Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71908.t1 | XP_017441072.1 | 75.1 | 317 | 78 | 1 | 2 | 317 | 456 | 772 | 3.10E-132 | 481.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71908.t1 | P34811 | 74.1 | 317 | 81 | 1 | 2 | 317 | 464 | 780 | 8.1e-134 | 478.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71908.t1 | A0A0L9TR12 | 75.1 | 317 | 78 | 1 | 2 | 317 | 456 | 772 | 2.2e-132 | 481.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049137 | MS.gene71908 | 0.838043 | 3.63E-57 | -1.69E-46 |
MS.gene049171 | MS.gene71908 | 0.865249 | 6.77E-65 | -1.69E-46 |
MS.gene049173 | MS.gene71908 | 0.835997 | 1.21E-56 | -1.69E-46 |
MS.gene049217 | MS.gene71908 | 0.830967 | 2.18E-55 | -1.69E-46 |
MS.gene049222 | MS.gene71908 | 0.8642 | 1.44E-64 | -1.69E-46 |
MS.gene049285 | MS.gene71908 | 0.837115 | 6.29E-57 | -1.69E-46 |
MS.gene049320 | MS.gene71908 | 0.838802 | 2.32E-57 | -1.69E-46 |
MS.gene049396 | MS.gene71908 | 0.809203 | 2.12E-50 | -1.69E-46 |
MS.gene049488 | MS.gene71908 | 0.800361 | 1.49E-48 | -1.69E-46 |
MS.gene049609 | MS.gene71908 | 0.881475 | 2.33E-70 | -1.69E-46 |
MS.gene049633 | MS.gene71908 | 0.849689 | 2.75E-60 | -1.69E-46 |
MS.gene049805 | MS.gene71908 | 0.882542 | 9.54E-71 | -1.69E-46 |
MS.gene050163 | MS.gene71908 | 0.811708 | 6.12E-51 | -1.69E-46 |
MS.gene050165 | MS.gene71908 | 0.801458 | 8.92E-49 | -1.69E-46 |
MS.gene050333 | MS.gene71908 | 0.809301 | 2.03E-50 | -1.69E-46 |
MS.gene050504 | MS.gene71908 | 0.80342 | 3.52E-49 | -1.69E-46 |
MS.gene050518 | MS.gene71908 | 0.815076 | 1.11E-51 | -1.69E-46 |
MS.gene050538 | MS.gene71908 | 0.831272 | 1.83E-55 | -1.69E-46 |
MS.gene050577 | MS.gene71908 | 0.833204 | 6.10E-56 | -1.69E-46 |
MS.gene050593 | MS.gene71908 | 0.858588 | 7.43E-63 | -1.69E-46 |
MS.gene050612 | MS.gene71908 | 0.823061 | 1.70E-53 | -1.69E-46 |
MS.gene050662 | MS.gene71908 | 0.810153 | 1.33E-50 | -1.69E-46 |
MS.gene050670 | MS.gene71908 | 0.813784 | 2.15E-51 | -1.69E-46 |
MS.gene050675 | MS.gene71908 | 0.822522 | 2.27E-53 | -1.69E-46 |
MS.gene050686 | MS.gene71908 | 0.801687 | 8.00E-49 | -1.69E-46 |
MS.gene050690 | MS.gene71908 | 0.809816 | 1.57E-50 | -1.69E-46 |
MS.gene050699 | MS.gene71908 | 0.836362 | 9.78E-57 | -1.69E-46 |
MS.gene050747 | MS.gene71908 | 0.86481 | 9.30E-65 | -1.69E-46 |
MS.gene050772 | MS.gene71908 | 0.887612 | 1.22E-72 | -1.69E-46 |
MS.gene05080 | MS.gene71908 | 0.860013 | 2.78E-63 | -1.69E-46 |
MS.gene05081 | MS.gene71908 | 0.811011 | 8.67E-51 | -1.69E-46 |
MS.gene050950 | MS.gene71908 | 0.847907 | 8.59E-60 | -1.69E-46 |
MS.gene05100 | MS.gene71908 | 0.812345 | 4.44E-51 | -1.69E-46 |
MS.gene05105 | MS.gene71908 | 0.846493 | 2.10E-59 | -1.69E-46 |
MS.gene051387 | MS.gene71908 | 0.826487 | 2.64E-54 | -1.69E-46 |
MS.gene051666 | MS.gene71908 | 0.867668 | 1.16E-65 | -1.69E-46 |
MS.gene051810 | MS.gene71908 | 0.804602 | 2.00E-49 | -1.69E-46 |
MS.gene051838 | MS.gene71908 | 0.829847 | 4.09E-55 | -1.69E-46 |
MS.gene051858 | MS.gene71908 | 0.819619 | 1.06E-52 | -1.69E-46 |
MS.gene052164 | MS.gene71908 | 0.830507 | 2.83E-55 | -1.69E-46 |
