Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57942.t1 | XP_003610222.1 | 95.8 | 143 | 5 | 1 | 3 | 145 | 2 | 143 | 4.50E-67 | 263.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57942.t1 | G7JEA5 | 95.8 | 143 | 5 | 1 | 3 | 145 | 2 | 143 | 3.3e-67 | 263.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene57942 | 0.818572 | 1.83E-52 | -1.69E-46 |
| MS.gene049171 | MS.gene57942 | 0.837211 | 5.94E-57 | -1.69E-46 |
| MS.gene049173 | MS.gene57942 | 0.837145 | 6.18E-57 | -1.69E-46 |
| MS.gene049217 | MS.gene57942 | 0.857611 | 1.45E-62 | -1.69E-46 |
| MS.gene049222 | MS.gene57942 | 0.846684 | 1.86E-59 | -1.69E-46 |
| MS.gene049285 | MS.gene57942 | 0.867642 | 1.18E-65 | -1.69E-46 |
| MS.gene049320 | MS.gene57942 | 0.869775 | 2.41E-66 | -1.69E-46 |
| MS.gene049427 | MS.gene57942 | 0.872271 | 3.61E-67 | -1.69E-46 |
| MS.gene049609 | MS.gene57942 | 0.842404 | 2.64E-58 | -1.69E-46 |
| MS.gene049661 | MS.gene57942 | 0.806297 | 8.81E-50 | -1.69E-46 |
| MS.gene049760 | MS.gene57942 | 0.805818 | 1.11E-49 | -1.69E-46 |
| MS.gene049805 | MS.gene57942 | 0.856445 | 3.20E-62 | -1.69E-46 |
| MS.gene050076 | MS.gene57942 | 0.818489 | 1.91E-52 | -1.69E-46 |
| MS.gene050163 | MS.gene57942 | 0.889814 | 1.73E-73 | -1.69E-46 |
| MS.gene050165 | MS.gene57942 | 0.874481 | 6.53E-68 | -1.69E-46 |
| MS.gene050333 | MS.gene57942 | 0.872976 | 2.10E-67 | -1.69E-46 |
| MS.gene050432 | MS.gene57942 | 0.842402 | 2.64E-58 | -1.69E-46 |
| MS.gene050504 | MS.gene57942 | 0.835741 | 1.41E-56 | -1.69E-46 |
| MS.gene050518 | MS.gene57942 | 0.849084 | 4.06E-60 | -1.69E-46 |
| MS.gene050593 | MS.gene57942 | 0.822924 | 1.83E-53 | -1.69E-46 |
| MS.gene050612 | MS.gene57942 | 0.837066 | 6.47E-57 | -1.69E-46 |
| MS.gene050675 | MS.gene57942 | 0.825261 | 5.16E-54 | -1.69E-46 |
| MS.gene050699 | MS.gene57942 | 0.839056 | 1.99E-57 | -1.69E-46 |
| MS.gene050747 | MS.gene57942 | 0.822348 | 2.49E-53 | -1.69E-46 |
| MS.gene050767 | MS.gene57942 | 0.890797 | 7.12E-74 | -1.69E-46 |
| MS.gene050770 | MS.gene57942 | 0.893487 | 6.00E-75 | -1.69E-46 |
| MS.gene050772 | MS.gene57942 | 0.867936 | 9.47E-66 | -1.69E-46 |
| MS.gene05080 | MS.gene57942 | 0.812678 | 3.76E-51 | -1.69E-46 |
| MS.gene050950 | MS.gene57942 | 0.817886 | 2.61E-52 | -1.69E-46 |
| MS.gene050986 | MS.gene57942 | 0.804547 | 2.05E-49 | -1.69E-46 |
| MS.gene05100 | MS.gene57942 | 0.876381 | 1.46E-68 | -1.69E-46 |
| MS.gene05101 | MS.gene57942 | 0.804519 | 2.08E-49 | -1.69E-46 |
| MS.gene05105 | MS.gene57942 | 0.814343 | 1.62E-51 | -1.69E-46 |
| MS.gene051228 | MS.gene57942 | 0.873687 | 1.21E-67 | -1.69E-46 |
| MS.gene051434 | MS.gene57942 | 0.807041 | 6.14E-50 | -1.69E-46 |
| MS.gene051551 | MS.gene57942 | 0.805227 | 1.48E-49 | -1.69E-46 |
| MS.gene051666 | MS.gene57942 | 0.880591 | 4.84E-70 | -1.69E-46 |
| MS.gene051692 | MS.gene57942 | 0.803784 | 2.95E-49 | -1.69E-46 |
| MS.gene051694 | MS.gene57942 | 0.81799 | 2.48E-52 | -1.69E-46 |
| MS.gene051810 | MS.gene57942 | 0.857131 | 2.01E-62 | -1.69E-46 |
| MS.gene051858 | MS.gene57942 | 0.829244 | 5.74E-55 | -1.69E-46 |
| MS.gene051949 | MS.gene57942 | 0.84712 | 1.41E-59 | -1.69E-46 |
| MS.gene052078 | MS.gene57942 | 0.808527 | 2.97E-50 | -1.69E-46 |
| MS.gene052271 | MS.gene57942 | 0.864565 | 1.11E-64 | -1.69E-46 |
| MS.gene052290 | MS.gene57942 | 0.847296 | 1.27E-59 | -1.69E-46 |
| MS.gene052310 | MS.gene57942 | 0.814648 | 1.38E-51 | -1.69E-46 |
| MS.gene052379 | MS.gene57942 | 0.864581 | 1.10E-64 | -1.69E-46 |
| MS.gene052421 | MS.gene57942 | 0.811006 | 8.69E-51 | -1.69E-46 |
