Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20862.t1 | XP_003591392.1 | 96.7 | 306 | 8 | 1 | 1 | 306 | 1 | 304 | 1.40E-161 | 578.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20862.t1 | Q9S834 | 80.9 | 298 | 56 | 1 | 1 | 297 | 1 | 298 | 1.5e-129 | 463.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20862.t1 | G7ICX2 | 96.7 | 306 | 8 | 1 | 1 | 306 | 1 | 304 | 9.8e-162 | 578.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene20862 | 0.84504 | 5.20E-59 | -1.69E-46 |
| MS.gene049171 | MS.gene20862 | 0.845402 | 4.15E-59 | -1.69E-46 |
| MS.gene049217 | MS.gene20862 | 0.804417 | 2.18E-49 | -1.69E-46 |
| MS.gene049222 | MS.gene20862 | 0.855339 | 6.74E-62 | -1.69E-46 |
| MS.gene049257 | MS.gene20862 | 0.844031 | 9.72E-59 | -1.69E-46 |
| MS.gene049285 | MS.gene20862 | 0.813097 | 3.04E-51 | -1.69E-46 |
| MS.gene049609 | MS.gene20862 | 0.821836 | 3.27E-53 | -1.69E-46 |
| MS.gene049627 | MS.gene20862 | 0.800972 | 1.12E-48 | -1.69E-46 |
| MS.gene049633 | MS.gene20862 | 0.840879 | 6.66E-58 | -1.69E-46 |
| MS.gene049805 | MS.gene20862 | 0.810716 | 1.00E-50 | -1.69E-46 |
| MS.gene050163 | MS.gene20862 | 0.806439 | 8.22E-50 | -1.69E-46 |
| MS.gene050165 | MS.gene20862 | 0.802102 | 6.58E-49 | -1.69E-46 |
| MS.gene050170 | MS.gene20862 | 0.845191 | 4.74E-59 | -1.69E-46 |
| MS.gene050315 | MS.gene20862 | 0.81797 | 2.50E-52 | -1.69E-46 |
| MS.gene050403 | MS.gene20862 | 0.817371 | 3.41E-52 | -1.69E-46 |
| MS.gene050444 | MS.gene20862 | 0.825124 | 5.56E-54 | -1.69E-46 |
| MS.gene050496 | MS.gene20862 | 0.800239 | 1.58E-48 | -1.69E-46 |
| MS.gene050504 | MS.gene20862 | 0.815313 | 9.86E-52 | -1.69E-46 |
| MS.gene050507 | MS.gene20862 | 0.810117 | 1.35E-50 | -1.69E-46 |
| MS.gene050538 | MS.gene20862 | 0.836853 | 7.34E-57 | -1.69E-46 |
| MS.gene050553 | MS.gene20862 | 0.81789 | 2.61E-52 | -1.69E-46 |
| MS.gene050577 | MS.gene20862 | 0.829413 | 5.22E-55 | -1.69E-46 |
| MS.gene050593 | MS.gene20862 | 0.8147 | 1.35E-51 | -1.69E-46 |
| MS.gene050612 | MS.gene20862 | 0.808862 | 2.51E-50 | -1.69E-46 |
| MS.gene050647 | MS.gene20862 | -0.803603 | 3.22E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene20862 | 0.803707 | 3.07E-49 | -1.69E-46 |
| MS.gene050675 | MS.gene20862 | 0.800559 | 1.36E-48 | -1.69E-46 |
| MS.gene050699 | MS.gene20862 | 0.809785 | 1.59E-50 | -1.69E-46 |
| MS.gene050747 | MS.gene20862 | 0.863608 | 2.20E-64 | -1.69E-46 |
| MS.gene050772 | MS.gene20862 | 0.81076 | 9.82E-51 | -1.69E-46 |
| MS.gene05080 | MS.gene20862 | 0.836439 | 9.35E-57 | -1.69E-46 |
| MS.gene050812 | MS.gene20862 | 0.840058 | 1.09E-57 | -1.69E-46 |
| MS.gene05081 | MS.gene20862 | 0.867281 | 1.54E-65 | -1.69E-46 |
| MS.gene050868 | MS.gene20862 | 0.832603 | 8.60E-56 | -1.69E-46 |
| MS.gene050871 | MS.gene20862 | 0.830034 | 3.69E-55 | -1.69E-46 |
| MS.gene050904 | MS.gene20862 | 0.880509 | 5.18E-70 | -1.69E-46 |
| MS.gene050950 | MS.gene20862 | 0.857992 | 1.12E-62 | -1.69E-46 |
| MS.gene051317 | MS.gene20862 | 0.845142 | 4.88E-59 | -1.69E-46 |
| MS.gene051387 | MS.gene20862 | 0.815631 | 8.37E-52 | -1.69E-46 |
| MS.gene051525 | MS.gene20862 | 0.80969 | 1.67E-50 | -1.69E-46 |
| MS.gene051552 | MS.gene20862 | -0.843698 | 1.19E-58 | -1.69E-46 |
| MS.gene051666 | MS.gene20862 | 0.828278 | 9.83E-55 | -1.69E-46 |
| MS.gene051694 | MS.gene20862 | 0.815881 | 7.36E-52 | -1.69E-46 |
| MS.gene051734 | MS.gene20862 | 0.803721 | 3.05E-49 | -1.69E-46 |
| MS.gene051838 | MS.gene20862 | 0.872932 | 2.17E-67 | -1.69E-46 |
| MS.gene051858 | MS.gene20862 | 0.820563 | 6.42E-53 | -1.69E-46 |
| MS.gene051941 | MS.gene20862 | 0.813364 | 2.66E-51 | -1.69E-46 |
| MS.gene051973 | MS.gene20862 | -0.800916 | 1.15E-48 | -1.69E-46 |
| MS.gene052164 | MS.gene20862 | 0.808075 | 3.70E-50 | -1.69E-46 |
| MS.gene05240 | MS.gene20862 | -0.800335 | 1.51E-48 | -1.69E-46 |
| MS.gene052469 | MS.gene20862 | 0.837167 | 6.10E-57 | -1.69E-46 |
| MS.gene052486 | MS.gene20862 | 0.808649 | 2.79E-50 | -1.69E-46 |
| MS.gene052501 | MS.gene20862 | 0.826392 | 2.78E-54 | -1.69E-46 |
| MS.gene052503 | MS.gene20862 | 0.83022 | 3.32E-55 | -1.69E-46 |
| MS.gene052505 | MS.gene20862 | 0.814575 | 1.44E-51 | -1.69E-46 |
| MS.gene052606 | MS.gene20862 | -0.840963 | 6.34E-58 | -1.69E-46 |
| MS.gene052615 | MS.gene20862 | 0.830606 | 2.67E-55 | -1.69E-46 |
| MS.gene052823 | MS.gene20862 | 0.822226 | 2.65E-53 | -1.69E-46 |
| MS.gene052825 | MS.gene20862 | 0.832946 | 7.07E-56 | -1.69E-46 |
| MS.gene052870 | MS.gene20862 | 0.831542 | 1.57E-55 | -1.69E-46 |
| MS.gene052872 | MS.gene20862 | 0.840375 | 9.03E-58 | -1.69E-46 |
| MS.gene052966 | MS.gene20862 | 0.842956 | 1.88E-58 | -1.69E-46 |
| MS.gene052982 | MS.gene20862 | 0.811307 | 7.48E-51 | -1.69E-46 |
| MS.gene053107 | MS.gene20862 | 0.806914 | 6.53E-50 | -1.69E-46 |
| MS.gene053203 | MS.gene20862 | 0.830781 | 2.42E-55 | -1.69E-46 |
| MS.gene053207 | MS.gene20862 | 0.817055 | 4.02E-52 | -1.69E-46 |
| MS.gene053285 | MS.gene20862 | 0.800156 | 1.65E-48 | -1.69E-46 |
| MS.gene053421 | MS.gene20862 | -0.817891 | 2.61E-52 | -1.69E-46 |
| MS.gene053479 | MS.gene20862 | 0.847092 | 1.44E-59 | -1.69E-46 |
| MS.gene053480 | MS.gene20862 | 0.822834 | 1.92E-53 | -1.69E-46 |
| MS.gene053579 | MS.gene20862 | 0.853524 | 2.26E-61 | -1.69E-46 |
| MS.gene053632 | MS.gene20862 | 0.808618 | 2.83E-50 | -1.69E-46 |
| MS.gene053824 | MS.gene20862 | 0.863951 | 1.73E-64 | -1.69E-46 |
| MS.gene054107 | MS.gene20862 | 0.841386 | 4.90E-58 | -1.69E-46 |
| MS.gene054344 | MS.gene20862 | 0.846128 | 2.64E-59 | -1.69E-46 |
| MS.gene054408 | MS.gene20862 | 0.846792 | 1.74E-59 | -1.69E-46 |
| MS.gene054595 | MS.gene20862 | 0.805487 | 1.30E-49 | -1.69E-46 |
| MS.gene054600 | MS.gene20862 | 0.828123 | 1.07E-54 | -1.69E-46 |
| MS.gene054706 | MS.gene20862 | -0.819114 | 1.38E-52 | -1.69E-46 |
| MS.gene05470 | MS.gene20862 | 0.844099 | 9.32E-59 | -1.69E-46 |
| MS.gene054884 | MS.gene20862 | -0.862309 | 5.55E-64 | -1.69E-46 |
| MS.gene054927 | MS.gene20862 | 0.801343 | 9.42E-49 | -1.69E-46 |
| MS.gene05494 | MS.gene20862 | 0.818925 | 1.52E-52 | -1.69E-46 |
| MS.gene055158 | MS.gene20862 | -0.83216 | 1.11E-55 | -1.69E-46 |
| MS.gene055159 | MS.gene20862 | -0.846392 | 2.23E-59 | -1.69E-46 |
| MS.gene055206 | MS.gene20862 | 0.837863 | 4.04E-57 | -1.69E-46 |
| MS.gene055224 | MS.gene20862 | 0.825307 | 5.03E-54 | -1.69E-46 |
| MS.gene055370 | MS.gene20862 | 0.815435 | 9.26E-52 | -1.69E-46 |
| MS.gene055502 | MS.gene20862 | 0.84229 | 2.83E-58 | -1.69E-46 |
| MS.gene055539 | MS.gene20862 | 0.869086 | 4.03E-66 | -1.69E-46 |
| MS.gene055577 | MS.gene20862 | 0.866345 | 3.05E-65 | -1.69E-46 |
| MS.gene055741 | MS.gene20862 | 0.851638 | 7.79E-61 | -1.69E-46 |
| MS.gene055744 | MS.gene20862 | 0.845851 | 3.14E-59 | -1.69E-46 |
| MS.gene055748 | MS.gene20862 | 0.855121 | 7.80E-62 | -1.69E-46 |
| MS.gene055750 | MS.gene20862 | 0.829011 | 6.53E-55 | -1.69E-46 |
| MS.gene055751 | MS.gene20862 | 0.838902 | 2.18E-57 | -1.69E-46 |
| MS.gene05589 | MS.gene20862 | 0.856092 | 4.06E-62 | -1.69E-46 |
| MS.gene055941 | MS.gene20862 | 0.847727 | 9.63E-60 | -1.69E-46 |
| MS.gene056040 | MS.gene20862 | 0.800715 | 1.27E-48 | -1.69E-46 |
| MS.gene056166 | MS.gene20862 | 0.80239 | 5.74E-49 | -1.69E-46 |
| MS.gene056283 | MS.gene20862 | 0.806751 | 7.06E-50 | -1.69E-46 |
| MS.gene056387 | MS.gene20862 | 0.802649 | 5.07E-49 | -1.69E-46 |
