Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52448.t1 | RHN45282.1 | 95.1 | 204 | 9 | 1 | 30 | 232 | 225 | 428 | 3.60E-114 | 421 |
| MS.gene52448.t1 | RHN45282.1 | 93.5 | 31 | 2 | 0 | 1 | 31 | 31 | 61 | 5.50E-06 | 61.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52448.t1 | A0A396GW08 | 95.1 | 204 | 9 | 1 | 30 | 232 | 225 | 428 | 2.6e-114 | 421.0 |
| MS.gene52448.t1 | A0A396GW08 | 93.5 | 31 | 2 | 0 | 1 | 31 | 31 | 61 | 4.0e-06 | 61.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene52448 | 0.807303 | 5.40E-50 | -1.69E-46 |
| MS.gene049151 | MS.gene52448 | 0.824165 | 9.35E-54 | -1.69E-46 |
| MS.gene049159 | MS.gene52448 | 0.835897 | 1.28E-56 | -1.69E-46 |
| MS.gene049230 | MS.gene52448 | 0.856644 | 2.80E-62 | -1.69E-46 |
| MS.gene049378 | MS.gene52448 | 0.849735 | 2.67E-60 | -1.69E-46 |
| MS.gene049424 | MS.gene52448 | 0.814255 | 1.69E-51 | -1.69E-46 |
| MS.gene049435 | MS.gene52448 | 0.807304 | 5.40E-50 | -1.69E-46 |
| MS.gene049669 | MS.gene52448 | 0.806827 | 6.81E-50 | -1.69E-46 |
| MS.gene050105 | MS.gene52448 | 0.834479 | 2.93E-56 | -1.69E-46 |
| MS.gene050226 | MS.gene52448 | 0.840557 | 8.10E-58 | -1.69E-46 |
| MS.gene050227 | MS.gene52448 | 0.839597 | 1.44E-57 | -1.69E-46 |
| MS.gene050228 | MS.gene52448 | 0.834889 | 2.31E-56 | -1.69E-46 |
| MS.gene050442 | MS.gene52448 | 0.839002 | 2.06E-57 | -1.69E-46 |
| MS.gene050605 | MS.gene52448 | 0.858198 | 9.71E-63 | -1.69E-46 |
| MS.gene050623 | MS.gene52448 | -0.846309 | 2.35E-59 | -1.69E-46 |
| MS.gene050642 | MS.gene52448 | 0.834587 | 2.75E-56 | -1.69E-46 |
| MS.gene050680 | MS.gene52448 | 0.863722 | 2.03E-64 | -1.69E-46 |
| MS.gene050719 | MS.gene52448 | 0.804694 | 1.91E-49 | -1.69E-46 |
| MS.gene050721 | MS.gene52448 | 0.801833 | 7.47E-49 | -1.69E-46 |
| MS.gene050724 | MS.gene52448 | 0.810353 | 1.20E-50 | -1.69E-46 |
| MS.gene050750 | MS.gene52448 | 0.836746 | 7.81E-57 | -1.69E-46 |
| MS.gene050826 | MS.gene52448 | 0.816796 | 4.60E-52 | -1.69E-46 |
| MS.gene050953 | MS.gene52448 | 0.850332 | 1.82E-60 | -1.69E-46 |
| MS.gene050987 | MS.gene52448 | 0.821118 | 4.79E-53 | -1.69E-46 |
| MS.gene051122 | MS.gene52448 | 0.83563 | 1.50E-56 | -1.69E-46 |
| MS.gene051243 | MS.gene52448 | 0.812241 | 4.68E-51 | -1.69E-46 |
| MS.gene051368 | MS.gene52448 | 0.82274 | 2.01E-53 | -1.69E-46 |
| MS.gene051370 | MS.gene52448 | 0.81045 | 1.15E-50 | -1.69E-46 |
| MS.gene051452 | MS.gene52448 | 0.841348 | 5.02E-58 | -1.69E-46 |
| MS.gene051535 | MS.gene52448 | 0.827825 | 1.26E-54 | -1.69E-46 |
| MS.gene051924 | MS.gene52448 | -0.803304 | 3.72E-49 | -1.69E-46 |
| MS.gene051983 | MS.gene52448 | 0.855012 | 8.39E-62 | -1.69E-46 |
| MS.gene052012 | MS.gene52448 | 0.821922 | 3.12E-53 | -1.69E-46 |
| MS.gene052077 | MS.gene52448 | 0.803861 | 2.85E-49 | -1.69E-46 |