MS.gene052421 | MS.gene71908 | 0.823451 | 1.38E-53 | -1.69E-46 |
MS.gene052481 | MS.gene71908 | 0.817204 | 3.72E-52 | -1.69E-46 |
MS.gene052484 | MS.gene71908 | 0.833342 | 5.64E-56 | -1.69E-46 |
MS.gene052501 | MS.gene71908 | 0.83717 | 6.09E-57 | -1.69E-46 |
MS.gene052503 | MS.gene71908 | 0.848561 | 5.67E-60 | -1.69E-46 |
MS.gene052505 | MS.gene71908 | 0.835747 | 1.40E-56 | -1.69E-46 |
MS.gene052506 | MS.gene71908 | 0.844864 | 5.80E-59 | -1.69E-46 |
MS.gene052615 | MS.gene71908 | 0.864737 | 9.81E-65 | -1.69E-46 |
MS.gene052820 | MS.gene71908 | 0.802548 | 5.33E-49 | -1.69E-46 |
MS.gene052822 | MS.gene71908 | 0.845041 | 5.20E-59 | -1.69E-46 |
MS.gene052823 | MS.gene71908 | 0.839569 | 1.46E-57 | -1.69E-46 |
MS.gene052825 | MS.gene71908 | 0.83656 | 8.71E-57 | -1.69E-46 |
MS.gene052916 | MS.gene71908 | 0.811589 | 6.49E-51 | -1.69E-46 |
MS.gene053103 | MS.gene71908 | 0.83231 | 1.02E-55 | -1.69E-46 |
MS.gene053104 | MS.gene71908 | 0.85282 | 3.59E-61 | -1.69E-46 |
MS.gene053203 | MS.gene71908 | 0.816405 | 5.62E-52 | -1.69E-46 |
MS.gene053207 | MS.gene71908 | 0.845182 | 4.76E-59 | -1.69E-46 |
MS.gene053213 | MS.gene71908 | 0.849206 | 3.75E-60 | -1.69E-46 |
MS.gene053286 | MS.gene71908 | 0.837884 | 3.99E-57 | -1.69E-46 |
MS.gene053322 | MS.gene71908 | 0.810241 | 1.27E-50 | -1.69E-46 |
MS.gene053436 | MS.gene71908 | 0.8278 | 1.28E-54 | -1.69E-46 |
MS.gene053449 | MS.gene71908 | 0.80571 | 1.17E-49 | -1.69E-46 |
MS.gene053574 | MS.gene71908 | 0.871493 | 6.55E-67 | -1.69E-46 |
MS.gene053626 | MS.gene71908 | 0.827264 | 1.72E-54 | -1.69E-46 |
MS.gene053632 | MS.gene71908 | 0.882368 | 1.10E-70 | -1.69E-46 |
MS.gene053824 | MS.gene71908 | 0.809825 | 1.56E-50 | -1.69E-46 |
MS.gene053912 | MS.gene71908 | 0.834563 | 2.79E-56 | -1.69E-46 |
MS.gene053916 | MS.gene71908 | 0.859748 | 3.34E-63 | -1.69E-46 |
MS.gene054003 | MS.gene71908 | 0.80765 | 4.56E-50 | -1.69E-46 |
MS.gene054595 | MS.gene71908 | 0.823825 | 1.12E-53 | -1.69E-46 |
MS.gene054600 | MS.gene71908 | 0.836721 | 7.93E-57 | -1.69E-46 |
MS.gene054642 | MS.gene71908 | 0.863265 | 2.82E-64 | -1.69E-46 |
MS.gene054927 | MS.gene71908 | 0.830951 | 2.20E-55 | -1.69E-46 |
MS.gene054954 | MS.gene71908 | 0.812014 | 5.25E-51 | -1.69E-46 |
MS.gene05505 | MS.gene71908 | 0.84788 | 8.74E-60 | -1.69E-46 |
MS.gene055206 | MS.gene71908 | 0.856515 | 3.05E-62 | -1.69E-46 |
MS.gene055289 | MS.gene71908 | 0.849306 | 3.52E-60 | -1.69E-46 |
MS.gene055362 | MS.gene71908 | 0.831244 | 1.86E-55 | -1.69E-46 |
MS.gene055502 | MS.gene71908 | 0.855595 | 5.68E-62 | -1.69E-46 |
MS.gene055577 | MS.gene71908 | 0.830401 | 3.00E-55 | -1.69E-46 |
MS.gene055722 | MS.gene71908 | 0.85108 | 1.12E-60 | -1.69E-46 |
MS.gene055748 | MS.gene71908 | 0.805297 | 1.43E-49 | -1.69E-46 |
MS.gene055750 | MS.gene71908 | 0.813685 | 2.26E-51 | -1.69E-46 |
MS.gene05592 | MS.gene71908 | 0.825302 | 5.05E-54 | -1.69E-46 |
MS.gene055941 | MS.gene71908 | 0.835925 | 1.26E-56 | -1.69E-46 |
MS.gene056166 | MS.gene71908 | 0.817026 | 4.08E-52 | -1.69E-46 |