| MS.gene056504 | MS.gene20862 | 0.818439 | 1.96E-52 | -1.69E-46 |
| MS.gene056610 | MS.gene20862 | 0.815598 | 8.52E-52 | -1.69E-46 |
| MS.gene056678 | MS.gene20862 | -0.800229 | 1.59E-48 | -1.69E-46 |
| MS.gene056692 | MS.gene20862 | 0.849807 | 2.55E-60 | -1.69E-46 |
| MS.gene056877 | MS.gene20862 | 0.831052 | 2.08E-55 | -1.69E-46 |
| MS.gene056903 | MS.gene20862 | 0.838827 | 2.28E-57 | -1.69E-46 |
| MS.gene057019 | MS.gene20862 | 0.807176 | 5.75E-50 | -1.69E-46 |
| MS.gene057076 | MS.gene20862 | 0.804746 | 1.86E-49 | -1.69E-46 |
| MS.gene057332 | MS.gene20862 | 0.86141 | 1.05E-63 | -1.69E-46 |
| MS.gene057658 | MS.gene20862 | 0.866241 | 3.29E-65 | -1.69E-46 |
| MS.gene057831 | MS.gene20862 | 0.859344 | 4.41E-63 | -1.69E-46 |
| MS.gene058120 | MS.gene20862 | 0.810249 | 1.27E-50 | -1.69E-46 |
| MS.gene058130 | MS.gene20862 | 0.810206 | 1.29E-50 | -1.69E-46 |
| MS.gene058158 | MS.gene20862 | -0.827623 | 1.41E-54 | -1.69E-46 |
| MS.gene058334 | MS.gene20862 | -0.8151 | 1.10E-51 | -1.69E-46 |
| MS.gene058338 | MS.gene20862 | 0.828631 | 8.07E-55 | -1.69E-46 |
| MS.gene05837 | MS.gene20862 | 0.882874 | 7.22E-71 | -1.69E-46 |
| MS.gene058418 | MS.gene20862 | -0.853413 | 2.43E-61 | -1.69E-46 |
| MS.gene058419 | MS.gene20862 | 0.814434 | 1.54E-51 | -1.69E-46 |
| MS.gene058444 | MS.gene20862 | 0.84128 | 5.23E-58 | -1.69E-46 |
| MS.gene058544 | MS.gene20862 | 0.835882 | 1.30E-56 | -1.69E-46 |
| MS.gene058603 | MS.gene20862 | -0.808946 | 2.41E-50 | -1.69E-46 |
| MS.gene058700 | MS.gene20862 | 0.836199 | 1.08E-56 | -1.69E-46 |
| MS.gene058773 | MS.gene20862 | 0.814453 | 1.53E-51 | -1.69E-46 |
| MS.gene058838 | MS.gene20862 | 0.871074 | 9.01E-67 | -1.69E-46 |
| MS.gene059023 | MS.gene20862 | 0.897591 | 1.21E-76 | -1.69E-46 |
| MS.gene05912 | MS.gene20862 | 0.820662 | 6.09E-53 | -1.69E-46 |
| MS.gene05914 | MS.gene20862 | 0.873804 | 1.11E-67 | -1.69E-46 |
| MS.gene059303 | MS.gene20862 | 0.817846 | 2.67E-52 | -1.69E-46 |
| MS.gene05934 | MS.gene20862 | 0.844595 | 6.86E-59 | -1.69E-46 |
| MS.gene059512 | MS.gene20862 | 0.810473 | 1.13E-50 | -1.69E-46 |
| MS.gene059526 | MS.gene20862 | -0.850844 | 1.31E-60 | -1.69E-46 |
| MS.gene05960 | MS.gene20862 | -0.854198 | 1.44E-61 | -1.69E-46 |
| MS.gene059667 | MS.gene20862 | 0.808957 | 2.40E-50 | -1.69E-46 |
| MS.gene059677 | MS.gene20862 | 0.817928 | 2.56E-52 | -1.69E-46 |
| MS.gene059718 | MS.gene20862 | 0.829268 | 5.66E-55 | -1.69E-46 |
| MS.gene059756 | MS.gene20862 | 0.826874 | 2.13E-54 | -1.69E-46 |
| MS.gene059801 | MS.gene20862 | 0.847118 | 1.42E-59 | -1.69E-46 |
| MS.gene059902 | MS.gene20862 | 0.813934 | 1.99E-51 | -1.69E-46 |
| MS.gene06000 | MS.gene20862 | 0.841559 | 4.41E-58 | -1.69E-46 |
| MS.gene06027 | MS.gene20862 | 0.809264 | 2.06E-50 | -1.69E-46 |
| MS.gene060762 | MS.gene20862 | 0.855884 | 4.67E-62 | -1.69E-46 |
| MS.gene06077 | MS.gene20862 | 0.835365 | 1.75E-56 | -1.69E-46 |
| MS.gene06092 | MS.gene20862 | 0.860209 | 2.42E-63 | -1.69E-46 |
| MS.gene060982 | MS.gene20862 | 0.828226 | 1.01E-54 | -1.69E-46 |
| MS.gene061150 | MS.gene20862 | 0.846184 | 2.55E-59 | -1.69E-46 |
| MS.gene061231 | MS.gene20862 | 0.881378 | 2.52E-70 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20862.t1 | MTR_1g086940 | 96.732 | 306 | 8 | 1 | 1 | 306 | 1 | 304 | 0.0 | 606 |
| MS.gene20862.t1 | MTR_7g109610 | 81.457 | 302 | 48 | 4 | 10 | 306 | 3 | 301 | 2.37e-174 | 484 |
| MS.gene20862.t1 | MTR_7g082980 | 51.456 | 206 | 87 | 2 | 80 | 284 | 57 | 250 | 2.63e-69 | 218 |
| MS.gene20862.t1 | MTR_4g075100 | 44.681 | 235 | 121 | 3 | 77 | 303 | 2 | 235 | 4.17e-62 | 197 |
| MS.gene20862.t1 | MTR_5g026840 | 51.497 | 167 | 81 | 0 | 118 | 284 | 93 | 259 | 1.61e-56 | 184 |
| MS.gene20862.t1 | MTR_4g069800 | 47.929 | 169 | 88 | 0 | 116 | 284 | 102 | 270 | 3.25e-50 | 167 |
| MS.gene20862.t1 | MTR_4g069800 | 47.853 | 163 | 85 | 0 | 122 | 284 | 76 | 238 | 6.35e-49 | 163 |
| MS.gene20862.t1 | MTR_4g034690 | 37.186 | 199 | 116 | 2 | 86 | 283 | 3 | 193 | 4.48e-44 | 149 |
| MS.gene20862.t1 | MTR_4g102000 | 34.307 | 274 | 147 | 6 | 11 | 284 | 61 | 301 | 6.63e-42 | 147 |
| MS.gene20862.t1 | MTR_0002s0730 | 34.171 | 199 | 122 | 2 | 86 | 283 | 3 | 193 | 1.22e-38 | 136 |
| MS.gene20862.t1 | MTR_4g069800 | 47.619 | 126 | 66 | 0 | 116 | 241 | 102 | 227 | 2.51e-34 | 125 |
| MS.gene20862.t1 | MTR_4g099360 | 37.629 | 194 | 106 | 2 | 101 | 286 | 99 | 285 | 9.45e-31 | 117 |
| MS.gene20862.t1 | MTR_7g112640 | 31.609 | 174 | 108 | 3 | 122 | 284 | 119 | 292 | 1.80e-24 | 101 |
| MS.gene20862.t1 | MTR_1g106550 | 33.516 | 182 | 105 | 4 | 116 | 284 | 158 | 336 | 3.11e-19 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20862.t1 | AT1G02560 | 80.872 | 298 | 56 | 1 | 1 | 297 | 1 | 298 | 7.85e-175 | 485 |
| MS.gene20862.t1 | AT1G66670 | 55.689 | 167 | 74 | 0 | 118 | 284 | 90 | 256 | 3.37e-63 | 202 |
| MS.gene20862.t1 | AT5G45390 | 53.216 | 171 | 80 | 0 | 114 | 284 | 80 | 250 | 8.03e-61 | 196 |
| MS.gene20862.t1 | AT5G23140 | 46.701 | 197 | 103 | 2 | 109 | 304 | 44 | 239 | 6.76e-58 | 186 |
| MS.gene20862.t1 | AT1G11750 | 38.148 | 270 | 154 | 5 | 20 | 284 | 6 | 267 | 1.98e-49 | 166 |
| MS.gene20862.t1 | AT1G11750 | 36.842 | 285 | 155 | 5 | 20 | 284 | 6 | 285 | 4.89e-48 | 162 |
| MS.gene20862.t1 | ATCG00670 | 37.688 | 199 | 115 | 3 | 86 | 283 | 3 | 193 | 6.38e-46 | 154 |
| MS.gene20862.t1 | AT1G12410 | 33.688 | 282 | 161 | 5 | 10 | 287 | 4 | 263 | 3.33e-41 | 144 |
| MS.gene20862.t1 | AT4G17040 | 38.144 | 194 | 105 | 2 | 101 | 286 | 100 | 286 | 3.61e-37 | 134 |
| MS.gene20862.t1 | AT1G09130 | 36.111 | 180 | 104 | 2 | 116 | 284 | 124 | 303 | 9.10e-32 | 121 |
| MS.gene20862.t1 | AT1G09130 | 36.111 | 180 | 104 | 2 | 116 | 284 | 124 | 303 | 9.10e-32 | 121 |
| MS.gene20862.t1 | AT1G09130 | 36.111 | 180 | 104 | 2 | 116 | 284 | 124 | 303 | 2.36e-31 | 120 |
| MS.gene20862.t1 | AT1G49970 | 33.146 | 178 | 109 | 2 | 116 | 283 | 174 | 351 | 1.14e-21 | 94.4 |
Find 82 sgRNAs with CRISPR-Local
Find 406 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTGTATGGTGATCAATTT+TGG | 0.210761 | 1.3:+61539119 | MS.gene20862:CDS |
| GTGTTCTTCTAGGGAGGATT+TGG | 0.266446 | 1.3:+61539248 | MS.gene20862:intron |
| ATCGATGAGTCCATATTCTT+TGG | 0.288327 | 1.3:-61543802 | None:intergenic |
| GCAAAAGAAGCCAAAGAATA+TGG | 0.292792 | 1.3:+61543792 | MS.gene20862:CDS |
| GATAGGACAGATACCCATTC+AGG | 0.309008 | 1.3:-61543710 | None:intergenic |
| GGAGTTCACGTCAGGGTATT+TGG | 0.314629 | 1.3:+61539152 | MS.gene20862:CDS |
| TGAATCATTATCCTTGAGTT+TGG | 0.321613 | 1.3:-61543200 | None:intergenic |
| GCAAACTGACATAGATATTC+AGG | 0.327655 | 1.3:+61543250 | MS.gene20862:CDS |
| TAAACTTTGCCCAGTTTGAT+AGG | 0.348450 | 1.3:-61543727 | None:intergenic |
| AACGACGGACAAACCTTGTT+TGG | 0.358156 | 1.3:-61539550 | None:intergenic |
| GATCAACAGCATCAAGATAA+AGG | 0.360915 | 1.3:-61539528 | None:intergenic |
| TGTTCTTCTAGGGAGGATTT+GGG | 0.362409 | 1.3:+61539249 | MS.gene20862:intron |
| GGGTATCTGTCCTATCAAAC+TGG | 0.363774 | 1.3:+61543717 | MS.gene20862:CDS |
| TGTGCATAGGTAGGAAAATA+AGG | 0.368409 | 1.3:-61539285 | None:intergenic |
| CCTTCGAACTCTTTGCTCTC+CGG | 0.369539 | 1.3:+61538386 | MS.gene20862:CDS |
| GGAAACGCTCCTGCACCATT+GGG | 0.370261 | 1.3:-61539323 | None:intergenic |
| TGGAAACGCTCCTGCACCAT+TGG | 0.372062 | 1.3:-61539324 | None:intergenic |
| GGAATCATTACCTTTGGTTC+CGG | 0.378564 | 1.3:-61543051 | None:intergenic |