| MS.gene052176 | MS.gene52448 | 0.840932 | 6.46E-58 | -1.69E-46 |
| MS.gene052309 | MS.gene52448 | -0.812538 | 4.03E-51 | -1.69E-46 |
| MS.gene052333 | MS.gene52448 | 0.83832 | 3.08E-57 | -1.69E-46 |
| MS.gene052389 | MS.gene52448 | 0.805434 | 1.34E-49 | -1.69E-46 |
| MS.gene052426 | MS.gene52448 | 0.866874 | 2.07E-65 | -1.69E-46 |
| MS.gene052586 | MS.gene52448 | 0.800997 | 1.11E-48 | -1.69E-46 |
| MS.gene052674 | MS.gene52448 | 0.81191 | 5.53E-51 | -1.69E-46 |
| MS.gene052675 | MS.gene52448 | 0.810067 | 1.39E-50 | -1.69E-46 |
| MS.gene052677 | MS.gene52448 | 0.818412 | 1.99E-52 | -1.69E-46 |
| MS.gene052954 | MS.gene52448 | 0.837876 | 4.01E-57 | -1.69E-46 |
| MS.gene053006 | MS.gene52448 | 0.801613 | 8.29E-49 | -1.69E-46 |
| MS.gene053008 | MS.gene52448 | 0.823009 | 1.74E-53 | -1.69E-46 |
| MS.gene053166 | MS.gene52448 | 0.863624 | 2.18E-64 | -1.69E-46 |
| MS.gene053188 | MS.gene52448 | 0.837968 | 3.80E-57 | -1.69E-46 |
| MS.gene053216 | MS.gene52448 | 0.846837 | 1.69E-59 | -1.69E-46 |
| MS.gene053494 | MS.gene52448 | 0.857889 | 1.20E-62 | -1.69E-46 |
| MS.gene05415 | MS.gene52448 | 0.818685 | 1.72E-52 | -1.69E-46 |
| MS.gene054236 | MS.gene52448 | 0.802512 | 5.42E-49 | -1.69E-46 |
| MS.gene054379 | MS.gene52448 | 0.821657 | 3.59E-53 | -1.69E-46 |
| MS.gene054405 | MS.gene52448 | 0.843294 | 1.53E-58 | -1.69E-46 |
| MS.gene054468 | MS.gene52448 | 0.821955 | 3.07E-53 | -1.69E-46 |
| MS.gene054479 | MS.gene52448 | 0.827074 | 1.91E-54 | -1.69E-46 |
| MS.gene054537 | MS.gene52448 | 0.826546 | 2.56E-54 | -1.69E-46 |
| MS.gene054559 | MS.gene52448 | 0.827719 | 1.34E-54 | -1.69E-46 |
| MS.gene054657 | MS.gene52448 | 0.841752 | 3.93E-58 | -1.69E-46 |
| MS.gene054658 | MS.gene52448 | 0.816497 | 5.36E-52 | -1.69E-46 |
| MS.gene054930 | MS.gene52448 | 0.844345 | 8.01E-59 | -1.69E-46 |
| MS.gene054994 | MS.gene52448 | 0.801143 | 1.03E-48 | -1.69E-46 |
| MS.gene05510 | MS.gene52448 | 0.909229 | 7.17E-82 | -1.69E-46 |
| MS.gene055222 | MS.gene52448 | 0.809553 | 1.79E-50 | -1.69E-46 |
| MS.gene055367 | MS.gene52448 | 0.806841 | 6.76E-50 | -1.69E-46 |
| MS.gene055441 | MS.gene52448 | 0.806063 | 9.87E-50 | -1.69E-46 |
| MS.gene055623 | MS.gene52448 | 0.851398 | 9.11E-61 | -1.69E-46 |
| MS.gene055701 | MS.gene52448 | 0.908114 | 2.43E-81 | -1.69E-46 |
| MS.gene055818 | MS.gene52448 | 0.811582 | 6.51E-51 | -1.69E-46 |
| MS.gene055926 | MS.gene52448 | 0.810258 | 1.26E-50 | -1.69E-46 |
| MS.gene05604 | MS.gene52448 | 0.801243 | 9.87E-49 | -1.69E-46 |
| MS.gene056087 | MS.gene52448 | 0.806615 | 7.55E-50 | -1.69E-46 |
| MS.gene056480 | MS.gene52448 | 0.8171 | 3.93E-52 | -1.69E-46 |
| MS.gene056506 | MS.gene52448 | 0.855297 | 6.93E-62 | -1.69E-46 |
| MS.gene056873 | MS.gene52448 | 0.818222 | 2.19E-52 | -1.69E-46 |