| MS.gene052484 | MS.gene57942 | 0.829217 | 5.83E-55 | -1.69E-46 |
| MS.gene052615 | MS.gene57942 | 0.819561 | 1.09E-52 | -1.69E-46 |
| MS.gene052872 | MS.gene57942 | 0.801207 | 1.00E-48 | -1.69E-46 |
| MS.gene052916 | MS.gene57942 | 0.864309 | 1.33E-64 | -1.69E-46 |
| MS.gene053009 | MS.gene57942 | 0.86807 | 8.58E-66 | -1.69E-46 |
| MS.gene053103 | MS.gene57942 | 0.851383 | 9.20E-61 | -1.69E-46 |
| MS.gene053104 | MS.gene57942 | 0.881806 | 1.77E-70 | -1.69E-46 |
| MS.gene053107 | MS.gene57942 | 0.811761 | 5.96E-51 | -1.69E-46 |
| MS.gene053207 | MS.gene57942 | 0.830771 | 2.43E-55 | -1.69E-46 |
| MS.gene053213 | MS.gene57942 | 0.871551 | 6.27E-67 | -1.69E-46 |
| MS.gene053286 | MS.gene57942 | 0.86167 | 8.71E-64 | -1.69E-46 |
| MS.gene053322 | MS.gene57942 | 0.907611 | 4.20E-81 | -1.69E-46 |
| MS.gene053574 | MS.gene57942 | 0.830777 | 2.43E-55 | -1.69E-46 |
| MS.gene053632 | MS.gene57942 | 0.861271 | 1.15E-63 | -1.69E-46 |
| MS.gene053916 | MS.gene57942 | 0.854291 | 1.36E-61 | -1.69E-46 |
| MS.gene054376 | MS.gene57942 | 0.879377 | 1.31E-69 | -1.69E-46 |
| MS.gene054600 | MS.gene57942 | 0.829738 | 4.35E-55 | -1.69E-46 |
| MS.gene054642 | MS.gene57942 | 0.901528 | 2.45E-78 | -1.69E-46 |
| MS.gene054802 | MS.gene57942 | 0.86241 | 5.17E-64 | -1.69E-46 |
| MS.gene054803 | MS.gene57942 | 0.862011 | 6.85E-64 | -1.69E-46 |
| MS.gene054804 | MS.gene57942 | 0.867859 | 1.00E-65 | -1.69E-46 |
| MS.gene054954 | MS.gene57942 | 0.822905 | 1.84E-53 | -1.69E-46 |
| MS.gene05505 | MS.gene57942 | 0.844428 | 7.61E-59 | -1.69E-46 |
| MS.gene055206 | MS.gene57942 | 0.836213 | 1.07E-56 | -1.69E-46 |
| MS.gene055212 | MS.gene57942 | 0.828418 | 9.09E-55 | -1.69E-46 |
| MS.gene055254 | MS.gene57942 | 0.843534 | 1.32E-58 | -1.69E-46 |
| MS.gene055289 | MS.gene57942 | 0.816411 | 5.61E-52 | -1.69E-46 |
| MS.gene055362 | MS.gene57942 | 0.849125 | 3.95E-60 | -1.69E-46 |
| MS.gene055397 | MS.gene57942 | 0.903174 | 4.56E-79 | -1.69E-46 |
| MS.gene055412 | MS.gene57942 | 0.801097 | 1.06E-48 | -1.69E-46 |
| MS.gene055499 | MS.gene57942 | 0.902663 | 7.70E-79 | -1.69E-46 |
| MS.gene055502 | MS.gene57942 | 0.849862 | 2.46E-60 | -1.69E-46 |
| MS.gene055577 | MS.gene57942 | 0.82553 | 4.46E-54 | -1.69E-46 |
| MS.gene055636 | MS.gene57942 | 0.82945 | 5.11E-55 | -1.69E-46 |
| MS.gene055638 | MS.gene57942 | 0.826174 | 3.13E-54 | -1.69E-46 |
| MS.gene055647 | MS.gene57942 | 0.852794 | 3.65E-61 | -1.69E-46 |
| MS.gene055722 | MS.gene57942 | 0.848894 | 4.58E-60 | -1.69E-46 |
| MS.gene055748 | MS.gene57942 | 0.800417 | 1.46E-48 | -1.69E-46 |
| MS.gene055896 | MS.gene57942 | 0.818935 | 1.51E-52 | -1.69E-46 |
| MS.gene05592 | MS.gene57942 | 0.888217 | 7.18E-73 | -1.69E-46 |
| MS.gene055941 | MS.gene57942 | 0.821973 | 3.04E-53 | -1.69E-46 |
| MS.gene055956 | MS.gene57942 | -0.844684 | 6.49E-59 | -1.69E-46 |
| MS.gene056083 | MS.gene57942 | 0.855891 | 4.65E-62 | -1.69E-46 |
| MS.gene056374 | MS.gene57942 | 0.856781 | 2.55E-62 | -1.69E-46 |
| MS.gene056487 | MS.gene57942 | 0.801058 | 1.08E-48 | -1.69E-46 |
| MS.gene056609 | MS.gene57942 | 0.835036 | 2.12E-56 | -1.69E-46 |
| MS.gene056657 | MS.gene57942 | 0.870213 | 1.73E-66 | -1.69E-46 |
| MS.gene056692 | MS.gene57942 | 0.825443 | 4.68E-54 | -1.69E-46 |
| MS.gene056897 | MS.gene57942 | 0.836214 | 1.07E-56 | -1.69E-46 |
| MS.gene057011 | MS.gene57942 | 0.8495 | 3.11E-60 | -1.69E-46 |
| MS.gene057123 | MS.gene57942 | 0.811621 | 6.39E-51 | -1.69E-46 |
| MS.gene057129 | MS.gene57942 | 0.920493 | 1.19E-87 | -1.69E-46 |
