AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0033930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033930 MtrunA17_Chr1g0194531 81.949 277 26 5 1 270 1 260 3.11e-156 435
Msa0033930 MtrunA17_Chr7g0260531 29.469 207 125 5 49 249 46 237 6.64e-18 80.9
Msa0033930 MtrunA17_Chr1g0184911 30.622 209 112 8 53 249 61 248 1.95e-16 77.0
Msa0033930 MtrunA17_Chr3g0119841 27.419 248 125 9 49 269 44 263 4.04e-16 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033930 AT4G01995.1 54.286 245 84 5 22 259 29 252 3.42e-76 232
Msa0033930 AT4G01995.3 57.727 220 73 4 47 259 15 221 9.57e-76 230
Msa0033930 AT4G01995.2 53.448 174 62 2 22 195 29 183 3.44e-50 164
Msa0033930 AT1G64680.1 30.093 216 112 9 50 246 36 231 3.02e-19 84.7
Msa0033930 AT1G03055.1 27.755 245 144 8 14 249 34 254 1.06e-17 80.9

Find 102 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCAGTCACACCTGTGTTTC+TGG 0.163795 1_1:+61812398 None:intergenic
ATTCCAACGCTTTGTTCTAA+TGG 0.234706 1_1:-61814794 Msa0033930:CDS
GCAGAAGATGCAAACCGTTT+TGG 0.270080 1_1:+61814712 None:intergenic
CAATTTGTTTCGCACCAAAT+TGG 0.279978 1_1:-61814570 Msa0033930:CDS
TTTGTTTCCTCCATTCCTTT+TGG 0.289746 1_1:-61813425 Msa0033930:CDS
GAAAATTACCGTAGCTTCTA+TGG 0.292895 1_1:+61814336 None:intergenic
TTAGGTTACCTGAACCAATT+TGG 0.303056 1_1:+61814556 None:intergenic
TTGCTAAGGGGAGCGCTTAC+CGG 0.307796 1_1:+61814920 None:intergenic
TTCAGGACGGTGTCATCTTC+AGG 0.308272 1_1:+61812471 None:intergenic
TAGCACTTATGTCTTGTTAC+AGG 0.309687 1_1:-61813464 Msa0033930:CDS
GACCTTCTTCAAGGATCATA+TGG 0.328100 1_1:-61812658 Msa0033930:CDS
TTAAATTTGCAGTTCAAATT+CGG 0.342169 1_1:-61812510 Msa0033930:intron
GTCTACAGAATTGACTTTGC+AGG 0.348660 1_1:+61813184 None:intergenic
GTTTCGCACCAAATTGGTTC+AGG 0.358197 1_1:-61814564 Msa0033930:intron
TCTTCTTCTTCATCTTCATC+AGG 0.361445 1_1:-61814737 Msa0033930:CDS
GAACTGAAGGCTTGGGTAAT+GGG 0.361682 1_1:-61812267 Msa0033930:three_prime_UTR
TTAGAACAAAGCGTTGGAAT+TGG 0.365725 1_1:+61814797 None:intergenic
TGTCGAAAGATGCAAGTATC+TGG 0.367315 1_1:-61813032 Msa0033930:CDS
AAATGCTTCCCTACGAAGAT+TGG 0.373694 1_1:-61812424 Msa0033930:CDS
CTTCCAAGCAAGGCTCCTTC+AGG 0.383691 1_1:+61812454 None:intergenic
TAAATATATTGTTAATTCGT+TGG 0.393843 1_1:-61812176 Msa0033930:three_prime_UTR
CTCCAACTTGTCTTTGAAGA+TGG 0.414710 1_1:-61812289 Msa0033930:three_prime_UTR
TTAAATTTAGACCTTCTTCA+AGG 0.416665 1_1:-61812667 Msa0033930:intron
GCAACTTTGCCTCCACCTAT+AGG 0.420034 1_1:+61813379 None:intergenic
ACAGCTATAATCAGCAAAGT+TGG 0.429629 1_1:+61812614 None:intergenic
TCAAAGAGTGAATACAAGCC+TGG 0.439154 1_1:-61814614 Msa0033930:CDS
AGGCAAAGTTGCCGCTATAA+TGG 0.445748 1_1:-61813368 Msa0033930:CDS
GGAACTGAAGGCTTGGGTAA+TGG 0.446568 1_1:-61812268 Msa0033930:three_prime_UTR
GAAGATGGAACTGAAGGCTT+GGG 0.449488 1_1:-61812274 Msa0033930:three_prime_UTR
AATCTTCGTAGGGAAGCATT+TGG 0.450960 1_1:+61812426 None:intergenic
AACAATATATTTACAGAGAT+GGG 0.452375 1_1:+61812186 None:intergenic
CTTTGCTGATTATAGCTGTC+AGG 0.455452 1_1:-61812610 Msa0033930:intron
TTAACTCTCCGCGTTTGCTA+AGG 0.456999 1_1:+61814906 None:intergenic
CGTCCTGAAGGAGCCTTGCT+TGG 0.459856 1_1:-61812457 Msa0033930:CDS
TAACAATATATTTACAGAGA+TGG 0.468144 1_1:+61812185 None:intergenic
TTAGTTAAGTTGTTACAGTT+AGG 0.472150 1_1:-61814858 Msa0033930:five_prime_UTR
TAACTCTCCGCGTTTGCTAA+GGG 0.476469 1_1:+61814907 None:intergenic