| TCTCAAAGCTCTTCAGCCTT+TGG | 0.393350 | 1.3:+61543842 | MS.gene20862:CDS |
| CTTCGAACTCTTTGCTCTCC+GGG | 0.395033 | 1.3:+61538387 | MS.gene20862:CDS |
| ACCAGCTGTAACTGATCCTC+CGG | 0.426032 | 1.3:-61539737 | None:intergenic |
| ACCCGAGAGGAGTTCACGTC+AGG | 0.435644 | 1.3:+61539144 | MS.gene20862:CDS |
| AGGAGAGTTGAGTGTAAGAG+AGG | 0.441042 | 1.3:-61538312 | None:intergenic |
| CCCTCTTCTGCAGCTGCCAA+AGG | 0.448770 | 1.3:-61543858 | None:intergenic |
| GTTGAGTGTAAGAGAGGAAG+AGG | 0.452445 | 1.3:-61538306 | None:intergenic |
| ATCACCATACACAGCTTTCA+CGG | 0.458968 | 1.3:-61539110 | None:intergenic |
| CATCACAAGGCAAACCTGAA+TGG | 0.459835 | 1.3:+61543696 | MS.gene20862:CDS |
| TTGAGTGTAAGAGAGGAAGA+GGG | 0.464850 | 1.3:-61538305 | None:intergenic |
| GTCAGGGTATTTGGTCCATA+AGG | 0.486578 | 1.3:+61539161 | MS.gene20862:CDS |
| CTGTGATTTGCAGGAAATTG+AGG | 0.490449 | 1.3:+61539050 | MS.gene20862:intron |
| ACCCTGACGTGAACTCCTCT+CGG | 0.491382 | 1.3:-61539146 | None:intergenic |
| TGGCCCTTGTCCTTGTGCAT+AGG | 0.495346 | 1.3:-61539298 | None:intergenic |
| ATCACAAGGCAAACCTGAAT+GGG | 0.495914 | 1.3:+61543697 | MS.gene20862:CDS |
| CACTGTCTGTGTTGGATTGG+CGG | 0.498037 | 1.3:+61539935 | MS.gene20862:CDS |
| CTGCTTAGTGCCGGAACCAA+AGG | 0.500748 | 1.3:+61543041 | MS.gene20862:CDS |
| TGCAGAAGAGGGTAAAGATC+GGG | 0.502387 | 1.3:+61543869 | MS.gene20862:CDS |
| GTGAGAGTGAGAAGAAGAAC+CGG | 0.507930 | 1.3:-61538351 | None:intergenic |
| AAACGCTCCTGCACCATTGG+GGG | 0.517765 | 1.3:-61539321 | None:intergenic |
| GTCCACTGTCTGTGTTGGAT+TGG | 0.520930 | 1.3:+61539932 | MS.gene20862:CDS |
| TGGAGCAGTTGACGATGATA+TGG | 0.521009 | 1.3:+61539483 | MS.gene20862:CDS |
| ACACAGACAGTGGACACATC+AGG | 0.523363 | 1.3:-61539924 | None:intergenic |
| GAAACGCTCCTGCACCATTG+GGG | 0.523580 | 1.3:-61539322 | None:intergenic |
| TCTGTGTTGGATTGGCGGCT+AGG | 0.523757 | 1.3:+61539940 | MS.gene20862:CDS |
| GCCTTTGGCAGCTGCAGAAG+AGG | 0.529560 | 1.3:+61543857 | MS.gene20862:CDS |
| GATGTGTCCACTGTCTGTGT+TGG | 0.530369 | 1.3:+61539927 | MS.gene20862:CDS |
| TGAGTGTAAGAGAGGAAGAG+GGG | 0.531079 | 1.3:-61538304 | None:intergenic |
| AGAAGAAGAACCGGTGGTGG+GGG | 0.535745 | 1.3:-61538342 | None:intergenic |
| ATGATTCATCAACCGCTTGG+TGG | 0.536787 | 1.3:+61543215 | MS.gene20862:CDS |
| CCCGGAGGATCAGTTACAGC+TGG | 0.538507 | 1.3:+61539736 | MS.gene20862:CDS |
| CCTACCTATGCACAAGGACA+AGG | 0.541580 | 1.3:+61539294 | MS.gene20862:CDS |
| GTGAGAAGAAGAACCGGTGG+TGG | 0.542322 | 1.3:-61538345 | None:intergenic |
| GTCATGTATGTAAATTCTCC+CGG | 0.542326 | 1.3:+61539718 | MS.gene20862:CDS |
| AAAGTTGACTTATAACACTC+TGG | 0.552761 | 1.3:-61539344 | None:intergenic |
| GAGTGTAAGAGAGGAAGAGG+GGG | 0.557336 | 1.3:-61538303 | None:intergenic |
| GTTTCAGCTTGCCAAACTCA+AGG | 0.562494 | 1.3:+61543189 | MS.gene20862:CDS |
| GTAGGAAAATAAGGCGAAGA+CGG | 0.567411 | 1.3:-61539276 | None:intergenic |
| CCCTGACGTGAACTCCTCTC+GGG | 0.567797 | 1.3:-61539145 | None:intergenic |
| CTGCAGAAGAGGGTAAAGAT+CGG | 0.572376 | 1.3:+61543868 | MS.gene20862:CDS |
| TGAGAAGAAGAACCGGTGGT+GGG | 0.577299 | 1.3:-61538344 | None:intergenic |
| AAATGAAATGCTGCATCACA+AGG | 0.584369 | 1.3:+61543683 | MS.gene20862:CDS |
| CCTTTGGCAGCTGCAGAAGA+GGG | 0.585082 | 1.3:+61543858 | MS.gene20862:CDS |
| TCTGCCGTGAAAGCTGTGTA+TGG | 0.585170 | 1.3:+61539106 | MS.gene20862:CDS |
| CCTTGTCCTTGTGCATAGGT+AGG | 0.585374 | 1.3:-61539294 | None:intergenic |
| AAGTTTAGAGAAAATTAACC+AGG | 0.591158 | 1.3:+61543743 | MS.gene20862:CDS |
| GAGAAGAAGAACCGGTGGTG+GGG | 0.592581 | 1.3:-61538343 | None:intergenic |
| ATAATGATTCATCAACCGCT+TGG | 0.597203 | 1.3:+61543212 | MS.gene20862:CDS |
| TAGAGAATAATCCGTTGTGG+TGG | 0.606980 | 1.3:+61539463 | MS.gene20862:intron |
| TGATGCTGTTGATCCAAACA+AGG | 0.607848 | 1.3:+61539537 | MS.gene20862:CDS |
| CCCGAGAGGAGTTCACGTCA+GGG | 0.610211 | 1.3:+61539145 | MS.gene20862:CDS |
| CCGGAGAGCAAAGAGTTCGA+AGG | 0.611003 | 1.3:-61538386 | None:intergenic |
| CCAGCTGTAACTGATCCTCC+GGG | 0.618930 | 1.3:-61539736 | None:intergenic |
| GGTATCTGTCCTATCAAACT+GGG | 0.622810 | 1.3:+61543718 | MS.gene20862:CDS |
| AAAGAATATGGACTCATCGA+TGG | 0.623110 | 1.3:+61543804 | MS.gene20862:CDS |
| CGCCAATCCAACACAGACAG+TGG | 0.626024 | 1.3:-61539934 | None:intergenic |
| AAAGGCTGAAGAGCTTTGAG+AGG | 0.630190 | 1.3:-61543840 | None:intergenic |
| TGGCAATATTTGATACAATG+AGG | 0.631433 | 1.3:+61539892 | MS.gene20862:CDS |
| ATTTAGAGAATAATCCGTTG+TGG | 0.633851 | 1.3:+61539460 | MS.gene20862:intron |
| CTACCTATGCACAAGGACAA+GGG | 0.671421 | 1.3:+61539295 | MS.gene20862:CDS |
| CGTCAACTGCTCCACCACAA+CGG | 0.680926 | 1.3:-61539474 | None:intergenic |
| CCTCCTTGAAAACCACCAAG+CGG | 0.689995 | 1.3:-61543227 | None:intergenic |
| ATGTATGTAAATTCTCCCGG+AGG | 0.710686 | 1.3:+61539721 | MS.gene20862:CDS |
| AGAGTGAGAAGAAGAACCGG+TGG | 0.741682 | 1.3:-61538348 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTATAAATCAAGTAAT+CGG | - | chr1.3:61540989-61541008 | None:intergenic | 10.0% |
| !! | ATAATTATCTAAAAAAAGAT+AGG | - | chr1.3:61540157-61540176 | None:intergenic | 10.0% |
| !!! | ATGAACAAAATTTAAAATAT+AGG | + | chr1.3:61540325-61540344 | MS.gene20862:intron | 10.0% |
| !!! | TAAGGAATATTATTTTATTT+AGG | + | chr1.3:61541664-61541683 | MS.gene20862:intron | 10.0% |
| !!! | TAATTAAGGTTTTATATTAA+TGG | - | chr1.3:61542175-61542194 | None:intergenic | 10.0% |
| !!! | TTATATGATTATATATCTTT+TGG | + | chr1.3:61540410-61540429 | MS.gene20862:intron | 10.0% |
| !! | ATAAATATTCTATGACTTAA+AGG | + | chr1.3:61541182-61541201 | MS.gene20862:intron | 15.0% |
| !! | ATATTATGATAAATTTGAAC+TGG | + | chr1.3:61538738-61538757 | MS.gene20862:intron | 15.0% |
| !! | GTAACAAAAAATAACTTAAA+AGG | + | chr1.3:61541213-61541232 | MS.gene20862:intron | 15.0% |
| !! | GTTATAAACATATAACTTAA+AGG | + | chr1.3:61541268-61541287 | MS.gene20862:intron | 15.0% |
| !! | TAAAATTGAGTTAAAAGAAA+AGG | - | chr1.3:61538485-61538504 | None:intergenic | 15.0% |
| !! | TTTAATATTATCATGGTTTA+GGG | - | chr1.3:61543409-61543428 | None:intergenic | 15.0% |
| !!! | ACATTTGTTTTAAAAATAAG+AGG | - | chr1.3:61542266-61542285 | None:intergenic | 15.0% |
| !!! | AGTTATTTTTTGTTACAAAT+TGG | - | chr1.3:61541209-61541228 | None:intergenic | 15.0% |
| !!! | ATTATTTTATTTAGGCTATT+TGG | + | chr1.3:61541672-61541691 | MS.gene20862:intron | 15.0% |
| !!! | TAATTACTTCACTTTTATAA+CGG | + | chr1.3:61541343-61541362 | MS.gene20862:intron | 15.0% |
| !!! | TACAAGTTAGTATATTTTTT+AGG | + | chr1.3:61540722-61540741 | MS.gene20862:intron | 15.0% |
| !!! | TCTTATTTTTAAAACAAATG+TGG | + | chr1.3:61542265-61542284 | MS.gene20862:intron | 15.0% |
| !!! | TCTTTTTCATAGAAAATTAA+AGG | + | chr1.3:61543348-61543367 | MS.gene20862:intron | 15.0% |
| !!! | TTATATTTTACTTCTACTAA+GGG | + | chr1.3:61539015-61539034 | MS.gene20862:intron | 15.0% |
| !!! | TTTATATTTTACTTCTACTA+AGG | + | chr1.3:61539014-61539033 | MS.gene20862:intron | 15.0% |
| !! | AAAATAGGAATATAAGAGTA+TGG | - | chr1.3:61543449-61543468 | None:intergenic | 20.0% |
| !! | AAACATAGAAAATGACAAAA+GGG | - | chr1.3:61540234-61540253 | None:intergenic | 20.0% |
| !! | AAATACTAGATATGAAAGAT+CGG | + | chr1.3:61541465-61541484 | MS.gene20862:intron | 20.0% |
| !! | AAATAGCATAGAATATTCTA+CGG | - | chr1.3:61538994-61539013 | None:intergenic | 20.0% |
| !! | AATAAAAATAGAACAGGTAT+AGG | - | chr1.3:61543478-61543497 | None:intergenic | 20.0% |