| MS.gene057146 | MS.gene57942 | 0.827895 | 1.21E-54 | -1.69E-46 |
| MS.gene057246 | MS.gene57942 | 0.869089 | 4.02E-66 | -1.69E-46 |
| MS.gene057295 | MS.gene57942 | 0.828348 | 9.45E-55 | -1.69E-46 |
| MS.gene057331 | MS.gene57942 | 0.842845 | 2.02E-58 | -1.69E-46 |
| MS.gene05735 | MS.gene57942 | 0.813866 | 2.06E-51 | -1.69E-46 |
| MS.gene057416 | MS.gene57942 | 0.888172 | 7.47E-73 | -1.69E-46 |
| MS.gene057658 | MS.gene57942 | 0.801827 | 7.49E-49 | -1.69E-46 |
| MS.gene057926 | MS.gene57942 | 0.823266 | 1.52E-53 | -1.69E-46 |
| MS.gene058019 | MS.gene57942 | 0.845905 | 3.03E-59 | -1.69E-46 |
| MS.gene058293 | MS.gene57942 | 0.839774 | 1.30E-57 | -1.69E-46 |
| MS.gene058323 | MS.gene57942 | 0.853083 | 3.02E-61 | -1.69E-46 |
| MS.gene058419 | MS.gene57942 | 0.878759 | 2.17E-69 | -1.69E-46 |
| MS.gene058544 | MS.gene57942 | 0.844934 | 5.56E-59 | -1.69E-46 |
| MS.gene058660 | MS.gene57942 | 0.827741 | 1.32E-54 | -1.69E-46 |
| MS.gene058723 | MS.gene57942 | 0.862091 | 6.48E-64 | -1.69E-46 |
| MS.gene058773 | MS.gene57942 | 0.839164 | 1.87E-57 | -1.69E-46 |
| MS.gene059022 | MS.gene57942 | 0.830795 | 2.40E-55 | -1.69E-46 |
| MS.gene059023 | MS.gene57942 | 0.80113 | 1.04E-48 | -1.69E-46 |
| MS.gene059029 | MS.gene57942 | 0.854028 | 1.62E-61 | -1.69E-46 |
| MS.gene05913 | MS.gene57942 | 0.816839 | 4.50E-52 | -1.69E-46 |
| MS.gene059326 | MS.gene57942 | 0.815084 | 1.11E-51 | -1.69E-46 |
| MS.gene05934 | MS.gene57942 | 0.848909 | 4.54E-60 | -1.69E-46 |
| MS.gene059536 | MS.gene57942 | 0.882851 | 7.36E-71 | -1.69E-46 |
| MS.gene059677 | MS.gene57942 | 0.866264 | 3.24E-65 | -1.69E-46 |
| MS.gene059688 | MS.gene57942 | 0.804408 | 2.19E-49 | -1.69E-46 |
| MS.gene059692 | MS.gene57942 | 0.80648 | 8.06E-50 | -1.69E-46 |
| MS.gene059695 | MS.gene57942 | 0.811953 | 5.41E-51 | -1.69E-46 |
| MS.gene059718 | MS.gene57942 | 0.850934 | 1.23E-60 | -1.69E-46 |
| MS.gene059902 | MS.gene57942 | 0.834013 | 3.83E-56 | -1.69E-46 |
| MS.gene059960 | MS.gene57942 | 0.905647 | 3.44E-80 | -1.69E-46 |
| MS.gene060193 | MS.gene57942 | 0.826815 | 2.21E-54 | -1.69E-46 |
| MS.gene060762 | MS.gene57942 | 0.825635 | 4.21E-54 | -1.69E-46 |
| MS.gene060804 | MS.gene57942 | 0.868815 | 4.93E-66 | -1.69E-46 |
| MS.gene060818 | MS.gene57942 | 0.852473 | 4.51E-61 | -1.69E-46 |
| MS.gene060835 | MS.gene57942 | 0.800519 | 1.39E-48 | -1.69E-46 |
| MS.gene06092 | MS.gene57942 | 0.847136 | 1.40E-59 | -1.69E-46 |
| MS.gene061041 | MS.gene57942 | 0.86045 | 2.05E-63 | -1.69E-46 |
| MS.gene061134 | MS.gene57942 | 0.805749 | 1.15E-49 | -1.69E-46 |
| MS.gene061150 | MS.gene57942 | 0.873529 | 1.37E-67 | -1.69E-46 |
| MS.gene061171 | MS.gene57942 | 0.800803 | 1.21E-48 | -1.69E-46 |
| MS.gene061200 | MS.gene57942 | 0.89864 | 4.35E-77 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57942.t1 | MTR_4g129320 | 95.804 | 143 | 5 | 1 | 3 | 145 | 2 | 143 | 7.01e-99 | 280 |
| MS.gene57942.t1 | MTR_4g129300 | 61.905 | 126 | 23 | 4 | 1 | 125 | 1 | 102 | 1.10e-41 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57942.t1 | AT4G28025 | 55.147 | 136 | 55 | 3 | 13 | 143 | 19 | 153 | 1.29e-42 | 139 |
| MS.gene57942.t1 | AT4G28025 | 54.815 | 135 | 48 | 2 | 13 | 143 | 19 | 144 | 3.42e-42 | 137 |
Find 37 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCATTAATTGCCTCAATT+TGG | 0.217949 | 8.4:-5339130 | None:intergenic |
| TGCTTGACTCTGGGTTCTAT+TGG | 0.273238 | 8.4:-5338252 | None:intergenic |
| CGCCAAATTGAGGCAATTAA+TGG | 0.290415 | 8.4:+5339128 | MS.gene57942:CDS |
