Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43067.t1 | XP_024631548.1 | 98.5 | 392 | 6 | 0 | 69 | 460 | 3 | 394 | 1.00E-221 | 779.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43067.t1 | Q27YU7 | 32.8 | 180 | 103 | 4 | 235 | 398 | 282 | 459 | 3.1e-17 | 91.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43067.t1 | A0A396JAV0 | 98.5 | 392 | 6 | 0 | 69 | 460 | 3 | 394 | 7.4e-222 | 779.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene43067 | 0.847986 | 8.17E-60 | -1.69E-46 |
| MS.gene049171 | MS.gene43067 | 0.807087 | 6.00E-50 | -1.69E-46 |
| MS.gene049217 | MS.gene43067 | 0.84508 | 5.08E-59 | -1.69E-46 |
| MS.gene049222 | MS.gene43067 | 0.819068 | 1.41E-52 | -1.69E-46 |
| MS.gene049285 | MS.gene43067 | 0.824009 | 1.02E-53 | -1.69E-46 |
| MS.gene049356 | MS.gene43067 | 0.847386 | 1.20E-59 | -1.69E-46 |
| MS.gene049369 | MS.gene43067 | 0.830594 | 2.69E-55 | -1.69E-46 |
| MS.gene04939 | MS.gene43067 | 0.816129 | 6.48E-52 | -1.69E-46 |
| MS.gene049427 | MS.gene43067 | 0.825765 | 3.92E-54 | -1.69E-46 |
| MS.gene049488 | MS.gene43067 | 0.813621 | 2.33E-51 | -1.69E-46 |
| MS.gene049609 | MS.gene43067 | 0.83753 | 4.92E-57 | -1.69E-46 |
| MS.gene049614 | MS.gene43067 | 0.810406 | 1.17E-50 | -1.69E-46 |
| MS.gene049633 | MS.gene43067 | 0.822295 | 2.56E-53 | -1.69E-46 |
| MS.gene049661 | MS.gene43067 | 0.802666 | 5.03E-49 | -1.69E-46 |
| MS.gene049805 | MS.gene43067 | 0.869196 | 3.71E-66 | -1.69E-46 |
| MS.gene050163 | MS.gene43067 | 0.808173 | 3.53E-50 | -1.69E-46 |
| MS.gene050333 | MS.gene43067 | 0.823839 | 1.12E-53 | -1.69E-46 |
| MS.gene050432 | MS.gene43067 | 0.803195 | 3.91E-49 | -1.69E-46 |
| MS.gene050444 | MS.gene43067 | 0.833614 | 4.82E-56 | -1.69E-46 |
| MS.gene050475 | MS.gene43067 | -0.818608 | 1.79E-52 | -1.69E-46 |
| MS.gene050520 | MS.gene43067 | 0.803152 | 3.99E-49 | -1.69E-46 |
| MS.gene050529 | MS.gene43067 | 0.804269 | 2.34E-49 | -1.69E-46 |
| MS.gene050541 | MS.gene43067 | -0.813368 | 2.65E-51 | -1.69E-46 |
| MS.gene050593 | MS.gene43067 | 0.827421 | 1.58E-54 | -1.69E-46 |
| MS.gene050670 | MS.gene43067 | 0.839952 | 1.16E-57 | -1.69E-46 |
| MS.gene050675 | MS.gene43067 | 0.816195 | 6.27E-52 | -1.69E-46 |
| MS.gene050699 | MS.gene43067 | 0.801132 | 1.04E-48 | -1.69E-46 |
| MS.gene050747 | MS.gene43067 | 0.824601 | 7.39E-54 | -1.69E-46 |
| MS.gene050767 | MS.gene43067 | 0.821696 | 3.52E-53 | -1.69E-46 |
| MS.gene050770 | MS.gene43067 | 0.822228 | 2.65E-53 | -1.69E-46 |
| MS.gene050772 | MS.gene43067 | 0.854626 | 1.09E-61 | -1.69E-46 |
| MS.gene05080 | MS.gene43067 | 0.847004 | 1.52E-59 | -1.69E-46 |
| MS.gene050812 | MS.gene43067 | 0.810862 | 9.33E-51 | -1.69E-46 |
| MS.gene050950 | MS.gene43067 | 0.815093 | 1.10E-51 | -1.69E-46 |
| MS.gene05105 | MS.gene43067 | 0.869203 | 3.69E-66 | -1.69E-46 |
| MS.gene051228 | MS.gene43067 | 0.838825 | 2.28E-57 | -1.69E-46 |
| MS.gene051387 | MS.gene43067 | 0.833599 | 4.86E-56 | -1.69E-46 |
| MS.gene051605 | MS.gene43067 | 0.816951 | 4.24E-52 | -1.69E-46 |
| MS.gene051666 | MS.gene43067 | 0.842876 | 1.98E-58 | -1.69E-46 |
