AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0495270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0495270 MtrunA17_CPg0492851 100.000 126 0 0 65 190 1 126 3.12e-89 265
Msa0495270 MtrunA17_Chr4g0015731 100.000 126 0 0 65 190 1 126 3.12e-89 265
Msa0495270 MtrunA17_Chr4g0016821 100.000 126 0 0 65 190 1 126 3.12e-89 265
Msa0495270 MtrunA17_Chr4g0016981 78.313 83 3 1 108 190 42 109 1.48e-38 129
Msa0495270 MtrunA17_Chr5g0403621 96.667 60 2 0 1 60 86 145 3.50e-36 124
Msa0495270 MtrunA17_CPg0492871 98.333 60 1 0 1 60 86 145 1.27e-35 124
Msa0495270 MtrunA17_Chr4g0015721 98.333 60 1 0 1 60 86 145 1.27e-35 124
Msa0495270 MtrunA17_Chr4g0016811 98.333 60 1 0 1 60 95 154 1.30e-35 125
Msa0495270 MtrunA17_Chr3g0141111 94.737 57 3 0 1 57 15 71 1.05e-33 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0495270 ATCG00540.1 90.909 121 11 0 70 190 1 121 6.20e-75 228
Msa0495270 ATCG00530.1 65.000 60 21 0 1 60 86 145 1.58e-19 83.2

Find 35 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTAAGTGGTTATTCTATT+AGG 0.170612 3_4:-24237236 Msa0495270:CDS
TCTAAGTGGTTATTCTATTA+GGG 0.213858 3_4:-24237235 Msa0495270:CDS
TAGAATAACCACTTAGAATA+AGG 0.296044 3_4:+24237241 None:intergenic
CTACAGGCTTATTAGCTAAA+TGG 0.299374 3_4:+24236516 None:intergenic
TTTGAATTGGCCCCTCCTCT+TGG 0.315366 3_4:-24236347 Msa0495270:CDS
AACTCATTATTCTTAACTCT+TGG 0.323937 3_4:-24237203 Msa0495270:CDS
GTTAAACAAGTTCTTGCTAA+TGG 0.346567 3_4:-24236419 Msa0495270:CDS
TTGAATTGGCCCCTCCTCTT+GGG 0.364168 3_4:-24236346 Msa0495270:CDS
GGTTGTTCGTCTCTATCAAT+TGG 0.367131 3_4:+24237313 None:intergenic
TGTTTAACTTGCATATCATA+AGG 0.412925 3_4:+24236434 None:intergenic
ACTCATTATTCTTAACTCTT+GGG 0.414290 3_4:-24237202 Msa0495270:CDS
AATGGGATATGCATTTGAAA+TGG 0.432612 3_4:+24236601 None:intergenic
GATCATGAGCAATACGGAAA+TGG 0.442149 3_4:+24236643 None:intergenic
AAATCGTATGGATACGGTCT+TGG 0.446811 3_4:+24237292 None:intergenic
ATATGTTTCCTTATTCTAAG+TGG 0.468100 3_4:-24237249 Msa0495270:CDS
TACAGAAATGCAAAATCGTA+TGG 0.481344 3_4:+24237280 None:intergenic
ACTGCTTCAAATACAGTATC+GGG 0.488265 3_4:+24236467 None:intergenic
AAAAGCATTTCTAGTTTGCA+TGG 0.489913 3_4:+24236694 None:intergenic
AACTGCTTCAAATACAGTAT+CGG 0.494328 3_4:+24236466 None:intergenic
ATGGGATATGCATTTGAAAT+GGG 0.502392 3_4:+24236602 None:intergenic
GAGCAATACGGAAATGGATC+GGG 0.505456 3_4:+24236649 None:intergenic
TATATAGATCATGAGCAATA+CGG 0.512581 3_4:+24236637 None:intergenic
ATCCGCCCGGTAGCTTCTCT+CGG 0.516777 3_4:+24236554 None:intergenic
TAATAAGCCTGTAGATATTG+AGG 0.521759 3_4:-24236507 Msa0495270:CDS
TGTGGAACCTCAATATCTAC+AGG 0.524236 3_4:+24236500 None:intergenic
CTAAGTGGTTATTCTATTAG+GGG 0.545375 3_4:-24237234 Msa0495270:CDS
AATGCAAAATCGTATGGATA+CGG 0.548969 3_4:+24237286 None:intergenic
AAAATCCGAGAGAAGCTACC+GGG 0.554646 3_4:-24236559 Msa0495270:CDS
TGAGCAATACGGAAATGGAT+CGG 0.555873 3_4:+24236648 None:intergenic
GGGGCCAATTCAAAACCCTC+TGG 0.574508 3_4:+24236356 None:intergenic
GAAAATCCGAGAGAAGCTAC+CGG 0.606144 3_4:-24236560 Msa0495270:CDS
ATTAGCACATACAATCCGCC+CGG 0.633238 3_4:+24236541 None:intergenic
AGATATTGAGGTTCCACAAG+CGG 0.653295 3_4:-24236495 Msa0495270:CDS
GTATCGGGAAGTACCGCTTG+TGG 0.687149 3_4:+24236482 None:intergenic
ATCCGAGAGAAGCTACCGGG+CGG 0.767274 3_4:-24236556 Msa0495270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACATAAATCAGTTAATAAA+AGG + chr3_4:24236540-24236559 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG - chr3_4:24236541-24236560 Msa0495270:CDS 15.0%
!!! TAGATACAATTTTAAAATAC+TGG - chr3_4:24236677-24236696 Msa0495270:CDS 15.0%
