa0260180:intron | 40.0% | |
| AACACTTGTGAGAATTTGGC+TGG | - | chr2_2:57708490-57708509 | Msa0260180:intron | 40.0% | |
| AGAATTTGGCTGGTACATTC+AGG | - | chr2_2:57708500-57708519 | Msa0260180:intron | 40.0% | |
| GAATTTGGCTGGTACATTCA+GGG | - | chr2_2:57708501-57708520 | Msa0260180:intron | 40.0% | |
| AATTTGGCTGGTACATTCAG+GGG | - | chr2_2:57708502-57708521 | Msa0260180:intron | 40.0% | |
| ! | CAGTTTGAGTTACCGAAACA+TGG | + | chr2_2:57708529-57708548 | None:intergenic | 40.0% |
| !! | ACCAAAGAGCATTTGGTTAG+TGG | - | chr2_2:57708565-57708584 | Msa0260180:intron | 40.0% |
| ! | TGGATTTTCTCCAACAAGCA+TGG | - | chr2_2:57708642-57708661 | Msa0260180:intron | 40.0% |
| ACATTAAGGTGAGTGGATGA+TGG | + | chr2_2:57709015-57709034 | None:intergenic | 40.0% | |
| TGCAAATCTCTCGTATCAGT+TGG | - | chr2_2:57709037-57709056 | Msa0260180:intron | 40.0% | |
| !! | AAGAGCACTTCTTAACTTGC+CGG | + | chr2_2:57709150-57709169 | None:intergenic | 40.0% |
| ATCACATCCTAACCATCAGA+CGG | + | chr2_2:57709213-57709232 | None:intergenic | 40.0% | |
| CAAAAACACAGGTAAACACC+AGG | + | chr2_2:57709421-57709440 | None:intergenic | 40.0% | |
| ! | CTGGTGTTTACCTGTGTTTT+TGG | - | chr2_2:57709419-57709438 | Msa0260180:intron | 40.0% |
| CAAATAAAAACAGCCGCCTA+AGG | + | chr2_2:57709673-57709692 | None:intergenic | 40.0% | |
| GACAAAGATATACAAGAGGG+GGG | + | chr2_2:57709741-57709760 | None:intergenic | 40.0% | |
| GGACAAAGATATACAAGAGG+GGG | + | chr2_2:57709742-57709761 | None:intergenic | 40.0% | |
| GGGACAAAGATATACAAGAG+GGG | + | chr2_2:57709743-57709762 | None:intergenic | 40.0% | |
| GGGGACAAAGATATACAAGA+GGG | + | chr2_2:57709744-57709763 | None:intergenic | 40.0% | |
| AGGGGACAAAGATATACAAG+AGG | + | chr2_2:57709745-57709764 | None:intergenic | 40.0% | |
| AGGAAAAAGTTGAAGCAACG+AGG | - | chr2_2:57710498-57710517 | Msa0260180:intron | 40.0% | |
| CTAAAAGACACCTTCATAGC+TGG | + | chr2_2:57710855-57710874 | None:intergenic | 40.0% | |
| ! | TTTTAGCAATCCACACCTCA+AGG | - | chr2_2:57710869-57710888 | Msa0260180:intron | 40.0% |
| AAAGTGGAAATCACACCTTG+AGG | + | chr2_2:57710887-57710906 | None:intergenic | 40.0% | |
| TATAAAACCAGCGGTGGAAT+CGG | + | chr2_2:57711149-57711168 | None:intergenic | 40.0% | |
| ! | ACAGAGGGAGTATAACATCA+AGG | - | chr2_2:57711357-57711376 | Msa0260180:intron | 40.0% |
| ! | TTTCAACCCGACCTTTCTTT+TGG | - | chr2_2:57711928-57711947 | Msa0260180:intron | 40.0% |
| GAAATGCCAAAAGAAAGGTC+GGG | + | chr2_2:57711937-57711956 | None:intergenic | 40.0% | |
| GGAAATGCCAAAAGAAAGGT+CGG | + | chr2_2:57711938-57711957 | None:intergenic | 40.0% | |