| MS.gene051810 | MS.gene43067 | 0.808899 | 2.47E-50 | -1.69E-46 |
| MS.gene051838 | MS.gene43067 | 0.810901 | 9.15E-51 | -1.69E-46 |
| MS.gene051858 | MS.gene43067 | 0.843864 | 1.08E-58 | -1.69E-46 |
| MS.gene051874 | MS.gene43067 | 0.822067 | 2.89E-53 | -1.69E-46 |
| MS.gene052078 | MS.gene43067 | 0.812964 | 3.25E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene43067 | 0.842116 | 3.15E-58 | -1.69E-46 |
| MS.gene052271 | MS.gene43067 | 0.838431 | 2.89E-57 | -1.69E-46 |
| MS.gene052290 | MS.gene43067 | 0.827249 | 1.74E-54 | -1.69E-46 |
| MS.gene052310 | MS.gene43067 | 0.858651 | 7.12E-63 | -1.69E-46 |
| MS.gene052322 | MS.gene43067 | 0.801724 | 7.87E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene43067 | 0.823083 | 1.68E-53 | -1.69E-46 |
| MS.gene052379 | MS.gene43067 | 0.848401 | 6.28E-60 | -1.69E-46 |
| MS.gene052421 | MS.gene43067 | 0.856744 | 2.61E-62 | -1.69E-46 |
| MS.gene052481 | MS.gene43067 | 0.808068 | 3.71E-50 | -1.69E-46 |
| MS.gene052484 | MS.gene43067 | 0.824528 | 7.69E-54 | -1.69E-46 |
| MS.gene052485 | MS.gene43067 | 0.812444 | 4.23E-51 | -1.69E-46 |
| MS.gene052615 | MS.gene43067 | 0.86563 | 5.14E-65 | -1.69E-46 |
| MS.gene052870 | MS.gene43067 | 0.856304 | 3.52E-62 | -1.69E-46 |
| MS.gene052872 | MS.gene43067 | 0.84817 | 7.27E-60 | -1.69E-46 |
| MS.gene053009 | MS.gene43067 | 0.856884 | 2.38E-62 | -1.69E-46 |
| MS.gene053103 | MS.gene43067 | 0.8682 | 7.79E-66 | -1.69E-46 |
| MS.gene053104 | MS.gene43067 | 0.83878 | 2.35E-57 | -1.69E-46 |
| MS.gene053207 | MS.gene43067 | 0.824562 | 7.55E-54 | -1.69E-46 |
| MS.gene053209 | MS.gene43067 | 0.812931 | 3.31E-51 | -1.69E-46 |
| MS.gene053213 | MS.gene43067 | 0.818641 | 1.76E-52 | -1.69E-46 |
| MS.gene053286 | MS.gene43067 | 0.80559 | 1.24E-49 | -1.69E-46 |
| MS.gene053322 | MS.gene43067 | 0.844727 | 6.32E-59 | -1.69E-46 |
| MS.gene053384 | MS.gene43067 | 0.821843 | 3.26E-53 | -1.69E-46 |
| MS.gene053449 | MS.gene43067 | 0.824125 | 9.56E-54 | -1.69E-46 |
| MS.gene053574 | MS.gene43067 | 0.809434 | 1.90E-50 | -1.69E-46 |
| MS.gene053632 | MS.gene43067 | 0.869196 | 3.71E-66 | -1.69E-46 |
| MS.gene053758 | MS.gene43067 | 0.815248 | 1.02E-51 | -1.69E-46 |
| MS.gene053813 | MS.gene43067 | 0.801447 | 8.97E-49 | -1.69E-46 |
| MS.gene053824 | MS.gene43067 | 0.809958 | 1.46E-50 | -1.69E-46 |
| MS.gene053912 | MS.gene43067 | 0.877305 | 6.99E-69 | -1.69E-46 |
| MS.gene053915 | MS.gene43067 | 0.818862 | 1.57E-52 | -1.69E-46 |
| MS.gene053916 | MS.gene43067 | 0.855909 | 4.60E-62 | -1.69E-46 |
| MS.gene054123 | MS.gene43067 | 0.803439 | 3.48E-49 | -1.69E-46 |
| MS.gene054376 | MS.gene43067 | 0.80233 | 5.91E-49 | -1.69E-46 |
| MS.gene054408 | MS.gene43067 | 0.803389 | 3.57E-49 | -1.69E-46 |
| MS.gene054595 | MS.gene43067 | 0.812674 | 3.77E-51 | -1.69E-46 |
| MS.gene054600 | MS.gene43067 | 0.810024 | 1.42E-50 | -1.69E-46 |
| MS.gene054642 | MS.gene43067 | 0.822009 | 2.98E-53 | -1.69E-46 |
| MS.gene054802 | MS.gene43067 | 0.802993 | 4.31E-49 | -1.69E-46 |
| MS.gene054804 | MS.gene43067 | 0.806292 | 8.83E-50 | -1.69E-46 |