| GGAAGGGAATTGAGCGTTGT+TGG | 0.358874 | 8.4:-5337260 | None:intergenic |
| AATTGAGCGTTGTTGGATAG+AGG | 0.398480 | 8.4:-5337253 | None:intergenic |
| CTAGTTATTGAAGGTCAAAC+TGG | 0.408273 | 8.4:+5339182 | MS.gene57942:CDS |
| TTTAATTATCTCCATTTGTT+CGG | 0.418482 | 8.4:-5338989 | None:intergenic |
| AATGGAGCTTGGGCAATGAT+TGG | 0.426888 | 8.4:+5339146 | MS.gene57942:CDS |
| GCGATTGGCTGCCGAACAAA+TGG | 0.433796 | 8.4:+5338978 | MS.gene57942:CDS |
| TCTCAGCTGCAAGACTACTT+TGG | 0.437019 | 8.4:+5339608 | MS.gene57942:intron |
| TTGAGGCAATTAATGGAGCT+TGG | 0.452490 | 8.4:+5339135 | MS.gene57942:CDS |
| TGAGGCAATTAATGGAGCTT+GGG | 0.452983 | 8.4:+5339136 | MS.gene57942:CDS |
| ATAATTATACAGGTATCTTC+AGG | 0.464483 | 8.4:+5338904 | MS.gene57942:intron |
| GGACTCGAAATGCTTGACTC+TGG | 0.489914 | 8.4:-5338262 | None:intergenic |
| GCCAATCGCTTGGCTTCCAC+AGG | 0.490320 | 8.4:-5338964 | None:intergenic |
| TGGTGGGTGTGATGAAAGGA+AGG | 0.494555 | 8.4:-5337277 | None:intergenic |
| TGCATACATTGGGATTAGCT+AGG | 0.502437 | 8.4:-5338283 | None:intergenic |
| TGAAATTACTTGGCGGTGGT+CGG | 0.516726 | 8.4:-5337307 | None:intergenic |
| TTGTTCGGCAGCCAATCGCT+TGG | 0.519239 | 8.4:-5338974 | None:intergenic |
| GACTCGAAATGCTTGACTCT+GGG | 0.527834 | 8.4:-5338261 | None:intergenic |
| ACAGCGGGTCTAGTTATTGA+AGG | 0.529878 | 8.4:+5339173 | MS.gene57942:CDS |
| GTTGTTGGATAGAGGAAGAG+TGG | 0.561270 | 8.4:-5337245 | None:intergenic |
| CAGGTATCTTCAGGAAAGGA+TGG | 0.562970 | 8.4:+5338913 | MS.gene57942:intron |
| TGGAGAAGAGAGCAATATGC+TGG | 0.566450 | 8.4:+5338221 | MS.gene57942:CDS |
| CGGTGGTCGGAAAAGAGTGG+TGG | 0.568189 | 8.4:-5337294 | None:intergenic |
| GGCAATGATTGGTCTAACAG+CGG | 0.572593 | 8.4:+5339157 | MS.gene57942:CDS |
| AAGAGAGCAATATGCTGGCA+TGG | 0.578828 | 8.4:+5338226 | MS.gene57942:CDS |
| GTAGAAAAGACGCCAAATTG+AGG | 0.581143 | 8.4:+5339118 | MS.gene57942:intron |
| AGAGTGGTGGGTGTGATGAA+AGG | 0.588914 | 8.4:-5337281 | None:intergenic |
| GCAATGATTGGTCTAACAGC+GGG | 0.589959 | 8.4:+5339158 | MS.gene57942:CDS |
| TCCTGTGGAAGCCAAGCGAT+TGG | 0.590043 | 8.4:+5338963 | MS.gene57942:CDS |
| GGTGGTCGGAAAAGAGTGGT+GGG | 0.609303 | 8.4:-5337293 | None:intergenic |
| TATACAGGTATCTTCAGGAA+AGG | 0.610775 | 8.4:+5338909 | MS.gene57942:intron |
| AGAGTGAAATTACTTGGCGG+TGG | 0.619832 | 8.4:-5337311 | None:intergenic |
| TGTAATCATGGTTGATCCTG+TGG | 0.620604 | 8.4:+5338948 | MS.gene57942:CDS |
| TGGCGGTGGTCGGAAAAGAG+TGG | 0.650155 | 8.4:-5337297 | None:intergenic |
| GGTGGGTGTGATGAAAGGAA+GGG | 0.678716 | 8.4:-5337276 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAACATTAAAGTAATAAA+TGG | + | chr8.4:5338013-5338032 | MS.gene57942:intron | 10.0% |
| !! | AAATTAGAAAAAATACAGAT+TGG | - | chr8.4:5339346-5339365 | None:intergenic | 15.0% |
| !! | ATAAAATAACCATCAATAAT+AGG | - | chr8.4:5337463-5337482 | None:intergenic | 15.0% |
| !! | ATATAAATAATAAACCACAA+TGG | + | chr8.4:5338051-5338070 | MS.gene57942:intron | 15.0% |
| !!! | ATTTTATTAAAGTAAACCAA+AGG | + | chr8.4:5339368-5339387 | MS.gene57942:intron | 15.0% |
| !! | AGATCTACATATAATTATAC+AGG | + | chr8.4:5338894-5338913 | MS.gene57942:intron | 20.0% |
| !! | TAATTAGCAATAACAAAACA+AGG | - | chr8.4:5338170-5338189 | None:intergenic | 20.0% |
| !! | TAATTTGAGAATAGAAGATT+CGG | + | chr8.4:5337417-5337436 | MS.gene57942:intron | 20.0% |
| !! | TATAAATTTGTATTCCATTG+TGG | - | chr8.4:5338068-5338087 | None:intergenic | 20.0% |
| !! | TTTAATTATCTCCATTTGTT+CGG | - | chr8.4:5338992-5339011 | None:intergenic | 20.0% |
| !!! | CTTTAAAAAATAGATAGACA+AGG | - | chr8.4:5337502-5337521 | None:intergenic | 20.0% |