MS.gene056374 | MS.gene71908 | 0.823475 | 1.36E-53 | -1.69E-46 |
MS.gene056448 | MS.gene71908 | 0.802216 | 6.23E-49 | -1.69E-46 |
MS.gene056487 | MS.gene71908 | 0.811334 | 7.38E-51 | -1.69E-46 |
MS.gene056504 | MS.gene71908 | 0.802743 | 4.85E-49 | -1.69E-46 |
MS.gene056510 | MS.gene71908 | 0.816312 | 5.90E-52 | -1.69E-46 |
MS.gene056511 | MS.gene71908 | 0.856987 | 2.22E-62 | -1.69E-46 |
MS.gene05664 | MS.gene71908 | 0.808835 | 2.55E-50 | -1.69E-46 |
MS.gene056657 | MS.gene71908 | 0.846327 | 2.33E-59 | -1.69E-46 |
MS.gene056692 | MS.gene71908 | 0.81021 | 1.29E-50 | -1.69E-46 |
MS.gene057076 | MS.gene71908 | 0.879183 | 1.53E-69 | -1.69E-46 |
MS.gene057129 | MS.gene71908 | 0.818906 | 1.53E-52 | -1.69E-46 |
MS.gene057146 | MS.gene71908 | 0.826222 | 3.05E-54 | -1.69E-46 |
MS.gene057331 | MS.gene71908 | 0.826551 | 2.55E-54 | -1.69E-46 |
MS.gene057416 | MS.gene71908 | 0.874381 | 7.06E-68 | -1.69E-46 |
MS.gene057658 | MS.gene71908 | 0.826666 | 2.39E-54 | -1.69E-46 |
MS.gene057734 | MS.gene71908 | 0.848028 | 7.95E-60 | -1.69E-46 |
MS.gene057831 | MS.gene71908 | 0.832542 | 8.91E-56 | -1.69E-46 |
MS.gene057856 | MS.gene71908 | 0.815565 | 8.66E-52 | -1.69E-46 |
MS.gene058019 | MS.gene71908 | 0.846296 | 2.37E-59 | -1.69E-46 |
MS.gene058130 | MS.gene71908 | 0.81702 | 4.09E-52 | -1.69E-46 |
MS.gene058338 | MS.gene71908 | 0.825046 | 5.80E-54 | -1.69E-46 |
MS.gene05837 | MS.gene71908 | 0.806782 | 6.96E-50 | -1.69E-46 |
MS.gene058419 | MS.gene71908 | 0.879303 | 1.39E-69 | -1.69E-46 |
MS.gene058544 | MS.gene71908 | 0.852933 | 3.33E-61 | -1.69E-46 |
MS.gene058723 | MS.gene71908 | 0.827224 | 1.76E-54 | -1.69E-46 |
MS.gene058838 | MS.gene71908 | 0.863793 | 1.93E-64 | -1.69E-46 |
MS.gene05883 | MS.gene71908 | 0.80662 | 7.53E-50 | -1.69E-46 |
MS.gene059022 | MS.gene71908 | 0.805357 | 1.39E-49 | -1.69E-46 |
MS.gene059023 | MS.gene71908 | 0.828654 | 7.97E-55 | -1.69E-46 |
MS.gene059029 | MS.gene71908 | 0.81908 | 1.40E-52 | -1.69E-46 |
MS.gene05913 | MS.gene71908 | 0.818588 | 1.81E-52 | -1.69E-46 |
MS.gene05934 | MS.gene71908 | 0.830127 | 3.50E-55 | -1.69E-46 |
MS.gene059368 | MS.gene71908 | 0.802992 | 4.31E-49 | -1.69E-46 |
MS.gene059455 | MS.gene71908 | 0.84081 | 6.95E-58 | -1.69E-46 |
MS.gene059536 | MS.gene71908 | 0.82013 | 8.07E-53 | -1.69E-46 |
MS.gene059667 | MS.gene71908 | 0.830257 | 3.25E-55 | -1.69E-46 |
MS.gene059677 | MS.gene71908 | 0.833581 | 4.91E-56 | -1.69E-46 |
MS.gene059688 | MS.gene71908 | 0.807779 | 4.28E-50 | -1.69E-46 |
MS.gene059718 | MS.gene71908 | 0.856235 | 3.69E-62 | -1.69E-46 |
MS.gene059756 | MS.gene71908 | 0.80061 | 1.33E-48 | -1.69E-46 |
MS.gene059865 | MS.gene71908 | 0.811244 | 7.72E-51 | -1.69E-46 |
MS.gene059902 | MS.gene71908 | 0.818056 | 2.39E-52 | -1.69E-46 |
MS.gene059960 | MS.gene71908 | 0.806167 | 9.38E-50 | -1.69E-46 |
MS.gene060762 | MS.gene71908 | 0.82139 | 4.14E-53 | -1.69E-46 |
MS.gene060804 | MS.gene71908 | 0.845471 | 3.98E-59 | -1.69E-46 |
MS.gene060818 | MS.gene71908 | 0.830826 | 2.36E-55 | -1.69E-46 |
MS.gene060835 | MS.gene71908 | 0.857908 | 1.18E-62 | -1.69E-46 |