!! AAAATTTCTACAATAAGATT+AGG + chr3_4:24236936-24236955 None:intergenic 15.0%
!! TACATAAATCAGTTAATAAA+AGG + chr3_4:24236540-24236559 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG - chr3_4:24236541-24236560 Msa0495270:CDS 15.0%
!!! TAGATACAATTTTAAAATAC+TGG - chr3_4:24236677-24236696 Msa0495270:CDS 15.0%
!! AAAATTTCTACAATAAGATT+AGG + chr3_4:24236936-24236955 None:intergenic 15.0%
!!! AAAATTGTATCTAAAATGAC+TGG + chr3_4:24236670-24236689 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG + chr3_4:24236777-24236796 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG + chr3_4:24236868-24236887 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG - chr3_4:24236937-24236956 Msa0495270:intron 20.0%
!!! AAAATTGTATCTAAAATGAC+TGG + chr3_4:24236670-24236689 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG + chr3_4:24236777-24236796 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG + chr3_4:24236868-24236887 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG - chr3_4:24236937-24236956 Msa0495270:intron 20.0%
! ATATGTTTCCTTATTCTAAG+TGG - chr3_4:24236418-24236437 Msa0495270:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG + chr3_4:24236429-24236448 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG - chr3_4:24236431-24236450 Msa0495270:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG - chr3_4:24236432-24236451 Msa0495270:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG - chr3_4:24236464-24236483 Msa0495270:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG - chr3_4:24236465-24236484 Msa0495270:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG - chr3_4:24236628-24236647 Msa0495270:CDS 25.0%
! GAGATACACGATTTAAATAA+CGG + chr3_4:24236708-24236727 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG - chr3_4:24236886-24236905 Msa0495270:intron 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG - chr3_4:24236891-24236910 Msa0495270:intron 25.0%
!!! AAATAGCAGAATAATGGATA+GGG - chr3_4:24236892-24236911 Msa0495270:intron 25.0%
! TTTCTACAATAAGATTAGGT+AGG + chr3_4:24236932-24236951 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG - chr3_4:24236949-24236968 Msa0495270:intron 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG - chr3_4:24236979-24236998 Msa0495270:intron 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG - chr3_4:24236986-24237005 Msa0495270:intron 25.0%
! TATATAGATCATGAGCAATA+CGG + chr3_4:24237033-24237052 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG + chr3_4:24237236-24237255 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG - chr3_4:24237258-24237277 Msa0495270:CDS 25.0%
! ATATGTTTCCTTATTCTAAG+TGG - chr3_4:24236418-24236437 Msa0495270:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG + chr3_4:24236429-24236448 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG - chr3_4:24236431-24236450 Msa0495270:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG - chr3_4:24236432-24236451 Msa0495270:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG - chr3_4:24236464-24236483 Msa0495270:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG - chr3_4:24236465-24236484 Msa0495270:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG - chr3_4:24236628-24236647 Msa0495270:CDS 25.0%
! GAGATACACGATTTAAATAA+CGG + chr3_4:24236708-24236727 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG - chr3_4:24236886-24236905 Msa0495270:intron 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG - chr3_4:24236891-24236910 Msa0495270:intron 25.0%
!!! AAATAGCAGAATAATGGATA+GGG - chr3_4:24236892-24236911 Msa0495270:intron 25.0%