| !! | AATAGATTATCAATAATCGA+AGG | - | chr1.3:61539435-61539454 | None:intergenic | 20.0% |
| !! | ACTAAAATCAAGCAAAAAAT+AGG | - | chr1.3:61542243-61542262 | None:intergenic | 20.0% |
| !! | AGTAAAAAATCCTTACATAT+TGG | - | chr1.3:61539371-61539390 | None:intergenic | 20.0% |
| !! | AGTAATTGATGAATTTAAAC+AGG | + | chr1.3:61541535-61541554 | MS.gene20862:intron | 20.0% |
| !! | ATAAAAATAAGAACTTTACC+AGG | - | chr1.3:61538511-61538530 | None:intergenic | 20.0% |
| !! | ATAGATATTCAGGTATATAT+AGG | + | chr1.3:61543260-61543279 | MS.gene20862:intron | 20.0% |
| !! | ATAGTATTGTCTTCAAAAAT+AGG | - | chr1.3:61541312-61541331 | None:intergenic | 20.0% |
| !! | ATATAATGTATGCTCAATAT+AGG | - | chr1.3:61541400-61541419 | None:intergenic | 20.0% |
| !! | CTACTAGCAAAATTTAAAAA+GGG | - | chr1.3:61538646-61538665 | None:intergenic | 20.0% |
| !! | GTAATTGATGAATTTAAACA+GGG | + | chr1.3:61541536-61541555 | MS.gene20862:intron | 20.0% |
| !! | GTTATAATCATGTAACTTAA+AGG | - | chr1.3:61540766-61540785 | None:intergenic | 20.0% |
| !! | GTTTAATATTATCATGGTTT+AGG | - | chr1.3:61543410-61543429 | None:intergenic | 20.0% |
| !! | TAAAAAAAGATAGGCTTAAT+AGG | - | chr1.3:61540148-61540167 | None:intergenic | 20.0% |
| !! | TAATATTTCATTCTTCTTGT+GGG | + | chr1.3:61539963-61539982 | MS.gene20862:intron | 20.0% |
| !! | TACTAGCAAAATTTAAAAAG+GGG | - | chr1.3:61538645-61538664 | None:intergenic | 20.0% |
| !! | TATAATGTATGCTCAATATA+GGG | - | chr1.3:61541399-61541418 | None:intergenic | 20.0% |
| !! | TTGAATGCTTAATTATACAA+TGG | - | chr1.3:61541586-61541605 | None:intergenic | 20.0% |
| !!! | AATTACTTCACTTTTATAAC+GGG | + | chr1.3:61541344-61541363 | MS.gene20862:intron | 20.0% |
| !!! | AATTTAAAATATAGGATACC+AGG | + | chr1.3:61540333-61540352 | MS.gene20862:intron | 20.0% |
| !!! | ACGTTTTTTTAGTAAGAAAT+TGG | + | chr1.3:61540799-61540818 | MS.gene20862:intron | 20.0% |
| !!! | ATCCATTTTTCTTCTTTTTT+AGG | + | chr1.3:61543093-61543112 | MS.gene20862:intron | 20.0% |
| !!! | ATTTTATCAAAAGAAACAAG+AGG | - | chr1.3:61543322-61543341 | None:intergenic | 20.0% |
| !!! | CTTTTTAAATTTTGCTAGTA+GGG | + | chr1.3:61538645-61538664 | MS.gene20862:intron | 20.0% |
| !!! | GCAAATATTTTATGACTTAA+AGG | - | chr1.3:61540826-61540845 | None:intergenic | 20.0% |
| !!! | GCATTACTAATAAACTTTTA+AGG | + | chr1.3:61541646-61541665 | MS.gene20862:intron | 20.0% |
| !!! | TGTTCAATTTTAAGAATAAG+CGG | + | chr1.3:61542754-61542773 | MS.gene20862:intron | 20.0% |
| !!! | TTTAACTCAATTTTAATTCC+TGG | + | chr1.3:61538490-61538509 | MS.gene20862:intron | 20.0% |
| !!! | TTTACTTGTTTCTTTGTTTT+GGG | + | chr1.3:61538597-61538616 | MS.gene20862:intron | 20.0% |
| !!! | TTTTCAAGCACTAAATTAAA+AGG | - | chr1.3:61542210-61542229 | None:intergenic | 20.0% |
| ! | AACATAGAAAATGACAAAAG+GGG | - | chr1.3:61540233-61540252 | None:intergenic | 25.0% |
| ! | AAGTTTAGAGAAAATTAACC+AGG | + | chr1.3:61543743-61543762 | MS.gene20862:CDS | 25.0% |
| ! | AATAACTTAAAAGGACCAAT+CGG | + | chr1.3:61541222-61541241 | MS.gene20862:intron | 25.0% |
| ! | AATACTAGATATGAAAGATC+GGG | + | chr1.3:61541466-61541485 | MS.gene20862:intron | 25.0% |
| ! | AATAGCATAGAATATTCTAC+GGG | - | chr1.3:61538993-61539012 | None:intergenic | 25.0% |
| ! | ATGAAAATACTTAACCAAGA+GGG | - | chr1.3:61542401-61542420 | None:intergenic | 25.0% |
| ! | ATTACATGTAGTCTAAACAT+AGG | + | chr1.3:61539809-61539828 | MS.gene20862:intron | 25.0% |
| ! | CCTACTAGCAAAATTTAAAA+AGG | - | chr1.3:61538647-61538666 | None:intergenic | 25.0% |
| ! | GAAACATAGAAAATGACAAA+AGG | - | chr1.3:61540235-61540254 | None:intergenic | 25.0% |
| ! | GAAAGAAAAATATACATACC+CGG | - | chr1.3:61538408-61538427 | None:intergenic | 25.0% |
| ! | GAATGGAATAAAAATAGAAC+AGG | - | chr1.3:61543484-61543503 | None:intergenic | 25.0% |
| ! | GACCTAAAAAAGAAGAAAAA+TGG | - | chr1.3:61543098-61543117 | None:intergenic | 25.0% |
| ! | GATCTAATATGCATATGAAA+TGG | - | chr1.3:61540639-61540658 | None:intergenic | 25.0% |
| ! | GGATCACTTTATATAGATAA+AGG | - | chr1.3:61539608-61539627 | None:intergenic | 25.0% |
| ! | GTAATATTTCATTCTTCTTG+TGG | + | chr1.3:61539962-61539981 | MS.gene20862:intron | 25.0% |
| ! | GTGTGAAATTACTCAAATAT+TGG | - | chr1.3:61542904-61542923 | None:intergenic | 25.0% |
| ! | TAAAACCTTAATTACTCTGT+TGG | + | chr1.3:61542181-61542200 | MS.gene20862:intron | 25.0% |
| ! | TAAACACGTATGACATATAT+TGG | - | chr1.3:61542075-61542094 | None:intergenic | 25.0% |
| ! | TAGACCATTTAACATTAAGA+TGG | - | chr1.3:61541119-61541138 | None:intergenic | 25.0% |
| ! | TAGATCAAACTTGATTGTAA+TGG | + | chr1.3:61540653-61540672 | MS.gene20862:intron | 25.0% |
| ! | TTCTTACTAAAAAAACGTCA+AGG | - | chr1.3:61540797-61540816 | None:intergenic | 25.0% |
| ! | TTGAAATTGAAGAAAAGACA+AGG | - | chr1.3:61538430-61538449 | None:intergenic | 25.0% |
| ! | TTGAGACAAATGAATAATCT+GGG | + | chr1.3:61538768-61538787 | MS.gene20862:intron | 25.0% |
| ! | TTGAGTTAAAAGAAAAGGTT+AGG | - | chr1.3:61538480-61538499 | None:intergenic | 25.0% |
| ! | TTGATATATGTGTTCTTCTA+GGG | + | chr1.3:61539239-61539258 | MS.gene20862:intron | 25.0% |
| ! | TTTGAACACCTATACAATAA+GGG | + | chr1.3:61543557-61543576 | MS.gene20862:intron | 25.0% |
| ! | TTTGATCAACTAAAAAACGA+CGG | - | chr1.3:61539568-61539587 | None:intergenic | 25.0% |
| ! | TTTGTGTGTACATGAAATTT+AGG | - | chr1.3:61540049-61540068 | None:intergenic | 25.0% |
| !! | CCTTTTTAAATTTTGCTAGT+AGG | + | chr1.3:61538644-61538663 | MS.gene20862:intron | 25.0% |
| !! | TTAGTCAATCTGTTAATTTG+AGG | - | chr1.3:61542731-61542750 | None:intergenic | 25.0% |
| !! | TTTTGAACACCTATACAATA+AGG | + | chr1.3:61543556-61543575 | MS.gene20862:intron | 25.0% |
| !!! | AAACACTTTTTGATTGAGTT+TGG | - | chr1.3:61540867-61540886 | None:intergenic | 25.0% |
| !!! | AAGTTTTTTATGTTACCGAT+TGG | - | chr1.3:61541240-61541259 | None:intergenic | 25.0% |
| !!! | ATGTAAGGATTTTTTACTCT+TGG | + | chr1.3:61539373-61539392 | MS.gene20862:intron | 25.0% |
| !!! | CTTTCTTTGTTTTTGTTCTT+AGG | + | chr1.3:61539867-61539886 | MS.gene20862:intron | 25.0% |
| !!! | GTTTACTTGTTTCTTTGTTT+TGG | + | chr1.3:61538596-61538615 | MS.gene20862:intron | 25.0% |
| !!! | TCAATCAAAAAGTGTTTATG+TGG | + | chr1.3:61540870-61540889 | MS.gene20862:intron | 25.0% |
| !!! | TTTCTTTGTTTTGGGTTATT+AGG | + | chr1.3:61538605-61538624 | MS.gene20862:intron | 25.0% |
| !!! | TTTGTTTTTGTTCTTAGGTA+TGG | + | chr1.3:61539872-61539891 | MS.gene20862:intron | 25.0% |
| !!! | TTTTTTTCCTTCCAATTTGT+GGG | + | chr1.3:61538554-61538573 | MS.gene20862:intron | 25.0% |
| !!! | TTTTTTTTCCTTCCAATTTG+TGG | + | chr1.3:61538553-61538572 | MS.gene20862:intron | 25.0% |
| AAAAAGCTTAAGAGCTTCTT+AGG | + | chr1.3:61541966-61541985 | MS.gene20862:intron | 30.0% | |
| AAAACTCAATACCCACAAAT+TGG | - | chr1.3:61538568-61538587 | None:intergenic | 30.0% | |
| AAACCATAATTGTCAGCTAA+GGG | + | chr1.3:61540564-61540583 | MS.gene20862:intron | 30.0% | |
| AAAGGTTAGGAATAAGTTCA+AGG | - | chr1.3:61538467-61538486 | None:intergenic | 30.0% | |
| AAATAGAACAGGTATAGGAA+AGG | - | chr1.3:61543473-61543492 | None:intergenic | 30.0% | |
| AAGGTTAGGAATAAGTTCAA+GGG | - | chr1.3:61538466-61538485 | None:intergenic | 30.0% | |
| AAGTTCATTCCCTCTTTAAA+TGG | + | chr1.3:61542579-61542598 | MS.gene20862:intron | 30.0% | |
| ACAAGCAAAAATCTACCTTA+TGG | - | chr1.3:61539179-61539198 | None:intergenic | 30.0% | |
| ACAGATCAATATGTAAGTAC+AGG | - | chr1.3:61542998-61543017 | None:intergenic | 30.0% | |
