AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene70482


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70482.t1 MTR_3g082200 83.158 190 29 1 5 191 267 456 2.37e-108 324
MS.gene70482.t1 MTR_3g082200 83.158 190 29 1 5 191 282 471 2.47e-108 324
MS.gene70482.t1 MTR_3g082200 83.158 190 29 1 5 191 405 594 6.54e-107 324
MS.gene70482.t1 MTR_4g103495 58.763 194 77 1 5 195 256 449 6.35e-75 237
MS.gene70482.t1 MTR_4g103495 58.763 194 77 1 5 195 405 598 4.66e-74 238
MS.gene70482.t1 MTR_4g134320 57.216 194 80 1 5 195 404 597 6.11e-74 238
MS.gene70482.t1 MTR_7g098070 57.732 194 79 1 5 195 400 593 3.02e-73 236
MS.gene70482.t1 MTR_4g103400 55.897 195 77 2 6 191 403 597 9.50e-69 224
MS.gene70482.t1 MTR_4g103490 55.670 194 83 1 5 195 416 609 1.05e-68 224
MS.gene70482.t1 MTR_4g103450 56.186 194 82 1 5 195 376 569 4.25e-68 221
MS.gene70482.t1 MTR_4g103480 56.186 194 82 1 5 195 419 612 7.88e-68 221
MS.gene70482.t1 MTR_5g055920 54.639 194 85 1 5 195 299 492 1.22e-65 214
MS.gene70482.t1 MTR_5g096750 55.385 195 75 2 3 194 404 589 7.08e-64 211
MS.gene70482.t1 MTR_4g103430 53.093 194 88 1 5 195 401 594 1.37e-63 210
MS.gene70482.t1 MTR_3g061110 51.295 193 90 1 3 191 384 576 4.99e-59 197
MS.gene70482.t1 MTR_0047s0120 47.594 187 95 1 6 189 386 572 2.96e-55 187
MS.gene70482.t1 MTR_2g018135 46.154 195 101 2 3 193 413 607 2.14e-54 185
MS.gene70482.t1 MTR_5g016120 47.619 189 96 1 6 191 390 578 1.15e-53 183
MS.gene70482.t1 MTR_2g018125 45.128 195 103 2 3 193 414 608 6.13e-53 181
MS.gene70482.t1 MTR_5g085690 50.990 202 86 4 3 191 411 612 1.06e-52 180
MS.gene70482.t1 MTR_4g095360 44.211 190 103 1 5 191 383 572 1.36e-51 177
MS.gene70482.t1 MTR_1g102350 46.316 190 99 1 5 191 406 595 1.73e-51 177
MS.gene70482.t1 MTR_4g073540 43.814 194 106 1 1 191 387 580 1.97e-51 177
MS.gene70482.t1 MTR_4g125180 44.792 192 102 2 3 191 378 568 1.22e-50 174
MS.gene70482.t1 MTR_8g021130 47.179 195 97 2 3 191 396 590 2.07e-50 174
MS.gene70482.t1 MTR_8g022870 47.938 194 94 3 5 191 394 587 6.44e-50 172
MS.gene70482.t1 MTR_2g042130 43.229 192 106 1 3 191 399 590 3.19e-49 171
MS.gene70482.t1 MTR_3g102810 42.632 190 106 1 5 191 377 566 5.20e-49 170
MS.gene70482.t1 MTR_7g075900 43.684 190 103 2 5 191 399 587 5.32e-49 170
MS.gene70482.t1 MTR_1g018510 43.158 190 105 1 5 191 344 533 7.62e-49 169
MS.gene70482.t1 MTR_7g081750 44.843 223 81 5 3 191 406 620 5.39e-47 164
MS.gene70482.t1 MTR_7g081580 45.192 208 99 5 1 195 405 610 5.57e-47 164
MS.gene70482.t1 MTR_7g481600 45.192 208 99 5 1 195 405 610 5.75e-47 164
MS.gene70482.t1 MTR_7g098630 44.041 193 105 1 2 191 381 573 7.35e-46 162
MS.gene70482.t1 MTR_7g081420 44.601 213 90 5 3 195 407 611 1.43e-45 160
MS.gene70482.t1 MTR_4g102400 43.590 195 101 4 1 191 385 574 2.72e-44 157
MS.gene70482.t1 MTR_7g081380 42.727 220 93 6 3 191 411 628 1.11e-42 152
MS.gene70482.t1 MTR_7g081500 44.608 204 102 5 3 195 406 609 1.27e-42 152
MS.gene70482.t1 MTR_5g025010 40.816 196 99 3 2 191 389 573 5.94e-42 150
MS.gene70482.t1 MTR_5g025010 40.816 196 99 3 2 191 357 541 6.40e-42 150
MS.gene70482.t1 MTR_5g011340 42.408 191 99 2 5 191 387 570 4.71e-40 145
MS.gene70482.t1 MTR_5g011310 41.885 191 100 2 5 191 390 573 9.08e-40 144
MS.gene70482.t1 MTR_8g033150 42.487 193 102 6 3 193 394 579 2.68e-39 143
MS.gene70482.t1 MTR_8g033150 42.487 193 102 6 3 193 367 552 2.82e-39 142
MS.gene70482.t1 MTR_5g011270 41.919 198 104 2 5 198 388 578 3.03e-39 142
MS.gene70482.t1 MTR_5g011370 42.708 192 97 3 5 191 410 593 3.27e-39 142