MS.gene060837 | MS.gene71908 | 0.808621 | 2.83E-50 | -1.69E-46 |
MS.gene06092 | MS.gene71908 | 0.844241 | 8.54E-59 | -1.69E-46 |
MS.gene060982 | MS.gene71908 | 0.813163 | 2.94E-51 | -1.69E-46 |
MS.gene061041 | MS.gene71908 | 0.839426 | 1.60E-57 | -1.69E-46 |
MS.gene061150 | MS.gene71908 | 0.817352 | 3.45E-52 | -1.69E-46 |
MS.gene061200 | MS.gene71908 | 0.801744 | 7.79E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71908.t1 | MTR_4g101750 | 74.763 | 317 | 79 | 1 | 2 | 317 | 456 | 772 | 1.02e-168 | 488 |
MS.gene71908.t1 | MTR_4g101750 | 73.835 | 279 | 71 | 2 | 2 | 278 | 456 | 734 | 8.95e-142 | 418 |
MS.gene71908.t1 | MTR_4g101740 | 73.063 | 271 | 37 | 2 | 1 | 271 | 1 | 235 | 1.04e-132 | 377 |
MS.gene71908.t1 | MTR_7g044770 | 36.250 | 320 | 199 | 4 | 3 | 319 | 250 | 567 | 1.41e-66 | 219 |
MS.gene71908.t1 | MTR_7g044770 | 36.250 | 320 | 199 | 4 | 3 | 319 | 427 | 744 | 1.93e-65 | 219 |
MS.gene71908.t1 | MTR_2g020660 | 34.579 | 321 | 185 | 6 | 3 | 319 | 421 | 720 | 8.21e-56 | 192 |
MS.gene71908.t1 | MTR_1g048000 | 26.593 | 361 | 207 | 13 | 2 | 308 | 450 | 806 | 2.07e-22 | 98.2 |
MS.gene71908.t1 | MTR_2g069050 | 26.316 | 361 | 208 | 11 | 2 | 308 | 450 | 806 | 3.27e-22 | 97.8 |
MS.gene71908.t1 | MTR_2g069310 | 26.316 | 361 | 208 | 11 | 2 | 308 | 450 | 806 | 3.56e-22 | 97.4 |
MS.gene71908.t1 | MTR_2g069320 | 27.389 | 314 | 174 | 8 | 44 | 307 | 496 | 805 | 2.81e-18 | 85.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71908.t1 | AT1G62750 | 72.240 | 317 | 87 | 1 | 2 | 317 | 460 | 776 | 2.40e-163 | 474 |
MS.gene71908.t1 | AT1G45332 | 38.125 | 320 | 193 | 4 | 3 | 319 | 250 | 567 | 1.73e-70 | 229 |
MS.gene71908.t1 | AT1G45332 | 38.125 | 320 | 193 | 4 | 3 | 319 | 430 | 747 | 5.13e-69 | 229 |
MS.gene71908.t1 | AT2G45030 | 38.125 | 320 | 193 | 4 | 3 | 319 | 430 | 747 | 6.37e-69 | 228 |
MS.gene71908.t1 | AT1G56070 | 26.316 | 361 | 208 | 11 | 2 | 308 | 450 | 806 | 6.01e-22 | 97.1 |
MS.gene71908.t1 | AT1G56070 | 26.316 | 361 | 208 | 11 | 2 | 308 | 450 | 806 | 6.01e-22 | 97.1 |
MS.gene71908.t1 | AT1G56070 | 26.316 | 361 | 208 | 11 | 2 | 308 | 450 | 806 | 6.01e-22 | 97.1 |
MS.gene71908.t1 | AT3G12915 | 26.984 | 315 | 175 | 9 | 44 | 308 | 442 | 751 | 1.28e-18 | 87.0 |
MS.gene71908.t1 | AT3G22980 | 35.345 | 116 | 72 | 3 | 2 | 114 | 502 | 617 | 7.90e-11 | 63.5 |
MS.gene71908.t1 | AT3G22980 | 35.345 | 116 | 72 | 3 | 2 | 114 | 502 | 617 | 7.90e-11 | 63.5 |
MS.gene71908.t1 | AT3G22980 | 35.345 | 116 | 72 | 3 | 2 | 114 | 502 | 617 | 7.90e-11 | 63.5 |
Find 84 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCGTCTCAAAAGAGAATTTA+AGG | 0.150654 | 8.3:+19576309 | MS.gene71908:CDS |
CTCCATGTCAGCTTTAGTTT+TGG | 0.200742 | 8.3:-19576164 | None:intergenic |
ACAATTTCAACTTTCATTAT+AGG | 0.216886 | 8.3:-19577107 | None:intergenic |
TGGTGTTCTAGCCGGCTTTC+CGG | 0.222511 | 8.3:+19576953 | MS.gene71908:CDS |
GTTACTCCTGAAGAACATTT+AGG | 0.259112 | 8.3:+19577128 | MS.gene71908:CDS |
ACATCTCCTAAATGTTCTTC+AGG | 0.320044 | 8.3:-19577134 | None:intergenic |
CTTCCAGAAGAATTCATTAC+TGG | 0.320246 | 8.3:+19576897 | MS.gene71908:CDS |