| MS.gene05494 | MS.gene43067 | 0.838572 | 2.66E-57 | -1.69E-46 |
| MS.gene05505 | MS.gene43067 | 0.871472 | 6.66E-67 | -1.69E-46 |
| MS.gene055116 | MS.gene43067 | 0.815545 | 8.75E-52 | -1.69E-46 |
| MS.gene055206 | MS.gene43067 | 0.849316 | 3.50E-60 | -1.69E-46 |
| MS.gene055224 | MS.gene43067 | 0.802252 | 6.13E-49 | -1.69E-46 |
| MS.gene055254 | MS.gene43067 | 0.802884 | 4.54E-49 | -1.69E-46 |
| MS.gene055397 | MS.gene43067 | 0.846817 | 1.71E-59 | -1.69E-46 |
| MS.gene055412 | MS.gene43067 | 0.852354 | 4.88E-61 | -1.69E-46 |
| MS.gene055499 | MS.gene43067 | 0.807285 | 5.45E-50 | -1.69E-46 |
| MS.gene055502 | MS.gene43067 | 0.830821 | 2.37E-55 | -1.69E-46 |
| MS.gene055647 | MS.gene43067 | 0.82447 | 7.93E-54 | -1.69E-46 |
| MS.gene055722 | MS.gene43067 | 0.842808 | 2.06E-58 | -1.69E-46 |
| MS.gene05592 | MS.gene43067 | 0.843517 | 1.33E-58 | -1.69E-46 |
| MS.gene055941 | MS.gene43067 | 0.854547 | 1.14E-61 | -1.69E-46 |
| MS.gene056449 | MS.gene43067 | 0.818408 | 1.99E-52 | -1.69E-46 |
| MS.gene056487 | MS.gene43067 | 0.83543 | 1.69E-56 | -1.69E-46 |
| MS.gene056511 | MS.gene43067 | 0.848296 | 6.71E-60 | -1.69E-46 |
| MS.gene056609 | MS.gene43067 | 0.857154 | 1.98E-62 | -1.69E-46 |
| MS.gene05664 | MS.gene43067 | 0.804774 | 1.84E-49 | -1.69E-46 |
| MS.gene056657 | MS.gene43067 | 0.81949 | 1.13E-52 | -1.69E-46 |
| MS.gene056659 | MS.gene43067 | 0.836182 | 1.09E-56 | -1.69E-46 |
| MS.gene056719 | MS.gene43067 | 0.807796 | 4.24E-50 | -1.69E-46 |
| MS.gene056897 | MS.gene43067 | 0.81015 | 1.33E-50 | -1.69E-46 |
| MS.gene056903 | MS.gene43067 | 0.815095 | 1.10E-51 | -1.69E-46 |
| MS.gene057011 | MS.gene43067 | 0.825434 | 4.70E-54 | -1.69E-46 |
| MS.gene057076 | MS.gene43067 | 0.86986 | 2.26E-66 | -1.69E-46 |
| MS.gene057123 | MS.gene43067 | 0.814053 | 1.87E-51 | -1.69E-46 |
| MS.gene057124 | MS.gene43067 | 0.824247 | 8.95E-54 | -1.69E-46 |
| MS.gene057129 | MS.gene43067 | 0.844177 | 8.88E-59 | -1.69E-46 |
| MS.gene057146 | MS.gene43067 | 0.839717 | 1.34E-57 | -1.69E-46 |
| MS.gene057331 | MS.gene43067 | 0.805763 | 1.14E-49 | -1.69E-46 |
| MS.gene05735 | MS.gene43067 | 0.832027 | 1.19E-55 | -1.69E-46 |
| MS.gene057416 | MS.gene43067 | 0.857427 | 1.64E-62 | -1.69E-46 |
| MS.gene057734 | MS.gene43067 | 0.81419 | 1.75E-51 | -1.69E-46 |
| MS.gene057749 | MS.gene43067 | 0.815639 | 8.34E-52 | -1.69E-46 |
| MS.gene057823 | MS.gene43067 | 0.829264 | 5.67E-55 | -1.69E-46 |
| MS.gene058019 | MS.gene43067 | 0.820241 | 7.61E-53 | -1.69E-46 |
| MS.gene058082 | MS.gene43067 | 0.814206 | 1.73E-51 | -1.69E-46 |
| MS.gene058120 | MS.gene43067 | 0.810474 | 1.13E-50 | -1.69E-46 |
| MS.gene058130 | MS.gene43067 | 0.844116 | 9.23E-59 | -1.69E-46 |
| MS.gene058293 | MS.gene43067 | 0.819305 | 1.25E-52 | -1.69E-46 |
| MS.gene058338 | MS.gene43067 | 0.813918 | 2.01E-51 | -1.69E-46 |
| MS.gene058365 | MS.gene43067 | 0.80608 | 9.78E-50 | -1.69E-46 |
| MS.gene058419 | MS.gene43067 | 0.831061 | 2.07E-55 | -1.69E-46 |
| MS.gene058660 | MS.gene43067 | 0.831186 | 1.93E-55 | -1.69E-46 |
| MS.gene058723 | MS.gene43067 | 0.811848 | 5.70E-51 | -1.69E-46 |