TCAATTAGTCCGTCATATCC+AGG 0.477685 1_1:+61814403 None:intergenic
AAAATGCTCATAGCTCCTAT+AGG 0.484909 1_1:-61813394 Msa0033930:CDS
GATGGAACCTCATGGAATAG+TGG 0.485415 1_1:-61813155 Msa0033930:CDS
TGGTTAGAAACCAATTAAAC+CGG 0.486125 1_1:-61814939 None:intergenic
GTCTTTGAAGATGGAACTGA+AGG 0.487373 1_1:-61812280 Msa0033930:three_prime_UTR
TTACTGCACTTACTTGTCAA+TGG 0.489234 1_1:-61813217 Msa0033930:CDS
ACCTTCTTCAAGGATCATAT+GGG 0.499420 1_1:-61812657 Msa0033930:CDS
TTCCATCTTCAAAGACAAGT+TGG 0.500129 1_1:+61812287 None:intergenic
TGAAGATGGAACTGAAGGCT+TGG 0.500254 1_1:-61812275 Msa0033930:three_prime_UTR
CAGCTATAATCAGCAAAGTT+GGG 0.500940 1_1:+61812615 None:intergenic
CGGTGTCATCTTCAGGAAGT+GGG 0.502536 1_1:+61812478 None:intergenic
TACCGTAGCTTCTATGGTAT+CGG 0.506593 1_1:+61814342 None:intergenic
ATCTTCATCAGGACCCAAAA+CGG 0.508312 1_1:-61814726 Msa0033930:intron
ATGGAACCTCATGGAATAGT+GGG 0.508469 1_1:-61813154 Msa0033930:CDS
GGATGGGACTCGAAGAAACC+TGG 0.509195 1_1:-61814421 Msa0033930:CDS
CAAAGAGTGAATACAAGCCT+GGG 0.509583 1_1:-61814613 Msa0033930:CDS
ACGGTGTCATCTTCAGGAAG+TGG 0.512090 1_1:+61812477 None:intergenic
TTTGGACATGCTTCCAAGCA+AGG 0.516931 1_1:+61812444 None:intergenic
AAGGCGCTAAGTATTGTTGT+TGG 0.517773 1_1:-61814827 Msa0033930:CDS
ATATGTTCATGTCTTTGGGC+AGG 0.520060 1_1:+61812377 None:intergenic
ACTTACTTGTCAATGGCTCA+TGG 0.525178 1_1:-61813210 Msa0033930:CDS
TTGGAGCTAGAATGTGCAAA+AGG 0.526094 1_1:+61812306 None:intergenic
TCTACAGAATTGACTTTGCA+GGG 0.526670 1_1:+61813185 None:intergenic
GCGCTAAGTATTGTTGTTGG+CGG 0.530949 1_1:-61814824 Msa0033930:CDS
CTTACTTGTCAATGGCTCAT+GGG 0.539633 1_1:-61813209 Msa0033930:CDS
CTCCGATACCATAGAAGCTA+CGG 0.540098 1_1:-61814344 Msa0033930:intron
TATGGGAGTTCCATTACTCA+TGG 0.540166 1_1:-61812640 Msa0033930:CDS
CTAGAATGTGCAAAAGGCTG+TGG 0.546342 1_1:+61812312 None:intergenic
TACTATAACAGGAAGTGGGA+TGG 0.548952 1_1:-61814438 Msa0033930:intron
TTATAGAGCTCCAAAAGGAA+TGG 0.549533 1_1:+61813415 None:intergenic
ATTTGGTGCGAAACAAATTG+AGG 0.552877 1_1:+61814573 None:intergenic
TTACAGTTAGGAAGAAATGA+AGG 0.558079 1_1:-61814846 Msa0033930:exon
TCCCATATGATCCTTGAAGA+AGG 0.562632 1_1:+61812656 None:intergenic
AACTCTCCGCGTTTGCTAAG+GGG 0.565270 1_1:+61814908 None:intergenic
CTCATAGCTCCTATAGGTGG+AGG 0.565279 1_1:-61813388 Msa0033930:CDS
TAGTGCCTTTCATCATTAGA+CGG 0.569097 1_1:+61814371 None:intergenic
ATTCCATTAGAACAAAGCGT+TGG 0.570606 1_1:+61814791 None:intergenic
AAAATACTATAACAGGAAGT+GGG 0.571265 1_1:-61814442 Msa0033930:intron
AAGTTGGGCTCCATGAGTAA+TGG 0.572536 1_1:+61812630 None:intergenic
TCGAAGAAACCTGGATATGA+CGG 0.573061 1_1:-61814412 Msa0033930:CDS
ACTATAACAGGAAGTGGGAT+GGG 0.573427 1_1:-61814437 Msa0033930:intron
TGAAGATGACACCGTCCTGA+AGG 0.575565 1_1:-61812469 Msa0033930:CDS
TCTGGAAGCCAATCTTCGTA+GGG 0.579827 1_1:+61812416 None:intergenic
ACCTATCAGATGGAACCTCA+TGG 0.586052 1_1:-61813163 Msa0033930:CDS
AACAAATCATCAATAACCCC+AGG 0.586570 1_1:+61814596 None:intergenic
AGTCATAAACACACAGCGAA+AGG 0.587535 1_1:+61813118 None:intergenic
TCCATGAGGTTCCATCTGAT+AGG 0.590896 1_1:+61813162 None:intergenic
TTCTGGAAGCCAATCTTCGT+AGG 0.598210 1_1:+61812415 None:intergenic
AAAGTTGCCGCTATAATGGT+TGG 0.601706 1_1:-61813364 Msa0033930:intron
AATTCTGTAGACCTATCAGA+TGG 0.614406 1_1:-61813173 Msa0033930:CDS
TAGAGCTCCAAAAGGAATGG+AGG 0.615600 1_1:+61813418 None:intergenic
TCAAAGATGAATTATCGTTG+TGG 0.625539 1_1:+61812240 None:intergenic