MS.gene70482.t1 MTR_5g011190 42.708 192 97 3 5 191 390 573 3.51e-39 142
MS.gene70482.t1 MTR_8g079900 41.361 191 107 3 3 193 286 471 3.82e-39 142
MS.gene70482.t1 MTR_5g011320 41.579 190 101 2 5 191 383 565 4.10e-39 142
MS.gene70482.t1 MTR_8g079900 40.933 193 105 4 3 193 384 569 4.61e-39 142
MS.gene70482.t1 MTR_8g042710 37.313 201 116 6 6 199 395 592 1.14e-38 140
MS.gene70482.t1 MTR_5g011260 41.361 191 101 2 5 191 388 571 1.36e-38 141
MS.gene70482.t1 MTR_3g114410 40.404 198 105 4 2 192 390 581 3.15e-38 139
MS.gene70482.t1 MTR_8g005710 41.885 191 102 6 4 193 344 526 3.51e-38 139
MS.gene70482.t1 MTR_7g034380 43.229 192 100 6 3 193 336 519 3.93e-38 139
MS.gene70482.t1 MTR_8g042670 40.314 191 105 4 6 191 268 454 2.09e-37 137
MS.gene70482.t1 MTR_1g048110 41.304 184 95 5 12 191 383 557 2.47e-37 137
MS.gene70482.t1 MTR_4g053630 40.722 194 105 5 3 191 287 475 2.75e-37 137
MS.gene70482.t1 MTR_4g053630 40.722 194 105 5 3 191 364 552 3.95e-37 137
MS.gene70482.t1 MTR_8g042670 40.314 191 105 4 6 191 392 578 4.33e-37 137
MS.gene70482.t1 MTR_8g072440 37.879 198 100 6 2 191 352 534 7.43e-37 135
MS.gene70482.t1 MTR_8g042710 37.824 193 110 6 6 191 395 584 7.69e-37 136
MS.gene70482.t1 MTR_8g072440 37.879 198 100 6 2 191 394 576 1.15e-36 135
MS.gene70482.t1 MTR_8g083220 37.056 197 103 5 6 194 416 599 2.16e-36 134
MS.gene70482.t1 MTR_5g011280 41.146 192 101 3 5 191 391 575 5.91e-36 133
MS.gene70482.t1 MTR_1g006990 41.304 184 95 7 12 191 387 561 1.20e-35 132
MS.gene70482.t1 MTR_3g104930 40.000 195 107 5 6 194 390 580 1.46e-35 132
MS.gene70482.t1 MTR_7g075890 38.462 195 106 6 3 193 540 724 2.06e-35 132
MS.gene70482.t1 MTR_1g007030 40.761 184 96 7 12 191 385 559 1.10e-34 130
MS.gene70482.t1 MTR_6g055570 41.622 185 97 6 11 191 379 556 1.30e-34 129
MS.gene70482.t1 MTR_4g071560 33.505 194 121 3 6 192 328 520 8.50e-33 124
MS.gene70482.t1 MTR_8g006680 42.408 191 91 7 4 193 376 548 9.66e-33 124
MS.gene70482.t1 MTR_8g005300 42.408 191 91 7 4 193 376 548 9.66e-33 124
MS.gene70482.t1 MTR_8g005640 42.408 191 91 7 4 193 376 548 9.66e-33 124
MS.gene70482.t1 MTR_4g053635 38.462 195 105 8 3 191 310 495 2.09e-32 123
MS.gene70482.t1 MTR_7g104200 38.421 190 105 5 6 191 385 566 1.26e-31 121
MS.gene70482.t1 MTR_3g010080 39.583 192 103 8 4 193 377 557 4.16e-31 119
MS.gene70482.t1 MTR_2g042640 38.624 189 90 5 4 191 327 490 4.79e-31 119
MS.gene70482.t1 MTR_1g078110 41.026 195 102 6 4 191 383 571 5.78e-30 116
MS.gene70482.t1 MTR_2g042650 35.644 202 80 6 4 192 306 470 1.22e-29 115
MS.gene70482.t1 MTR_8g027260 45.902 122 65 1 72 193 359 479 4.45e-29 114
MS.gene70482.t1 MTR_8g024420 40.107 187 97 6 15 191 357 538 1.54e-28 112
MS.gene70482.t1 MTR_6g055410 37.306 193 88 9 4 191 374 538 2.16e-28 112
MS.gene70482.t1 MTR_6g075370 33.505 194 69 4 2 194 384 518 4.98e-28 110
MS.gene70482.t1 MTR_3g114420 41.791 134 77 1 61 194 452 584 8.11e-28 110
MS.gene70482.t1 MTR_3g464790 38.182 165 87 2 30 194 401 550 3.63e-27 108
MS.gene70482.t1 MTR_1g079120 43.114 167 72 4 37 192 422 576 5.05e-27 108
MS.gene70482.t1 MTR_8g024390 34.928 209 115 7 5 198 384 586 2.06e-26 106
MS.gene70482.t1 MTR_2g049200 38.071 197 103 6 5 191 386 573 7.16e-26 104
MS.gene70482.t1 MTR_8g024380 39.130 207 90 9 5 191 385 575 9.14e-25 101
MS.gene70482.t1 MTR_7g079310 44.000 125 67 2 70 192 459 582 1.54e-24 100
MS.gene70482.t1 MTR_7g118080 35.484 186 105 5 15 191 393 572 8.33e-24 99.0
MS.gene70482.t1 MTR_2g044630 35.938 192 89 8 4 191 371 532 1.85e-23 97.8