| ACCTACCAAAAGAGACTTTG+TGG | - | chr2_2:57712549-57712568 | Msa0260180:intron | 40.0% | |
| ! | ACCACAAAGTCTCTTTTGGT+AGG | + | chr2_2:57712553-57712572 | None:intergenic | 40.0% |
| CTATAAGGTAAAGGTGGCTA+AGG | + | chr2_2:57712865-57712884 | None:intergenic | 40.0% | |
| CTTAGCCACCTTTACCTTAT+AGG | - | chr2_2:57712863-57712882 | Msa0260180:intron | 40.0% | |
| CATTGTGAAGTCGGCAATAT+AGG | + | chr2_2:57712897-57712916 | None:intergenic | 40.0% | |
| AGAGAGAAAAGTCTTGCATG+GGG | + | chr2_2:57713005-57713024 | None:intergenic | 40.0% | |
| CAGAGAGAAAAGTCTTGCAT+GGG | + | chr2_2:57713006-57713025 | None:intergenic | 40.0% | |
| TCAGAGAGAAAAGTCTTGCA+TGG | + | chr2_2:57713007-57713026 | None:intergenic | 40.0% | |
| !! | AGAGGTGGATTTTTATCGTC+AGG | + | chr2_2:57713039-57713058 | None:intergenic | 40.0% |
| TAGCTATTGAAGCTCCCTTT+GGG | - | chr2_2:57713167-57713186 | Msa0260180:intron | 40.0% | |
| ACTTCATCTTCAGTAAGCCA+TGG | - | chr2_2:57713281-57713300 | Msa0260180:intron | 40.0% | |
| AAGTGGATAATCACACCTTG+AGG | - | chr2_2:57713515-57713534 | Msa0260180:CDS | 40.0% | |
| ! | TTTTAGCAAGTCACACCTCA+AGG | + | chr2_2:57713533-57713552 | None:intergenic | 40.0% |
| GCTTATATTATAGTGACCGG+AGG | + | chr2_2:57713903-57713922 | None:intergenic | 40.0% | |
| CTTGGATGCAGAAGAAATTG+TGG | - | chr2_2:57714085-57714104 | Msa0260180:intron | 40.0% | |
| GCACTCAAAACTGTTAAGTG+TGG | - | chr2_2:57714243-57714262 | Msa0260180:intron | 40.0% | |
| CTCAAAACTGTTAAGTGTGG+AGG | - | chr2_2:57714246-57714265 | Msa0260180:intron | 40.0% | |
| AAACTGTTAAGTGTGGAGGA+TGG | - | chr2_2:57714250-57714269 | Msa0260180:intron | 40.0% | |
| ATGTTTCCTTCCATGTGTCT+TGG | + | chr2_2:57714291-57714310 | None:intergenic | 40.0% | |
| CAACAAAGAGAACGAGGAAG+AGG | + | chr2_2:57707789-57707808 | None:intergenic | 45.0% | |
| TACGTGCAACAAAGAGAACG+AGG | + | chr2_2:57707795-57707814 | None:intergenic | 45.0% | |
| ACATTCAGGGGACCATGTTT+CGG | - | chr2_2:57708514-57708533 | Msa0260180:intron | 45.0% | |
| !! | CTGCAGAACCAAAGAGCATT+TGG | - | chr2_2:57708558-57708577 | Msa0260180:intron | 45.0% |
| GCCACTAACCAAATGCTCTT+TGG | + | chr2_2:57708569-57708588 | None:intergenic | 45.0% | |
| !! | AAGAGCATTTGGTTAGTGGC+AGG | - | chr2_2:57708569-57708588 | Msa0260180:intron | 45.0% |
| TGTTGATCCGTCTGATGGTT+AGG | - | chr2_2:57709203-57709222 | Msa0260180:intron | 45.0% | |
| TTGACCTTGGCGACATAGAA+TGG | - | chr2_2:57709784-57709803 | Msa0260180:intron | 45.0% | |
| TGACCTTGGCGACATAGAAT+GGG | - | chr2_2:57709785-57709804 | Msa0260180:intron | 45.0% | |