! TTTCTACAATAAGATTAGGT+AGG + chr3_4:24236932-24236951 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG - chr3_4:24236949-24236968 Msa0495270:intron 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG - chr3_4:24236979-24236998 Msa0495270:intron 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG - chr3_4:24236986-24237005 Msa0495270:intron 25.0%
! TATATAGATCATGAGCAATA+CGG + chr3_4:24237033-24237052 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG + chr3_4:24237236-24237255 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG - chr3_4:24237258-24237277 Msa0495270:CDS 25.0%
AATGCAAAATCGTATGGATA+CGG + chr3_4:24236384-24236403 None:intergenic 30.0%
TACAGAAATGCAAAATCGTA+TGG + chr3_4:24236390-24236409 None:intergenic 30.0%
CTAAGTGGTTATTCTATTAG+GGG - chr3_4:24236433-24236452 Msa0495270:CDS 30.0%
! ATCTAAAATGACTGGAAAAG+TGG + chr3_4:24236662-24236681 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG + chr3_4:24236730-24236749 None:intergenic 30.0%
TCGTATTCTTCCTATATTCT+AGG - chr3_4:24236855-24236874 Msa0495270:intron 30.0%
AATAAGATTAGGTAGGTTAC+TGG + chr3_4:24236925-24236944 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG + chr3_4:24236976-24236995 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG + chr3_4:24237068-24237087 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG + chr3_4:24237069-24237088 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG - chr3_4:24237160-24237179 Msa0495270:intron 30.0%
AACTGCTTCAAATACAGTAT+CGG + chr3_4:24237204-24237223 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG - chr3_4:24237248-24237267 Msa0495270:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG - chr3_4:24237257-24237276 Msa0495270:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG - chr3_4:24237259-24237278 Msa0495270:CDS 30.0%
AATGCAAAATCGTATGGATA+CGG + chr3_4:24236384-24236403 None:intergenic 30.0%
TACAGAAATGCAAAATCGTA+TGG + chr3_4:24236390-24236409 None:intergenic 30.0%
CTAAGTGGTTATTCTATTAG+GGG - chr3_4:24236433-24236452 Msa0495270:CDS 30.0%
! ATCTAAAATGACTGGAAAAG+TGG + chr3_4:24236662-24236681 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG + chr3_4:24236730-24236749 None:intergenic 30.0%
TCGTATTCTTCCTATATTCT+AGG - chr3_4:24236855-24236874 Msa0495270:intron 30.0%
AATAAGATTAGGTAGGTTAC+TGG + chr3_4:24236925-24236944 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG + chr3_4:24236976-24236995 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG + chr3_4:24237068-24237087 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG + chr3_4:24237069-24237088 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG - chr3_4:24237160-24237179 Msa0495270:intron 30.0%
AACTGCTTCAAATACAGTAT+CGG + chr3_4:24237204-24237223 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG - chr3_4:24237248-24237267 Msa0495270:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG - chr3_4:24237257-24237276 Msa0495270:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG - chr3_4:24237259-24237278 Msa0495270:CDS 30.0%
ATAGGATTCCATTCAACTCA+TGG - chr3_4:24236559-24236578 Msa0495270:CDS 35.0%
ATTCCATTCAACTCATGGTT+GGG - chr3_4:24236564-24236583 Msa0495270:CDS 35.0%
ATGGTTGGGAACTAATGATT+GGG - chr3_4:24236578-24236597 Msa0495270:CDS 35.0%
! GGGTCTGTCTATAAAGATTT+TGG - chr3_4:24236598-24236617 Msa0495270:CDS 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG - chr3_4:24237079-24237098 Msa0495270:intron 35.0%
!! TATCCCATTTTTGCTCAACA+GGG - chr3_4:24237080-24237099 Msa0495270:intron 35.0%