| MS.gene056979 | MS.gene52448 | 0.83993 | 1.18E-57 | -1.69E-46 |
| MS.gene057026 | MS.gene52448 | 0.824463 | 7.96E-54 | -1.69E-46 |
| MS.gene057060 | MS.gene52448 | 0.803958 | 2.72E-49 | -1.69E-46 |
| MS.gene057156 | MS.gene52448 | -0.824278 | 8.80E-54 | -1.69E-46 |
| MS.gene057194 | MS.gene52448 | 0.824195 | 9.21E-54 | -1.69E-46 |
| MS.gene057394 | MS.gene52448 | 0.814414 | 1.56E-51 | -1.69E-46 |
| MS.gene05761 | MS.gene52448 | 0.84477 | 6.15E-59 | -1.69E-46 |
| MS.gene057750 | MS.gene52448 | 0.808006 | 3.83E-50 | -1.69E-46 |
| MS.gene057869 | MS.gene52448 | 0.802093 | 6.61E-49 | -1.69E-46 |
| MS.gene05795 | MS.gene52448 | 0.805846 | 1.10E-49 | -1.69E-46 |
| MS.gene058139 | MS.gene52448 | 0.801032 | 1.09E-48 | -1.69E-46 |
| MS.gene058146 | MS.gene52448 | 0.857946 | 1.15E-62 | -1.69E-46 |
| MS.gene058223 | MS.gene52448 | -0.813492 | 2.49E-51 | -1.69E-46 |
| MS.gene058399 | MS.gene52448 | 0.838677 | 2.50E-57 | -1.69E-46 |
| MS.gene058435 | MS.gene52448 | 0.828029 | 1.13E-54 | -1.69E-46 |
| MS.gene058548 | MS.gene52448 | 0.829417 | 5.21E-55 | -1.69E-46 |
| MS.gene058549 | MS.gene52448 | 0.813251 | 2.81E-51 | -1.69E-46 |
| MS.gene058595 | MS.gene52448 | 0.857941 | 1.16E-62 | -1.69E-46 |
| MS.gene058979 | MS.gene52448 | 0.810161 | 1.32E-50 | -1.69E-46 |
| MS.gene059128 | MS.gene52448 | 0.811969 | 5.37E-51 | -1.69E-46 |
| MS.gene059161 | MS.gene52448 | 0.847926 | 8.49E-60 | -1.69E-46 |
| MS.gene059249 | MS.gene52448 | 0.808543 | 2.94E-50 | -1.69E-46 |
| MS.gene059317 | MS.gene52448 | 0.802562 | 5.29E-49 | -1.69E-46 |
| MS.gene059382 | MS.gene52448 | 0.803643 | 3.16E-49 | -1.69E-46 |
| MS.gene059569 | MS.gene52448 | 0.80246 | 5.55E-49 | -1.69E-46 |
| MS.gene059609 | MS.gene52448 | 0.82199 | 3.01E-53 | -1.69E-46 |
| MS.gene059710 | MS.gene52448 | 0.806143 | 9.49E-50 | -1.69E-46 |
| MS.gene05979 | MS.gene52448 | 0.831053 | 2.08E-55 | -1.69E-46 |
| MS.gene059830 | MS.gene52448 | 0.82063 | 6.20E-53 | -1.69E-46 |
| MS.gene059952 | MS.gene52448 | 0.807848 | 4.14E-50 | -1.69E-46 |
| MS.gene060011 | MS.gene52448 | 0.837377 | 5.39E-57 | -1.69E-46 |
| MS.gene060084 | MS.gene52448 | 0.80936 | 1.97E-50 | -1.69E-46 |
| MS.gene060297 | MS.gene52448 | 0.841356 | 4.99E-58 | -1.69E-46 |
| MS.gene060322 | MS.gene52448 | 0.83171 | 1.43E-55 | -1.69E-46 |
| MS.gene060572 | MS.gene52448 | 0.81576 | 7.84E-52 | -1.69E-46 |
| MS.gene060586 | MS.gene52448 | 0.801814 | 7.54E-49 | -1.69E-46 |
| MS.gene060683 | MS.gene52448 | 0.850741 | 1.40E-60 | -1.69E-46 |
| MS.gene060685 | MS.gene52448 | 0.844356 | 7.95E-59 | -1.69E-46 |
| MS.gene060802 | MS.gene52448 | 0.84914 | 3.91E-60 | -1.69E-46 |
| MS.gene060803 | MS.gene52448 | 0.845629 | 3.60E-59 | -1.69E-46 |
| MS.gene060851 | MS.gene52448 | 0.80539 | 1.37E-49 | -1.69E-46 |