| !!! | GAATTTATTTTGTCATAGAA+AGG | - | chr8.4:5338826-5338845 | None:intergenic | 20.0% |
| !!! | TGATGGTTATTTTATAAAGT+AGG | + | chr8.4:5337468-5337487 | MS.gene57942:intron | 20.0% |
| !!! | TTTTATGTTGAAAACTATCT+AGG | + | chr8.4:5338393-5338412 | MS.gene57942:intron | 20.0% |
| ! | AATTTGAGAATAGAAGATTC+GGG | + | chr8.4:5337418-5337437 | MS.gene57942:intron | 25.0% |
| ! | AGATTATATTATCCTAACCA+AGG | - | chr8.4:5337569-5337588 | None:intergenic | 25.0% |
| ! | ATAATTATACAGGTATCTTC+AGG | + | chr8.4:5338904-5338923 | MS.gene57942:intron | 25.0% |
| ! | CTCAGAAAACTAAATTCTAA+AGG | - | chr8.4:5337781-5337800 | None:intergenic | 25.0% |
| ! | GAAATCTAACAGATAATTGT+TGG | + | chr8.4:5338096-5338115 | MS.gene57942:intron | 25.0% |
| ! | GTTCAATTTATGCATACATT+GGG | - | chr8.4:5338296-5338315 | None:intergenic | 25.0% |
| ! | TAAAGCAAAAGAAAAACTCA+AGG | + | chr8.4:5339008-5339027 | MS.gene57942:CDS | 25.0% |
| ! | TCAAAATTTAAGAGGATAAC+AGG | + | chr8.4:5338561-5338580 | MS.gene57942:intron | 25.0% |
| ! | TGTTCAATTTATGCATACAT+TGG | - | chr8.4:5338297-5338316 | None:intergenic | 25.0% |
| ! | TTCAAAAAAGGATGTAATCA+TGG | + | chr8.4:5338936-5338955 | MS.gene57942:CDS | 25.0% |
| !! | AAATATGTTGACTATAGCAT+AGG | - | chr8.4:5338499-5338518 | None:intergenic | 25.0% |
| !! | ACTGATCTTTTATATGAGAT+TGG | + | chr8.4:5338348-5338367 | MS.gene57942:intron | 25.0% |
| !! | AGTGTTATTCCTATTATTGA+TGG | + | chr8.4:5337451-5337470 | MS.gene57942:intron | 25.0% |
| !! | TCATAAAGTTTGCAAGTTTT+AGG | + | chr8.4:5337533-5337552 | MS.gene57942:intron | 25.0% |
| !!! | AGGATGCGTATTTTTTTTAA+TGG | - | chr8.4:5337761-5337780 | None:intergenic | 25.0% |
| !!! | CTTTAGAATTTAGTTTTCTG+AGG | + | chr8.4:5337779-5337798 | MS.gene57942:intron | 25.0% |
| !!! | TCTCAAATTCATGTTTTTTG+AGG | + | chr8.4:5337352-5337371 | MS.gene57942:intron | 25.0% |
| AAAAGCTTCATGAATTCTCT+AGG | + | chr8.4:5337960-5337979 | MS.gene57942:intron | 30.0% | |
| AAATAGATAGACAAGGACAA+TGG | - | chr8.4:5337495-5337514 | None:intergenic | 30.0% | |
| AATGAAAAGAAAACCGCAAA+AGG | - | chr8.4:5338863-5338882 | None:intergenic | 30.0% | |
| ACTGTGTATTTGTGTATTGT+TGG | + | chr8.4:5338316-5338335 | MS.gene57942:intron | 30.0% | |
| AGTGGGAATTATAGACTTAT+AGG | + | chr8.4:5338639-5338658 | MS.gene57942:intron | 30.0% | |
| ATCGAAAAAATGACAGACAT+CGG | - | chr8.4:5337990-5338009 | None:intergenic | 30.0% | |
| ATGAAAAGAAAACCGCAAAA+GGG | - | chr8.4:5338862-5338881 | None:intergenic | 30.0% | |
| ATTTGAGAATAGAAGATTCG+GGG | + | chr8.4:5337419-5337438 | MS.gene57942:intron | 30.0% | |
| CTACAATCACAACATAAAGT+TGG | - | chr8.4:5339102-5339121 | None:intergenic | 30.0% | |
| CTTTCATTGCTTCCATTATT+TGG | + | chr8.4:5339536-5339555 | MS.gene57942:intron | 30.0% | |
| GCACAAAAATACAAATGTAC+AGG | + | chr8.4:5338523-5338542 | MS.gene57942:intron | 30.0% | |
| GCTATAGTCAACATATTTAC+TGG | + | chr8.4:5338501-5338520 | MS.gene57942:intron | 30.0% | |
| GGAATTGTTCAACCAAATAA+TGG | - | chr8.4:5339551-5339570 | None:intergenic | 30.0% | |
| GGTAAGTTTATAGTAAACTG+AGG | - | chr8.4:5339081-5339100 | None:intergenic | 30.0% | |
| TAAACTCATACAGACATATG+TGG | + | chr8.4:5339285-5339304 | MS.gene57942:intron | 30.0% | |
| TATCTAGGTATGATCTCAAA+TGG | + | chr8.4:5338408-5338427 | MS.gene57942:intron | 30.0% | |
| TGCACATCAAAACATTATAG+AGG | - | chr8.4:5339572-5339591 | None:intergenic | 30.0% | |
| TGGAAAAAATATCATTACCC+AGG | + | chr8.4:5339202-5339221 | MS.gene57942:CDS | 30.0% | |
| TGGTAGGTTCAAAATTTAAG+AGG | + | chr8.4:5338553-5338572 | MS.gene57942:intron | 30.0% | |