| ACTAGAGCTAATTAATCACT+TGG | - | chr1.3:61538840-61538859 | None:intergenic | 30.0% | |
| AGAAAATTAAAGGCTATCAC+AGG | + | chr1.3:61543358-61543377 | MS.gene20862:intron | 30.0% | |
| AGAGTATGGAACAATATTGT+GGG | - | chr1.3:61543435-61543454 | None:intergenic | 30.0% | |
| AGGTATAGGAAAGGAAAAAT+AGG | - | chr1.3:61543464-61543483 | None:intergenic | 30.0% | |
| ATACAGTCATTGCAAGTTAA+AGG | - | chr1.3:61543075-61543094 | None:intergenic | 30.0% | |
| ATATGAAATGGACCAATTAG+TGG | - | chr1.3:61540627-61540646 | None:intergenic | 30.0% | |
| ATGGAAAATTATCTGCATTG+GGG | - | chr1.3:61542667-61542686 | None:intergenic | 30.0% | |
| ATTTAGAGAATAATCCGTTG+TGG | + | chr1.3:61539460-61539479 | MS.gene20862:intron | 30.0% | |
| CACACTGAAAACTAATTGAT+AGG | + | chr1.3:61542919-61542938 | MS.gene20862:intron | 30.0% | |
| CCATTTAACATTAAGATGGT+AGG | - | chr1.3:61541115-61541134 | None:intergenic | 30.0% | |
| CCTACCATCTTAATGTTAAA+TGG | + | chr1.3:61541112-61541131 | MS.gene20862:intron | 30.0% | |
| CTTGAGACAAATGAATAATC+TGG | + | chr1.3:61538767-61538786 | MS.gene20862:intron | 30.0% | |
| CTTGATATATGTGTTCTTCT+AGG | + | chr1.3:61539238-61539257 | MS.gene20862:intron | 30.0% | |
| GATGAAAATACTTAACCAAG+AGG | - | chr1.3:61542402-61542421 | None:intergenic | 30.0% | |
| GATGATATCCCTTATTGTAT+AGG | - | chr1.3:61543568-61543587 | None:intergenic | 30.0% | |
| GATGGAAAATTATCTGCATT+GGG | - | chr1.3:61542668-61542687 | None:intergenic | 30.0% | |
| GTGGATGTTTAATGTTATGT+TGG | + | chr1.3:61540889-61540908 | MS.gene20862:intron | 30.0% | |
| GTGTTCAGCATATTTAACAA+AGG | - | chr1.3:61541997-61542016 | None:intergenic | 30.0% | |
| GTTAAAGGAATCATTACCTT+TGG | - | chr1.3:61543060-61543079 | None:intergenic | 30.0% | |
| GTTCAAAAGTTCTTGGTTAA+GGG | - | chr1.3:61541946-61541965 | None:intergenic | 30.0% | |
| TAAACCATAATTGTCAGCTA+AGG | + | chr1.3:61540563-61540582 | MS.gene20862:intron | 30.0% | |
| TACGCTGATCTAATAGTTTA+CGG | + | chr1.3:61542335-61542354 | MS.gene20862:intron | 30.0% | |
| TCTAGCAATAACACTTCATT+TGG | - | chr1.3:61540502-61540521 | None:intergenic | 30.0% | |
| TCTTATCTACTATGTTGAAC+AGG | + | chr1.3:61539690-61539709 | MS.gene20862:intron | 30.0% | |
| TGAATCATTATCCTTGAGTT+TGG | - | chr1.3:61543203-61543222 | None:intergenic | 30.0% | |
| TGATGGAAAATTATCTGCAT+TGG | - | chr1.3:61542669-61542688 | None:intergenic | 30.0% | |
| TGGCAATATTTGATACAATG+AGG | + | chr1.3:61539892-61539911 | MS.gene20862:CDS | 30.0% | |
| TGGGGAGTTTAATATTATCA+TGG | - | chr1.3:61543416-61543435 | None:intergenic | 30.0% | |
| TGTTCAAAAGTTCTTGGTTA+AGG | - | chr1.3:61541947-61541966 | None:intergenic | 30.0% | |
| TTAACACATCCATCAGATAT+TGG | + | chr1.3:61542704-61542723 | MS.gene20862:intron | 30.0% | |
| TTATGATTCATAATCCTCTC+AGG | + | chr1.3:61543659-61543678 | MS.gene20862:intron | 30.0% | |
| TTGCACTCATGAAAAAATCA+CGG | - | chr1.3:61543776-61543795 | None:intergenic | 30.0% | |
| TTTAAAGAGGGAATGAACTT+AGG | - | chr1.3:61542579-61542598 | None:intergenic | 30.0% | |
| ! | AAAGTTGACTTATAACACTC+TGG | - | chr1.3:61539347-61539366 | None:intergenic | 30.0% |
| ! | AAATTTTGCTAGTAGGGTTT+GGG | + | chr1.3:61538651-61538670 | MS.gene20862:intron | 30.0% |
| ! | AAGAGTATGGAACAATATTG+TGG | - | chr1.3:61543436-61543455 | None:intergenic | 30.0% |
| ! | ATTTTTCCCTTTTGCAAAAG+TGG | - | chr1.3:61543120-61543139 | None:intergenic | 30.0% |
| ! | GCTTTTTGTTCAAAAGTTCT+TGG | - | chr1.3:61541953-61541972 | None:intergenic | 30.0% |
| ! | GTCAACTTTTCCAATATGTA+AGG | + | chr1.3:61539358-61539377 | MS.gene20862:intron | 30.0% |
| ! | GTTTGGTGAAATTAGGATAA+TGG | - | chr1.3:61540850-61540869 | None:intergenic | 30.0% |
| ! | TAAATTTTGCTAGTAGGGTT+TGG | + | chr1.3:61538650-61538669 | MS.gene20862:intron | 30.0% |
| ! | TGATTGAGTTTGGTGAAATT+AGG | - | chr1.3:61540857-61540876 | None:intergenic | 30.0% |
| ! | TGTGTATGGTGATCAATTTT+GGG | + | chr1.3:61539120-61539139 | MS.gene20862:CDS | 30.0% |
| ! | TTTGATGTCATAAGCACTTT+TGG | + | chr1.3:61541088-61541107 | MS.gene20862:intron | 30.0% |
| !! | CAAACACATGCATTTTGATA+TGG | + | chr1.3:61539650-61539669 | MS.gene20862:intron | 30.0% |
| !! | GTGATTAATTAGCTCTAGTT+AGG | + | chr1.3:61538841-61538860 | MS.gene20862:intron | 30.0% |
| !! | TAAGCACTTTTTAACGAAGT+TGG | + | chr1.3:61541139-61541158 | MS.gene20862:intron | 30.0% |
| !!! | AGTTTTGAGAGCAATGAATT+TGG | - | chr1.3:61540920-61540939 | None:intergenic | 30.0% |
| !!! | ATATAGCTGAAGTGCTATTT+TGG | - | chr1.3:61542810-61542829 | None:intergenic | 30.0% |
| !!! | TTTTGGCTTTAGTTGGTTTT+TGG | + | chr1.3:61543514-61543533 | MS.gene20862:intron | 30.0% |
| !!! | TTTTTGTTTTGCTGAGTTCT+AGG | + | chr1.3:61540081-61540100 | MS.gene20862:intron | 30.0% |
| AAAGAATATGGACTCATCGA+TGG | + | chr1.3:61543804-61543823 | MS.gene20862:CDS | 35.0% | |
| AAATGAAATGCTGCATCACA+AGG | + | chr1.3:61543683-61543702 | MS.gene20862:CDS | 35.0% | |
| AACGAAGTTGGCTGAAAAAA+TGG | + | chr1.3:61541151-61541170 | MS.gene20862:intron | 35.0% | |
| ACCACTCACTATCAGTAAAA+GGG | + | chr1.3:61540012-61540031 | MS.gene20862:intron | 35.0% | |
| ACCAGAAAGTAAGTAAAGTC+TGG | - | chr1.3:61538919-61538938 | None:intergenic | 35.0% | |
| ACTCAGAGTGCACTATATTT+AGG | + | chr1.3:61541851-61541870 | MS.gene20862:intron | 35.0% | |
| ACTGAGAAGAACTAGGTTAA+CGG | - | chr1.3:61542118-61542137 | None:intergenic | 35.0% | |
| AGCACTTCAGCTATATTTGA+GGG | + | chr1.3:61542814-61542833 | MS.gene20862:intron | 35.0% | |
| ATAATGATTCATCAACCGCT+TGG | + | chr1.3:61543212-61543231 | MS.gene20862:CDS | 35.0% | |
| ATACTTGGTCAGAAAGGTAA+AGG | - | chr1.3:61542544-61542563 | None:intergenic | 35.0% | |
| ATAGAATATTCTACGGGAAG+GGG | - | chr1.3:61538987-61539006 | None:intergenic | 35.0% | |
| ATCATATAACCACACGTGAT+TGG | - | chr1.3:61540399-61540418 | None:intergenic | 35.0% | |
| ATCGATGAGTCCATATTCTT+TGG | - | chr1.3:61543805-61543824 | None:intergenic | 35.0% | |
| ATGCTCAATATAGGGTATGT+TGG | - | chr1.3:61541391-61541410 | None:intergenic | 35.0% | |
| ATGGTTTAGGGATAACTCAT+TGG | - | chr1.3:61543397-61543416 | None:intergenic | 35.0% | |
| CAAGCAAAAAATAGGAGAAC+TGG | - | chr1.3:61542235-61542254 | None:intergenic | 35.0% | |
| CATAGAATATTCTACGGGAA+GGG | - | chr1.3:61538988-61539007 | None:intergenic | 35.0% | |
| CTCAGACAATAAGCTATGAT+TGG | - | chr1.3:61542632-61542651 | None:intergenic | 35.0% | |
| GAATTGTCTAACTCCATACT+TGG | - | chr1.3:61542559-61542578 | None:intergenic | 35.0% | |
| GACAAATGAATAATCTGGGT+TGG | + | chr1.3:61538772-61538791 | MS.gene20862:intron | 35.0% | |
| GACAATAAGCTATGATTGGT+CGG | - | chr1.3:61542628-61542647 | None:intergenic | 35.0% | |
| GAGAAGCTGAATTAACTAGT+TGG | - | chr1.3:61542311-61542330 | None:intergenic | 35.0% | |
| GAGTATGGAACAATATTGTG+GGG | - | chr1.3:61543434-61543453 | None:intergenic | 35.0% | |
| GATCAACAGCATCAAGATAA+AGG | - | chr1.3:61539531-61539550 | None:intergenic | 35.0% | |
| GCAAAAGAAGCCAAAGAATA+TGG | + | chr1.3:61543792-61543811 | MS.gene20862:CDS | 35.0% | |
| GCAAACTGACATAGATATTC+AGG | + | chr1.3:61543250-61543269 | MS.gene20862:CDS | 35.0% | |
| GGAAACCAACAGAGTAATTA+AGG | - | chr1.3:61542189-61542208 | None:intergenic | 35.0% | |
| GGATGTGTTAAGAGTTAAGT+TGG | - | chr1.3:61542695-61542714 | None:intergenic | 35.0% | |
| GTCATGTATGTAAATTCTCC+CGG | + | chr1.3:61539718-61539737 | MS.gene20862:CDS | 35.0% | |
| TAAACTTTGCCCAGTTTGAT+AGG | - | chr1.3:61543730-61543749 | None:intergenic | 35.0% | |