| CTCGAAATGCCAACCTAGTT+GGG | - | chr2_2:57709813-57709832 | Msa0260180:intron | 45.0% | |
| AAAACGACGACATCCCAACT+AGG | + | chr2_2:57709829-57709848 | None:intergenic | 45.0% | |
| AGAGTAAGGACAGACACCAA+GGG | + | chr2_2:57709852-57709871 | None:intergenic | 45.0% | |
| AAGAGTAAGGACAGACACCA+AGG | + | chr2_2:57709853-57709872 | None:intergenic | 45.0% | |
| GCAACGAGGCACAAATTGAA+CGG | - | chr2_2:57710512-57710531 | Msa0260180:intron | 45.0% | |
| TTGCTAGAAGCCAGCTATGA+AGG | - | chr2_2:57710842-57710861 | Msa0260180:intron | 45.0% | |
| CAAGAAACGGACCGATATAG+AGG | + | chr2_2:57713057-57713076 | None:intergenic | 45.0% | |
| CTATATCGGTCCGTTTCTTG+TGG | - | chr2_2:57713057-57713076 | Msa0260180:intron | 45.0% | |
| CTAGCTATTGAAGCTCCCTT+TGG | - | chr2_2:57713166-57713185 | Msa0260180:intron | 45.0% | |
| AGCTATTGAAGCTCCCTTTG+GGG | - | chr2_2:57713168-57713187 | Msa0260180:intron | 45.0% | |
| CAACAAAGAGAACGAGGAAG+AGG | + | chr2_2:57707789-57707808 | None:intergenic | 45.0% | |
| TACGTGCAACAAAGAGAACG+AGG | + | chr2_2:57707795-57707814 | None:intergenic | 45.0% | |
| ! | TTTTTACGCACTACACCCTC+CGG | - | chr2_2:57713884-57713903 | Msa0260180:intron | 45.0% |
| AGCAAGGACTTGTGAGCATT+TGG | - | chr2_2:57714115-57714134 | Msa0260180:intron | 45.0% | |
| TTCTCCAACACCAAGACACA+TGG | - | chr2_2:57714278-57714297 | Msa0260180:intron | 45.0% | |
| !! | TGAAAAATTTATTAAAAAAA+GGG | + | chr2_2:57709764-57709783 | None:intergenic | 5.0% |
| !! | ATGAAAAATTTATTAAAAAA+AGG | + | chr2_2:57709765-57709784 | None:intergenic | 5.0% |
| !!! | ATTATTATTATGTTTTTTTT+AGG | - | chr2_2:57711070-57711089 | Msa0260180:intron | 5.0% |
| !!! | TTATTATTATGTTTTTTTTA+GGG | - | chr2_2:57711071-57711090 | Msa0260180:intron | 5.0% |
| !!! | TTTCTTTTTTTAAAAAAAAA+AGG | + | chr2_2:57712632-57712651 | None:intergenic | 5.0% |
| !!! | TATTAATACAAATTTAATTT+TGG | - | chr2_2:57713793-57713812 | Msa0260180:intron | 5.0% |
| !!! | TTATTTTTATTTTAAATGTT+TGG | - | chr2_2:57714006-57714025 | Msa0260180:intron | 5.0% |
| ATTTGGTTAGTGGCAGGTGC+AGG | - | chr2_2:57708575-57708594 | Msa0260180:intron | 50.0% | |
| TTTGGTTAGTGGCAGGTGCA+GGG | - | chr2_2:57708576-57708595 | Msa0260180:intron | 50.0% | |
| GCAGGGATGACTTTCGTTGT+TGG | - | chr2_2:57708593-57708612 | Msa0260180:intron | 50.0% | |
| GATATACAAGAGGGGGGACT+AGG | + | chr2_2:57709735-57709754 | None:intergenic | 50.0% | |
| GACCTTGGCGACATAGAATG+GGG | - | chr2_2:57709786-57709805 | Msa0260180:intron | 50.0% | |
| ACCTTGGCGACATAGAATGG+GGG | - | chr2_2:57709787-57709806 | Msa0260180:intron | 50.0% | |