MS.gene70482.t1 MTR_7g079300 43.182 132 73 2 62 191 452 583 1.65e-22 95.1
MS.gene70482.t1 MTR_8g024370 37.949 195 111 6 5 191 381 573 1.78e-21 92.0
MS.gene70482.t1 MTR_5g044060 46.465 99 43 2 98 191 11 104 1.18e-20 85.1
MS.gene70482.t1 MTR_4g126230 32.886 149 97 3 47 194 3 149 2.41e-20 85.9
MS.gene70482.t1 MTR_4g127480 34.579 214 109 8 6 191 422 632 1.32e-18 84.0
MS.gene70482.t1 MTR_3g452290 28.947 190 88 5 4 193 282 424 4.42e-18 82.0
MS.gene70482.t1 MTR_3g451220 28.947 190 88 5 4 193 282 424 4.42e-18 82.0
MS.gene70482.t1 MTR_2g037850 33.962 212 105 9 6 187 422 628 8.19e-18 81.6
MS.gene70482.t1 MTR_4g132620 42.157 102 47 3 100 194 542 638 7.88e-17 78.6
MS.gene70482.t1 MTR_3g114140 40.196 102 60 1 78 179 169 269 2.67e-16 76.6
MS.gene70482.t1 MTR_8g089230 29.767 215 119 9 6 191 452 663 7.46e-16 75.9
MS.gene70482.t1 MTR_4g053665 41.250 80 45 1 119 198 1 78 1.28e-15 72.8
MS.gene70482.t1 MTR_2g046740 34.615 104 60 3 96 194 558 658 2.66e-13 68.6
MS.gene70482.t1 MTR_7g097250 27.922 154 86 3 24 177 48 176 5.00e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70482.t1 AT5G59810 62.887 194 69 1 5 195 410 603 6.18e-73 235
MS.gene70482.t1 AT2G04160 58.763 194 77 1 1 191 400 593 7.46e-71 229
MS.gene70482.t1 AT5G67360 48.187 193 97 1 5 194 385 577 7.71e-56 189
MS.gene70482.t1 AT2G05920 47.917 192 97 1 3 191 377 568 4.31e-55 187
MS.gene70482.t1 AT3G14067 47.150 193 98 2 3 191 386 578 1.20e-51 177
MS.gene70482.t1 AT4G34980 44.271 192 104 1 3 191 379 570 6.66e-50 172
MS.gene70482.t1 AT5G51750 44.271 192 104 1 3 191 401 592 4.23e-49 171
MS.gene70482.t1 AT3G14240 44.949 198 100 2 3 191 384 581 3.49e-48 168
MS.gene70482.t1 AT1G04110 43.750 192 105 1 3 191 393 584 1.05e-47 166
MS.gene70482.t1 AT1G01900 41.146 192 109 2 5 193 396 586 1.94e-44 157
MS.gene70482.t1 AT5G59090 43.979 191 98 5 5 195 374 555 3.90e-42 150
MS.gene70482.t1 AT5G59100 42.408 191 101 4 2 191 378 560 1.28e-41 149
MS.gene70482.t1 AT4G00230 40.415 193 110 2 3 195 385 572 2.07e-41 147
MS.gene70482.t1 AT5G59090 44.385 187 95 5 5 191 372 549 2.49e-41 149
MS.gene70482.t1 AT5G59090 44.385 187 95 5 5 191 374 551 2.53e-41 149
MS.gene70482.t1 AT5G45650 39.153 189 112 1 6 191 422 610 2.72e-41 149
MS.gene70482.t1 AT5G45650 39.153 189 112 1 6 191 422 610 2.72e-41 149
MS.gene70482.t1 AT4G00230 40.838 191 108 2 3 193 385 570 1.37e-40 146
MS.gene70482.t1 AT5G58840 43.478 161 89 2 42 202 384 542 8.59e-39 140
MS.gene70482.t1 AT1G20160 38.579 197 113 3 3 194 349 542 1.48e-38 140
MS.gene70482.t1 AT1G20160 38.579 197 113 3 3 194 388 581 1.81e-38 140
MS.gene70482.t1 AT5G59120 42.781 187 98 5 5 191 373 550 2.45e-38 140
MS.gene70482.t1 AT3G46840 41.176 187 101 4 5 191 382 559 5.19e-38 139
MS.gene70482.t1 AT3G46850 41.176 187 101 4 5 191 382 559 5.73e-37 136
MS.gene70482.t1 AT5G58840 44.667 150 81 2 42 191 384 531 2.83e-36 134
MS.gene70482.t1 AT5G59190 37.000 200 116 5 2 198 332 524 3.89e-36 134
MS.gene70482.t1 AT5G58820 41.558 154 83 3 39 191 380 527 6.15e-34 127
MS.gene70482.t1 AT5G03620 39.286 196 103 3 6 192 388 576 1.18e-33 126
MS.gene70482.t1 AT1G20150 40.933 193 102 6 6 191 395 582 5.13e-33 125
MS.gene70482.t1 AT5G58830 38.462 182 97 4 11 191 363 530 6.07e-33 125
MS.gene70482.t1 AT5G03620 38.119 202 109 3 6 198 388 582 1.13e-32 124
MS.gene70482.t1 AT5G45640 35.149 202 102 4 5 191 385 572 3.34e-31 120
MS.gene70482.t1 AT4G10550 39.683 189 96 7 13 194 414 591 2.31e-30 117
MS.gene70482.t1 AT4G10550 39.683 189 96 7 13 194 358 535 2.78e-30 117