GCTAACCGTCTAATGATGAA+AGG 0.626704 1_1:-61814376 Msa0033930:CDS
ATGCTCATAGCTCCTATAGG+TGG 0.633669 1_1:-61813391 Msa0033930:CDS
AGCGCTCCCCTTAGCAAACG+CGG 0.634335 1_1:-61814914 Msa0033930:five_prime_UTR
CGAAAGATGCAAGTATCTGG+AGG 0.640761 1_1:-61813029 Msa0033930:CDS
GGTGTCATCTTCAGGAAGTG+GGG 0.642463 1_1:+61812479 None:intergenic
CAAGCAAGGCTCCTTCAGGA+CGG 0.652728 1_1:+61812458 None:intergenic
CGGAGAGTTAAAGTGAAGTG+TGG 0.653739 1_1:-61814894 Msa0033930:five_prime_UTR
GTGTCATCTTCAGGAAGTGG+GGG 0.656581 1_1:+61812480 None:intergenic
AGATTGGCTTCCAGAAACAC+AGG 0.677702 1_1:-61812408 Msa0033930:CDS
AGACTCACCAACCATTATAG+CGG 0.701172 1_1:+61813357 None:intergenic
TGGAACCTCATGGAATAGTG+GGG 0.705163 1_1:-61813153 Msa0033930:CDS
AAAGAGTGAATACAAGCCTG+GGG 0.716715 1_1:-61814612 Msa0033930:CDS
GATCACCCCACTATTCCATG+AGG 0.750720 1_1:+61813148 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACTTAAATAAATGTTTA+AGG + chr1_1:61813758-61813777 None:intergenic 10.0%
!! ATATATGAATATGATTAATG+TGG - chr1_1:61812524-61812543 Msa0033930:intron 15.0%
!! TAAATATATTGTTAATTCGT+TGG - chr1_1:61814829-61814848 Msa0033930:CDS 15.0%
!!! GTTTTGATTGAATTTGAATT+AGG - chr1_1:61812351-61812370 Msa0033930:three_prime_UTR 20.0%
!! TATAAATAAGTTAACTGGAA+GGG + chr1_1:61812479-61812498 None:intergenic 20.0%
!! AAAGCTATAAATAAGTTAAC+TGG + chr1_1:61812484-61812503 None:intergenic 20.0%
!!! TTTTAGAAAGAAAGAAAAGA+GGG - chr1_1:61812501-61812520 Msa0033930:CDS 20.0%
!! AGATTATCAAACTGTTTATA+AGG - chr1_1:61812878-61812897 Msa0033930:intron 20.0%
!! AAATCCTAAGATGATAAAAA+TGG - chr1_1:61813113-61813132 Msa0033930:intron 20.0%
!!! AGATAAGAATTTGATGTTTT+TGG - chr1_1:61813175-61813194 Msa0033930:CDS 20.0%
!!! GATAAGAATTTGATGTTTTT+GGG - chr1_1:61813176-61813195 Msa0033930:CDS 20.0%
!!! ATAAGAATTTGATGTTTTTG+GGG - chr1_1:61813177-61813196 Msa0033930:CDS 20.0%
!! GAATAAGTAACATTGTATTA+CGG + chr1_1:61813393-61813412 None:intergenic 20.0%
!!! TAATACAATGTTACTTATTC+TGG - chr1_1:61813393-61813412 Msa0033930:CDS 20.0%
!! AAGTTTAGAAGAATCATATA+AGG + chr1_1:61813491-61813510 None:intergenic 20.0%
!!! TTTATTTAAGTTTTGAAGCA+AGG - chr1_1:61813764-61813783 Msa0033930:intron 20.0%
!!! TTATTTAAGTTTTGAAGCAA+GGG - chr1_1:61813765-61813784 Msa0033930:intron 20.0%
!! TATGTACTATAAAATGTTGT+AGG - chr1_1:61813946-61813965 Msa0033930:intron 20.0%
!! AAATATTACGTATTCTCTTA+TGG - chr1_1:61814422-61814441 Msa0033930:CDS 20.0%
!! ATTTGAACTGCAAATTTAAA+AGG + chr1_1:61814494-61814513 None:intergenic 20.0%
!! TTAAATTTGCAGTTCAAATT+CGG - chr1_1:61814495-61814514 Msa0033930:intron 20.0%
!! AAAAATATGTTCATGTCTTT+GGG + chr1_1:61814635-61814654 None:intergenic 20.0%
!! AACAATATATTTACAGAGAT+GGG + chr1_1:61814822-61814841 None:intergenic 20.0%
!! TAACAATATATTTACAGAGA+TGG + chr1_1:61814823-61814842 None:intergenic 20.0%
!!! ATGTTTTCAATGAATTCATT+CGG + chr1_1:61814883-61814902 None:intergenic 20.0%
!! TTAGTTAAGTTGTTACAGTT+AGG - chr1_1:61812147-61812166 Msa0033930:three_prime_UTR 25.0%
! TTGATTGAATTTGAATTAGG+TGG - chr1_1:61812354-61812373 Msa0033930:three_prime_UTR 25.0%
! TGATTGAATTTGAATTAGGT+GGG - chr1_1:61812355-61812374 Msa0033930:three_prime_UTR 25.0%
! ATAAATAAGTTAACTGGAAG+GGG + chr1_1:61812478-61812497 None:intergenic 25.0%
! CTATAAATAAGTTAACTGGA+AGG + chr1_1:61812480-61812499 None:intergenic 25.0%
!!! CTTTTAGAAAGAAAGAAAAG+AGG - chr1_1:61812500-61812519 Msa0033930:CDS 25.0%