| MS.gene058773 | MS.gene43067 | 0.807243 | 5.56E-50 | -1.69E-46 |
| MS.gene058838 | MS.gene43067 | 0.816874 | 4.42E-52 | -1.69E-46 |
| MS.gene058928 | MS.gene43067 | 0.848341 | 6.52E-60 | -1.69E-46 |
| MS.gene058948 | MS.gene43067 | 0.800872 | 1.18E-48 | -1.69E-46 |
| MS.gene058993 | MS.gene43067 | 0.810397 | 1.18E-50 | -1.69E-46 |
| MS.gene059023 | MS.gene43067 | 0.807967 | 3.90E-50 | -1.69E-46 |
| MS.gene059029 | MS.gene43067 | 0.822543 | 2.24E-53 | -1.69E-46 |
| MS.gene05934 | MS.gene43067 | 0.828228 | 1.01E-54 | -1.69E-46 |
| MS.gene059366 | MS.gene43067 | 0.838859 | 2.24E-57 | -1.69E-46 |
| MS.gene059368 | MS.gene43067 | 0.801587 | 8.39E-49 | -1.69E-46 |
| MS.gene059455 | MS.gene43067 | 0.80495 | 1.69E-49 | -1.69E-46 |
| MS.gene059536 | MS.gene43067 | 0.829454 | 5.10E-55 | -1.69E-46 |
| MS.gene059597 | MS.gene43067 | 0.827183 | 1.80E-54 | -1.69E-46 |
| MS.gene05959 | MS.gene43067 | 0.814079 | 1.85E-51 | -1.69E-46 |
| MS.gene059676 | MS.gene43067 | 0.864169 | 1.47E-64 | -1.69E-46 |
| MS.gene059677 | MS.gene43067 | 0.811848 | 5.70E-51 | -1.69E-46 |
| MS.gene059688 | MS.gene43067 | 0.841737 | 3.96E-58 | -1.69E-46 |
| MS.gene059692 | MS.gene43067 | 0.843055 | 1.77E-58 | -1.69E-46 |
| MS.gene059695 | MS.gene43067 | 0.844635 | 6.69E-59 | -1.69E-46 |
| MS.gene059711 | MS.gene43067 | 0.858684 | 6.96E-63 | -1.69E-46 |
| MS.gene059718 | MS.gene43067 | 0.847659 | 1.01E-59 | -1.69E-46 |
| MS.gene05986 | MS.gene43067 | 0.810816 | 9.55E-51 | -1.69E-46 |
| MS.gene059894 | MS.gene43067 | 0.800931 | 1.14E-48 | -1.69E-46 |
| MS.gene059902 | MS.gene43067 | 0.841738 | 3.96E-58 | -1.69E-46 |
| MS.gene059960 | MS.gene43067 | 0.862313 | 5.54E-64 | -1.69E-46 |
| MS.gene060804 | MS.gene43067 | 0.830482 | 2.87E-55 | -1.69E-46 |
| MS.gene060818 | MS.gene43067 | 0.877675 | 5.19E-69 | -1.69E-46 |
| MS.gene060835 | MS.gene43067 | 0.82061 | 6.26E-53 | -1.69E-46 |
| MS.gene060837 | MS.gene43067 | 0.833384 | 5.50E-56 | -1.69E-46 |
| MS.gene06092 | MS.gene43067 | 0.816168 | 6.35E-52 | -1.69E-46 |
| MS.gene060981 | MS.gene43067 | 0.829689 | 4.47E-55 | -1.69E-46 |
| MS.gene061041 | MS.gene43067 | 0.873533 | 1.37E-67 | -1.69E-46 |
| MS.gene061051 | MS.gene43067 | -0.809073 | 2.27E-50 | -1.69E-46 |
| MS.gene061150 | MS.gene43067 | 0.819768 | 9.76E-53 | -1.69E-46 |
| MS.gene061200 | MS.gene43067 | 0.853161 | 2.87E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43067.t1 | MTR_2g085125 | 86.889 | 389 | 41 | 3 | 73 | 460 | 7 | 386 | 0.0 | 685 |
| MS.gene43067.t1 | MTR_2g085135 | 96.296 | 108 | 4 | 0 | 69 | 176 | 3 | 110 | 7.19e-70 | 217 |
| MS.gene43067.t1 | MTR_3g449790 | 26.184 | 359 | 212 | 16 | 113 | 447 | 30 | 359 | 1.44e-19 | 90.5 |
| MS.gene43067.t1 | MTR_3g092140 | 25.616 | 203 | 134 | 7 | 148 | 335 | 62 | 262 | 2.02e-12 | 69.3 |
| MS.gene43067.t1 | MTR_1g102750 | 28.700 | 223 | 139 | 8 | 122 | 334 | 7 | 219 | 4.72e-12 | 67.0 |
| MS.gene43067.t1 | MTR_1g102750 | 28.700 | 223 | 139 | 8 | 122 | 334 | 7 | 219 | 6.52e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43067.t1 | AT2G27680 | 83.333 | 348 | 58 | 0 | 112 | 459 | 36 | 383 | 0.0 | 634 |
