AlfalfaGEDB | MS.gene37562

M. sativa cultivar XinJiangDaYe / MS.gene37562

KEGG: K15523
GO: -
PFAM: PF03881.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37562.t1	XP_013444949.1	98.6	293	4	0	1	293	27	319	1.50E-170	608.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37562.t1	Q9LEW8	79.3	294	60	1	1	293	33	326	7.4e-142	504.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37562.t1	A0A072TNA5	98.6	293	4	0	1	293	27	319	1.1e-170	608.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene37562	0.853083	3.02E-61	-1.69E-46
MS.gene049171	MS.gene37562	0.818535	1.86E-52	-1.69E-46
MS.gene049173	MS.gene37562	0.804025	2.63E-49	-1.69E-46
MS.gene049217	MS.gene37562	0.850334	1.82E-60	-1.69E-46
MS.gene049222	MS.gene37562	0.833339	5.65E-56	-1.69E-46
MS.gene049285	MS.gene37562	0.829703	4.44E-55	-1.69E-46
MS.gene049320	MS.gene37562	0.817774	2.77E-52	-1.69E-46
MS.gene049351	MS.gene37562	0.804114	2.52E-49	-1.69E-46
MS.gene049356	MS.gene37562	0.82502	5.88E-54	-1.69E-46
MS.gene049369	MS.gene37562	0.814027	1.90E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37562.t1	MTR_8g032700	98.635	293	4	0	1	293	27	319	0.0	603

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37562.t1	AT3G61080	79.252	294	60	1	1	293	33	326	1.02e-180	501
MS.gene37562.t1	AT3G61080	72.812	320	60	2	1	293	33	352	3.20e-175	488

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Find 75 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCTATATCAGGAGTAT+TGG	0.488540	8.3:-61052366	MS.gene37562:intron
AAATCAGGAAAATCTAGTAA+AGG	0.552473	8.3:-61051805	MS.gene37562:CDS
AAATGGAGAGCCTGTCATAT+TGG	0.375682	8.3:-61050353	MS.gene37562:CDS
AAATGGTCCTGTCACTATAT+TGG	0.394002	8.3:+61051563	None:intergenic
AACAGCCAGGCTTTGAGAAG+AGG	0.543273	8.3:-61049627	MS.gene37562:CDS
AATAGTGATACAGCAGGTAT+AGG	0.467243	8.3:+61049599	None:intergenic
AATCGCTATGATACTGATGC+TGG	0.547084	8.3:-61052496	MS.gene37562:CDS
AATGTTAGTCCAGTTGGTGG+TGG	0.583417	8.3:-61052535	MS.gene37562:CDS
ACCAATGTTAGTCCAGTTGG+TGG	0.577161	8.3:-61052538	MS.gene37562:CDS
ACCACCAACTGGACTAACAT+TGG	0.576723	8.3:+61052537	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCTTGATTAGATATTGC+AGG	-	chr8.3:61051454-61051473	MS.gene37562:intron	30.0%
AAAGACTTTAACTGATATGC+AGG	-	chr8.3:61052019-61052038	MS.gene37562:intron	30.0%
AACTTATTGCTAGGATTTGT+AGG	-	chr8.3:61050106-61050125	MS.gene37562:intron	30.0%
AATTGGGATAACTTATTGCT+AGG	-	chr8.3:61050097-61050116	MS.gene37562:intron	30.0%
ACTGTACGATCTTAAATCAA+TGG	+	chr8.3:61050806-61050825	None:intergenic	30.0%
ATGGAATTCATAGAATTTGG+CGG	-	chr8.3:61050164-61050183	MS.gene37562:intron	30.0%
CAACAATGTGACTATATGTT+GGG	-	chr8.3:61052339-61052358	MS.gene37562:CDS	30.0%
CATTCTTTGTCAAAACAAAC+AGG	-	chr8.3:61049637-61049656	MS.gene37562:CDS	30.0%
GAAAGTTGAAACTCTATATC+AGG	-	chr8.3:61049734-61049753	MS.gene37562:intron	30.0%
GATTTAAATAGTGATACAGC+AGG	+	chr8.3:61052518-61052537	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	61049513	61052617	61049513	ID=MS.gene37562
chr8.3	mRNA	61049513	61052617	61049513	ID=MS.gene37562.t1;Parent=MS.gene37562
chr8.3	exon	61052472	61052617	61052472	ID=MS.gene37562.t1.exon1;Parent=MS.gene37562.t1
chr8.3	CDS	61052472	61052617	61052472	ID=cds.MS.gene37562.t1;Parent=MS.gene37562.t1
chr8.3	exon	61052284	61052374	61052284	ID=MS.gene37562.t1.exon2;Parent=MS.gene37562.t1
chr8.3	CDS	61052284	61052374	61052284	ID=cds.MS.gene37562.t1;Parent=MS.gene37562.t1
chr8.3	exon	61051931	61052002	61051931	ID=MS.gene37562.t1.exon3;Parent=MS.gene37562.t1
chr8.3	CDS	61051931	61052002	61051931	ID=cds.MS.gene37562.t1;Parent=MS.gene37562.t1
chr8.3	exon	61051772	61051860	61051772	ID=MS.gene37562.t1.exon4;Parent=MS.gene37562.t1
chr8.3	CDS	61051772	61051860	61051772	ID=cds.MS.gene37562.t1;Parent=MS.gene37562.t1
chr8.3	exon	61051554	61051672	61051554	ID=MS.gene37562.t1.exon5;Parent=MS.gene37562.t1
chr8.3	CDS	61051554	61051672	61051554	ID=cds.MS.gene37562.t1;Parent=MS.gene37562.t1
chr8.3	exon	61050338	61050478	61050338	ID=MS.gene37562.t1.exon6;Parent=MS.gene37562.t1
chr8.3	CDS	61050338	61050478	61050338	ID=cds.MS.gene37562.t1;Parent=MS.gene37562.t1
chr8.3	exon	61049885	61049961	61049885	ID=MS.gene37562.t1.exon7;Parent=MS.gene37562.t1
chr8.3	CDS	61049885	61049961	61049885	ID=cds.MS.gene37562.t1;Parent=MS.gene37562.t1
chr8.3	exon	61049513	61049659	61049513	ID=MS.gene37562.t1.exon8;Parent=MS.gene37562.t1
chr8.3	CDS	61049513	61049659	61049513	ID=cds.MS.gene37562.t1;Parent=MS.gene37562.t1