| TACCACTCACTATCAGTAAA+AGG | + | chr1.3:61540011-61540030 | MS.gene20862:intron | 35.0% | |
| TAGCACTTCAGCTATATTTG+AGG | + | chr1.3:61542813-61542832 | MS.gene20862:intron | 35.0% | |
| TCCTTCAAAAATGACAGAGT+CGG | - | chr1.3:61543165-61543184 | None:intergenic | 35.0% | |
| TGCACTATATTTAGGCTATC+TGG | + | chr1.3:61541859-61541878 | MS.gene20862:intron | 35.0% | |
| TGCTGAACACAAGATATGTA+AGG | + | chr1.3:61541809-61541828 | MS.gene20862:intron | 35.0% | |
| TGGAAAATTATCTGCATTGG+GGG | - | chr1.3:61542666-61542685 | None:intergenic | 35.0% | |
| TGTCATACGTGTTTATGTTC+TGG | + | chr1.3:61542080-61542099 | MS.gene20862:intron | 35.0% | |
| TGTGCATAGGTAGGAAAATA+AGG | - | chr1.3:61539288-61539307 | None:intergenic | 35.0% | |
| TTAAAACTTACGAGCCTCTT+AGG | + | chr1.3:61541768-61541787 | MS.gene20862:intron | 35.0% | |
| TTAACTAGTTGGACAACACT+TGG | - | chr1.3:61542300-61542319 | None:intergenic | 35.0% | |
| TTCATTCCCTCTTTAAATGG+TGG | + | chr1.3:61542582-61542601 | MS.gene20862:intron | 35.0% | |
| TTCCAACCACCATTTAAAGA+GGG | - | chr1.3:61542591-61542610 | None:intergenic | 35.0% | |
| TTTACCTTTCTGACCAAGTA+TGG | + | chr1.3:61542543-61542562 | MS.gene20862:intron | 35.0% | |
| TTTAGGCCAAATACCATTTG+CGG | + | chr1.3:61540739-61540758 | MS.gene20862:intron | 35.0% | |
| TTTCATAGAATACTAGCGAC+AGG | - | chr1.3:61540257-61540276 | None:intergenic | 35.0% | |
| ! | ACAATAAGCTATGATTGGTC+GGG | - | chr1.3:61542627-61542646 | None:intergenic | 35.0% |
| ! | ATATATGTGTTCTTCTAGGG+AGG | + | chr1.3:61539242-61539261 | MS.gene20862:intron | 35.0% |
| ! | ATTTGAGGTCCAATATCTGA+TGG | - | chr1.3:61542716-61542735 | None:intergenic | 35.0% |
| ! | CAGCATATTTTGCAAAGGTA+TGG | - | chr1.3:61541794-61541813 | None:intergenic | 35.0% |
| ! | CTAAAGCCAAAAGTATGACA+TGG | - | chr1.3:61543506-61543525 | None:intergenic | 35.0% |
| ! | CTGTGTATGGTGATCAATTT+TGG | + | chr1.3:61539119-61539138 | MS.gene20862:CDS | 35.0% |
| ! | GAGAATTTGAGTTCAAATCG+TGG | + | chr1.3:61538877-61538896 | MS.gene20862:intron | 35.0% |
| ! | GTGTATGGTGATCAATTTTG+GGG | + | chr1.3:61539121-61539140 | MS.gene20862:CDS | 35.0% |
| ! | GTGTTCAGCATATTTTGCAA+AGG | - | chr1.3:61541799-61541818 | None:intergenic | 35.0% |
| ! | GTGTTTATGTTCTGGATTTG+TGG | + | chr1.3:61542088-61542107 | MS.gene20862:intron | 35.0% |
| ! | TATTTTCCTACCTATGCACA+AGG | + | chr1.3:61539288-61539307 | MS.gene20862:CDS | 35.0% |
| ! | TCCATTCCATGTCATACTTT+TGG | + | chr1.3:61543497-61543516 | MS.gene20862:intron | 35.0% |
| ! | TGACATCTCTAGAAATGCAA+AGG | - | chr1.3:61539629-61539648 | None:intergenic | 35.0% |
| !! | AAGAGTTAAGTTGGACATGA+TGG | - | chr1.3:61542686-61542705 | None:intergenic | 35.0% |
| !! | ATTTAGGCTATCTGGAGTTT+TGG | + | chr1.3:61541867-61541886 | MS.gene20862:intron | 35.0% |
| !! | TTAGGTCCACTTTTGCAAAA+GGG | + | chr1.3:61543111-61543130 | MS.gene20862:intron | 35.0% |
| !! | TTTAGGTCCACTTTTGCAAA+AGG | + | chr1.3:61543110-61543129 | MS.gene20862:intron | 35.0% |
| !! | TTTTAGTTGATCAAAGCTCG+TGG | + | chr1.3:61539573-61539592 | MS.gene20862:intron | 35.0% |
| !!! | ATCTGGAGTTTTGGACTAAA+TGG | + | chr1.3:61541876-61541895 | MS.gene20862:intron | 35.0% |
| !!! | GCTTTAGTTGGTTTTTGGAT+TGG | + | chr1.3:61543519-61543538 | MS.gene20862:intron | 35.0% |
| !!! | GTCATACTTTTGGCTTTAGT+TGG | + | chr1.3:61543507-61543526 | MS.gene20862:intron | 35.0% |
| AAAAATCACGGTCTGTATCC+TGG | - | chr1.3:61543764-61543783 | None:intergenic | 40.0% | |
| AAAGGACCGCAAATGGTATT+TGG | - | chr1.3:61540748-61540767 | None:intergenic | 40.0% | |
| AACTCAGCTCTCAATTGAGA+AGG | - | chr1.3:61542481-61542500 | None:intergenic | 40.0% | |
| AACTCCATACTTGGTCAGAA+AGG | - | chr1.3:61542550-61542569 | None:intergenic | 40.0% | |
| ACCAAAACATCTCTGAGCTT+TGG | + | chr1.3:61542447-61542466 | MS.gene20862:intron | 40.0% | |
| AGGTTTGTGCCATCAAATGA+GGG | - | chr1.3:61543302-61543321 | None:intergenic | 40.0% | |
| ATCACAAGGCAAACCTGAAT+GGG | + | chr1.3:61543697-61543716 | MS.gene20862:CDS | 40.0% | |
| ATCACCATACACAGCTTTCA+CGG | - | chr1.3:61539113-61539132 | None:intergenic | 40.0% | |
| ATGAAACCCCGACATAGATA+GGG | + | chr1.3:61540271-61540290 | MS.gene20862:intron | 40.0% | |
| ATGTATGTAAATTCTCCCGG+AGG | + | chr1.3:61539721-61539740 | MS.gene20862:CDS | 40.0% | |
| ATTGGAAATAGAGTGCACTC+TGG | - | chr1.3:61542057-61542076 | None:intergenic | 40.0% | |
| ATTTCCTGCAAATCACAGCA+TGG | - | chr1.3:61539048-61539067 | None:intergenic | 40.0% | |
| CATATAACTTAAAGGACCGC+AGG | + | chr1.3:61541276-61541295 | MS.gene20862:intron | 40.0% | |
| CCAAAACATCTCTGAGCTTT+GGG | + | chr1.3:61542448-61542467 | MS.gene20862:intron | 40.0% | |
| CCAAACTTTACGCCACTAAT+TGG | + | chr1.3:61540612-61540631 | MS.gene20862:intron | 40.0% | |
| CCAATTAGTGGCGTAAAGTT+TGG | - | chr1.3:61540615-61540634 | None:intergenic | 40.0% | |
| CCTTCAAAAATGACAGAGTC+GGG | - | chr1.3:61543164-61543183 | None:intergenic | 40.0% | |
| CTAACCAATCATGTCTTCCT+TGG | - | chr1.3:61543597-61543616 | None:intergenic | 40.0% | |
| CTCAATACCCACAAATTGGA+AGG | - | chr1.3:61538564-61538583 | None:intergenic | 40.0% | |
| CTCTCAAAACTAGAGCTCAA+AGG | + | chr1.3:61540929-61540948 | MS.gene20862:intron | 40.0% | |
| CTCTGAGTGACTAATGCAAA+TGG | - | chr1.3:61541839-61541858 | None:intergenic | 40.0% | |
| CTCTTTAAATGGTGGTTGGA+AGG | + | chr1.3:61542590-61542609 | MS.gene20862:intron | 40.0% | |
| CTTAACCACTGAGAAGAACT+AGG | - | chr1.3:61542125-61542144 | None:intergenic | 40.0% | |
| CTTCCAACCACCATTTAAAG+AGG | - | chr1.3:61542592-61542611 | None:intergenic | 40.0% | |
| GATCTGTTCATGAGCAGTAT+GGG | + | chr1.3:61543011-61543030 | MS.gene20862:intron | 40.0% | |
| GCATAGAATATTCTACGGGA+AGG | - | chr1.3:61538989-61539008 | None:intergenic | 40.0% | |
| GCCAGACTTTACTTACTTTC+TGG | + | chr1.3:61538915-61538934 | MS.gene20862:intron | 40.0% | |
| GGAAAATTATCTGCATTGGG+GGG | - | chr1.3:61542665-61542684 | None:intergenic | 40.0% | |
| GGTATCTGTCCTATCAAACT+GGG | + | chr1.3:61543718-61543737 | MS.gene20862:CDS | 40.0% | |
| GTAACTTAAAGGACCGCAAA+TGG | - | chr1.3:61540755-61540774 | None:intergenic | 40.0% | |
| GTAGGAAAATAAGGCGAAGA+CGG | - | chr1.3:61539279-61539298 | None:intergenic | 40.0% | |
| TAGAATATTCTACGGGAAGG+GGG | - | chr1.3:61538986-61539005 | None:intergenic | 40.0% | |
| TAGAGAATAATCCGTTGTGG+TGG | + | chr1.3:61539463-61539482 | MS.gene20862:intron | 40.0% | |
| TATGAAACCCCGACATAGAT+AGG | + | chr1.3:61540270-61540289 | MS.gene20862:intron | 40.0% | |
| TCTCAAGTCTCAACAAATCC+TGG | - | chr1.3:61540354-61540373 | None:intergenic | 40.0% | |
| TGAAAGATCGGGTCTTCATA+TGG | + | chr1.3:61541477-61541496 | MS.gene20862:intron | 40.0% | |
| TGAATACATACCACGTGTGA+GGG | + | chr1.3:61540455-61540474 | MS.gene20862:intron | 40.0% | |
| TGAGTGACTAATGCAAATGG+TGG | - | chr1.3:61541836-61541855 | None:intergenic | 40.0% | |
| TGATCTGTTCATGAGCAGTA+TGG | + | chr1.3:61543010-61543029 | MS.gene20862:intron | 40.0% | |
| TGATGCTGTTGATCCAAACA+AGG | + | chr1.3:61539537-61539556 | MS.gene20862:CDS | 40.0% | |
| TTACGGAAGTTGTGCTAACA+TGG | + | chr1.3:61542352-61542371 | MS.gene20862:intron | 40.0% | |
| TTAGTGGCGTAAAGTTTGGT+TGG | - | chr1.3:61540611-61540630 | None:intergenic | 40.0% | |
| TTCCCTCTTTAAATGGTGGT+TGG | + | chr1.3:61542586-61542605 | MS.gene20862:intron | 40.0% | |
| TTGAGACTTGAGATCATGAG+AGG | + | chr1.3:61540361-61540380 | MS.gene20862:intron | 40.0% | |