| MS.gene43067.t1 | AT1G06690 | 27.139 | 339 | 202 | 13 | 82 | 399 | 11 | 325 | 4.58e-23 | 100 |
| MS.gene43067.t1 | AT5G53580 | 23.333 | 270 | 176 | 9 | 148 | 402 | 63 | 316 | 1.25e-13 | 72.4 |
Find 127 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACATTGTTGTTGGGCTAT+TGG | 0.191013 | 2.4:-14149301 | None:intergenic |
| CACATTGTTGTTGGGCTATT+GGG | 0.240075 | 2.4:-14149300 | None:intergenic |
| GAAATATGTAGAGTTCTTAA+TGG | 0.252504 | 2.4:+14152585 | MS.gene43067:CDS |
| GCAGAGCTTTGTCAGCTTAC+AGG | 0.253188 | 2.4:+14155939 | MS.gene43067:CDS |
| AGGTGGGATTATTCAAATTC+AGG | 0.258984 | 2.4:+14155575 | MS.gene43067:intron |
| ACCGGTTTGGGCGGTTGGGC+GGG | 0.308988 | 2.4:+14149178 | MS.gene43067:CDS |
| TGGGCGGTTGGGCGGGGCGG+AGG | 0.315885 | 2.4:+14149185 | MS.gene43067:CDS |
| GCGGAGGAAACGGGTTCTGC+TGG | 0.317831 | 2.4:+14149201 | MS.gene43067:CDS |
| AACCGGTTTGGGCGGTTGGG+CGG | 0.324171 | 2.4:+14149177 | MS.gene43067:CDS |
| GTTGGGCGGGGCGGAGGAAA+CGG | 0.324669 | 2.4:+14149191 | MS.gene43067:CDS |
| TGGACGGGCTGAACCGGTTT+GGG | 0.326898 | 2.4:+14149166 | MS.gene43067:CDS |
| GTGGATGCTTGGGGAGGATG+GGG | 0.330296 | 2.4:+14156364 | MS.gene43067:CDS |
| GTGGCAGATGGTGGATGCTT+GGG | 0.334800 | 2.4:+14156354 | MS.gene43067:intron |
| GCTGAACCGGTTTGGGCGGT+TGG | 0.337785 | 2.4:+14149173 | MS.gene43067:CDS |
| TATGCGTCCCCAACAGAAAA+TGG | 0.349887 | 2.4:+14155917 | MS.gene43067:CDS |
| TATTCTAACAACTTCGGTTC+GGG | 0.351408 | 2.4:-14149274 | None:intergenic |
| TAACAACTTCGGTTCGGGTT+CGG | 0.354181 | 2.4:-14149269 | None:intergenic |
| CCGGTTTGGGCGGTTGGGCG+GGG | 0.355142 | 2.4:+14149179 | MS.gene43067:CDS |
| AAGCTACTTGTCATCTTAAC+TGG | 0.356854 | 2.4:-14155083 | None:intergenic |
| GGTGGATGCTTGGGGAGGAT+GGG | 0.363054 | 2.4:+14156363 | MS.gene43067:CDS |
| GTGGCAGACAAGTGGTGGTT+GGG | 0.363851 | 2.4:+14152611 | MS.gene43067:CDS |
| GGGCCAGCTGAAGATCTATA+TGG | 0.364721 | 2.4:+14154804 | MS.gene43067:CDS |
| AAGTGGGCTCACATTGTTGT+TGG | 0.374426 | 2.4:-14149309 | None:intergenic |
| TGGTGGATGCTTGGGGAGGA+TGG | 0.377292 | 2.4:+14156362 | MS.gene43067:CDS |
| TTGGGCGGGGCGGAGGAAAC+GGG | 0.380855 | 2.4:+14149192 | MS.gene43067:CDS |
| ATGGACGGGCTGAACCGGTT+TGG | 0.380935 | 2.4:+14149165 | MS.gene43067:CDS |
| ATGGACGGTGGCGGAGGGTG+TGG | 0.388276 | 2.4:+14149230 | MS.gene43067:CDS |
| AAGAAGATGTAAACAGCATA+AGG | 0.390321 | 2.4:+14156697 | MS.gene43067:CDS |
| AGGGATGGAGTGTTTATTGC+AGG | 0.394848 | 2.4:-14156160 | None:intergenic |
| AAGGATCTTCTTAAAGTGAT+TGG | 0.395916 | 2.4:+14156738 | MS.gene43067:CDS |
| CATCCCTCTCAAAATACAAA+AGG | 0.396975 | 2.4:+14156176 | MS.gene43067:CDS |
| GTATCCATGGACGGTGGCGG+AGG | 0.403975 | 2.4:+14149224 | MS.gene43067:CDS |
| GACAAATGGACGGGCTGAAC+CGG | 0.407797 | 2.4:+14149160 | None:intergenic |
| CTGAACCGGTTTGGGCGGTT+GGG | 0.414212 | 2.4:+14149174 | MS.gene43067:CDS |
| TGCAGGTATGGGACAGTAAT+GGG | 0.414444 | 2.4:+14156082 | MS.gene43067:intron |
| AGTGGGCTCACATTGTTGTT+GGG | 0.418400 | 2.4:-14149308 | None:intergenic |
| GTATTCTAACAACTTCGGTT+CGG | 0.419798 | 2.4:-14149275 | None:intergenic |