| MS.gene060852 | MS.gene52448 | 0.807242 | 5.56E-50 | -1.69E-46 |
| MS.gene060940 | MS.gene52448 | 0.827561 | 1.46E-54 | -1.69E-46 |
| MS.gene060942 | MS.gene52448 | 0.855863 | 4.74E-62 | -1.69E-46 |
| MS.gene060943 | MS.gene52448 | 0.822272 | 2.59E-53 | -1.69E-46 |
| MS.gene060998 | MS.gene52448 | 0.866179 | 3.44E-65 | -1.69E-46 |
| MS.gene061002 | MS.gene52448 | 0.836073 | 1.16E-56 | -1.69E-46 |
| MS.gene061114 | MS.gene52448 | -0.801804 | 7.58E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52448.t1 | MTR_0064s0160 | 69.082 | 207 | 60 | 3 | 30 | 232 | 238 | 444 | 1.73e-94 | 284 |
| MS.gene52448.t1 | MTR_1g061330 | 69.268 | 205 | 56 | 4 | 29 | 228 | 175 | 377 | 4.42e-92 | 276 |
| MS.gene52448.t1 | MTR_5g048160 | 57.576 | 198 | 66 | 7 | 29 | 210 | 196 | 391 | 1.31e-61 | 197 |
| MS.gene52448.t1 | MTR_0115s0020 | 56.784 | 199 | 67 | 8 | 29 | 210 | 202 | 398 | 9.69e-61 | 196 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 43 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAGATATCTTCAGGTTTC+TGG | 0.094666 | 7.2:-60630769 | MS.gene52448:CDS |
| CATTTCTCTAATCCCTTTAC+AGG | 0.173221 | 7.2:+60630964 | None:intergenic |
| TGGTAACTTTATGAGGATTT+TGG | 0.244298 | 7.2:+60631785 | None:intergenic |
| TTTGGTTGATGAAAGATTAT+TGG | 0.255893 | 7.2:-60630933 | MS.gene52448:CDS |
| ATGGGAGTAATAGGTTTCTT+TGG | 0.307329 | 7.2:-60630840 | MS.gene52448:CDS |
| AATAAGAGCTGCTAGATATA+TGG | 0.316809 | 7.2:-60630734 | MS.gene52448:CDS |
| GAATTAGAATGCTCAATCTT+TGG | 0.332900 | 7.2:+60631054 | None:intergenic |
| CTATTGCTGGTAACTTTATG+AGG | 0.343221 | 7.2:+60631778 | None:intergenic |
| ACATGGTCGATGAACGGTTT+AGG | 0.346638 | 7.2:-60631089 | MS.gene52448:CDS |
| GTCATTGTTTATCCTGTAAA+GGG | 0.361651 | 7.2:-60630976 | MS.gene52448:CDS |
| CAGTGATTTATAAGCTTGTT+GGG | 0.370830 | 7.2:-60630867 | MS.gene52448:CDS |
| TAGAGAAATGGTTTGATGTT+TGG | 0.375876 | 7.2:-60630951 | MS.gene52448:CDS |
| TTGGTTGATGAAAGATTATT+GGG | 0.379665 | 7.2:-60630932 | MS.gene52448:CDS |
| CCAGTGATTTATAAGCTTGT+TGG | 0.381944 | 7.2:-60630868 | MS.gene52448:CDS |
| TTTGATGAATCTGATACTAT+TGG | 0.385243 | 7.2:-60631000 | MS.gene52448:CDS |
| TGGAAATATAAGATATCTTC+AGG | 0.389661 | 7.2:-60630776 | MS.gene52448:CDS |
| GCAAATCCATTTGCAAATCA+TGG | 0.393739 | 7.2:-60631743 | MS.gene52448:intron |
| CTGTAAAGGGATTAGAGAAA+TGG | 0.411920 | 7.2:-60630963 | MS.gene52448:CDS |
| ATGAAAGATTATTGGGATGA+AGG | 0.426247 | 7.2:-60630925 | MS.gene52448:CDS |
| TGTCATTGTTTATCCTGTAA+AGG | 0.431563 | 7.2:-60630977 | MS.gene52448:CDS |
| ATTATTGGGATGAAGGGTCT+TGG | 0.438909 | 7.2:-60630918 | MS.gene52448:CDS |
| TGGATCAAGTTATATAGTAT+TGG | 0.438963 | 7.2:-60630898 | MS.gene52448:CDS |
| TGCGAAATTGTTGTCATTGG+TGG | 0.446619 | 7.2:-60631155 | MS.gene52448:CDS |
| ATCTAACCATGATTTGCAAA+TGG | 0.451488 | 7.2:+60631737 | None:intergenic |