TAACCCTGTTGAGCAAAAAT+GGG + chr3_4:24237086-24237105 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG + chr3_4:24237087-24237106 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG + chr3_4:24237154-24237173 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG + chr3_4:24237203-24237222 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG - chr3_4:24237272-24237291 Msa0495270:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG - chr3_4:24237295-24237314 Msa0495270:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG - chr3_4:24237296-24237315 Msa0495270:CDS 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG - chr3_4:24237307-24237326 Msa0495270:CDS 35.0%
!!! CAAACATTTTGAAACCCAAG+AGG + chr3_4:24237338-24237357 None:intergenic 35.0%
ATAGGATTCCATTCAACTCA+TGG - chr3_4:24236559-24236578 Msa0495270:CDS 35.0%
ATTCCATTCAACTCATGGTT+GGG - chr3_4:24236564-24236583 Msa0495270:CDS 35.0%
ATGGTTGGGAACTAATGATT+GGG - chr3_4:24236578-24236597 Msa0495270:CDS 35.0%
! GGGTCTGTCTATAAAGATTT+TGG - chr3_4:24236598-24236617 Msa0495270:CDS 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG - chr3_4:24237079-24237098 Msa0495270:intron 35.0%
!! TATCCCATTTTTGCTCAACA+GGG - chr3_4:24237080-24237099 Msa0495270:intron 35.0%
TAACCCTGTTGAGCAAAAAT+GGG + chr3_4:24237086-24237105 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG + chr3_4:24237087-24237106 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG + chr3_4:24237154-24237173 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG + chr3_4:24237203-24237222 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG - chr3_4:24237272-24237291 Msa0495270:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG - chr3_4:24237295-24237314 Msa0495270:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG - chr3_4:24237296-24237315 Msa0495270:CDS 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG - chr3_4:24237307-24237326 Msa0495270:CDS 35.0%
!!! CAAACATTTTGAAACCCAAG+AGG + chr3_4:24237338-24237357 None:intergenic 35.0%
GGTTGTTCGTCTCTATCAAT+TGG + chr3_4:24236357-24236376 None:intergenic 40.0%
AAATCGTATGGATACGGTCT+TGG + chr3_4:24236378-24236397 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG - chr3_4:24236563-24236582 Msa0495270:CDS 40.0%
CATGGTTGGGAACTAATGAT+TGG - chr3_4:24236577-24236596 Msa0495270:CDS 40.0%
TGAGCAATACGGAAATGGAT+CGG + chr3_4:24237022-24237041 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG + chr3_4:24237027-24237046 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG + chr3_4:24237170-24237189 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG - chr3_4:24237172-24237191 Msa0495270:intron 40.0%
!!! ATTTTGAAACCCAAGAGGAG+GGG + chr3_4:24237333-24237352 None:intergenic 40.0%
!!! CATTTTGAAACCCAAGAGGA+GGG + chr3_4:24237334-24237353 None:intergenic 40.0%
!!! ACATTTTGAAACCCAAGAGG+AGG + chr3_4:24237335-24237354 None:intergenic 40.0%
GGTTGTTCGTCTCTATCAAT+TGG + chr3_4:24236357-24236376 None:intergenic 40.0%
AAATCGTATGGATACGGTCT+TGG + chr3_4:24236378-24236397 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG - chr3_4:24236563-24236582 Msa0495270:CDS 40.0%
CATGGTTGGGAACTAATGAT+TGG - chr3_4:24236577-24236596 Msa0495270:CDS 40.0%
TGAGCAATACGGAAATGGAT+CGG + chr3_4:24237022-24237041 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG + chr3_4:24237027-24237046 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG + chr3_4:24237170-24237189 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG - chr3_4:24237172-24237191 Msa0495270:intron 40.0%
!!! ATTTTGAAACCCAAGAGGAG+GGG + chr3_4:24237333-24237352 None:intergenic 40.0%