MS.gene70482.t1 AT4G10550 39.683 189 96 7 13 194 358 535 2.78e-30 117
MS.gene70482.t1 AT4G10550 39.683 189 96 7 13 194 430 607 3.07e-30 117
MS.gene70482.t1 AT4G10540 42.767 159 80 5 37 194 440 588 1.63e-29 115
MS.gene70482.t1 AT5G59130 39.683 189 102 6 3 191 374 550 3.70e-29 114
MS.gene70482.t1 AT5G59130 39.683 189 102 6 3 191 370 546 4.30e-29 114
MS.gene70482.t1 AT5G59130 39.683 189 102 6 3 191 335 511 4.53e-29 114
MS.gene70482.t1 AT4G21650 40.782 179 90 6 17 194 421 584 5.41e-29 114
MS.gene70482.t1 AT5G67090 38.220 191 108 5 7 191 375 561 1.66e-28 112
MS.gene70482.t1 AT1G32950 37.000 200 108 7 3 194 397 586 2.56e-28 111
MS.gene70482.t1 AT1G32950 37.000 200 108 7 3 194 346 535 2.78e-28 111
MS.gene70482.t1 AT4G21630 40.107 187 93 8 12 194 406 577 6.66e-28 110
MS.gene70482.t1 AT4G10520 36.022 186 104 5 13 194 395 569 1.09e-27 110
MS.gene70482.t1 AT4G10510 38.095 189 100 6 13 194 356 534 2.72e-27 108
MS.gene70482.t1 AT4G10510 38.095 189 100 6 13 194 400 578 2.86e-27 108
MS.gene70482.t1 AT4G10510 38.095 189 100 6 13 194 341 519 3.06e-27 108
MS.gene70482.t1 AT4G10510 38.095 189 100 6 13 194 412 590 3.10e-27 108
MS.gene70482.t1 AT1G32970 38.710 186 96 7 16 194 373 547 3.26e-27 108
MS.gene70482.t1 AT4G26330 38.562 153 92 2 52 202 412 564 3.37e-27 108
MS.gene70482.t1 AT4G26330 38.562 153 92 2 52 202 398 550 3.55e-27 108
MS.gene70482.t1 AT1G32940 38.384 198 104 7 3 192 398 585 1.01e-26 107
MS.gene70482.t1 AT1G32940 37.500 200 107 7 3 194 347 536 4.11e-26 105
MS.gene70482.t1 AT1G32940 37.500 200 107 7 3 194 347 536 4.11e-26 105
MS.gene70482.t1 AT1G32940 37.500 200 107 7 3 194 398 587 4.61e-26 105
MS.gene70482.t1 AT1G66210 38.919 185 94 6 11 191 402 571 9.17e-26 104
MS.gene70482.t1 AT4G21640 40.000 160 78 4 38 194 407 551 1.78e-25 103
MS.gene70482.t1 AT1G32960 34.000 200 114 8 3 194 401 590 5.95e-25 102
MS.gene70482.t1 AT5G59130 37.566 189 96 7 3 191 374 540 2.88e-24 100
MS.gene70482.t1 AT5G11940 33.333 180 105 3 17 191 403 572 5.77e-24 99.4
MS.gene70482.t1 AT4G21326 37.821 156 87 2 39 194 367 512 7.59e-24 99.0
MS.gene70482.t1 AT1G66220 31.771 192 104 6 10 194 398 569 8.61e-24 99.0
MS.gene70482.t1 AT2G19170 35.349 215 106 10 6 191 418 628 2.15e-20 89.0
MS.gene70482.t1 AT2G19170 35.349 215 106 10 6 191 418 628 2.15e-20 89.0
MS.gene70482.t1 AT4G30020 34.419 215 108 10 6 191 419 629 3.10e-20 88.6
MS.gene70482.t1 AT4G30020 34.419 215 108 10 6 191 419 629 3.10e-20 88.6
MS.gene70482.t1 AT4G30020 34.419 215 108 10 6 191 419 629 3.10e-20 88.6
MS.gene70482.t1 AT4G30020 34.419 215 108 10 6 191 419 629 3.10e-20 88.6
MS.gene70482.t1 AT4G10530 31.148 183 98 5 16 194 402 560 5.16e-19 85.1
MS.gene70482.t1 AT2G39850 39.683 126 62 6 75 191 462 582 7.78e-19 84.3
MS.gene70482.t1 AT1G30600 31.628 215 115 8 6 191 430 641 1.40e-18 84.0
MS.gene70482.t1 AT4G21323 32.632 190 114 3 10 194 435 615 1.59e-18 83.6
MS.gene70482.t1 AT4G15040 32.804 189 113 7 6 191 335 512 1.97e-18 83.2
MS.gene70482.t1 AT4G15040 32.804 189 113 7 6 191 335 512 1.97e-18 83.2
MS.gene70482.t1 AT1G62340 31.081 222 116 10 4 194 438 653 5.63e-16 76.3
MS.gene70482.t1 AT5G44530 28.899 218 117 9 6 191 440 651 4.01e-15 73.6
MS.gene70482.t1 AT5G44530 28.899 218 117 9 6 191 440 651 4.07e-15 73.6
MS.gene70482.t1 AT1G20160 35.000 120 71 2 6 120 391 508 1.23e-14 72.0
MS.gene70482.t1 AT4G20430 28.837 215 121 8 6 191 455 666 1.04e-13 69.7
MS.gene70482.t1 AT4G20430 28.837 215 121 8 6 191 455 666 1.04e-13 69.7