| GCGAAATTGTTGTCATTGGT+GGG | 0.458301 | 7.2:-60631154 | MS.gene52448:CDS |
| TTGTGCGAAATTGTTGTCAT+TGG | 0.471678 | 7.2:-60631158 | MS.gene52448:CDS |
| GAAAGATAGCAATGAGAGGT+TGG | 0.477079 | 7.2:-60630818 | MS.gene52448:CDS |
| ATAGTATCAGATTCATCAAA+AGG | 0.488870 | 7.2:+60631003 | None:intergenic |
| GAAGAACCCCAAATATCAAA+AGG | 0.492126 | 7.2:+60631195 | None:intergenic |
| ATTGAGCATTCTAATTCCTC+AGG | 0.497942 | 7.2:-60631048 | MS.gene52448:CDS |
| TGAAAGATTATTGGGATGAA+GGG | 0.520538 | 7.2:-60630924 | MS.gene52448:CDS |
| AAAAGGAAGAGGTAAATCTT+CGG | 0.527250 | 7.2:+60631212 | None:intergenic |
| CATTCGACATGGTCGATGAA+CGG | 0.531410 | 7.2:-60631095 | MS.gene52448:CDS |
| AGCTTATAAATCACTGGCAC+AGG | 0.536304 | 7.2:+60630874 | None:intergenic |
| TTGGTGTTGTATGAAGTTGA+GGG | 0.539970 | 7.2:-60630799 | MS.gene52448:CDS |
| CCAACAAGCTTATAAATCAC+TGG | 0.548782 | 7.2:+60630868 | None:intergenic |
| CGAAATTGTTGTCATTGGTG+GGG | 0.549815 | 7.2:-60631153 | MS.gene52448:CDS |
| CTTCAAAGAGGAAATGAAAG+TGG | 0.549958 | 7.2:-60630697 | MS.gene52448:CDS |
| GTTGGTGTTGTATGAAGTTG+AGG | 0.558932 | 7.2:-60630800 | MS.gene52448:CDS |
| CCCCAAATATCAAAAGGAAG+AGG | 0.561584 | 7.2:+60631201 | None:intergenic |
| AGTCTTGTTTCACTTCAAAG+AGG | 0.582727 | 7.2:-60630709 | MS.gene52448:CDS |
| GTGTTGTATGAAGTTGAGGG+TGG | 0.632253 | 7.2:-60630796 | MS.gene52448:CDS |
| TTTGGAAAGATAGCAATGAG+AGG | 0.639164 | 7.2:-60630822 | MS.gene52448:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGTAATTAGTAATAAATTG+AGG | + | chr7.2:60630753-60630772 | None:intergenic | 15.0% |
| !!! | ACTTTATAATCATTAGTTTT+AGG | + | chr7.2:60631113-60631132 | None:intergenic | 15.0% |
| !!! | AGAAGAAATAATATGTTTTT+TGG | + | chr7.2:60630880-60630899 | None:intergenic | 15.0% |
| !!! | ATAGTTTTATTTCAAATTCT+TGG | - | chr7.2:60631204-60631223 | MS.gene52448:CDS | 15.0% |
| !!! | CTTTATAATCATTAGTTTTA+GGG | + | chr7.2:60631112-60631131 | None:intergenic | 15.0% |
| !!! | GAAGAAATAATATGTTTTTT+GGG | + | chr7.2:60630879-60630898 | None:intergenic | 15.0% |
| !!! | TATTCTTTTAGTGAATATTA+TGG | - | chr7.2:60631074-60631093 | MS.gene52448:CDS | 15.0% |
| !! | AAATATTGGACTGAAATAAT+GGG | - | chr7.2:60630939-60630958 | MS.gene52448:CDS | 20.0% |
| !! | TAAATATTGGACTGAAATAA+TGG | - | chr7.2:60630938-60630957 | MS.gene52448:CDS | 20.0% |
| !! | TTATTTCAGTCCAATATTTA+TGG | + | chr7.2:60630938-60630957 | None:intergenic | 20.0% |
| !!! | TTTAGTGAATATTATGGTTT+TGG | - | chr7.2:60631080-60631099 | MS.gene52448:CDS | 20.0% |
| ! | ACAATTCTGACCATAAATAT+TGG | - | chr7.2:60630925-60630944 | MS.gene52448:CDS | 25.0% |
| ! | ATAGTATCAGATTCATCAAA+AGG | + | chr7.2:60631452-60631471 | None:intergenic | 25.0% |
| ! | CTAAAAGAATAAAAACCTTG+AGG | + | chr7.2:60631065-60631084 | None:intergenic | 25.0% |