TCAATTGCAATCTTAATAAC+AGG | 0.329367 | 8.3:-19576139 | None:intergenic |
GAACATTTAGGAGATGTAAT+TGG | 0.332221 | 8.3:+19577140 | MS.gene71908:CDS |
TGCTTTCCCTATAGTTTACT+TGG | 0.338998 | 8.3:-19576734 | None:intergenic |
ATGGATATTGTTACTCTTGT+TGG | 0.342618 | 8.3:+19576037 | MS.gene71908:CDS |
ACCCCAGTAATGAATTCTTC+TGG | 0.342666 | 8.3:-19576900 | None:intergenic |
GCAATCTTAATAACAGGAAC+AGG | 0.342806 | 8.3:-19576133 | None:intergenic |
TGTCACAAAAGCTATTGATT+TGG | 0.354211 | 8.3:-19577184 | None:intergenic |
AAGCTTCTCTTGCTGCCAAC+TGG | 0.389694 | 8.3:-19577043 | None:intergenic |
TCATCCGGTCCTCTTTATCT+TGG | 0.393378 | 8.3:-19576243 | None:intergenic |
CATCCGGTCCTCTTTATCTT+GGG | 0.397382 | 8.3:-19576242 | None:intergenic |
TCAAATTTGTATCCACTACT+TGG | 0.404077 | 8.3:-19576852 | None:intergenic |
CTAGCCGGCTTTCCGGTTGT+TGG | 0.421178 | 8.3:+19576960 | MS.gene71908:CDS |
AGGTTCAAGCATTAACGGTT+TGG | 0.428422 | 8.3:-19577087 | None:intergenic |
GTATCCACTACTTGGGTCCA+TGG | 0.429904 | 8.3:-19576844 | None:intergenic |
GTCCATGGGTTCAAAATGTA+TGG | 0.430865 | 8.3:-19576829 | None:intergenic |
ATTATAGGTTCAAGCATTAA+CGG | 0.444891 | 8.3:-19577092 | None:intergenic |
ATCAAGCACGAATGGACCCT+TGG | 0.445699 | 8.3:-19576098 | None:intergenic |
TAAAGCTGACATGGAGAAGA+TGG | 0.456923 | 8.3:+19576171 | MS.gene71908:CDS |
TACTGAAACATCTCAGCAAT+AGG | 0.458689 | 8.3:-19577478 | None:intergenic |
TCTTGGGATAAGCGGAAAGA+AGG | 0.462771 | 8.3:-19576226 | None:intergenic |
TCAAGCACGAATGGACCCTT+GGG | 0.462799 | 8.3:-19576097 | None:intergenic |
ATGCCTCACTTCTGTGACTT+CGG | 0.464378 | 8.3:-19576760 | None:intergenic |
CCTACTCAATGCAGTTTGAC+AGG | 0.466205 | 8.3:+19577539 | MS.gene71908:CDS |
GCTTTCCCTATAGTTTACTT+GGG | 0.467404 | 8.3:-19576733 | None:intergenic |
CGGATGATCATTCAAGGAAC+GGG | 0.468533 | 8.3:+19576259 | MS.gene71908:CDS |
CCGCTTATCCCAAGATAAAG+AGG | 0.478110 | 8.3:+19576234 | MS.gene71908:CDS |
TCAGTATGTCGGTACACTTA+GGG | 0.480771 | 8.3:+19577495 | MS.gene71908:CDS |
TATCCACTACTTGGGTCCAT+GGG | 0.482451 | 8.3:-19576843 | None:intergenic |
CATGTGTTCAATAAACAATC+AGG | 0.482646 | 8.3:+19576780 | MS.gene71908:CDS |
TTCAGTATGTCGGTACACTT+AGG | 0.488588 | 8.3:+19577494 | MS.gene71908:CDS |
TCCATTCGTGCTTGATCAGA+TGG | 0.492171 | 8.3:+19576105 | MS.gene71908:CDS |
TGACTTACCTTGAGTCCACC+TGG | 0.492845 | 8.3:-19577209 | None:intergenic |
CCGTTCCTTGAATGATCATC+CGG | 0.511030 | 8.3:-19576258 | None:intergenic |
TACACCAACAACCGGAAAGC+CGG | 0.518143 | 8.3:-19576964 | None:intergenic |
TGAGACGTTGTGTGACCCCA+AGG | 0.519530 | 8.3:+19576081 | MS.gene71908:CDS |
GCAGTTTGACAGGTTTGATA+CGG | 0.520423 | 8.3:+19577549 | MS.gene71908:CDS |
GGAGATGTAATTGGTGATCT+CGG | 0.520638 | 8.3:+19577149 | MS.gene71908:CDS |
GAGGACCGGATGATCATTCA+AGG | 0.522038 | 8.3:+19576253 | MS.gene71908:CDS |
CAAATTTGTATCCACTACTT+GGG | 0.533919 | 8.3:-19576851 | None:intergenic |
ACTGCGCGTACACCAACAAC+CGG | 0.534986 | 8.3:-19576972 | None:intergenic |
ATGAGCAATGGTGTTCTAGC+CGG | 0.543808 | 8.3:+19576945 | MS.gene71908:CDS |