| TGGATATGCTTCAGTTCCAT+TGG | 0.423981 | 2.4:+14155156 | MS.gene43067:CDS |
| TTTATTGCAGGTCCAGCAAA+AGG | 0.427415 | 2.4:-14156148 | None:intergenic |
| CGTGGCAGATGGTGGATGCT+TGG | 0.431718 | 2.4:+14156353 | MS.gene43067:intron |
| GAGAATGGACGTGGAATCCT+TGG | 0.433488 | 2.4:+14155136 | MS.gene43067:CDS |
| GGTTCTCTGTGAGTGGGGAT+TGG | 0.441664 | 2.4:-14152451 | None:intergenic |
| GTTGTTGAAGCGAGTGAAAG+TGG | 0.443100 | 2.4:-14152418 | None:intergenic |
| ATGCTCCGGTATGCTGATTC+CGG | 0.449274 | 2.4:+14152666 | MS.gene43067:CDS |
| TCGAATCAATCTTGCGCTGT+TGG | 0.455461 | 2.4:-14152472 | None:intergenic |
| GTTTGGGCGGTTGGGCGGGG+CGG | 0.456850 | 2.4:+14149182 | MS.gene43067:CDS |
| GGAGGATGGGGTTTGTTCCA+AGG | 0.459555 | 2.4:+14156376 | MS.gene43067:CDS |
| CCCCGCCCAACCGCCCAAAC+CGG | 0.465941 | 2.4:-14149179 | None:intergenic |
| CGCTGTTGGTTCTCTGTGAG+TGG | 0.468927 | 2.4:-14152458 | None:intergenic |
| TCAAATAGAATTACTTCCAA+TGG | 0.472323 | 2.4:-14151361 | None:intergenic |
| TGGGTATCCATGGACGGTGG+CGG | 0.473695 | 2.4:+14149221 | MS.gene43067:CDS |
| TAAGAGTTCGAAGAAGTCCT+TGG | 0.474989 | 2.4:-14156393 | None:intergenic |
| CGGGTTCTGCTGGGTATCCA+TGG | 0.476280 | 2.4:+14149211 | MS.gene43067:CDS |
| AACCTGCAGCCTGCTGTAGC+AGG | 0.486594 | 2.4:+14156597 | MS.gene43067:intron |
| ACACCCTCCGCCACCGTCCA+TGG | 0.486609 | 2.4:-14149228 | None:intergenic |
| AGCGAGTGAAAGTGGAGAAT+AGG | 0.486717 | 2.4:-14152410 | None:intergenic |
| ACTTCCAATGGAGGAGGAAG+AGG | 0.493182 | 2.4:-14151349 | None:intergenic |
| TGTGGCAGACAAGTGGTGGT+TGG | 0.493594 | 2.4:+14152610 | MS.gene43067:CDS |
| GCTGTTGGTTCTCTGTGAGT+GGG | 0.496090 | 2.4:-14152457 | None:intergenic |
| TATCCATGGACGGTGGCGGA+GGG | 0.498606 | 2.4:+14149225 | MS.gene43067:CDS |
| GATTCCCATTGTGAGCAATC+AGG | 0.502650 | 2.4:+14155787 | MS.gene43067:CDS |
| GAGTAACGGAAACGATTCAT+TGG | 0.507063 | 2.4:+14152563 | MS.gene43067:CDS |
| TCTACCTGATTGCTCACAAT+GGG | 0.509738 | 2.4:-14155791 | None:intergenic |
| ACTCCCTCTTCCTCCTCCAT+TGG | 0.513905 | 2.4:+14151345 | MS.gene43067:CDS |
| CGGAGGAAACGGGTTCTGCT+GGG | 0.515087 | 2.4:+14149202 | MS.gene43067:CDS |
| CTTGTCATCTTAACTGGTGG+TGG | 0.516768 | 2.4:-14155077 | None:intergenic |
| TGGCAGACAAGTGGTGGTTG+GGG | 0.516858 | 2.4:+14152612 | MS.gene43067:CDS |
| TTCTGCTGGGTATCCATGGA+CGG | 0.519137 | 2.4:+14149215 | MS.gene43067:CDS |
| ATCCCTCTCAAAATACAAAA+GGG | 0.521470 | 2.4:+14156177 | MS.gene43067:CDS |
| GGCCAGCTGAAGATCTATAT+GGG | 0.529176 | 2.4:+14154805 | MS.gene43067:CDS |
| TAATGTGTCAAGGAAGAGAA+TGG | 0.530921 | 2.4:+14155121 | MS.gene43067:CDS |
| TGGCAGATGGTGGATGCTTG+GGG | 0.538869 | 2.4:+14156355 | MS.gene43067:intron |
| ACCATTGATCCTGCTACAGC+AGG | 0.539745 | 2.4:-14156606 | None:intergenic |
| GGTTCGGGTTCGGTTTGCAA+CGG | 0.542206 | 2.4:-14149259 | None:intergenic |
| GGATGTTTATGTTGGTGTCA+AGG | 0.543246 | 2.4:-14156126 | None:intergenic |
| TTTGATGCAGTCTCACTAAG+TGG | 0.545643 | 2.4:+14155051 | MS.gene43067:intron |
| AGAAGATGTAAACAGCATAA+GGG | 0.550057 | 2.4:+14156698 | MS.gene43067:CDS |
| AGCAAAAGGGATGTTTATGT+TGG | 0.553357 | 2.4:-14156134 | None:intergenic |