MS.gene70482.t1 AT4G20430 35.052 97 55 2 100 191 549 642 7.51e-12 64.3

Find 57 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGAACCTTGTATCCTTCT+TGG 0.224032 3.1:+66804778 MS.gene70482:CDS
ATCTCGGGTACAATGGTATT+TGG 0.284686 3.1:-66804503 None:intergenic
CCTCACATTTCGGGAATTGC+AGG 0.302985 3.1:+66804750 MS.gene70482:CDS
TGTGATCCAGAGTCCCATTC+TGG 0.311076 3.1:-66804097 None:intergenic
TACAATGGTATTTGGCCCTT+TGG 0.331318 3.1:-66804495 None:intergenic
ATGTCAAGCCCTCACATTTC+GGG 0.340640 3.1:+66804741 MS.gene70482:CDS
CATGTCAAGCCCTCACATTT+CGG 0.341153 3.1:+66804740 MS.gene70482:CDS
ATTTCCACTATTGTTATCAT+TGG 0.342216 3.1:-66804213 None:intergenic
CCTTATCCACTCCTCCATTC+AGG 0.352074 3.1:-66804148 None:intergenic
TTGTCGATCTCTTCATTAGT+TGG 0.405128 3.1:-66804681 None:intergenic
ACACCTGGTGCTGTGATATC+AGG 0.406349 3.1:-66804624 None:intergenic
CTTGCCAATGATAACAATAG+TGG 0.413339 3.1:+66804209 MS.gene70482:CDS
GAGAAATTTATGTTAGAAGC+AGG 0.435055 3.1:-66804263 None:intergenic
TGCAGCGAGCTTTGCCAGAA+TGG 0.435817 3.1:+66804083 MS.gene70482:intron
CTTGTATCCTTCTTGGAGTC+CGG 0.441288 3.1:+66804785 MS.gene70482:CDS
TGAGTAAGACAAATTGAATT+CGG 0.461464 3.1:-66804707 None:intergenic
GATTAACACCTTTAGAATCT+CGG 0.462819 3.1:-66804519 None:intergenic
CCTGAATGGAGGAGTGGATA+AGG 0.471847 3.1:+66804148 MS.gene70482:CDS
TCGAAAAGAGAAGAATGAAA+AGG 0.479236 3.1:+66803472 None:intergenic
AAAATAGTAGTGTGCCTGAA+TGG 0.485193 3.1:+66804134 MS.gene70482:CDS
GCAGCGAGCTTTGCCAGAAT+GGG 0.489122 3.1:+66804084 MS.gene70482:intron
ATTAACACCTTTAGAATCTC+GGG 0.499143 3.1:-66804518 None:intergenic
GGATGAAAATATTGCCATGA+TGG 0.505910 3.1:-66804474 None:intergenic
CACTATTGTTATCATTGGCA+AGG 0.506923 3.1:-66804208 None:intergenic
CAGCCTGATATCACAGCACC+AGG 0.512049 3.1:+66804621 MS.gene70482:intron
TCTAACATAAATTTCTCTGA+TGG 0.516359 3.1:+66804269 MS.gene70482:CDS
CTGAATGGAGGAGTGGATAA+GGG 0.525356 3.1:+66804149 MS.gene70482:CDS
GCTCTTATAGCTGGTGCTGT+AGG 0.530131 3.1:+66804179 MS.gene70482:CDS
AAGGATACAAGGTTCTCAAA+AGG 0.532636 3.1:-66804773 None:intergenic
GGAGAACAAGCTCTTATAGC+TGG 0.537634 3.1:+66804170 MS.gene70482:CDS
ATTCAATTTGTCTTACTCAC+CGG 0.545243 3.1:+66804711 MS.gene70482:CDS
GCTTTGCCAGAATGGGACTC+TGG 0.545631 3.1:+66804091 MS.gene70482:CDS
CATTGTACCCGAGATTCTAA+AGG 0.548172 3.1:+66804511 MS.gene70482:CDS
TGGCTCTTCAGCTTCAGTGA+AGG 0.552957 3.1:-66804661 None:intergenic
GATGAAAATATTGCCATGAT+GGG 0.560543 3.1:-66804473 None:intergenic
TATAGCTGGTGCTGTAGGAG+TGG 0.566698 3.1:+66804184 MS.gene70482:CDS
ATAGCAGATTTAATAGCAGC+CGG 0.569981 3.1:-66804804 None:intergenic
CAAGAGTTTCTTCTTACCTG+TGG 0.573388 3.1:-66804832 None:intergenic
CGGACTCCAAGAAGGATACA+AGG 0.588458 3.1:-66804784 None:intergenic
CTTTAGAATCTCGGGTACAA+TGG 0.591821 3.1:-66804510 None:intergenic
AAATCTGCTATCATGACCAC+AGG 0.593204 3.1:+66804816 MS.gene70482:CDS
CGAAATGTGAGGGCTTGACA+TGG 0.595430 3.1:-66804739 None:intergenic
AGGGCTTGACATGGATGTGC+CGG 0.596264 3.1:-66804730 None:intergenic
CTGCAATTCCCGAAATGTGA+GGG 0.596326 3.1:-66804749 None:intergenic
ATAGCAGCCGGACTCCAAGA+AGG 0.603386 3.1:-66804792 None:intergenic
TCTGGATCACAAGAAGGTGA+AGG 0.614201 3.1:+66804109 MS.gene70482:CDS
TGGGACTCTGGATCACAAGA+AGG 0.633879 3.1:+66804103 MS.gene70482:CDS
CTGGATCACAAGAAGGTGAA+GGG 0.633941 3.1:+66804110 MS.gene70482:CDS
GCTGCTATAACCGACACACC+TGG 0.638678 3.1:-66804639 None:intergenic
TTAGAAGCAGGAAGAACATG+AGG 0.651996 3.1:-66804251 None:intergenic
ATAGTAGTGTGCCTGAATGG+AGG 0.653182 3.1:+66804137 MS.gene70482:CDS