! TATGAATATGATTAATGTGG+TGG - chr1_1:61812527-61812546 Msa0033930:intron 25.0%
! ATGAATATGATTAATGTGGT+GGG - chr1_1:61812528-61812547 Msa0033930:intron 25.0%
! GAGTATGAAAATACTATAAC+AGG - chr1_1:61812556-61812575 Msa0033930:intron 25.0%
! AAAATACTATAACAGGAAGT+GGG - chr1_1:61812563-61812582 Msa0033930:intron 25.0%
!!! ATATAAACCTTTTGAAACCA+TGG + chr1_1:61812762-61812781 None:intergenic 25.0%
!! TAAATTTTGTGTGACTGTTT+AGG - chr1_1:61812840-61812859 Msa0033930:intron 25.0%
!!! GTTTCCATTTTTATCATCTT+AGG + chr1_1:61813120-61813139 None:intergenic 25.0%
! TAGTTATCTTTGCGAAAAAA+TGG - chr1_1:61813292-61813311 Msa0033930:intron 25.0%
! TGATTCTTCTAAACTTTGAA+TGG - chr1_1:61813495-61813514 Msa0033930:intron 25.0%
! TCATCTTGTATTATTGAAAG+TGG - chr1_1:61813921-61813940 Msa0033930:intron 25.0%
! TACTAACATGAAAAAACCAA+GGG + chr1_1:61814249-61814268 None:intergenic 25.0%
! ATACTAACATGAAAAAACCA+AGG + chr1_1:61814250-61814269 None:intergenic 25.0%
!!! TTTGAAGTTGTTGCATTTTA+TGG - chr1_1:61814294-61814313 Msa0033930:intron 25.0%
! TTAAATTTAGACCTTCTTCA+AGG - chr1_1:61814338-61814357 Msa0033930:intron 25.0%
! GAGTTCAAATTTATATGATG+AGG - chr1_1:61814444-61814463 Msa0033930:intron 25.0%
! GAAAAATATGTTCATGTCTT+TGG + chr1_1:61814636-61814655 None:intergenic 25.0%
!! AGACATGAACATATTTTTCT+TGG - chr1_1:61814637-61814656 Msa0033930:intron 25.0%
!! GACATGAACATATTTTTCTT+GGG - chr1_1:61814638-61814657 Msa0033930:intron 25.0%
!! TGTTTTCAATGAATTCATTC+GGG + chr1_1:61814882-61814901 None:intergenic 25.0%
!!! TTTTTGAGTTAAGATATCGA+AGG - chr1_1:61814912-61814931 Msa0033930:five_prime_UTR 25.0%
TTACAGTTAGGAAGAAATGA+AGG - chr1_1:61812159-61812178 Msa0033930:three_prime_UTR 30.0%
GAAAATACTATAACAGGAAG+TGG - chr1_1:61812562-61812581 Msa0033930:intron 30.0%
AGCTTTACTTTCTCTTTCTA+AGG + chr1_1:61813069-61813088 None:intergenic 30.0%
! GAAAGAGAAAGTAAAGCTTT+TGG - chr1_1:61813071-61813090 Msa0033930:intron 30.0%
!! TGAAGTGGATTGGAATAAAA+CGG + chr1_1:61813341-61813360 None:intergenic 30.0%
TCAGTTAAAGACAAATCGTT+TGG + chr1_1:61814201-61814220 None:intergenic 30.0%
! AAGTTGTTGCATTTTATGGA+TGG - chr1_1:61814298-61814317 Msa0033930:intron 30.0%
TCAAAGATGAATTATCGTTG+TGG + chr1_1:61814768-61814787 None:intergenic 30.0%
! GTTTTCAATGAATTCATTCG+GGG + chr1_1:61814881-61814900 None:intergenic 30.0%
!! TTAGAACAAAGCGTTGGAAT+TGG + chr1_1:61812211-61812230 None:intergenic 35.0%
! ATTCCAACGCTTTGTTCTAA+TGG - chr1_1:61812211-61812230 Msa0033930:three_prime_UTR 35.0%
ATTCCATTAGAACAAAGCGT+TGG + chr1_1:61812217-61812236 None:intergenic 35.0%
TCTTCTTCTTCATCTTCATC+AGG - chr1_1:61812268-61812287 Msa0033930:three_prime_UTR 35.0%
AACAAATCATCAATAACCCC+AGG + chr1_1:61812412-61812431 None:intergenic 35.0%
!! ATTTGGTGCGAAACAAATTG+AGG + chr1_1:61812435-61812454 None:intergenic 35.0%
! CAATTTGTTTCGCACCAAAT+TGG - chr1_1:61812435-61812454 Msa0033930:CDS 35.0%
TTAGGTTACCTGAACCAATT+TGG + chr1_1:61812452-61812471 None:intergenic 35.0%
! AATATGATTAATGTGGTGGG+TGG - chr1_1:61812531-61812550 Msa0033930:intron 35.0%
TAGTGCCTTTCATCATTAGA+CGG + chr1_1:61812637-61812656 None:intergenic 35.0%
GAAAATTACCGTAGCTTCTA+TGG + chr1_1:61812672-61812691 None:intergenic 35.0%
TTCCTTACAAACCAAAACCA+TGG - chr1_1:61812742-61812761 Msa0033930:intron 35.0%
!!! AACCATGGTTTTGGTTTGTA+AGG + chr1_1:61812747-61812766 None:intergenic 35.0%