| ! | CCAACTAGGTTGGCATTTCG+AGG | + | chr2_2:57709815-57709834 | None:intergenic | 50.0% |
| CCTCGAAATGCCAACCTAGT+TGG | - | chr2_2:57709812-57709831 | Msa0260180:intron | 50.0% | |
| GGAAATCACACCTTGAGGTG+TGG | + | chr2_2:57710882-57710901 | None:intergenic | 50.0% | |
| !! | CTTTGAGTTGCGGCGTAACA+AGG | + | chr2_2:57711191-57711210 | None:intergenic | 50.0% |
| GAAACGGACCGATATAGAGG+TGG | + | chr2_2:57713054-57713073 | None:intergenic | 50.0% | |
| CAGCTAGCATCTGTGAAGCA+TGG | + | chr2_2:57714158-57714177 | None:intergenic | 50.0% | |
| ! | CCTTCCATGTGTCTTGGTGT+TGG | + | chr2_2:57714285-57714304 | None:intergenic | 50.0% |
| CCAACACCAAGACACATGGA+AGG | - | chr2_2:57714282-57714301 | Msa0260180:intron | 50.0% | |
| ACCCCCATTCTATGTCGCCA+AGG | + | chr2_2:57709791-57709810 | None:intergenic | 55.0% | |
| CGACGACATCCCAACTAGGT+TGG | + | chr2_2:57709825-57709844 | None:intergenic | 55.0% | |
| !! | GGGATGTCGTCGTTTTCCCT+TGG | - | chr2_2:57709833-57709852 | Msa0260180:intron | 55.0% |
| AAACCAGCGGTGGAATCGGT+AGG | + | chr2_2:57711145-57711164 | None:intergenic | 55.0% | |
| TTGCGGCGTAACAAGGACCA+TGG | + | chr2_2:57711184-57711203 | None:intergenic | 55.0% | |
| !! | ATGCCTACCGATTCCACCGC+TGG | - | chr2_2:57711139-57711158 | Msa0260180:intron | 60.0% |
| TGCATGGGGACGTGTACGAG+TGG | + | chr2_2:57712991-57713010 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 57707643 | 57714474 | 57707643 | ID=Msa0260180;Name=Msa0260180 |
| chr2_2 | mRNA | 57707643 | 57714474 | 57707643 | ID=Msa0260180-mRNA-1;Parent=Msa0260180;Name=Msa0260180-mRNA-1;_AED=0.34;_eAED=0.34;_QI=111|0.5|0.66|1|0|0|3|215|120 |
| chr2_2 | exon | 57707643 | 57708021 | 57707643 | ID=Msa0260180-mRNA-1:exon:17616;Parent=Msa0260180-mRNA-1 |
| chr2_2 | exon | 57713510 | 57713650 | 57713510 | ID=Msa0260180-mRNA-1:exon:17615;Parent=Msa0260180-mRNA-1 |
| chr2_2 | exon | 57714306 | 57714474 | 57714306 | ID=Msa0260180-mRNA-1:exon:17614;Parent=Msa0260180-mRNA-1 |
| chr2_2 | five_prime_UTR | 57714364 | 57714474 | 57714364 | ID=Msa0260180-mRNA-1:five_prime_utr;Parent=Msa0260180-mRNA-1 |
| chr2_2 | CDS | 57714306 | 57714363 | 57714306 | ID=Msa0260180-mRNA-1:cds;Parent=Msa0260180-mRNA-1 |
| chr2_2 | CDS | 57713510 | 57713650 | 57713510 | ID=Msa0260180-mRNA-1:cds;Parent=Msa0260180-mRNA-1 |
| chr2_2 | CDS | 57707858 | 57708021 | 57707858 | ID=Msa0260180-mRNA-1:cds;Parent=Msa0260180-mRNA-1 |
| chr2_2 | three_prime_UTR | 57707643 | 57707857 | 57707643 | ID=Msa0260180-mRNA-1:three_prime_utr;Parent=Msa0260180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