| ! | TGGAAATATAAGATATCTTC+AGG | - | chr7.2:60631676-60631695 | MS.gene52448:intron | 25.0% |
| ! | TGGATCAAGTTATATAGTAT+TGG | - | chr7.2:60631554-60631573 | MS.gene52448:intron | 25.0% |
| ! | TTTGATGAATCTGATACTAT+TGG | - | chr7.2:60631452-60631471 | MS.gene52448:intron | 25.0% |
| !! | ATTTTGGATACTAAATCTTG+TGG | + | chr7.2:60630654-60630673 | None:intergenic | 25.0% |
| !! | TCAATGTTTTTCTTGTAGTT+TGG | - | chr7.2:60631781-60631800 | MS.gene52448:CDS | 25.0% |
| !!! | GTTTTATTTCAAATTCTTGG+AGG | - | chr7.2:60631207-60631226 | MS.gene52448:CDS | 25.0% |
| !!! | TTGGTTGATGAAAGATTATT+GGG | - | chr7.2:60631520-60631539 | MS.gene52448:intron | 25.0% |
| !!! | TTTGGTTGATGAAAGATTAT+TGG | - | chr7.2:60631519-60631538 | MS.gene52448:intron | 25.0% |
| AAAAGGAAGAGGTAAATCTT+CGG | + | chr7.2:60631243-60631262 | None:intergenic | 30.0% | |
| AAACAGATGAGAGACAAAAT+GGG | - | chr7.2:60631162-60631181 | MS.gene52448:CDS | 30.0% | |
| AATAAGAGCTGCTAGATATA+TGG | - | chr7.2:60631718-60631737 | MS.gene52448:intron | 30.0% | |
| AATGGGATATACTTTCTAGA+AGG | - | chr7.2:60630969-60630988 | MS.gene52448:CDS | 30.0% | |
| ACCATAAACTGTATCAAAGA+TGG | + | chr7.2:60631017-60631036 | None:intergenic | 30.0% | |
| ATGAAAGATTATTGGGATGA+AGG | - | chr7.2:60631527-60631546 | MS.gene52448:intron | 30.0% | |
| CAGAATTGTATTCATAAGGT+GGG | + | chr7.2:60630914-60630933 | None:intergenic | 30.0% | |
| CTTACATTTCACATCTTTCT+TGG | - | chr7.2:60630841-60630860 | MS.gene52448:CDS | 30.0% | |
| GAATTAGAATGCTCAATCTT+TGG | + | chr7.2:60631401-60631420 | None:intergenic | 30.0% | |
| GTCATTGTTTATCCTGTAAA+GGG | - | chr7.2:60631476-60631495 | MS.gene52448:intron | 30.0% | |
| GTTGAAAGATCTTTGGTTAA+AGG | - | chr7.2:60631139-60631158 | MS.gene52448:CDS | 30.0% | |
| TAGAGAAATGGTTTGATGTT+TGG | - | chr7.2:60631501-60631520 | MS.gene52448:intron | 30.0% | |
| TCAGAATTGTATTCATAAGG+TGG | + | chr7.2:60630915-60630934 | None:intergenic | 30.0% | |
| TCCATCTTTGATACAGTTTA+TGG | - | chr7.2:60631013-60631032 | MS.gene52448:CDS | 30.0% | |
| TGAAAGATTATTGGGATGAA+GGG | - | chr7.2:60631528-60631547 | MS.gene52448:intron | 30.0% | |
| TGACTAAAAGATGATCTTGT+TGG | + | chr7.2:60630791-60630810 | None:intergenic | 30.0% | |
| TGGTCAGAATTGTATTCATA+AGG | + | chr7.2:60630918-60630937 | None:intergenic | 30.0% | |
| TGTCATTGTTTATCCTGTAA+AGG | - | chr7.2:60631475-60631494 | MS.gene52448:intron | 30.0% | |
| TTGTTGTGTTGAAAGATCTT+TGG | - | chr7.2:60631132-60631151 | MS.gene52448:CDS | 30.0% | |
| ! | ACCTCTTCCTTTTGATATTT+GGG | - | chr7.2:60631250-60631269 | MS.gene52448:intron | 30.0% |
| ! | AGAAAGTATATCCCATTACA+AGG | + | chr7.2:60630966-60630985 | None:intergenic | 30.0% |
| ! | ATAAGATATCTTCAGGTTTC+TGG | - | chr7.2:60631683-60631702 | MS.gene52448:intron | 30.0% |