ACCAAAACCATGGTTTCAAA+AGG - chr1_1:61812752-61812771 Msa0033930:intron 35.0%
!!! ACCTTTTGAAACCATGGTTT+TGG + chr1_1:61812756-61812775 None:intergenic 35.0%
!! AGCTGTTTTCATAAGCTATC+TGG + chr1_1:61812931-61812950 None:intergenic 35.0%
TCATAATAAGCACTTGTGAG+CGG - chr1_1:61813022-61813041 Msa0033930:CDS 35.0%
!!! GAATTTGATGTTTTTGGGGA+TGG - chr1_1:61813181-61813200 Msa0033930:CDS 35.0%
AACTCTCAAAACCAAAATGG+TGG + chr1_1:61813220-61813239 None:intergenic 35.0%
CCAAACTCTCAAAACCAAAA+TGG + chr1_1:61813223-61813242 None:intergenic 35.0%
!!! CCATTTTGGTTTTGAGAGTT+TGG - chr1_1:61813220-61813239 Msa0033930:CDS 35.0%
TTGAGAGTTTGGTATAGATC+AGG - chr1_1:61813231-61813250 Msa0033930:intron 35.0%
TGGTATAGATCAGGTATGTT+TGG - chr1_1:61813240-61813259 Msa0033930:intron 35.0%
GGTATAGATCAGGTATGTTT+GGG - chr1_1:61813241-61813260 Msa0033930:intron 35.0%
TAGAGTTGAATGAAGTGGAT+TGG + chr1_1:61813351-61813370 None:intergenic 35.0%
TGGTATAGAGTTGAATGAAG+TGG + chr1_1:61813356-61813375 None:intergenic 35.0%
ACATTGTATTACGGTATGTC+TGG + chr1_1:61813384-61813403 None:intergenic 35.0%
! TAGCACTTATGTCTTGTTAC+AGG - chr1_1:61813541-61813560 Msa0033930:intron 35.0%
! TGTTACAGGTACGAATTTTG+AGG - chr1_1:61813555-61813574 Msa0033930:intron 35.0%
! TTTGTTTCCTCCATTCCTTT+TGG - chr1_1:61813580-61813599 Msa0033930:intron 35.0%
TTATAGAGCTCCAAAAGGAA+TGG + chr1_1:61813593-61813612 None:intergenic 35.0%
! GCATTTTATAGAGCTCCAAA+AGG + chr1_1:61813598-61813617 None:intergenic 35.0%
AAAATGCTCATAGCTCCTAT+AGG - chr1_1:61813611-61813630 Msa0033930:intron 35.0%
!! TCACTAGCTTGTTATGTTCA+GGG + chr1_1:61813717-61813736 None:intergenic 35.0%
TTACTGCACTTACTTGTCAA+TGG - chr1_1:61813788-61813807 Msa0033930:intron 35.0%
! TCTACAGAATTGACTTTGCA+GGG + chr1_1:61813823-61813842 None:intergenic 35.0%
AATTCTGTAGACCTATCAGA+TGG - chr1_1:61813832-61813851 Msa0033930:intron 35.0%
TTTCAGTCAGGATTTGAACT+CGG - chr1_1:61814169-61814188 Msa0033930:intron 35.0%
ACATGAAAAAACCAAGGGAT+CGG + chr1_1:61814244-61814263 None:intergenic 35.0%
AAATGCAACAACTTCAAAGC+TGG + chr1_1:61814292-61814311 None:intergenic 35.0%
ACCTTCTTCAAGGATCATAT+GGG - chr1_1:61814348-61814367 Msa0033930:CDS 35.0%
CAGCTATAATCAGCAAAGTT+GGG + chr1_1:61814393-61814412 None:intergenic 35.0%
ACAGCTATAATCAGCAAAGT+TGG + chr1_1:61814394-61814413 None:intergenic 35.0%
TTCCATCTTCAAAGACAAGT+TGG + chr1_1:61814721-61814740 None:intergenic 35.0%
! AAGGCGCTAAGTATTGTTGT+TGG - chr1_1:61812178-61812197 Msa0033930:three_prime_UTR 40.0%
ATCTTCATCAGGACCCAAAA+CGG - chr1_1:61812279-61812298 Msa0033930:three_prime_UTR 40.0%
! CAGAAGATGCAAACCGTTTT+GGG + chr1_1:61812295-61812314 None:intergenic 40.0%
TCAAAGAGTGAATACAAGCC+TGG - chr1_1:61812391-61812410 Msa0033930:CDS 40.0%
CAAAGAGTGAATACAAGCCT+GGG - chr1_1:61812392-61812411 Msa0033930:CDS 40.0%
AAAGAGTGAATACAAGCCTG+GGG - chr1_1:61812393-61812412 Msa0033930:CDS 40.0%
TACTATAACAGGAAGTGGGA+TGG - chr1_1:61812567-61812586 Msa0033930:intron 40.0%
ACTATAACAGGAAGTGGGAT+GGG - chr1_1:61812568-61812587 Msa0033930:intron 40.0%
TCGAAGAAACCTGGATATGA+CGG - chr1_1:61812593-61812612 Msa0033930:intron 40.0%
TCAATTAGTCCGTCATATCC+AGG + chr1_1:61812605-61812624 None:intergenic 40.0%
GCTAACCGTCTAATGATGAA+AGG - chr1_1:61812629-61812648 Msa0033930:CDS 40.0%
TACCGTAGCTTCTATGGTAT+CGG + chr1_1:61812666-61812685 None:intergenic 40.0%
GGTGTATGTGTATCCAAACA+GGG - chr1_1:61813043-61813062 Msa0033930:intron 40.0%