| TTGAGAAGAAAGAAGTGAAA+GGG | - | chr8.4:5337338-5337357 | None:intergenic | 30.0% | |
| TTTAAGAGGATAACAGGATA+TGG | + | chr8.4:5338567-5338586 | MS.gene57942:intron | 30.0% | |
| TTTGAGAAGAAAGAAGTGAA+AGG | - | chr8.4:5337339-5337358 | None:intergenic | 30.0% | |
| ! | TCACACAATCTTTTAGCAAT+TGG | - | chr8.4:5339416-5339435 | None:intergenic | 30.0% |
| ! | TTTTGTCATAGAAAGGTAGA+AGG | - | chr8.4:5338819-5338838 | None:intergenic | 30.0% |
| !! | ATATGAGATTGGTTGTTTCT+CGG | + | chr8.4:5338359-5338378 | MS.gene57942:intron | 30.0% |
| !! | GATATTAACCTCGTTGTTTT+AGG | + | chr8.4:5338192-5338211 | MS.gene57942:intron | 30.0% |
| !!! | TTTTAGGATTTACACAACCT+TGG | + | chr8.4:5337549-5337568 | MS.gene57942:intron | 30.0% |
| AACAAAAGACCTATATGCTC+CGG | - | chr8.4:5337833-5337852 | None:intergenic | 35.0% | |
| AAGGGAAGAGTGAAATTACT+TGG | - | chr8.4:5337320-5337339 | None:intergenic | 35.0% | |
| AGGAAAGGATGGTTCAAAAA+AGG | + | chr8.4:5338924-5338943 | MS.gene57942:CDS | 35.0% | |
| AGGACCATACATTACATGAA+CGG | + | chr8.4:5339259-5339278 | MS.gene57942:intron | 35.0% | |
| AGGATAACAGGATATGGAAA+AGG | + | chr8.4:5338573-5338592 | MS.gene57942:intron | 35.0% | |
| ATCTCCGTTCATGTAATGTA+TGG | - | chr8.4:5339266-5339285 | None:intergenic | 35.0% | |
| ATGCAATAATGCCAACATGT+CGG | - | chr8.4:5339456-5339475 | None:intergenic | 35.0% | |
| CTAGTTATTGAAGGTCAAAC+TGG | + | chr8.4:5339182-5339201 | MS.gene57942:CDS | 35.0% | |
| CTCCATTAATTGCCTCAATT+TGG | - | chr8.4:5339133-5339152 | None:intergenic | 35.0% | |
| GACAAAGTTGGAAAATCAGT+GGG | + | chr8.4:5338622-5338641 | MS.gene57942:intron | 35.0% | |
| GGATAACAGGATATGGAAAA+GGG | + | chr8.4:5338574-5338593 | MS.gene57942:intron | 35.0% | |
| TATACAGGTATCTTCAGGAA+AGG | + | chr8.4:5338909-5338928 | MS.gene57942:intron | 35.0% | |
| TCATGTAATGTATGGTCCTA+TGG | - | chr8.4:5339258-5339277 | None:intergenic | 35.0% | |
| TGACAAAGTTGGAAAATCAG+TGG | + | chr8.4:5338621-5338640 | MS.gene57942:intron | 35.0% | |
| TTATAGTAAACTGAGGAGCA+TGG | - | chr8.4:5339074-5339093 | None:intergenic | 35.0% | |
| !! | ATAGTAAGCACTGACAAAGT+TGG | + | chr8.4:5338610-5338629 | MS.gene57942:intron | 35.0% |
| !!! | ATTAACCTCGTTGTTTTAGG+TGG | + | chr8.4:5338195-5338214 | MS.gene57942:intron | 35.0% |
| !!! | TTAACCTCGTTGTTTTAGGT+GGG | + | chr8.4:5338196-5338215 | MS.gene57942:intron | 35.0% |
| AACAGTAGTAGATAGTACGC+AGG | + | chr8.4:5337605-5337624 | MS.gene57942:intron | 40.0% | |
| AAGCATTTCCAATGTTCACC+TGG | - | chr8.4:5339223-5339242 | None:intergenic | 40.0% | |
| ACAAATGTACAGGAGAGAAG+TGG | + | chr8.4:5338533-5338552 | MS.gene57942:intron | 40.0% | |
| AGCATTTCCAATGTTCACCT+GGG | - | chr8.4:5339222-5339241 | None:intergenic | 40.0% | |
| ATAACTTAGCCGGAGCATAT+AGG | + | chr8.4:5337821-5337840 | MS.gene57942:intron | 40.0% | |
| ATCATTACCCAGGTGAACAT+TGG | + | chr8.4:5339212-5339231 | MS.gene57942:intron | 40.0% | |
| ATGTGTCTGCATTGGGAATT+TGG | - | chr8.4:5337671-5337690 | None:intergenic | 40.0% | |
| ATTCCTTGCGATTATCCCTT+GGG | - | chr8.4:5337694-5337713 | None:intergenic | 40.0% | |
| CGCCAAATTGAGGCAATTAA+TGG | + | chr8.4:5339128-5339147 | MS.gene57942:CDS | 40.0% | |
| GGAAGAGTGAAATTACTTGG+CGG | - | chr8.4:5337317-5337336 | None:intergenic | 40.0% | |
| GGATTTACACAACCTTGGTT+AGG | + | chr8.4:5337554-5337573 | MS.gene57942:intron | 40.0% | |
| GGGATAATCGCAAGGAATAA+TGG | + | chr8.4:5337696-5337715 | MS.gene57942:intron | 40.0% | |
| GTAGAAAAGACGCCAAATTG+AGG | + | chr8.4:5339118-5339137 | MS.gene57942:intron | 40.0% | |