GGATGTGTAATATAAGCCAC+TGG 0.654484 3.1:-66804422 None:intergenic
TATCACAGCACCAGGTGTGT+CGG 0.657844 3.1:+66804629 MS.gene70482:CDS
TGAAAATATTGCCATGATGG+GGG 0.660947 3.1:-66804471 None:intergenic
CCTGCAATTCCCGAAATGTG+AGG 0.663023 3.1:-66804750 None:intergenic
ATGAAAATATTGCCATGATG+GGG 0.674957 3.1:-66804472 None:intergenic
AGTGTGCCTGAATGGAGGAG+TGG 0.692602 3.1:+66804142 MS.gene70482:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTAATGATATTATATTTTT+TGG - chr3.1:66804000-66804019 None:intergenic 10.0%
!! AAATCATTTCATAAATATTC+CGG + chr3.1:66803539-66803558 MS.gene70482:intron 15.0%
!! AATATATCATCAAAAGAAGT+TGG - chr3.1:66803754-66803773 None:intergenic 20.0%
!! TTACTGTAATTTCTATCAAT+AGG + chr3.1:66803787-66803806 MS.gene70482:intron 20.0%
! ACATAACAATAGATTACAAG+AGG - chr3.1:66804569-66804588 None:intergenic 25.0%
! ATTTCCACTATTGTTATCAT+TGG - chr3.1:66804216-66804235 None:intergenic 25.0%
! CAACAACAATATTTGTAAAC+CGG - chr3.1:66803561-66803580 None:intergenic 25.0%
! TCAATTAGATCAAGTTACAT+TGG - chr3.1:66804059-66804078 None:intergenic 25.0%
! TCTAACATAAATTTCTCTGA+TGG + chr3.1:66804269-66804288 MS.gene70482:CDS 25.0%
! TGAGTAAGACAAATTGAATT+CGG - chr3.1:66804710-66804729 None:intergenic 25.0%
!! ATAATTGGGTAGAATTTTTG+TGG - chr3.1:66803925-66803944 None:intergenic 25.0%
!! ATGCATTTTGTTAGAATTTC+TGG + chr3.1:66803516-66803535 MS.gene70482:intron 25.0%
!! TAATTGGGTAGAATTTTTGT+GGG - chr3.1:66803924-66803943 None:intergenic 25.0%
!!! CATCTGTTGCTTTAATAATT+GGG - chr3.1:66803939-66803958 None:intergenic 25.0%
!!! TTAGTATGCAATTTTGTTGT+TGG - chr3.1:66804446-66804465 None:intergenic 25.0%
ACACTTAAAACTTGATCGTT+TGG + chr3.1:66804382-66804401 MS.gene70482:intron 30.0%
ATGAAAATATTGCCATGATG+GGG - chr3.1:66804475-66804494 None:intergenic 30.0%
ATTCAATTTGTCTTACTCAC+CGG + chr3.1:66804711-66804730 MS.gene70482:CDS 30.0%
GAGAAATTTATGTTAGAAGC+AGG - chr3.1:66804266-66804285 None:intergenic 30.0%
GATGAAAATATTGCCATGAT+GGG - chr3.1:66804476-66804495 None:intergenic 30.0%
TAAAGCAACAGATGCTAAAT+TGG + chr3.1:66803945-66803964 MS.gene70482:intron 30.0%
TGACTCTCAATTATCTTGTT+TGG + chr3.1:66803861-66803880 MS.gene70482:intron 30.0%
TTCACTAGTTATGTTCTTCT+TGG + chr3.1:66803685-66803704 MS.gene70482:intron 30.0%
! ATCGTTTGGACTTAACTTTT+AGG + chr3.1:66804396-66804415 MS.gene70482:intron 30.0%
! ATCTTGTTTGGTTCAATCAA+CGG + chr3.1:66803873-66803892 MS.gene70482:intron 30.0%
! ATGGCAATATTTTCATCCAA+AGG + chr3.1:66804479-66804498 MS.gene70482:CDS 30.0%
! TGGCAATATTTTCATCCAAA+GGG + chr3.1:66804480-66804499 MS.gene70482:CDS 30.0%
!! ATTAACACCTTTAGAATCTC+GGG - chr3.1:66804521-66804540 None:intergenic 30.0%
!! GATTAACACCTTTAGAATCT+CGG - chr3.1:66804522-66804541 None:intergenic 30.0%
!! GCATCTGTTGCTTTAATAAT+TGG - chr3.1:66803940-66803959 None:intergenic 30.0%
AAAATAGTAGTGTGCCTGAA+TGG + chr3.1:66804134-66804153 MS.gene70482:CDS 35.0%
AAGGATACAAGGTTCTCAAA+AGG - chr3.1:66804776-66804795 None:intergenic 35.0%
AGAAATCTAGCAGTCTAGTT+TGG + chr3.1:66804328-66804347 MS.gene70482:intron 35.0%
AGTTATGTTCTTCTTGGCAA+CGG + chr3.1:66803691-66803710 MS.gene70482:intron 35.0%
ATAGCAGATTTAATAGCAGC+CGG - chr3.1:66804807-66804826 None:intergenic 35.0%
CACTATTGTTATCATTGGCA+AGG - chr3.1:66804211-66804230 None:intergenic 35.0%
CTTGCCAATGATAACAATAG+TGG + chr3.1:66804209-66804228 MS.gene70482:CDS 35.0%
GGATGAAAATATTGCCATGA+TGG - chr3.1:66804477-66804496 None:intergenic 35.0%
TGAAAATATTGCCATGATGG+GGG - chr3.1:66804474-66804493 None:intergenic 35.0%