GCTGAGATGTTTCAGTATGT+CGG | 0.550369 | 8.3:+19577484 | MS.gene71908:CDS |
TTCCAGAAGAATTCATTACT+GGG | 0.551889 | 8.3:+19576898 | MS.gene71908:CDS |
TCCATCTGATCAAGCACGAA+TGG | 0.552084 | 8.3:-19576106 | None:intergenic |
GACATGGAGAAGATGGAAGC+TGG | 0.555973 | 8.3:+19576178 | MS.gene71908:CDS |
ATGCAGGTAGAAGCTAATGT+TGG | 0.557514 | 8.3:+19576705 | MS.gene71908:intron |
TGGTGTACGCGCAGTACTTG+TGG | 0.572358 | 8.3:+19576980 | MS.gene71908:CDS |
CTTTCCCTATAGTTTACTTG+GGG | 0.575513 | 8.3:-19576732 | None:intergenic |
GAACCCATGGACCCAAGTAG+TGG | 0.580505 | 8.3:+19576840 | MS.gene71908:CDS |
AAATGTGAGGGTATTCCAGT+TGG | 0.582925 | 8.3:+19577028 | MS.gene71908:CDS |
CCGGATGATCATTCAAGGAA+CGG | 0.584604 | 8.3:+19576258 | MS.gene71908:CDS |
CCTGTCAAACTGCATTGAGT+AGG | 0.586523 | 8.3:-19577539 | None:intergenic |
CCTCTTTATCTTGGGATAAG+CGG | 0.587821 | 8.3:-19576234 | None:intergenic |
GGTTTGAAAGATACTATAGC+CGG | 0.593470 | 8.3:+19576058 | MS.gene71908:CDS |
CTTGGGATAAGCGGAAAGAA+GGG | 0.595180 | 8.3:-19576225 | None:intergenic |
TGACAAACCAGGTGGACTCA+AGG | 0.596794 | 8.3:+19577202 | MS.gene71908:CDS |
ACACTTAGGGTGCTGACAGA+GGG | 0.607819 | 8.3:+19577508 | MS.gene71908:CDS |
TACACTTAGGGTGCTGACAG+AGG | 0.609312 | 8.3:+19577507 | MS.gene71908:CDS |
ACCCAAAACTAAAGCTGACA+TGG | 0.611458 | 8.3:+19576162 | MS.gene71908:CDS |
GGATGGTAATTACCATGATG+TGG | 0.612641 | 8.3:+19577001 | MS.gene71908:CDS |
GGGGTCACACAACGTCTCAC+CGG | 0.615808 | 8.3:-19576077 | None:intergenic |
TATCCCAAGATAAAGAGGAC+CGG | 0.617364 | 8.3:+19576239 | MS.gene71908:CDS |
GAGACGTTGTGTGACCCCAA+GGG | 0.619509 | 8.3:+19576082 | MS.gene71908:CDS |
TCACATTTGAATCCACATCA+TGG | 0.622810 | 8.3:-19577013 | None:intergenic |
GCACGTTTGTCAATAATCTG+AGG | 0.626574 | 8.3:-19577599 | None:intergenic |
TGGTTACATCTGCAAATTGA+CGG | 0.633657 | 8.3:-19576809 | None:intergenic |
TGGTTTAATCAAGCTTGCAG+AGG | 0.635811 | 8.3:+19576198 | MS.gene71908:CDS |
TCCAGAAGAATTCATTACTG+GGG | 0.636103 | 8.3:+19576899 | MS.gene71908:CDS |
CAATCTTAATAACAGGAACA+GGG | 0.636579 | 8.3:-19576132 | None:intergenic |
GTGTTCAATAAACAATCAGG+TGG | 0.650549 | 8.3:+19576783 | MS.gene71908:CDS |
TTTCCGAAGTCACAGAAGTG+AGG | 0.658776 | 8.3:+19576757 | MS.gene71908:CDS |
TTGGAAGAGTGCATGAGCAA+TGG | 0.663387 | 8.3:+19576933 | MS.gene71908:CDS |
TGATGTGGATTCAAATGTGA+GGG | 0.666011 | 8.3:+19577016 | MS.gene71908:CDS |
ACTGCATTGAGTAGGATGCA+CGG | 0.668859 | 8.3:-19577531 | None:intergenic |
GTACGCGCAGTACTTGTGGA+TGG | 0.703304 | 8.3:+19576984 | MS.gene71908:CDS |
ATGATGTGGATTCAAATGTG+AGG | 0.710458 | 8.3:+19577015 | MS.gene71908:CDS |
CAAGCACGAATGGACCCTTG+GGG | 0.723589 | 8.3:-19576096 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATCCATAATAATTTGAAAAA+TGG | - | chr8.3:19577363-19577382 | None:intergenic | 15.0% |
!!! | TTCCATTTTTCAAATTATTA+TGG | + | chr8.3:19577358-19577377 | MS.gene71908:intron | 15.0% |
!! | AAGGAAGTAATCATATAATA+GGG | - | chr8.3:19576578-19576597 | None:intergenic | 20.0% |
!! | ACAATTTCAACTTTCATTAT+AGG | - | chr8.3:19577110-19577129 | None:intergenic | 20.0% |