| TCAATGGTTGGTGTAAGACT+TGG | 0.555070 | 2.4:+14156621 | MS.gene43067:CDS |
| GCCTGCTGTAGCAGGATCAA+TGG | 0.555540 | 2.4:+14156605 | MS.gene43067:intron |
| CAGATGGTGGATGCTTGGGG+AGG | 0.557421 | 2.4:+14156358 | MS.gene43067:intron |
| CATGTCGAAGGTAGATAAGC+CGG | 0.559207 | 2.4:-14152685 | None:intergenic |
| GGGATGTATTCTAACAACTT+CGG | 0.563425 | 2.4:-14149280 | None:intergenic |
| CGGCTTATCTACCTTCGACA+TGG | 0.566100 | 2.4:+14152686 | MS.gene43067:CDS |
| ATCCCATATAGATCTTCAGC+TGG | 0.568807 | 2.4:-14154807 | None:intergenic |
| AGAATTACTTCCAATGGAGG+AGG | 0.569254 | 2.4:-14151355 | None:intergenic |
| ACGGGCTGAACCGGTTTGGG+CGG | 0.570622 | 2.4:+14149169 | MS.gene43067:CDS |
| AAACACCTCACAGACTTGAA+AGG | 0.575581 | 2.4:+14155614 | MS.gene43067:CDS |
| ATGCAGGTATGGGACAGTAA+TGG | 0.578680 | 2.4:+14156081 | MS.gene43067:intron |
| AGCGAAAGAGGACAAATGGA+CGG | 0.580692 | 2.4:+14149150 | None:intergenic |
| GCTGTAGCAGGATCAATGGT+TGG | 0.583139 | 2.4:+14156609 | MS.gene43067:CDS |
| GCGAAAGAGGACAAATGGAC+GGG | 0.583310 | 2.4:+14149151 | None:intergenic |
| TTGATGCAGTCTCACTAAGT+GGG | 0.585207 | 2.4:+14155052 | MS.gene43067:intron |
| AACAGCATAAGGGAAGCAGC+AGG | 0.585347 | 2.4:+14156708 | MS.gene43067:CDS |
| AAACAAGTATCTACTAAGCA+TGG | 0.586731 | 2.4:+14156415 | MS.gene43067:CDS |
| CTCACAGACTTGAAAGGAGA+AGG | 0.587621 | 2.4:+14155620 | MS.gene43067:CDS |
| ATATACTTCACAGCAACAGT+TGG | 0.588134 | 2.4:-14156448 | None:intergenic |
| GAGACAACATTAATGTGTCA+AGG | 0.588308 | 2.4:+14155111 | MS.gene43067:CDS |
| GTCAAGGAAGAGAATGGACG+TGG | 0.589441 | 2.4:+14155127 | MS.gene43067:CDS |
| ATACCGGAGCATAGCTTCAA+CGG | 0.594485 | 2.4:-14152655 | None:intergenic |
| ATAAGGGAAGCAGCAGGGAA+AGG | 0.597100 | 2.4:+14156714 | MS.gene43067:CDS |
| AATAGAATTACTTCCAATGG+AGG | 0.599379 | 2.4:-14151358 | None:intergenic |
| GTCTACCTGATTGCTCACAA+TGG | 0.599622 | 2.4:-14155792 | None:intergenic |
| TTGATTCGAATTCGATGCAG+TGG | 0.601417 | 2.4:+14152486 | MS.gene43067:CDS |
| TGAAAGTGGAGAATAGGTTG+TGG | 0.603049 | 2.4:-14152404 | None:intergenic |
| CTTCCAATGGAGGAGGAAGA+GGG | 0.609533 | 2.4:-14151348 | None:intergenic |
| ATAAGCCGGAATCAGCATAC+CGG | 0.610129 | 2.4:-14152671 | None:intergenic |
| GTAGAGTTCTTAATGGAATG+TGG | 0.613884 | 2.4:+14152592 | MS.gene43067:CDS |
| TTATTGCAGGTCCAGCAAAA+GGG | 0.615298 | 2.4:-14156147 | None:intergenic |
| ACGCCGTTGAAGCTATGCTC+CGG | 0.621896 | 2.4:+14152652 | MS.gene43067:CDS |
| GTGACTGTGGAGATGAGTAC+AGG | 0.625022 | 2.4:+14156760 | MS.gene43067:CDS |
| CTTCTCCTTTCAAGTCTGTG+AGG | 0.630876 | 2.4:-14155619 | None:intergenic |
| ATGGAACTGAAGCATATCCA+AGG | 0.631653 | 2.4:-14155153 | None:intergenic |
| CTGTTGGTTCTCTGTGAGTG+GGG | 0.634903 | 2.4:-14152456 | None:intergenic |
| TCAATCGAGTTCGTCGTGAG+CGG | 0.637046 | 2.4:+14154835 | MS.gene43067:CDS |
| CTTAAAGTGATTGGTGACTG+TGG | 0.643254 | 2.4:+14156747 | MS.gene43067:CDS |
| GGAAGCAGCAGGGAAAGGCA+AGG | 0.645795 | 2.4:+14156719 | MS.gene43067:CDS |
| GGCAGACAAGTGGTGGTTGG+GGG | 0.649705 | 2.4:+14152613 | MS.gene43067:CDS |
| ACAGCATAAGGGAAGCAGCA+GGG | 0.652098 | 2.4:+14156709 | MS.gene43067:CDS |