| TTGAGTGTAAGAGAGGAAGA+GGG | - | chr1.3:61538308-61538327 | None:intergenic | 40.0% | |
| TTGGAAATAGAGTGCACTCT+GGG | - | chr1.3:61542056-61542075 | None:intergenic | 40.0% | |
| TTTGTATCTTGACACGTCAC+TGG | + | chr1.3:61542872-61542891 | MS.gene20862:intron | 40.0% | |
| ! | AAAACCATGCTGTGATTTGC+AGG | + | chr1.3:61539041-61539060 | MS.gene20862:intron | 40.0% |
| ! | CAAGGAAGACATGATTGGTT+AGG | + | chr1.3:61543595-61543614 | MS.gene20862:intron | 40.0% |
| ! | CTGTGATTTGCAGGAAATTG+AGG | + | chr1.3:61539050-61539069 | MS.gene20862:intron | 40.0% |
| ! | GCCAAAAGTATGACATGGAA+TGG | - | chr1.3:61543501-61543520 | None:intergenic | 40.0% |
| ! | GGAATCATTACCTTTGGTTC+CGG | - | chr1.3:61543054-61543073 | None:intergenic | 40.0% |
| ! | GTTAACCTAGTTCTTCTCAG+TGG | + | chr1.3:61542117-61542136 | MS.gene20862:intron | 40.0% |
| ! | TGTTCTTCTAGGGAGGATTT+GGG | + | chr1.3:61539249-61539268 | MS.gene20862:intron | 40.0% |
| !! | ACCCTTTTACTGATAGTGAG+TGG | - | chr1.3:61540016-61540035 | None:intergenic | 40.0% |
| !! | TGGTGTTGCTGCATATGAAA+CGG | - | chr1.3:61540591-61540610 | None:intergenic | 40.0% |
| AACGACGGACAAACCTTGTT+TGG | - | chr1.3:61539553-61539572 | None:intergenic | 45.0% | |
| AATAGGCAGTGTGCAAGTGA+GGG | - | chr1.3:61540131-61540150 | None:intergenic | 45.0% | |
| AATAGGCCAAATACCTCCTG+CGG | - | chr1.3:61541295-61541314 | None:intergenic | 45.0% | |
| AGCTGAGTTCGACATTTCTC+CGG | + | chr1.3:61542492-61542511 | MS.gene20862:intron | 45.0% | |
| AGGAGAGTTGAGTGTAAGAG+AGG | - | chr1.3:61538315-61538334 | None:intergenic | 45.0% | |
| ATAACTTAAAGGACCGCAGG+AGG | + | chr1.3:61541279-61541298 | MS.gene20862:intron | 45.0% | |
| ATCATGTCTTCCTTGGCACA+TGG | - | chr1.3:61543590-61543609 | None:intergenic | 45.0% | |
| ATGATTCATCAACCGCTTGG+TGG | + | chr1.3:61543215-61543234 | MS.gene20862:CDS | 45.0% | |
| CAGCATTTCATTTGCCTGAG+AGG | - | chr1.3:61543676-61543695 | None:intergenic | 45.0% | |
| CATCACAAGGCAAACCTGAA+TGG | + | chr1.3:61543696-61543715 | MS.gene20862:CDS | 45.0% | |
| CTACCTATGCACAAGGACAA+GGG | + | chr1.3:61539295-61539314 | MS.gene20862:CDS | 45.0% | |
| CTGAATACATACCACGTGTG+AGG | + | chr1.3:61540454-61540473 | MS.gene20862:intron | 45.0% | |
| CTGCAGAAGAGGGTAAAGAT+CGG | + | chr1.3:61543868-61543887 | MS.gene20862:CDS | 45.0% | |
| CTGTATCCCCCTATCTATGT+CGG | - | chr1.3:61540282-61540301 | None:intergenic | 45.0% | |
| GAGGTTTGTGCCATCAAATG+AGG | - | chr1.3:61543303-61543322 | None:intergenic | 45.0% | |
| GATAGGACAGATACCCATTC+AGG | - | chr1.3:61543713-61543732 | None:intergenic | 45.0% | |
| GGACCCTTAGCTGACAATTA+TGG | - | chr1.3:61540570-61540589 | None:intergenic | 45.0% | |
| GGGTATCTGTCCTATCAAAC+TGG | + | chr1.3:61543717-61543736 | MS.gene20862:CDS | 45.0% | |
| GGTTGAACTCCAAATTACCG+AGG | + | chr1.3:61538936-61538955 | MS.gene20862:intron | 45.0% | |
| GGTTTGTGCCATCAAATGAG+GGG | - | chr1.3:61543301-61543320 | None:intergenic | 45.0% | |
| GTGAGAGTGAGAAGAAGAAC+CGG | - | chr1.3:61538354-61538373 | None:intergenic | 45.0% | |
| GTTGAGTGTAAGAGAGGAAG+AGG | - | chr1.3:61538309-61538328 | None:intergenic | 45.0% | |
| GTTTCAGCTTGCCAAACTCA+AGG | + | chr1.3:61543189-61543208 | MS.gene20862:CDS | 45.0% | |
| GTTTGTGCCATCAAATGAGG+GGG | - | chr1.3:61543300-61543319 | None:intergenic | 45.0% | |
| TAATAGGCAGTGTGCAAGTG+AGG | - | chr1.3:61540132-61540151 | None:intergenic | 45.0% | |
| TAGTCTCAACCAATCACGTG+TGG | + | chr1.3:61540387-61540406 | MS.gene20862:intron | 45.0% | |
| TCTCAAAGCTCTTCAGCCTT+TGG | + | chr1.3:61543842-61543861 | MS.gene20862:CDS | 45.0% | |
| TGAAACCCCGACATAGATAG+GGG | + | chr1.3:61540272-61540291 | MS.gene20862:intron | 45.0% | |
| TGAGTGTAAGAGAGGAAGAG+GGG | - | chr1.3:61538307-61538326 | None:intergenic | 45.0% | |
| TGCAGAAGAGGGTAAAGATC+GGG | + | chr1.3:61543869-61543888 | MS.gene20862:CDS | 45.0% | |
| TGGAGCAGTTGACGATGATA+TGG | + | chr1.3:61539483-61539502 | MS.gene20862:CDS | 45.0% | |
| TGTATCCCCCTATCTATGTC+GGG | - | chr1.3:61540281-61540300 | None:intergenic | 45.0% | |
| TGTGCCAAGGAAGACATGAT+TGG | + | chr1.3:61543590-61543609 | MS.gene20862:intron | 45.0% | |
| TTTGTGCCATCAAATGAGGG+GGG | - | chr1.3:61543299-61543318 | None:intergenic | 45.0% | |
| ! | AGCTTTCACGGCAGATTTTC+GGG | - | chr1.3:61539101-61539120 | None:intergenic | 45.0% |
| ! | ATAAGCTATGATTGGTCGGG+AGG | - | chr1.3:61542624-61542643 | None:intergenic | 45.0% |
| ! | CAGCTTTCACGGCAGATTTT+CGG | - | chr1.3:61539102-61539121 | None:intergenic | 45.0% |
| ! | CCCAAAGCTCAGAGATGTTT+TGG | - | chr1.3:61542451-61542470 | None:intergenic | 45.0% |
| ! | GACAAAAGGGGTGTGTATGA+GGG | - | chr1.3:61540221-61540240 | None:intergenic | 45.0% |
| ! | GAGCTCAAAGGTGCGTTATT+CGG | + | chr1.3:61540941-61540960 | MS.gene20862:intron | 45.0% |
| ! | GTCAGGGTATTTGGTCCATA+AGG | + | chr1.3:61539161-61539180 | MS.gene20862:CDS | 45.0% |
| ! | GTGTTCTTCTAGGGAGGATT+TGG | + | chr1.3:61539248-61539267 | MS.gene20862:intron | 45.0% |
| ! | TGACAAAAGGGGTGTGTATG+AGG | - | chr1.3:61540222-61540241 | None:intergenic | 45.0% |
| ! | TTGCAAAGGTATGGCCTAAG+AGG | - | chr1.3:61541785-61541804 | None:intergenic | 45.0% |
| !! | AAAGGCTGAAGAGCTTTGAG+AGG | - | chr1.3:61543843-61543862 | None:intergenic | 45.0% |
| !!! | CCCGACTCTGTCATTTTTGA+AGG | + | chr1.3:61543161-61543180 | MS.gene20862:intron | 45.0% |
| !! | AAATATTTATATGTAAAATT+AGG | + | chr1.3:61541016-61541035 | MS.gene20862:intron | 5.0% |
| AATGAGGGGGGGAAGAAAAC+AGG | - | chr1.3:61543287-61543306 | None:intergenic | 50.0% | |
| ACACAGACAGTGGACACATC+AGG | - | chr1.3:61539927-61539946 | None:intergenic | 50.0% | |
| ACCAGCTGTAACTGATCCTC+CGG | - | chr1.3:61539740-61539759 | None:intergenic | 50.0% | |
| AGAGTGAGAAGAAGAACCGG+TGG | - | chr1.3:61538351-61538370 | None:intergenic | 50.0% | |
| ATAGTACCATCTCCCTGCTC+CGG | - | chr1.3:61542514-61542533 | None:intergenic | 50.0% | |
| ATGAGGGGGGGAAGAAAACA+GGG | - | chr1.3:61543286-61543305 | None:intergenic | 50.0% | |
| ATTACCGAGGTTTCCTCCCT+CGG | + | chr1.3:61538949-61538968 | MS.gene20862:intron | 50.0% | |
| CCTACCTATGCACAAGGACA+AGG | + | chr1.3:61539294-61539313 | MS.gene20862:CDS | 50.0% | |
| CCTCCTTGAAAACCACCAAG+CGG | - | chr1.3:61543230-61543249 | None:intergenic | 50.0% | |
| CCTTCGAACTCTTTGCTCTC+CGG | + | chr1.3:61538386-61538405 | MS.gene20862:CDS | 50.0% | |
| CCTTGTCCTTGTGCATAGGT+AGG | - | chr1.3:61539297-61539316 | None:intergenic | 50.0% | |
| CGACATAGATAGGGGGATAC+AGG | + | chr1.3:61540280-61540299 | MS.gene20862:intron | 50.0% | |
| CTAACATGGCATCCGATGCA+TGG | + | chr1.3:61542366-61542385 | MS.gene20862:intron | 50.0% | |
| CTGAACACAAGCGCTATGAG+AGG | + | chr1.3:61542009-61542028 | MS.gene20862:intron | 50.0% | |
| CTTCGAACTCTTTGCTCTCC+GGG | + | chr1.3:61538387-61538406 | MS.gene20862:CDS | 50.0% | |
| GAAACCCCGACATAGATAGG+GGG | + | chr1.3:61540273-61540292 | MS.gene20862:intron | 50.0% | |
| GAGTGTAAGAGAGGAAGAGG+GGG | - | chr1.3:61538306-61538325 | None:intergenic | 50.0% | |
| GATGTGTCCACTGTCTGTGT+TGG | + | chr1.3:61539927-61539946 | MS.gene20862:CDS | 50.0% | |
| GGGAGGAAACCTCGGTAATT+TGG | - | chr1.3:61538948-61538967 | None:intergenic | 50.0% | |
| GGGATATCATCCATGTGCCA+AGG | + | chr1.3:61543577-61543596 | MS.gene20862:intron | 50.0% | |
| GTATCCCCCTATCTATGTCG+GGG | - | chr1.3:61540280-61540299 | None:intergenic | 50.0% | |
| GTCCACTGTCTGTGTTGGAT+TGG | + | chr1.3:61539932-61539951 | MS.gene20862:CDS | 50.0% | |