!!! CATTTTGAAACCCAAGAGGA+GGG + chr3_4:24237334-24237353 None:intergenic 40.0%
!!! ACATTTTGAAACCCAAGAGG+AGG + chr3_4:24237335-24237354 None:intergenic 40.0%
! GTTCCCAACCATGAGTTGAA+TGG + chr3_4:24236570-24236589 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG + chr3_4:24237021-24237040 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG - chr3_4:24237107-24237126 Msa0495270:intron 45.0%
AAAATCCGAGAGAAGCTACC+GGG - chr3_4:24237108-24237127 Msa0495270:intron 45.0%
ATTAGCACATACAATCCGCC+CGG + chr3_4:24237129-24237148 None:intergenic 45.0%
! GTTCCCAACCATGAGTTGAA+TGG + chr3_4:24236570-24236589 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG + chr3_4:24237021-24237040 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG - chr3_4:24237107-24237126 Msa0495270:intron 45.0%
AAAATCCGAGAGAAGCTACC+GGG - chr3_4:24237108-24237127 Msa0495270:intron 45.0%
ATTAGCACATACAATCCGCC+CGG + chr3_4:24237129-24237148 None:intergenic 45.0%
!!! AAAAAAACAAATTTTATAAT+TGG + chr3_4:24236785-24236804 None:intergenic 5.0%
!!! AAAAAAACAAATTTTATAAT+TGG + chr3_4:24236785-24236804 None:intergenic 5.0%
TTTGAATTGGCCCCTCCTCT+TGG - chr3_4:24237320-24237339 Msa0495270:CDS 50.0%
TTGAATTGGCCCCTCCTCTT+GGG - chr3_4:24237321-24237340 Msa0495270:CDS 50.0%
TTTGAATTGGCCCCTCCTCT+TGG - chr3_4:24237320-24237339 Msa0495270:CDS 50.0%
TTGAATTGGCCCCTCCTCTT+GGG - chr3_4:24237321-24237340 Msa0495270:CDS 50.0%
!! GTATCGGGAAGTACCGCTTG+TGG + chr3_4:24237188-24237207 None:intergenic 55.0%
GGGGCCAATTCAAAACCCTC+TGG + chr3_4:24237314-24237333 None:intergenic 55.0%
!! GTATCGGGAAGTACCGCTTG+TGG + chr3_4:24237188-24237207 None:intergenic 55.0%
GGGGCCAATTCAAAACCCTC+TGG + chr3_4:24237314-24237333 None:intergenic 55.0%
ATCCGAGAGAAGCTACCGGG+CGG - chr3_4:24237111-24237130 Msa0495270:intron 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG + chr3_4:24237116-24237135 None:intergenic 60.0%
ATCCGAGAGAAGCTACCGGG+CGG - chr3_4:24237111-24237130 Msa0495270:intron 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG + chr3_4:24237116-24237135 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 24236331 24237358 24236331 ID=Msa0495270;Name=Msa0495270
chr3_4 mRNA 24236331 24237358 24236331 ID=Msa0495270-mRNA-1;Parent=Msa0495270;Name=Msa0495270-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0|0|1|0|0|2|0|196
chr3_4 exon 24237178 24237358 24237178 ID=Msa0495270-mRNA-1:exon:5910;Parent=Msa0495270-mRNA-1
chr3_4 exon 24236331 24236740 24236331 ID=Msa0495270-mRNA-1:exon:5909;Parent=Msa0495270-mRNA-1
chr3_4 CDS 24237178 24237358 24237178 ID=Msa0495270-mRNA-1:cds;Parent=Msa0495270-mRNA-1
chr3_4 CDS 24236331 24236740 24236331 ID=Msa0495270-mRNA-1:cds;Parent=Msa0495270-mRNA-1
Gene Sequence

>Msa0495270

ATGGAAATCTACAAAGAAAGCATCCAATTGATAGAGACGAACAACCAAGACCGTATCCATACGATTTTGCATTTCTGTACAAATATAATATGTTTCCTTATTCTAAGTGGTTATTCTATTAGGGGTAATCAAGAACTCATTATTCTTAACTCTTGGGTTCAAGAATTTCTATATAACTTAAAAATTTTCAGGATGAATGATTGGACCATGCAAACTAGAAATGCTTTTTCTTGGATAAAGGAAGAGATTACCCGATCCATTTCCGTATTGCTCATGATCTATATAATAACTCGAGCACCCATTTCAAATGCATATCCCATTTTTGCTCAACAGGGTTATGAAAATCCGAGAGAAGCTACCGGGCGGATTGTATGTGCTAATTGCCATTTAGCTAATAAGCCTGTAGATATTGAGGTTCCACAAGCGGTACTTCCCGATACTGTATTTGAAGCAGTTGTTCGAATTCCTTATGATATGCAAGTTAAACAAGTTCTTGCTAATGGTAAAAAAGGGGCTTTGAATGTAGGTGCTGTTCTTATTTTACCAGAGGGTTTTGAATTGGCCCCTCCTCTTGGGTTTCAAAATGTTTGA

Protein sequence

>Msa0495270

MEIYKESIQLIETNNQDRIHTILHFCTNIICFLILSGYSIRGNQELIILNSWVQEFLYNLKIFRMNDWTMQTRNAFSWIKEEITRSISVLLMIYIITRAPISNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQVKQVLANGKKGALNVGAVLILPEGFELAPPLGFQNV*