| CAGCGAGTGAAACTGAGTAA+CGG | 0.654769 | 2.4:+14152549 | MS.gene43067:CDS |
| CTACTTGTCATCTTAACTGG+TGG | 0.658791 | 2.4:-14155080 | None:intergenic |
| TGTGAAGTATATACTAGACC+AGG | 0.663396 | 2.4:+14156459 | MS.gene43067:CDS |
| ACAGTGATCAGCCATGTCGA+AGG | 0.668855 | 2.4:-14152697 | None:intergenic |
| TGCTGGGTATCCATGGACGG+TGG | 0.672970 | 2.4:+14149218 | MS.gene43067:CDS |
| GGAATGTGGCAGACAAGTGG+TGG | 0.686815 | 2.4:+14152606 | MS.gene43067:CDS |
| AATGGAATGTGGCAGACAAG+TGG | 0.706632 | 2.4:+14152603 | MS.gene43067:CDS |
| AGGTATGGGACAGTAATGGG+TGG | 0.729235 | 2.4:+14156085 | MS.gene43067:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 14149165 | 14156791 | 14149165 | ID=MS.gene43067 |
| chr2.4 | mRNA | 14149165 | 14156791 | 14149165 | ID=MS.gene43067.t1;Parent=MS.gene43067 |
| chr2.4 | exon | 14149165 | 14149319 | 14149165 | ID=MS.gene43067.t1.exon1;Parent=MS.gene43067.t1 |
| chr2.4 | CDS | 14149165 | 14149319 | 14149165 | ID=cds.MS.gene43067.t1;Parent=MS.gene43067.t1 |
| chr2.4 | exon | 14151345 | 14151391 | 14151345 | ID=MS.gene43067.t1.exon2;Parent=MS.gene43067.t1 |
| chr2.4 | CDS | 14151345 | 14151391 | 14151345 | ID=cds.MS.gene43067.t1;Parent=MS.gene43067.t1 |
| chr2.4 | exon | 14152391 | 14152717 | 14152391 | ID=MS.gene43067.t1.exon3;Parent=MS.gene43067.t1 |
| chr2.4 | CDS | 14152391 | 14152717 | 14152391 | ID=cds.MS.gene43067.t1;Parent=MS.gene43067.t1 |
| chr2.4 | exon | 14154802 | 14154886 | 14154802 | ID=MS.gene43067.t1.exon4;Parent=MS.gene43067.t1 |
| chr2.4 | CDS | 14154802 | 14154886 | 14154802 | ID=cds.MS.gene43067.t1;Parent=MS.gene43067.t1 |
| chr2.4 | exon | 14155061 | 14155177 | 14155061 | ID=MS.gene43067.t1.exon5;Parent=MS.gene43067.t1 |
| chr2.4 | CDS | 14155061 | 14155177 | 14155061 | ID=cds.MS.gene43067.t1;Parent=MS.gene43067.t1 |
| chr2.4 | exon | 14155577 | 14155641 | 14155577 | ID=MS.gene43067.t1.exon6;Parent=MS.gene43067.t1 |
| chr2.4 | CDS | 14155577 | 14155641 | 14155577 | ID=cds.MS.gene43067.t1;Parent=MS.gene43067.t1 |
| chr2.4 | exon | 14155720 | 14155808 | 14155720 | ID=MS.gene43067.t1.exon7;Parent=MS.gene43067.t1 |
| chr2.4 | CDS | 14155720 | 14155808 | 14155720 | ID=cds.MS.gene43067.t1;Parent=MS.gene43067.t1 |
| chr2.4 | exon | 14155897 | 14155976 | 14155897 | ID=MS.gene43067.t1.exon8;Parent=MS.gene43067.t1 |
| chr2.4 | CDS | 14155897 | 14155976 | 14155897 | ID=cds.MS.gene43067.t1;Parent=MS.gene43067.t1 |
| chr2.4 | exon | 14156087 | 14156198 | 14156087 | ID=MS.gene43067.t1.exon9;Parent=MS.gene43067.t1 |
| chr2.4 | CDS | 14156087 | 14156198 | 14156087 | ID=cds.MS.gene43067.t1;Parent=MS.gene43067.t1 |
| chr2.4 | exon | 14156361 | 14156480 | 14156361 | ID=MS.gene43067.t1.exon10;Parent=MS.gene43067.t1 |
| chr2.4 | CDS | 14156361 | 14156480 | 14156361 | ID=cds.MS.gene43067.t1;Parent=MS.gene43067.t1 |
| chr2.4 | exon | 14156606 | 14156791 | 14156606 | ID=MS.gene43067.t1.exon11;Parent=MS.gene43067.t1 |
| chr2.4 | CDS | 14156606 | 14156791 | 14156606 | ID=cds.MS.gene43067.t1;Parent=MS.gene43067.t1 |
| Gene Sequence |
| Protein sequence |