| ! | ATCTAACCATGATTTGCAAA+TGG | + | chr7.2:60630718-60630737 | None:intergenic | 30.0% |
| ! | CAGTGATTTATAAGCTTGTT+GGG | - | chr7.2:60631585-60631604 | MS.gene52448:intron | 30.0% |
| ! | GATGGATTCATCATTACATT+TGG | + | chr7.2:60630999-60631018 | None:intergenic | 30.0% |
| ! | TACCTCTTCCTTTTGATATT+TGG | - | chr7.2:60631249-60631268 | MS.gene52448:intron | 30.0% |
| ! | TGGTAACTTTATGAGGATTT+TGG | + | chr7.2:60630670-60630689 | None:intergenic | 30.0% |
| !! | AAATAATGGGTCCTTGTAAT+GGG | - | chr7.2:60630952-60630971 | MS.gene52448:CDS | 30.0% |
| !! | CATTTTGATAACTCTATTGC+TGG | + | chr7.2:60630690-60630709 | None:intergenic | 30.0% |
| !!! | ATAAGCTTGTTGGGTTTTAT+GGG | - | chr7.2:60631594-60631613 | MS.gene52448:intron | 30.0% |
| !!! | GGTTTTGTTGATGGAAATAT+AGG | - | chr7.2:60631320-60631339 | MS.gene52448:intron | 30.0% |
| !!! | TATAAGCTTGTTGGGTTTTA+TGG | - | chr7.2:60631593-60631612 | MS.gene52448:intron | 30.0% |
| !!! | TGTTTTAAAACATTCACCTG+AGG | + | chr7.2:60631423-60631442 | None:intergenic | 30.0% |
| ATGAGAGACAAAATGGGTAT+TGG | - | chr7.2:60631168-60631187 | MS.gene52448:CDS | 35.0% | |
| ATGGGAGTAATAGGTTTCTT+TGG | - | chr7.2:60631612-60631631 | MS.gene52448:intron | 35.0% | |
| ATTGAGCATTCTAATTCCTC+AGG | - | chr7.2:60631404-60631423 | MS.gene52448:intron | 35.0% | |
| CATTTCTCTAATCCCTTTAC+AGG | + | chr7.2:60631491-60631510 | None:intergenic | 35.0% | |
| CCAACAAGCTTATAAATCAC+TGG | + | chr7.2:60631587-60631606 | None:intergenic | 35.0% | |
| CCAGTGATTTATAAGCTTGT+TGG | - | chr7.2:60631584-60631603 | MS.gene52448:intron | 35.0% | |
| CTATTGCTGGTAACTTTATG+AGG | + | chr7.2:60630677-60630696 | None:intergenic | 35.0% | |
| CTGTAAAGGGATTAGAGAAA+TGG | - | chr7.2:60631489-60631508 | MS.gene52448:intron | 35.0% | |
| CTTCAAAGAGGAAATGAAAG+TGG | - | chr7.2:60631755-60631774 | MS.gene52448:CDS | 35.0% | |
| GAAACAGATGAGAGACAAAA+TGG | - | chr7.2:60631161-60631180 | MS.gene52448:CDS | 35.0% | |
| GAAGAACCCCAAATATCAAA+AGG | + | chr7.2:60631260-60631279 | None:intergenic | 35.0% | |
| GCAAATCCATTTGCAAATCA+TGG | - | chr7.2:60630709-60630728 | MS.gene52448:CDS | 35.0% | |
| TTGTGCGAAATTGTTGTCAT+TGG | - | chr7.2:60631294-60631313 | MS.gene52448:intron | 35.0% | |
| TTTGGAAAGATAGCAATGAG+AGG | - | chr7.2:60631630-60631649 | MS.gene52448:intron | 35.0% | |
| ! | ATTCGTAGACCTTTTCTTTG+TGG | - | chr7.2:60630810-60630829 | MS.gene52448:CDS | 35.0% |
| ! | CCTCTTCCTTTTGATATTTG+GGG | - | chr7.2:60631251-60631270 | MS.gene52448:intron | 35.0% |
| !! | AGTCTTGTTTCACTTCAAAG+AGG | - | chr7.2:60631743-60631762 | MS.gene52448:intron | 35.0% |
| !! | GAAATAATGGGTCCTTGTAA+TGG | - | chr7.2:60630951-60630970 | MS.gene52448:CDS | 35.0% |
| !! | TTGGGTTTTATGGGAGTAAT+AGG | - | chr7.2:60631603-60631622 | MS.gene52448:intron | 35.0% |