TTGTCGATCTCTTCATTAGT+TGG - chr3.1:66804684-66804703 None:intergenic 35.0%
! TCTTGTTTGGTTCAATCAAC+GGG + chr3.1:66803874-66803893 MS.gene70482:intron 35.0%
AAATCTGCTATCATGACCAC+AGG + chr3.1:66804816-66804835 MS.gene70482:CDS 40.0%
ATCTCGGGTACAATGGTATT+TGG - chr3.1:66804506-66804525 None:intergenic 40.0%
CAAGAGTTTCTTCTTACCTG+TGG - chr3.1:66804835-66804854 None:intergenic 40.0%
CATTGTACCCGAGATTCTAA+AGG + chr3.1:66804511-66804530 MS.gene70482:CDS 40.0%
GGATGTGTAATATAAGCCAC+TGG - chr3.1:66804425-66804444 None:intergenic 40.0%
TACAATGGTATTTGGCCCTT+TGG - chr3.1:66804498-66804517 None:intergenic 40.0%
TGAGAACCTTGTATCCTTCT+TGG + chr3.1:66804778-66804797 MS.gene70482:CDS 40.0%
TTAGAAGCAGGAAGAACATG+AGG - chr3.1:66804254-66804273 None:intergenic 40.0%
TTTGATGCAGTAGCCTCATT+TGG - chr3.1:66803616-66803635 None:intergenic 40.0%
! CTTGTTTGGTTCAATCAACG+GGG + chr3.1:66803875-66803894 MS.gene70482:intron 40.0%
! TTGTTTGGTTCAATCAACGG+GGG + chr3.1:66803876-66803895 MS.gene70482:intron 40.0%
!! CTTAACTTTTAGGTCTCCAG+TGG + chr3.1:66804406-66804425 MS.gene70482:intron 40.0%
!! CTTTAGAATCTCGGGTACAA+TGG - chr3.1:66804513-66804532 None:intergenic 40.0%
ATAGTAGTGTGCCTGAATGG+AGG + chr3.1:66804137-66804156 MS.gene70482:CDS 45.0%
ATGTCAAGCCCTCACATTTC+GGG + chr3.1:66804741-66804760 MS.gene70482:CDS 45.0%
CATGTCAAGCCCTCACATTT+CGG + chr3.1:66804740-66804759 MS.gene70482:CDS 45.0%
CTGAATGGAGGAGTGGATAA+GGG + chr3.1:66804149-66804168 MS.gene70482:CDS 45.0%
CTGCAATTCCCGAAATGTGA+GGG - chr3.1:66804752-66804771 None:intergenic 45.0%
CTGGATCACAAGAAGGTGAA+GGG + chr3.1:66804110-66804129 MS.gene70482:CDS 45.0%
CTTGTATCCTTCTTGGAGTC+CGG + chr3.1:66804785-66804804 MS.gene70482:CDS 45.0%
GAACTCTCTATCCATTGTGC+TGG - chr3.1:66803668-66803687 None:intergenic 45.0%
GCACCAACTGTGATATACCA+AGG - chr3.1:66803646-66803665 None:intergenic 45.0%
GCTCCTTGGTATATCACAGT+TGG + chr3.1:66803640-66803659 MS.gene70482:intron 45.0%
GGAGAACAAGCTCTTATAGC+TGG + chr3.1:66804170-66804189 MS.gene70482:CDS 45.0%
TCTGGATCACAAGAAGGTGA+AGG + chr3.1:66804109-66804128 MS.gene70482:CDS 45.0%
TGGCAACGGTTTAAGCTTCA+AGG + chr3.1:66803705-66803724 MS.gene70482:intron 45.0%
! CTGCATCAAATCTAGCTCCT+TGG + chr3.1:66803626-66803645 MS.gene70482:intron 45.0%
! TCTAGCAGTCTAGTTTGGTG+TGG + chr3.1:66804333-66804352 MS.gene70482:intron 45.0%
!! TGGCAATGATGGACCAAATG+AGG + chr3.1:66803600-66803619 MS.gene70482:intron 45.0%
CCTCACATTTCGGGAATTGC+AGG + chr3.1:66804750-66804769 MS.gene70482:CDS 50.0%
CCTGAATGGAGGAGTGGATA+AGG + chr3.1:66804148-66804167 MS.gene70482:CDS 50.0%
CCTGCAATTCCCGAAATGTG+AGG - chr3.1:66804753-66804772 None:intergenic 50.0%
CCTTATCCACTCCTCCATTC+AGG - chr3.1:66804151-66804170 None:intergenic 50.0%
CGAAATGTGAGGGCTTGACA+TGG - chr3.1:66804742-66804761 None:intergenic 50.0%
CGGACTCCAAGAAGGATACA+AGG - chr3.1:66804787-66804806 None:intergenic 50.0%
TACTAAACCAGCCCCCATCA+TGG + chr3.1:66804460-66804479 MS.gene70482:CDS 50.0%
TATCACAGCACCAGGTGTGT+CGG + chr3.1:66804629-66804648 MS.gene70482:CDS 50.0%
TGGCTCTTCAGCTTCAGTGA+AGG - chr3.1:66804664-66804683 None:intergenic 50.0%
TGGGACTCTGGATCACAAGA+AGG + chr3.1:66804103-66804122 MS.gene70482:CDS 50.0%
TGTGATCCAGAGTCCCATTC+TGG - chr3.1:66804100-66804119 None:intergenic 50.0%
! AATATTGCCATGATGGGGGC+TGG - chr3.1:66804470-66804489 None:intergenic 50.0%
!! ACACCTGGTGCTGTGATATC+AGG - chr3.1:66804627-66804646 None:intergenic 50.0%
!! GCTCTTATAGCTGGTGCTGT+AGG + chr3.1:66804179-66804198 MS.gene70482:CDS 50.0%