Gene Sequence

>MS.gene37562

ATGAGTAAGGATCCGGTTCGTGAGTGGATTCTCTCTGAAGGAAAAGCTTCAAAGATAACCAATGTTAGTCCAGTTGGTGGTGGTTGTATCAATTTTGCGAATCGCTATGATACTGATGCTGGTTCATTCTTTGTCAAAACAAACAGGTAGTATGGACTATAAAATATACATTCTGCTGTTTTTCTTTTGATGGTGTGAGCTATTTGTTGGATTATGTTGCTGAAAGTTGAAACTCTATATCAGGAGTATTGGTCCATCAATGTTTGAGGCTGAGGCTCTTGGTTTAGGAGCTATGTATGAAACCGGGACCATCCGTGTGCCTAAGCCGTACAAGGTGAGAAAATTTTACAGTTTGTGAAGCACAAACACAGACACAGAAGCTGGACATGACACTAACACGTCAACACCGATAATAATGTGAGAAAATGAAATGATTGAAATTAACAACATGTATCGGTGTCATATATCATTGTATGTTGGACATTGGACACGCCTTCAATCTGAAATGACAGTATTACATAGTTAGCAGTAGTAAGTTGTGAAGGAATCAGGAAGATACTGTTTTTACTAGTTTGTTCGAAGGAAATTGGGATAACTTATTGCTAGGATTTGTAGGTTGGATCGCTACCGTCTGGTGGTTCTTTCATCATTATGGAATTCATAGAATTTGGCGGATCTAGAGATCAGGTGAGTCTCTTAGAAAGTAGTTCTAATAAGAAGTACAAGCGGACTTAAATTTTAACTTCTTGCTTCCCAGTCTGTTCTAGGAAGGAAGCTTGCGCAAATGCACAAATCAGGAAAATCTAGTAAAGGCTTTGGTTTCGACGTTGAAAACACCATTGGCAGGTATGTTATTGTAATTGTTATGGTTATCATTTATCATGTCTTGTCTTTTGTAATTTGTACTAATTGATTTTTAGTTATATGATCTATCTTTTGATGTAGCACACCACAGATAAATACCTGGTCTTCAGACTGGATTCAGTTTTACGGCGAGCACAGATTAGGTTACCAGTTGCAGCTGGCATTCGACCAATATAGTGACAGGACCATTTTGGAAAAAGGTAACTTTGCTCCAATATAGTGACAGTACTACTACCGTTCTTTCCATTCGCTGATTTTGGCCTTGCACCTGATTTTAGTGTATGACATTTATATTGAATAAACTGAGCGGGCCAATTGAAATTGTGTGCACAAACATATTAGATGCATTAGAGATTACATCAAGTTTACAATCCGGATTCCTTCCAGTAATAAAAGCTCACAGTTACACACCGTAAAAAATCTCGACCATTGATTTAAGATCGTACAGTCCAGATTACACATTCACTAAATCAGTTTTAAATGGCCATTAATTTAGATCGGAGGGTTGAGGTCGGTAATTGTTTGATGCAGTTACTGCAGGAAATCCATTTCCCAAGTTTACTGCATAGTGAAAATAGGAGGCTATTATTTTCTTGAGGATATTTGTATATATTTTGATCTGTCATGTATGAACAGTTCCTTGTTTTTACATATACTCTTGGTGCCTATGAATAAGTGTCTGAGACAAACCAAAAGGAATATACTACCTTCAAATAGAGGTCACAGTCGCGTTAAGGAACTTGCGATTTCGGCTGTTACGGATGTTGCGTTACGGATTGTAGTCATCACGATGTAAATTAATCACGGGATTCTTCATAACAACGTATAATGTATAATAACTTAATTTCTCATTGTTTTTTCATAATTTAGTAAAAATTGTGGTTTTTATCCATAAAAACAGGGTTCTCAGTCTATTTTTTGGGAACGTTGGCCATAACAGGGTTTCGTCACGGCAGTGTTACAATGTTTAATCACAGTTGTTTCCATGATTTCGGTTCACTATGGTAAAACAGAGAAAAAAGACACTATCCATACCTTTTTGTCGCGGCCGTTTTCACGGTAACAGGATGTTTTATAAAACCTTGATTAGATATTGCAGGCTATTTCATAAGAGATAAAAAAAGTACAGCTAAACAGTGTTATGAACTTTGTCAAGCTTTGCCATTTGTTTATGATATTTTCTCATTACAAGTACTTAGTTTATAATGATATAAGTGTACTGGCCTCTCCTTCAATAAAACTCTACGATTTATATCTGATTGACTTGTTCTACAGGGCAGAGATTGGTGGAGAACATTGCGCCGCTGTTTGACAATGTGGAGATAGAACCATGCTTGCTACATGGAGATCTCTGGAGTGGTAACATAAGCTCTGACAAAAATGGAGAGCCTGTCATATTGGACCCAGCATGTTATTGTAAGTCAAGCATTTATAAGAAGCTGTTGTTTGGCAACCTATGTTTGGGACTGGATTATCTTAGGGTGTAACGAGTCGGTTTGGATTGTTTTTTGAAAGTAAAAAACCTAACCAACAAAAAAGAGACCGTTTGATTCGTTTTTTGCAATTTGTTCTCATGAAATCCAAGAGCCAAACCATGAAGAGCGGGTTGGTTTGGTTCGGATCAAGGTGATTGACATTTTCAAAAGACTTTAACTGATATGCAGGCCTAGAAGTATTAGTTGCAAGCTAGAACCTCTAGCTTTGGTTGTAATTCGAGTGTTCCAAATATGTGAGACTAGAACAATCATACAATCATATAAGGAACTAACTGTTATGCTGTCTTGTTCAATAGATGGACACAATGAGGCAGAATTTGGTATGTCTTGGTGTGCTGGCTTTGGAGGCTCATTCTATAACTCTTATTTTGAGGTAATATTGTATGAAACAAATTAATTAGCATCAGTTAATATCTATCAAAATGTCAAGTTTTTTTTCATCAAATTTATGAAAACCATTCTTGCTCAACAATGTGACTATATGTTGGGCTTCTCAATATCTTTGTTAAAATAATACATACATATATTCACTTAGCATGTGAAATATCATTTGATTCTGTAATTTTCAGATTTTGATAATTTTAAATAATCTCTCCAGGTAATACCTAAACAGCCAGGCTTTGAGAAGAGGAGAGACCTATACCTGCTGTATCACTATTTAAATCATTACAATCTCTTTGGCTCTGGATACAGATCATCTGCTATGTCTATCATTGATGATTATCTAGCTTATTTAAAAGCTTAG

Protein sequence

>MS.gene37562.t1

MSKDPVREWILSEGKASKITNVSPVGGGCINFANRYDTDAGSFFVKTNRSIGPSMFEAEALGLGAMYETGTIRVPKPYKVGSLPSGGSFIIMEFIEFGGSRDQSVLGRKLAQMHKSGKSSKGFGFDVENTIGSTPQINTWSSDWIQFYGEHRLGYQLQLAFDQYSDRTILEKGQRLVENIAPLFDNVEIEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAGFGGSFYNSYFEVIPKQPGFEKRRDLYLLYHYLNHYNLFGSGYRSSAMSIIDDYLAYLKA