| TAGAAGGAAGCAACAAAGCT+GGG | - | chr8.4:5338803-5338822 | None:intergenic | 40.0% | |
| TATTCCTTGCGATTATCCCT+TGG | - | chr8.4:5337695-5337714 | None:intergenic | 40.0% | |
| TGACTATAGCATAGGATCAC+AGG | - | chr8.4:5338491-5338510 | None:intergenic | 40.0% | |
| TGAGGCAATTAATGGAGCTT+GGG | + | chr8.4:5339136-5339155 | MS.gene57942:CDS | 40.0% | |
| TGTAATCATGGTTGATCCTG+TGG | + | chr8.4:5338948-5338967 | MS.gene57942:CDS | 40.0% | |
| TGTGTCTGCATTGGGAATTT+GGG | - | chr8.4:5337670-5337689 | None:intergenic | 40.0% | |
| TTGAGGCAATTAATGGAGCT+TGG | + | chr8.4:5339135-5339154 | MS.gene57942:CDS | 40.0% | |
| ! | AATTGAGCGTTGTTGGATAG+AGG | - | chr8.4:5337256-5337275 | None:intergenic | 40.0% |
| ! | GCTTTTGTTCACATGTCCAT+AGG | + | chr8.4:5339239-5339258 | MS.gene57942:intron | 40.0% |
| ! | GTTGGATTTTCTCTGCTTGA+AGG | + | chr8.4:5338114-5338133 | MS.gene57942:intron | 40.0% |
| ! | TTCATTCCTCTTCCCTTTTG+CGG | + | chr8.4:5338847-5338866 | MS.gene57942:intron | 40.0% |
| !! | TGCATACATTGGGATTAGCT+AGG | - | chr8.4:5338286-5338305 | None:intergenic | 40.0% |
| !!! | TAACCTCGTTGTTTTAGGTG+GGG | + | chr8.4:5338197-5338216 | MS.gene57942:intron | 40.0% |
| AAGAGAGCAATATGCTGGCA+TGG | + | chr8.4:5338226-5338245 | MS.gene57942:CDS | 45.0% | |
| AATGGAGCTTGGGCAATGAT+TGG | + | chr8.4:5339146-5339165 | MS.gene57942:CDS | 45.0% | |
| ACAGCGGGTCTAGTTATTGA+AGG | + | chr8.4:5339173-5339192 | MS.gene57942:CDS | 45.0% | |
| AGAAAACCGCAAAAGGGAAG+AGG | - | chr8.4:5338856-5338875 | None:intergenic | 45.0% | |
| AGAGTGAAATTACTTGGCGG+TGG | - | chr8.4:5337314-5337333 | None:intergenic | 45.0% | |
| ATGTACAGGAGAGAAGTGGT+AGG | + | chr8.4:5338537-5338556 | MS.gene57942:intron | 45.0% | |
| CAGATTGGAGAGATAGAGAG+AGG | - | chr8.4:5339331-5339350 | None:intergenic | 45.0% | |
| CAGGTATCTTCAGGAAAGGA+TGG | + | chr8.4:5338913-5338932 | MS.gene57942:intron | 45.0% | |
| GACTCGAAATGCTTGACTCT+GGG | - | chr8.4:5338264-5338283 | None:intergenic | 45.0% | |
| GATGTGCTCGCTTTACTTCA+TGG | - | chr8.4:5339394-5339413 | None:intergenic | 45.0% | |
| GTAGAAGGAAGCAACAAAGC+TGG | - | chr8.4:5338804-5338823 | None:intergenic | 45.0% | |
| GTAGTCGCTCATAACTTAGC+CGG | + | chr8.4:5337811-5337830 | MS.gene57942:intron | 45.0% | |
| GTTGTTGGATAGAGGAAGAG+TGG | - | chr8.4:5337248-5337267 | None:intergenic | 45.0% | |
| TCGCTTTACTTCATGGCCTT+TGG | - | chr8.4:5339387-5339406 | None:intergenic | 45.0% | |
| TCTCAGCTGCAAGACTACTT+TGG | + | chr8.4:5339608-5339627 | MS.gene57942:intron | 45.0% | |
| TCTGCTTGAAGGAATCAGCA+TGG | + | chr8.4:5338125-5338144 | MS.gene57942:intron | 45.0% | |
| TGAAATTACTTGGCGGTGGT+CGG | - | chr8.4:5337310-5337329 | None:intergenic | 45.0% | |
| TGCTTGACTCTGGGTTCTAT+TGG | - | chr8.4:5338255-5338274 | None:intergenic | 45.0% | |
| TGGAGAAGAGAGCAATATGC+TGG | + | chr8.4:5338221-5338240 | MS.gene57942:CDS | 45.0% | |
| !! | GCAATGATTGGTCTAACAGC+GGG | + | chr8.4:5339158-5339177 | MS.gene57942:CDS | 45.0% |
| !! | GGCAATGATTGGTCTAACAG+CGG | + | chr8.4:5339157-5339176 | MS.gene57942:CDS | 45.0% |
| AATCAGCATGGCAACCTTGC+AGG | + | chr8.4:5338137-5338156 | MS.gene57942:intron | 50.0% | |
| ACTCGTGTATATCCCCGTCT+CGG | - | chr8.4:5337632-5337651 | None:intergenic | 50.0% | |
| AGATAGAGAGAGGTGACTGC+AGG | - | chr8.4:5339321-5339340 | None:intergenic | 50.0% | |
| ATCAGCATGGCAACCTTGCA+GGG | + | chr8.4:5338138-5338157 | MS.gene57942:intron | 50.0% | |
| CATCCCAAGGGATAATCGCA+AGG | + | chr8.4:5337688-5337707 | MS.gene57942:intron | 50.0% | |
| CATCCCCACCTAAAACAACG+AGG | - | chr8.4:5338203-5338222 | None:intergenic | 50.0% | |