!!! TTGATGTTTTTGGGGATGGA+TGG - chr1_1:61813185-61813204 Msa0033930:CDS 40.0%
TAGATCAGGTATGTTTGGGT+TGG - chr1_1:61813245-61813264 Msa0033930:intron 40.0%
! TTACGGTATGTCTGGAATTG+TGG + chr1_1:61813376-61813395 None:intergenic 40.0%
! AAGTGCTAACAAACTTGCTC+TGG + chr1_1:61813529-61813548 None:intergenic 40.0%
AAAGTTGCCGCTATAATGGT+TGG - chr1_1:61813641-61813660 Msa0033930:intron 40.0%
AGACTCACCAACCATTATAG+CGG + chr1_1:61813651-61813670 None:intergenic 40.0%
!! CACTAGCTTGTTATGTTCAG+GGG + chr1_1:61813716-61813735 None:intergenic 40.0%
!! CTCACTAGCTTGTTATGTTC+AGG + chr1_1:61813718-61813737 None:intergenic 40.0%
ACTTACTTGTCAATGGCTCA+TGG - chr1_1:61813795-61813814 Msa0033930:intron 40.0%
CTTACTTGTCAATGGCTCAT+GGG - chr1_1:61813796-61813815 Msa0033930:intron 40.0%
! GTCTACAGAATTGACTTTGC+AGG + chr1_1:61813824-61813843 None:intergenic 40.0%
ATGGAACCTCATGGAATAGT+GGG - chr1_1:61813851-61813870 Msa0033930:intron 40.0%
AGTCATAAACACACAGCGAA+AGG + chr1_1:61813890-61813909 None:intergenic 40.0%
TGTCGAAAGATGCAAGTATC+TGG - chr1_1:61813973-61813992 Msa0033930:intron 40.0%
AACCTGTGTTGGAAACTTAC+AGG + chr1_1:61814032-61814051 None:intergenic 40.0%
GAAGAATCACTAACCTGTGT+TGG + chr1_1:61814043-61814062 None:intergenic 40.0%
! GATATCTAGAGTTTGACCGA+GGG - chr1_1:61814122-61814141 Msa0033930:intron 40.0%
GACCGAGGGTAACAAAATTA+TGG - chr1_1:61814136-61814155 Msa0033930:intron 40.0%
! GGCCATAATTTTGTTACCCT+CGG + chr1_1:61814141-61814160 None:intergenic 40.0%
ATCCTGACTGAAACAATCAC+TGG + chr1_1:61814162-61814181 None:intergenic 40.0%
GACCTTCTTCAAGGATCATA+TGG - chr1_1:61814347-61814366 Msa0033930:CDS 40.0%
TCCCATATGATCCTTGAAGA+AGG + chr1_1:61814352-61814371 None:intergenic 40.0%
TATGGGAGTTCCATTACTCA+TGG - chr1_1:61814365-61814384 Msa0033930:CDS 40.0%
! CTTTGCTGATTATAGCTGTC+AGG - chr1_1:61814395-61814414 Msa0033930:CDS 40.0%
!! AATCTTCGTAGGGAAGCATT+TGG + chr1_1:61814582-61814601 None:intergenic 40.0%
AAATGCTTCCCTACGAAGAT+TGG - chr1_1:61814581-61814600 Msa0033930:CDS 40.0%
ATATGTTCATGTCTTTGGGC+AGG + chr1_1:61814631-61814650 None:intergenic 40.0%
TTGGAGCTAGAATGTGCAAA+AGG + chr1_1:61814702-61814721 None:intergenic 40.0%
! CTCCAACTTGTCTTTGAAGA+TGG - chr1_1:61814716-61814735 Msa0033930:intron 40.0%
! GTCTTTGAAGATGGAACTGA+AGG - chr1_1:61814725-61814744 Msa0033930:intron 40.0%
! TAACTCTCCGCGTTTGCTAA+GGG + chr1_1:61812101-61812120 None:intergenic 45.0%
! TTAACTCTCCGCGTTTGCTA+AGG + chr1_1:61812102-61812121 None:intergenic 45.0%
CGGAGAGTTAAAGTGAAGTG+TGG - chr1_1:61812111-61812130 Msa0033930:three_prime_UTR 45.0%
! GCGCTAAGTATTGTTGTTGG+CGG - chr1_1:61812181-61812200 Msa0033930:three_prime_UTR 45.0%
! GCAGAAGATGCAAACCGTTT+TGG + chr1_1:61812296-61812315 None:intergenic 45.0%
! GTTTCGCACCAAATTGGTTC+AGG - chr1_1:61812441-61812460 Msa0033930:CDS 45.0%
CTCCGATACCATAGAAGCTA+CGG - chr1_1:61812661-61812680 Msa0033930:intron 45.0%
CGGTGTATGTGTATCCAAAC+AGG - chr1_1:61813042-61813061 Msa0033930:intron 45.0%
!! TCTCTTTCTAAGGCCCTGTT+TGG + chr1_1:61813059-61813078 None:intergenic 45.0%
! GGCAAAGATCTCCACCATTT+TGG - chr1_1:61813206-61813225 Msa0033930:CDS 45.0%
!! ATCAGGTATGTTTGGGTTGG+TGG - chr1_1:61813248-61813267 Msa0033930:intron 45.0%
TAGAGCTCCAAAAGGAATGG+AGG + chr1_1:61813590-61813609 None:intergenic 45.0%
ATGCTCATAGCTCCTATAGG+TGG - chr1_1:61813614-61813633 Msa0033930:intron 45.0%