!! TATAGCTGGTGCTGTAGGAG+TGG + chr3.1:66804184-66804203 MS.gene70482:CDS 50.0%
AGGGCTTGACATGGATGTGC+CGG - chr3.1:66804733-66804752 None:intergenic 55.0%
AGTGTGCCTGAATGGAGGAG+TGG + chr3.1:66804142-66804161 MS.gene70482:CDS 55.0%
ATAGCAGCCGGACTCCAAGA+AGG - chr3.1:66804795-66804814 None:intergenic 55.0%
CAGCCTGATATCACAGCACC+AGG + chr3.1:66804621-66804640 MS.gene70482:intron 55.0%
GCAGCGAGCTTTGCCAGAAT+GGG + chr3.1:66804084-66804103 MS.gene70482:intron 55.0%
GCTGCTATAACCGACACACC+TGG - chr3.1:66804642-66804661 None:intergenic 55.0%
GCTTGCTCTGCTGGCAATGA+TGG + chr3.1:66803589-66803608 MS.gene70482:intron 55.0%
GCTTTGCCAGAATGGGACTC+TGG + chr3.1:66804091-66804110 MS.gene70482:CDS 55.0%
TGCAGCGAGCTTTGCCAGAA+TGG + chr3.1:66804083-66804102 MS.gene70482:intron 55.0%
! GTTGTTGCTGCTTGCTCTGC+TGG + chr3.1:66803580-66803599 MS.gene70482:intron 55.0%
!! CACAGTTGGTGCCAGCACAA+TGG + chr3.1:66803654-66803673 MS.gene70482:intron 55.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 66803486 66804884 66803486 ID=MS.gene70482
chr3.1 mRNA 66803486 66804884 66803486 ID=MS.gene70482.t1;Parent=MS.gene70482
chr3.1 exon 66803486 66803493 66803486 ID=MS.gene70482.t1.exon1;Parent=MS.gene70482.t1
chr3.1 CDS 66803486 66803493 66803486 ID=cds.MS.gene70482.t1;Parent=MS.gene70482.t1
chr3.1 exon 66804088 66804324 66804088 ID=MS.gene70482.t1.exon2;Parent=MS.gene70482.t1
chr3.1 CDS 66804088 66804324 66804088 ID=cds.MS.gene70482.t1;Parent=MS.gene70482.t1
chr3.1 exon 66804418 66804532 66804418 ID=MS.gene70482.t1.exon3;Parent=MS.gene70482.t1
chr3.1 CDS 66804418 66804532 66804418 ID=cds.MS.gene70482.t1;Parent=MS.gene70482.t1
chr3.1 exon 66804624 66804884 66804624 ID=MS.gene70482.t1.exon4;Parent=MS.gene70482.t1
chr3.1 CDS 66804624 66804884 66804624 ID=cds.MS.gene70482.t1;Parent=MS.gene70482.t1
Gene Sequence

>MS.gene70482

ATGAAAAGGTTTCTCATATGAGTTTTAGAAATGCATTTTGTTAGAATTTCTGGAAATCATTTCATAAATATTCCGGTTTACAAATATTGTTGTTGTTGTTGCTGCTTGCTCTGCTGGCAATGATGGACCAAATGAGGCTACTGCATCAAATCTAGCTCCTTGGTATATCACAGTTGGTGCCAGCACAATGGATAGAGAGTTCACTAGTTATGTTCTTCTTGGCAACGGTTTAAGCTTCAAGGTTTGTCTCTTTATCTAGTTATGTCCAACTTCTTTTGATGATATATTAAATATATACAAGTTACTGTAATTTCTATCAATAGGATGAAATTAAGATATTTTCAATTTTTGTTTATTGCAATTACATGAATATAATGACTCTCAATTATCTTGTTTGGTTCAATCAACGGGGGAAAGCTTATCGACTGCAAGATTCCCACAAAAATTCTACCCAATTATTAAAGCAACAGATGCTAAATTGGCAAGTGCAACAAATGAAAATGCGTATGTACCAAAAAATATAATATCATTAGTCATTATAGTTTAATAGTGAATAAAATTTATGTCAAGCCAATGTAACTTGATCTAATTGAACAATGCAGCGAGCTTTGCCAGAATGGGACTCTGGATCACAAGAAGGTGAAGGGTAAAATAGTAGTGTGCCTGAATGGAGGAGTGGATAAGGGAGAACAAGCTCTTATAGCTGGTGCTGTAGGAGTGGTCCTTGCCAATGATAACAATAGTGGAAATGACATTGAAGCTGAACCTCATGTTCTTCCTGCTTCTAACATAAATTTCTCTGATGGTGTAGAAGTCTTTCATTATATCAACTCTTCAAAGTAAGAAATCTAGCAGTCTAGTTTGGTGTGGTCTTTAATTAGAGCAAAAAATATATAACACTTAAAACTTGATCGTTTGGACTTAACTTTTAGGTCTCCAGTGGCTTATATTACACATCCAACAACAAAATTGCATACTAAACCAGCCCCCATCATGGCAATATTTTCATCCAAAGGGCCAAATACCATTGTACCCGAGATTCTAAAGGTGTTAATCATTACATACACAAACTGTGTTTTTCCTCTTGTAATCTATTGTTATGTGTCTGATATCTAACAACTATTGTTTACATTTTCAGCCTGATATCACAGCACCAGGTGTGTCGGTTATAGCAGCCTTCACTGAAGCTGAAGAGCCAACTAATGAAGAGATCGACAATCGCCGAATTCAATTTGTCTTACTCACCGGCACATCCATGTCAAGCCCTCACATTTCGGGAATTGCAGGCCTTTTGAGAACCTTGTATCCTTCTTGGAGTCCGGCTGCTATTAAATCTGCTATCATGACCACAGGTAAGAAGAAACTCTTGAAGTTTCTCATACTTCATGTCATTTCTTGA

Protein sequence

>MS.gene70482.t1

MKSELCQNGTLDHKKVKGKIVVCLNGGVDKGEQALIAGAVGVVLANDNNSGNDIEAEPHVLPASNINFSDGVEVFHYINSSKSPVAYITHPTTKLHTKPAPIMAIFSSKGPNTIVPEILKPDITAPGVSVIAAFTEAEEPTNEEIDNRRIQFVLLTGTSMSSPHISGIAGLLRTLYPSWSPAAIKSAIMTTGKKKLLKFLILHVIS