| TCTGCCGTGAAAGCTGTGTA+TGG | + | chr1.3:61539106-61539125 | MS.gene20862:CDS | 50.0% | |
| TGAGAAGAAGAACCGGTGGT+GGG | - | chr1.3:61538347-61538366 | None:intergenic | 50.0% | |
| TTCGACATTTCTCCGGAGCA+GGG | + | chr1.3:61542499-61542518 | MS.gene20862:intron | 50.0% | |
| TTCTTCCCCCCCTCATTTGA+TGG | + | chr1.3:61543290-61543309 | MS.gene20862:intron | 50.0% | |
| TTGTGCCATCAAATGAGGGG+GGG | - | chr1.3:61543298-61543317 | None:intergenic | 50.0% | |
| ! | CACTGTCTGTGTTGGATTGG+CGG | + | chr1.3:61539935-61539954 | MS.gene20862:CDS | 50.0% |
| ! | GGAGCTTTTCTGCTTAGTGC+CGG | + | chr1.3:61543032-61543051 | MS.gene20862:CDS | 50.0% |
| ! | GGAGTTCACGTCAGGGTATT+TGG | + | chr1.3:61539152-61539171 | MS.gene20862:CDS | 50.0% |
| !! | AAAGGACCGCAGGAGGTATT+TGG | + | chr1.3:61541286-61541305 | MS.gene20862:intron | 50.0% |
| !! | ATCAATTTTGGGGACCCGAG+AGG | + | chr1.3:61539131-61539150 | MS.gene20862:CDS | 50.0% |
| !! | CAACCGCTTGGTGGTTTTCA+AGG | + | chr1.3:61543224-61543243 | MS.gene20862:CDS | 50.0% |
| !! | CGCTTGGTGGTTTTCAAGGA+GGG | + | chr1.3:61543228-61543247 | MS.gene20862:CDS | 50.0% |
| !! | TCTGGGTTTCTAGCTGCGAA+TGG | - | chr1.3:61542039-61542058 | None:intergenic | 50.0% |
| AAACGCTCCTGCACCATTGG+GGG | - | chr1.3:61539324-61539343 | None:intergenic | 55.0% | |
| ACATACCACGTGTGAGGGCA+AGG | + | chr1.3:61540460-61540479 | MS.gene20862:intron | 55.0% | |
| ACCCTGACGTGAACTCCTCT+CGG | - | chr1.3:61539149-61539168 | None:intergenic | 55.0% | |
| ATACCACGTGTGAGGGCAAG+GGG | + | chr1.3:61540462-61540481 | MS.gene20862:intron | 55.0% | |
| ATTTCTCCGGAGCAGGGAGA+TGG | + | chr1.3:61542505-61542524 | MS.gene20862:intron | 55.0% | |
| CATACCACGTGTGAGGGCAA+GGG | + | chr1.3:61540461-61540480 | MS.gene20862:intron | 55.0% | |
| CATGGAGCTGTGTACCCTCT+TGG | + | chr1.3:61542384-61542403 | MS.gene20862:intron | 55.0% | |
| CCAGCTGTAACTGATCCTCC+GGG | - | chr1.3:61539739-61539758 | None:intergenic | 55.0% | |
| CCGGAGAGCAAAGAGTTCGA+AGG | - | chr1.3:61538389-61538408 | None:intergenic | 55.0% | |
| CCTTTGGCAGCTGCAGAAGA+GGG | + | chr1.3:61543858-61543877 | MS.gene20862:CDS | 55.0% | |
| CGCCAATCCAACACAGACAG+TGG | - | chr1.3:61539937-61539956 | None:intergenic | 55.0% | |
| CGTCAACTGCTCCACCACAA+CGG | - | chr1.3:61539477-61539496 | None:intergenic | 55.0% | |
| GAAACGCTCCTGCACCATTG+GGG | - | chr1.3:61539325-61539344 | None:intergenic | 55.0% | |
| GAGAAGAAGAACCGGTGGTG+GGG | - | chr1.3:61538346-61538365 | None:intergenic | 55.0% | |
| GGAAACGCTCCTGCACCATT+GGG | - | chr1.3:61539326-61539345 | None:intergenic | 55.0% | |
| GGGTACACAGCTCCATGCAT+CGG | - | chr1.3:61542381-61542400 | None:intergenic | 55.0% | |
| GTGAGAAGAAGAACCGGTGG+TGG | - | chr1.3:61538348-61538367 | None:intergenic | 55.0% | |
| GTTCGACATTTCTCCGGAGC+AGG | + | chr1.3:61542498-61542517 | MS.gene20862:intron | 55.0% | |
| TGGAAACGCTCCTGCACCAT+TGG | - | chr1.3:61539327-61539346 | None:intergenic | 55.0% | |
| TGGCCCTTGTCCTTGTGCAT+AGG | - | chr1.3:61539301-61539320 | None:intergenic | 55.0% | |
| TTACCGAGGTTTCCTCCCTC+GGG | + | chr1.3:61538950-61538969 | MS.gene20862:intron | 55.0% | |
| ! | AGAAGAAGAACCGGTGGTGG+GGG | - | chr1.3:61538345-61538364 | None:intergenic | 55.0% |
| ! | CTGCTTAGTGCCGGAACCAA+AGG | + | chr1.3:61543041-61543060 | MS.gene20862:CDS | 55.0% |
| !! | CCGCTTGGTGGTTTTCAAGG+AGG | + | chr1.3:61543227-61543246 | MS.gene20862:CDS | 55.0% |
| !! | GGGTTTCTAGCTGCGAATGG+CGG | - | chr1.3:61542036-61542055 | None:intergenic | 55.0% |
| !! | TCTGTGTTGGATTGGCGGCT+AGG | + | chr1.3:61539940-61539959 | MS.gene20862:CDS | 55.0% |
| ACCCGAGAGGAGTTCACGTC+AGG | + | chr1.3:61539144-61539163 | MS.gene20862:CDS | 60.0% | |
| CCCGAGAGGAGTTCACGTCA+GGG | + | chr1.3:61539145-61539164 | MS.gene20862:CDS | 60.0% | |
| CCCGGAGGATCAGTTACAGC+TGG | + | chr1.3:61539736-61539755 | MS.gene20862:CDS | 60.0% | |
| CCCTCTTCTGCAGCTGCCAA+AGG | - | chr1.3:61543861-61543880 | None:intergenic | 60.0% | |
| CCCTGACGTGAACTCCTCTC+GGG | - | chr1.3:61539148-61539167 | None:intergenic | 60.0% | |
| CCTCTTCTTTCCCCCACCAC+CGG | + | chr1.3:61538332-61538351 | MS.gene20862:CDS | 60.0% | |
| GCCTTTGGCAGCTGCAGAAG+AGG | + | chr1.3:61543857-61543876 | MS.gene20862:CDS | 60.0% | |
| TACCACGTGTGAGGGCAAGG+GGG | + | chr1.3:61540463-61540482 | MS.gene20862:intron | 60.0% | |
| TACCGAGGTTTCCTCCCTCG+GGG | + | chr1.3:61538951-61538970 | MS.gene20862:intron | 60.0% | |
| AGGACAAGGGCCACCCCCAA+TGG | + | chr1.3:61539308-61539327 | MS.gene20862:CDS | 65.0% | |
| CTACGGGAAGGGGGTCCTTC+AGG | - | chr1.3:61538977-61538996 | None:intergenic | 65.0% | |
| TTCCCCCTTGCCCTCACACG+TGG | - | chr1.3:61540468-61540487 | None:intergenic | 65.0% | |
| TTTCCTCCCTCGGGGCCTGA+AGG | + | chr1.3:61538959-61538978 | MS.gene20862:intron | 65.0% | |
| !! | CCGGTGGTGGGGGAAAGAAG+AGG | - | chr1.3:61538335-61538354 | None:intergenic | 65.0% |
| AGGGCCACCCCCAATGGTGC+AGG | + | chr1.3:61539314-61539333 | MS.gene20862:CDS | 70.0% | |
| CGCTCCTGCACCATTGGGGG+TGG | - | chr1.3:61539321-61539340 | None:intergenic | 70.0% | |
| GGCCCCGAGGGAGGAAACCT+CGG | - | chr1.3:61538956-61538975 | None:intergenic | 70.0% | |
| AGGGGGTCCTTCAGGCCCCG+AGG | - | chr1.3:61538969-61538988 | None:intergenic | 75.0% | |
| GGGGGTCCTTCAGGCCCCGA+GGG | - | chr1.3:61538968-61538987 | None:intergenic | 75.0% | |
| GGTCCTTCAGGCCCCGAGGG+AGG | - | chr1.3:61538965-61538984 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 61538281 | 61543905 | 61538281 | ID=MS.gene20862 |
| chr1.3 | mRNA | 61538281 | 61543905 | 61538281 | ID=MS.gene20862.t1;Parent=MS.gene20862 |
| chr1.3 | exon | 61538281 | 61538408 | 61538281 | ID=MS.gene20862.t1.exon1;Parent=MS.gene20862.t1 |
| chr1.3 | CDS | 61538281 | 61538408 | 61538281 | ID=cds.MS.gene20862.t1;Parent=MS.gene20862.t1 |
| chr1.3 | exon | 61539063 | 61539182 | 61539063 | ID=MS.gene20862.t1.exon2;Parent=MS.gene20862.t1 |
| chr1.3 | CDS | 61539063 | 61539182 | 61539063 | ID=cds.MS.gene20862.t1;Parent=MS.gene20862.t1 |
| chr1.3 | exon | 61539260 | 61539374 | 61539260 | ID=MS.gene20862.t1.exon3;Parent=MS.gene20862.t1 |
| chr1.3 | CDS | 61539260 | 61539374 | 61539260 | ID=cds.MS.gene20862.t1;Parent=MS.gene20862.t1 |
| chr1.3 | exon | 61539466 | 61539558 | 61539466 | ID=MS.gene20862.t1.exon4;Parent=MS.gene20862.t1 |
| chr1.3 | CDS | 61539466 | 61539558 | 61539466 | ID=cds.MS.gene20862.t1;Parent=MS.gene20862.t1 |
| chr1.3 | exon | 61539712 | 61539757 | 61539712 | ID=MS.gene20862.t1.exon5;Parent=MS.gene20862.t1 |
| chr1.3 | CDS | 61539712 | 61539757 | 61539712 | ID=cds.MS.gene20862.t1;Parent=MS.gene20862.t1 |
| chr1.3 | exon | 61539889 | 61539961 | 61539889 | ID=MS.gene20862.t1.exon6;Parent=MS.gene20862.t1 |
| chr1.3 | CDS | 61539889 | 61539961 | 61539889 | ID=cds.MS.gene20862.t1;Parent=MS.gene20862.t1 |
| chr1.3 | exon | 61543028 | 61543062 | 61543028 | ID=MS.gene20862.t1.exon7;Parent=MS.gene20862.t1 |
| chr1.3 | CDS | 61543028 | 61543062 | 61543028 | ID=cds.MS.gene20862.t1;Parent=MS.gene20862.t1 |
| chr1.3 | exon | 61543183 | 61543271 | 61543183 | ID=MS.gene20862.t1.exon8;Parent=MS.gene20862.t1 |
| chr1.3 | CDS | 61543183 | 61543271 | 61543183 | ID=cds.MS.gene20862.t1;Parent=MS.gene20862.t1 |
| chr1.3 | exon | 61543681 | 61543905 | 61543681 | ID=MS.gene20862.t1.exon9;Parent=MS.gene20862.t1 |
| chr1.3 | CDS | 61543681 | 61543905 | 61543681 | ID=cds.MS.gene20862.t1;Parent=MS.gene20862.t1 |
| Gene Sequence |
| Protein sequence |