AGGCAAAGTTGCCGCTATAA+TGG - chr1_1:61813637-61813656 Msa0033930:intron 45.0%
ACCTATCAGATGGAACCTCA+TGG - chr1_1:61813842-61813861 Msa0033930:intron 45.0%
TCCATGAGGTTCCATCTGAT+AGG + chr1_1:61813846-61813865 None:intergenic 45.0%
GATGGAACCTCATGGAATAG+TGG - chr1_1:61813850-61813869 Msa0033930:intron 45.0%
TGGAACCTCATGGAATAGTG+GGG - chr1_1:61813852-61813871 Msa0033930:intron 45.0%
CGAAAGATGCAAGTATCTGG+AGG - chr1_1:61813976-61813995 Msa0033930:intron 45.0%
CACCTGTAAGTTTCCAACAC+AGG - chr1_1:61814027-61814046 Msa0033930:intron 45.0%
ATATCCCTTCCCATGAGAAC+TGG + chr1_1:61814107-61814126 None:intergenic 45.0%
! GGATATCTAGAGTTTGACCG+AGG - chr1_1:61814121-61814140 Msa0033930:intron 45.0%
AACATTTGAGTCCGATCCCT+TGG - chr1_1:61814230-61814249 Msa0033930:intron 45.0%
AAGTTGGGCTCCATGAGTAA+TGG + chr1_1:61814378-61814397 None:intergenic 45.0%
TTTGGACATGCTTCCAAGCA+AGG + chr1_1:61814564-61814583 None:intergenic 45.0%
TCTGGAAGCCAATCTTCGTA+GGG + chr1_1:61814592-61814611 None:intergenic 45.0%
! TTCTGGAAGCCAATCTTCGT+AGG + chr1_1:61814593-61814612 None:intergenic 45.0%
!! AGATTGGCTTCCAGAAACAC+AGG - chr1_1:61814597-61814616 Msa0033930:CDS 45.0%
CTAGAATGTGCAAAAGGCTG+TGG + chr1_1:61814696-61814715 None:intergenic 45.0%
TGAAGATGGAACTGAAGGCT+TGG - chr1_1:61814730-61814749 Msa0033930:CDS 45.0%
GAAGATGGAACTGAAGGCTT+GGG - chr1_1:61814731-61814750 Msa0033930:CDS 45.0%
GAACTGAAGGCTTGGGTAAT+GGG - chr1_1:61814738-61814757 Msa0033930:CDS 45.0%
! AACTCTCCGCGTTTGCTAAG+GGG + chr1_1:61812100-61812119 None:intergenic 50.0%
GTTAACTGGAAGGGGCTGTT+AGG + chr1_1:61812470-61812489 None:intergenic 50.0%
CTCATAGCTCCTATAGGTGG+AGG - chr1_1:61813617-61813636 Msa0033930:intron 50.0%
GCAACTTTGCCTCCACCTAT+AGG + chr1_1:61813629-61813648 None:intergenic 50.0%
GATCACCCCACTATTCCATG+AGG + chr1_1:61813860-61813879 None:intergenic 50.0%
CTGGAGGAAAGCAAGTGTGT+TGG - chr1_1:61813992-61814011 Msa0033930:intron 50.0%
TCTTAAGCCGCCAGTTCTCA+TGG - chr1_1:61814094-61814113 Msa0033930:intron 50.0%
CTTAAGCCGCCAGTTCTCAT+GGG - chr1_1:61814095-61814114 Msa0033930:intron 50.0%
GGCCAGTGATTGTTTCAGTC+AGG - chr1_1:61814157-61814176 Msa0033930:intron 50.0%
GTGTCATCTTCAGGAAGTGG+GGG + chr1_1:61814528-61814547 None:intergenic 50.0%
! GGTGTCATCTTCAGGAAGTG+GGG + chr1_1:61814529-61814548 None:intergenic 50.0%
!! CGGTGTCATCTTCAGGAAGT+GGG + chr1_1:61814530-61814549 None:intergenic 50.0%
!! ACGGTGTCATCTTCAGGAAG+TGG + chr1_1:61814531-61814550 None:intergenic 50.0%
!! TTCAGGACGGTGTCATCTTC+AGG + chr1_1:61814537-61814556 None:intergenic 50.0%
TGAAGATGACACCGTCCTGA+AGG - chr1_1:61814536-61814555 Msa0033930:intron 50.0%
GGAACTGAAGGCTTGGGTAA+TGG - chr1_1:61814737-61814756 Msa0033930:CDS 50.0%
!! TTGCTAAGGGGAGCGCTTAC+CGG + chr1_1:61812088-61812107 None:intergenic 55.0%
GGATGGGACTCGAAGAAACC+TGG - chr1_1:61812584-61812603 Msa0033930:intron 55.0%
!! GTTTGGGTTGGTGGCTAGAG+TGG - chr1_1:61813257-61813276 Msa0033930:intron 55.0%
!! GGTTGGTGGCTAGAGTGGAA+TGG - chr1_1:61813262-61813281 Msa0033930:intron 55.0%
TCCCTTCCCATGAGAACTGG+CGG + chr1_1:61814104-61814123 None:intergenic 55.0%
CAAGCAAGGCTCCTTCAGGA+CGG + chr1_1:61814550-61814569 None:intergenic 55.0%
CTTCCAAGCAAGGCTCCTTC+AGG + chr1_1:61814554-61814573 None:intergenic 55.0%
GGCAGTCACACCTGTGTTTC+TGG + chr1_1:61814610-61814629 None:intergenic 55.0%
AGCGCTCCCCTTAGCAAACG+CGG - chr1_1:61812091-61812110 Msa0033930:three_prime_UTR 60.0%