| !! | TTGGTGTTGTATGAAGTTGA+GGG | - | chr7.2:60631653-60631672 | MS.gene52448:intron | 35.0% |
| !!! | GTTTTGAGACCACAAAGAAA+AGG | + | chr7.2:60630822-60630841 | None:intergenic | 35.0% |
| !!! | TGTTGTTTTAGCATTCGACA+TGG | - | chr7.2:60631346-60631365 | MS.gene52448:intron | 35.0% |
| AACCTTGAGGAGCTGTAAAA+TGG | + | chr7.2:60631052-60631071 | None:intergenic | 40.0% | |
| ACCTTGAGGAGCTGTAAAAT+GGG | + | chr7.2:60631051-60631070 | None:intergenic | 40.0% | |
| AGCTTATAAATCACTGGCAC+AGG | + | chr7.2:60631581-60631600 | None:intergenic | 40.0% | |
| ATTATTGGGATGAAGGGTCT+TGG | - | chr7.2:60631534-60631553 | MS.gene52448:intron | 40.0% | |
| CCCCAAATATCAAAAGGAAG+AGG | + | chr7.2:60631254-60631273 | None:intergenic | 40.0% | |
| CGAAATTGTTGTCATTGGTG+GGG | - | chr7.2:60631299-60631318 | MS.gene52448:intron | 40.0% | |
| GAAAGATAGCAATGAGAGGT+TGG | - | chr7.2:60631634-60631653 | MS.gene52448:intron | 40.0% | |
| GCGAAATTGTTGTCATTGGT+GGG | - | chr7.2:60631298-60631317 | MS.gene52448:intron | 40.0% | |
| TGCGAAATTGTTGTCATTGG+TGG | - | chr7.2:60631297-60631316 | MS.gene52448:intron | 40.0% | |
| ! | ATGATCCTCTTTTGAACCTG+GGG | - | chr7.2:60631807-60631826 | MS.gene52448:CDS | 40.0% |
| ! | CATGATCCTCTTTTGAACCT+GGG | - | chr7.2:60631806-60631825 | MS.gene52448:CDS | 40.0% |
| ! | TCATGATCCTCTTTTGAACC+TGG | - | chr7.2:60631805-60631824 | MS.gene52448:CDS | 40.0% |
| !! | GTTGGTGTTGTATGAAGTTG+AGG | - | chr7.2:60631652-60631671 | MS.gene52448:intron | 40.0% |
| ACATGGTCGATGAACGGTTT+AGG | - | chr7.2:60631363-60631382 | MS.gene52448:intron | 45.0% | |
| CATTCGACATGGTCGATGAA+CGG | - | chr7.2:60631357-60631376 | MS.gene52448:intron | 45.0% | |
| GGAGCTGTAAAATGGGATTG+AGG | + | chr7.2:60631044-60631063 | None:intergenic | 45.0% | |
| GTGTTGTATGAAGTTGAGGG+TGG | - | chr7.2:60631656-60631675 | MS.gene52448:intron | 45.0% | |
| ! | TCCCATTTTACAGCTCCTCA+AGG | - | chr7.2:60631047-60631066 | MS.gene52448:CDS | 45.0% |
| ! | TGATCCTCTTTTGAACCTGG+GGG | - | chr7.2:60631808-60631827 | MS.gene52448:CDS | 45.0% |
| !!! | CATTGGTGGGGTTTTGTTGA+TGG | - | chr7.2:60631311-60631330 | MS.gene52448:intron | 45.0% |
| TACTCCCCCAGGTTCAAAAG+AGG | + | chr7.2:60631815-60631834 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 60630639 | 60631835 | 60630639 | ID=MS.gene52448 |
| chr7.2 | mRNA | 60630639 | 60631835 | 60630639 | ID=MS.gene52448.t1;Parent=MS.gene52448 |
| chr7.2 | exon | 60631744 | 60631835 | 60631744 | ID=MS.gene52448.t1.exon1;Parent=MS.gene52448.t1 |
| chr7.2 | CDS | 60631744 | 60631835 | 60631744 | ID=cds.MS.gene52448.t1;Parent=MS.gene52448.t1 |
| chr7.2 | exon | 60630639 | 60631245 | 60630639 | ID=MS.gene52448.t1.exon2;Parent=MS.gene52448.t1 |
| chr7.2 | CDS | 60630639 | 60631245 | 60630639 | ID=cds.MS.gene52448.t1;Parent=MS.gene52448.t1 |
| Gene Sequence |
| Protein sequence |