| CCAATGCAGACACATCCCAA+GGG | + | chr8.4:5337676-5337695 | MS.gene57942:intron | 50.0% | |
| CCTTGGGATGTGTCTGCATT+GGG | - | chr8.4:5337678-5337697 | None:intergenic | 50.0% | |
| GATAGAGAGAGGTGACTGCA+GGG | - | chr8.4:5339320-5339339 | None:intergenic | 50.0% | |
| GGACTCGAAATGCTTGACTC+TGG | - | chr8.4:5338265-5338284 | None:intergenic | 50.0% | |
| GGTGGGTGTGATGAAAGGAA+GGG | - | chr8.4:5337279-5337298 | None:intergenic | 50.0% | |
| TAATGCCAACATGTCGGACC+AGG | - | chr8.4:5339450-5339469 | None:intergenic | 50.0% | |
| TCAATCCTGGTCCGACATGT+TGG | + | chr8.4:5339442-5339461 | MS.gene57942:intron | 50.0% | |
| TGTGTGACTGCAGTCAATCC+TGG | + | chr8.4:5339429-5339448 | MS.gene57942:intron | 50.0% | |
| ! | GGAAGGGAATTGAGCGTTGT+TGG | - | chr8.4:5337263-5337282 | None:intergenic | 50.0% |
| ! | TGGTGGGTGTGATGAAAGGA+AGG | - | chr8.4:5337280-5337299 | None:intergenic | 50.0% |
| !! | AGAGTGGTGGGTGTGATGAA+AGG | - | chr8.4:5337284-5337303 | None:intergenic | 50.0% |
| !!! | CTCGTTGTTTTAGGTGGGGA+TGG | + | chr8.4:5338201-5338220 | MS.gene57942:intron | 50.0% |
| AACAAGGTCCTTGCCCTGCA+AGG | - | chr8.4:5338154-5338173 | None:intergenic | 55.0% | |
| ATAGTACGCAGGACCGAGAC+GGG | + | chr8.4:5337616-5337635 | MS.gene57942:intron | 55.0% | |
| CCCAATGCAGACACATCCCA+AGG | + | chr8.4:5337675-5337694 | MS.gene57942:intron | 55.0% | |
| CCCTTGGGATGTGTCTGCAT+TGG | - | chr8.4:5337679-5337698 | None:intergenic | 55.0% | |
| GATAGTACGCAGGACCGAGA+CGG | + | chr8.4:5337615-5337634 | MS.gene57942:intron | 55.0% | |
| GGTGGTCGGAAAAGAGTGGT+GGG | - | chr8.4:5337296-5337315 | None:intergenic | 55.0% | |
| TCCTGTGGAAGCCAAGCGAT+TGG | + | chr8.4:5338963-5338982 | MS.gene57942:CDS | 55.0% | |
| TTGTTCGGCAGCCAATCGCT+TGG | - | chr8.4:5338977-5338996 | None:intergenic | 55.0% | |
| ! | GCGATTGGCTGCCGAACAAA+TGG | + | chr8.4:5338978-5338997 | MS.gene57942:CDS | 55.0% |
| CATGGCAACCTTGCAGGGCA+AGG | + | chr8.4:5338143-5338162 | MS.gene57942:intron | 60.0% | |
| CGGTGGTCGGAAAAGAGTGG+TGG | - | chr8.4:5337297-5337316 | None:intergenic | 60.0% | |
| GCCAATCGCTTGGCTTCCAC+AGG | - | chr8.4:5338967-5338986 | None:intergenic | 60.0% | |
| TAGTACGCAGGACCGAGACG+GGG | + | chr8.4:5337617-5337636 | MS.gene57942:intron | 60.0% | |
| TGGCGGTGGTCGGAAAAGAG+TGG | - | chr8.4:5337300-5337319 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 5337229 | 5339658 | 5337229 | ID=MS.gene57942 |
| chr8.4 | mRNA | 5337229 | 5339658 | 5337229 | ID=MS.gene57942.t1;Parent=MS.gene57942 |
| chr8.4 | exon | 5337229 | 5337320 | 5337229 | ID=MS.gene57942.t1.exon1;Parent=MS.gene57942.t1 |
| chr8.4 | CDS | 5337229 | 5337320 | 5337229 | ID=cds.MS.gene57942.t1;Parent=MS.gene57942.t1 |
| chr8.4 | exon | 5338214 | 5338298 | 5338214 | ID=MS.gene57942.t1.exon2;Parent=MS.gene57942.t1 |
| chr8.4 | CDS | 5338214 | 5338298 | 5338214 | ID=cds.MS.gene57942.t1;Parent=MS.gene57942.t1 |
| chr8.4 | exon | 5338916 | 5339029 | 5338916 | ID=MS.gene57942.t1.exon3;Parent=MS.gene57942.t1 |
| chr8.4 | CDS | 5338916 | 5339029 | 5338916 | ID=cds.MS.gene57942.t1;Parent=MS.gene57942.t1 |
| chr8.4 | exon | 5339122 | 5339223 | 5339122 | ID=MS.gene57942.t1.exon4;Parent=MS.gene57942.t1 |
| chr8.4 | CDS | 5339122 | 5339223 | 5339122 | ID=cds.MS.gene57942.t1;Parent=MS.gene57942.t1 |
| chr8.4 | exon | 5339614 | 5339658 | 5339614 | ID=MS.gene57942.t1.exon5;Parent=MS.gene57942.t1 |
| chr8.4 | CDS | 5339614 | 5339658 | 5339614 | ID=cds.MS.gene57942.t1;Parent=MS.gene57942.t1 |
| Gene Sequence |
| Protein sequence |