AGCCGCCAGTTCTCATGGGA+AGG - chr1_1:61814099-61814118 Msa0033930:intron 60.0%
GCCGCCAGTTCTCATGGGAA+GGG - chr1_1:61814100-61814119 Msa0033930:intron 60.0%
CGTCCTGAAGGAGCCTTGCT+TGG - chr1_1:61814548-61814567 Msa0033930:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 61812081 61814946 61812081 ID=Msa0033930;Name=Msa0033930
chr1_1 mRNA 61812081 61814946 61812081 ID=Msa0033930-mRNA-1;Parent=Msa0033930;Name=Msa0033930-mRNA-1;_AED=0.28;_eAED=0.28;_QI=94|0.57|0.62|1|0.71|0.75|8|302|270
chr1_1 exon 61812081 61812520 61812081 ID=Msa0033930-mRNA-1:exon:19394;Parent=Msa0033930-mRNA-1
chr1_1 exon 61812611 61812679 61812611 ID=Msa0033930-mRNA-1:exon:19393;Parent=Msa0033930-mRNA-1
chr1_1 exon 61813022 61813059 61813022 ID=Msa0033930-mRNA-1:exon:19392;Parent=Msa0033930-mRNA-1
chr1_1 exon 61813132 61813245 61813132 ID=Msa0033930-mRNA-1:exon:19391;Parent=Msa0033930-mRNA-1
chr1_1 exon 61813365 61813497 61813365 ID=Msa0033930-mRNA-1:exon:19390;Parent=Msa0033930-mRNA-1
chr1_1 exon 61814345 61814449 61814345 ID=Msa0033930-mRNA-1:exon:19389;Parent=Msa0033930-mRNA-1
chr1_1 exon 61814565 61814654 61814565 ID=Msa0033930-mRNA-1:exon:19388;Parent=Msa0033930-mRNA-1
chr1_1 exon 61814727 61814946 61814727 ID=Msa0033930-mRNA-1:exon:19387;Parent=Msa0033930-mRNA-1
chr1_1 five_prime_UTR 61814853 61814946 61814853 ID=Msa0033930-mRNA-1:five_prime_utr;Parent=Msa0033930-mRNA-1
chr1_1 CDS 61814727 61814852 61814727 ID=Msa0033930-mRNA-1:cds;Parent=Msa0033930-mRNA-1
chr1_1 CDS 61814565 61814654 61814565 ID=Msa0033930-mRNA-1:cds;Parent=Msa0033930-mRNA-1
chr1_1 CDS 61814345 61814449 61814345 ID=Msa0033930-mRNA-1:cds;Parent=Msa0033930-mRNA-1
chr1_1 CDS 61813365 61813497 61813365 ID=Msa0033930-mRNA-1:cds;Parent=Msa0033930-mRNA-1
chr1_1 CDS 61813132 61813245 61813132 ID=Msa0033930-mRNA-1:cds;Parent=Msa0033930-mRNA-1
chr1_1 CDS 61813022 61813059 61813022 ID=Msa0033930-mRNA-1:cds;Parent=Msa0033930-mRNA-1
chr1_1 CDS 61812611 61812679 61812611 ID=Msa0033930-mRNA-1:cds;Parent=Msa0033930-mRNA-1
chr1_1 CDS 61812383 61812520 61812383 ID=Msa0033930-mRNA-1:cds;Parent=Msa0033930-mRNA-1
chr1_1 three_prime_UTR 61812081 61812382 61812081 ID=Msa0033930-mRNA-1:three_prime_utr;Parent=Msa0033930-mRNA-1
Gene Sequence

>Msa0033930

ATGAAGGCGCTAAGTATTGTTGTTGGCGGTGTTCCAATTCCAACGCTTTGTTCTAATGGAATTCGTAAACGTCAGTTCTGCGTTTCAGCTTCTTCTTCTTCTTCATCTTCATCAGGACCCAAAACGGTGGGAGTTGCAGCAGCTTCAAAGAGTGAATACAAGCCTGGGGTTATTGATGATTTGTTCCTCAATTTGTTTCGCACCAAATTGGTTCAGGAAGTGGGATGGGACTCGAAGAAACCTGGATATGACGGACTAATTGAAGTTGCTAACCGTCTAATGATGAAAGGCACTACAAACTCCGATACCATAGAAGCTACGAGCAAGTTTGTTAGCACTTATGTCTTGTTACAGGTACGAATTTTGAGGTCTTTGTTTCCTCCATTCCTTTTGGAGCTCTATAAAATGCTCATAGCTCCTATAGGTGGAGGCAAAGTTGCCGCTATAATGGTTGCAAGGGTTACTGCACTTACTTGTCAATGGCTCATGGGACCCTGCAAAGTCAATTCTGTAGACCTATCAGATGGAACCTCATGGAATAGTGGGGTGATCACTTATACCTTTCGCTGTGCATGTCGAAAGATGCAAGTATCTGGAGGAAAGCAAACCTTCTTCAAGGATCATATGGGAGTTCCATTACTCATGGAGCCCAACTTTGCTGATTATAGCTGTCAGTTCAAATTCGGAGTTCTTCCCCCACTTCCTGAAGATGACACCGTCCTGAAGGAGCCTTGCTTGGAAGCATGTCCAAATGCTTCCCTACGAAGATTGGCTTCCAGAAACACAGGTGTGACTGCCTGCCCAAAGACATGA

Protein sequence

>Msa0033930

MKALSIVVGGVPIPTLCSNGIRKRQFCVSASSSSSSSSGPKTVGVAAASKSEYKPGVIDDLFLNLFRTKLVQEVGWDSKKPGYDGLIEVANRLMMKGTTNSDTIEATSKFVSTYVLLQVRILRSLFPPFLLELYKMLIAPIGGGKVAAIMVARVTALTCQWLMGPCKVNSVDLSDGTSWNSGVITYTFRCACRKMQVSGGKQTFFKDHMGVPLLMEPNFADYSCQFKFGVLPPLPEDDTVLKEPCLEACPNASLRRLASRNTGVTACPKT*