!! | ATATATATTAATGACGTATC+TGG | + | chr8.3:19577304-19577323 | MS.gene71908:intron | 20.0% |
!! | TCAAATTTAATAAATGCACA+TGG | - | chr8.3:19577249-19577268 | None:intergenic | 20.0% |
!! | TGTGCATTTATTAAATTTGA+AGG | + | chr8.3:19577249-19577268 | MS.gene71908:intron | 20.0% |
! | AACAAATAATCATCCTTGAT+CGG | - | chr8.3:19576535-19576554 | None:intergenic | 25.0% |
! | AGGAAGTAATCATATAATAG+GGG | - | chr8.3:19576577-19576596 | None:intergenic | 25.0% |
! | ATTATAGGTTCAAGCATTAA+CGG | - | chr8.3:19577095-19577114 | None:intergenic | 25.0% |
! | CAAGGAAGTAATCATATAAT+AGG | - | chr8.3:19576579-19576598 | None:intergenic | 25.0% |
! | TACATAAAACTGATGAAGAT+CGG | - | chr8.3:19576621-19576640 | None:intergenic | 25.0% |
! | TCAATTGCAATCTTAATAAC+AGG | - | chr8.3:19576142-19576161 | None:intergenic | 25.0% |
! | TGAAATGTAACTACAAGTAT+TGG | - | chr8.3:19577333-19577352 | None:intergenic | 25.0% |
!! | ATTTTCTGTATCTGTTAACA+TGG | + | chr8.3:19576358-19576377 | MS.gene71908:intron | 25.0% |
!! | GAATATTGTTTTCTTCCTTT+TGG | + | chr8.3:19577422-19577441 | MS.gene71908:intron | 25.0% |
!! | TATCTAATGTTTGTTAATGC+AGG | + | chr8.3:19576689-19576708 | MS.gene71908:intron | 25.0% |
AAGAAAAAGGAATCATCTCA+AGG | - | chr8.3:19576597-19576616 | None:intergenic | 30.0% | |
ACAGACATGGATTTATTCAA+GGG | - | chr8.3:19576509-19576528 | None:intergenic | 30.0% | |
ATGGATATTGTTACTCTTGT+TGG | + | chr8.3:19576037-19576056 | MS.gene71908:CDS | 30.0% | |
CAAATTTGTATCCACTACTT+GGG | - | chr8.3:19576854-19576873 | None:intergenic | 30.0% | |
CAATCTTAATAACAGGAACA+GGG | - | chr8.3:19576135-19576154 | None:intergenic | 30.0% | |
CATGTGTTCAATAAACAATC+AGG | + | chr8.3:19576780-19576799 | MS.gene71908:CDS | 30.0% | |
CCAAATCATAACAAGAAGTA+AGG | + | chr8.3:19576429-19576448 | MS.gene71908:intron | 30.0% | |
GAACATTTAGGAGATGTAAT+TGG | + | chr8.3:19577140-19577159 | MS.gene71908:CDS | 30.0% | |
TCAAATTTGTATCCACTACT+TGG | - | chr8.3:19576855-19576874 | None:intergenic | 30.0% | |
TCATGAAAAAAATGCTTACG+AGG | + | chr8.3:19576472-19576491 | MS.gene71908:intron | 30.0% | |
TCGTCTCAAAAGAGAATTTA+AGG | + | chr8.3:19576309-19576328 | MS.gene71908:CDS | 30.0% | |
TTCCAGAAGAATTCATTACT+GGG | + | chr8.3:19576898-19576917 | MS.gene71908:CDS | 30.0% | |
! | CCTTACTTCTTGTTATGATT+TGG | - | chr8.3:19576432-19576451 | None:intergenic | 30.0% |
! | TATTGTTTTCTTCCTTTTGG+TGG | + | chr8.3:19577425-19577444 | MS.gene71908:intron | 30.0% |
! | TGTCACAAAAGCTATTGATT+TGG | - | chr8.3:19577187-19577206 | None:intergenic | 30.0% |
! | TTCATTACTGGGGTTTTTAA+AGG | + | chr8.3:19576909-19576928 | MS.gene71908:CDS | 30.0% |
! | TTTTCCCCAAGTAAACTATA+GGG | + | chr8.3:19576728-19576747 | MS.gene71908:CDS | 30.0% |
ACATCTCCTAAATGTTCTTC+AGG | - | chr8.3:19577137-19577156 | None:intergenic | 35.0% | |
ATGATGTGGATTCAAATGTG+AGG | + | chr8.3:19577015-19577034 | MS.gene71908:CDS | 35.0% | |
CTTCCAGAAGAATTCATTAC+TGG | + | chr8.3:19576897-19576916 | MS.gene71908:CDS | 35.0% | |
CTTTCCCTATAGTTTACTTG+GGG | - | chr8.3:19576735-19576754 | None:intergenic | 35.0% | |
GACAGACATGGATTTATTCA+AGG | - | chr8.3:19576510-19576529 | None:intergenic | 35.0% | |
GATGAAGATCGGAAAGAAAA+AGG | - | chr8.3:19576610-19576629 | None:intergenic | 35.0% | |
GCAATCTTAATAACAGGAAC+AGG | - | chr8.3:19576136-19576155 | None:intergenic | 35.0% | |
GCTTTCCCTATAGTTTACTT+GGG | - | chr8.3:19576736-19576755 | None:intergenic | 35.0% | |
GGTTTGAAAGATACTATAGC+CGG | + | chr8.3:19576058-19576077 | MS.gene71908:CDS | 35.0% | |
GTGTTCAATAAACAATCAGG+TGG | + | chr8.3:19576783-19576802 | MS.gene71908:CDS | 35.0% | |
GTTACTCCTGAAGAACATTT+AGG | + | chr8.3:19577128-19577147 | MS.gene71908:CDS | 35.0% | |
TACTGAAACATCTCAGCAAT+AGG | - | chr8.3:19577481-19577500 | None:intergenic | 35.0% | |
TCACATTTGAATCCACATCA+TGG | - | chr8.3:19577016-19577035 | None:intergenic | 35.0% | |
TCCAGAAGAATTCATTACTG+GGG | + | chr8.3:19576899-19576918 | MS.gene71908:CDS | 35.0% | |
TGATGTGGATTCAAATGTGA+GGG | + | chr8.3:19577016-19577035 | MS.gene71908:CDS | 35.0% | |
TGCTTTCCCTATAGTTTACT+TGG | - | chr8.3:19576737-19576756 | None:intergenic | 35.0% | |
TGGTTACATCTGCAAATTGA+CGG | - | chr8.3:19576812-19576831 | None:intergenic | 35.0% | |
! | AACCATACATTTTGAACCCA+TGG | + | chr8.3:19576827-19576846 | MS.gene71908:CDS | 35.0% |
! | AATAGCTTTTGTGACAAACC+AGG | + | chr8.3:19577191-19577210 | MS.gene71908:CDS | 35.0% |
! | GTTTTCCCCAAGTAAACTAT+AGG | + | chr8.3:19576727-19576746 | MS.gene71908:CDS | 35.0% |
!! | TACTGGGGTTTTTAAAGGAT+TGG | + | chr8.3:19576914-19576933 | MS.gene71908:CDS | 35.0% |
!!! | TCCATGTCAGCTTTAGTTTT+GGG | - | chr8.3:19576166-19576185 | None:intergenic | 35.0% |
!!! | TCTTTTGAGACGATCAACAA+TGG | - | chr8.3:19576302-19576321 | None:intergenic | 35.0% |
ACCCAAAACTAAAGCTGACA+TGG | + | chr8.3:19576162-19576181 | MS.gene71908:CDS | 40.0% | |
ACCCCAGTAATGAATTCTTC+TGG | - | chr8.3:19576903-19576922 | None:intergenic | 40.0% | |
AGGTTCAAGCATTAACGGTT+TGG | - | chr8.3:19577090-19577109 | None:intergenic | 40.0% | |
ATGCAGGTAGAAGCTAATGT+TGG | + | chr8.3:19576705-19576724 | MS.gene71908:intron | 40.0% | |
CCTCTTTATCTTGGGATAAG+CGG | - | chr8.3:19576237-19576256 | None:intergenic | 40.0% | |
GCAGTTTGACAGGTTTGATA+CGG | + | chr8.3:19577549-19577568 | MS.gene71908:CDS | 40.0% | |
GCTGAGATGTTTCAGTATGT+CGG | + | chr8.3:19577484-19577503 | MS.gene71908:CDS | 40.0% | |
GGATGGTAATTACCATGATG+TGG | + | chr8.3:19577001-19577020 | MS.gene71908:CDS | 40.0% | |
GTCCATGGGTTCAAAATGTA+TGG | - | chr8.3:19576832-19576851 | None:intergenic | 40.0% | |
TAAAGCTGACATGGAGAAGA+TGG | + | chr8.3:19576171-19576190 | MS.gene71908:CDS | 40.0% | |
TATCCCAAGATAAAGAGGAC+CGG | + | chr8.3:19576239-19576258 | MS.gene71908:CDS | 40.0% | |
TCAGTATGTCGGTACACTTA+GGG | + | chr8.3:19577495-19577514 | MS.gene71908:CDS | 40.0% | |
TGGTTTAATCAAGCTTGCAG+AGG | + | chr8.3:19576198-19576217 | MS.gene71908:CDS | 40.0% | |
TTCAGTATGTCGGTACACTT+AGG | + | chr8.3:19577494-19577513 | MS.gene71908:CDS | 40.0% | |
! | CTGTTTTCACAACCACCAAA+AGG | - | chr8.3:19577440-19577459 | None:intergenic | 40.0% |
! | GGAGATGTAATTGGTGATCT+CGG | + | chr8.3:19577149-19577168 | MS.gene71908:CDS | 40.0% |
!! | AAATGTGAGGGTATTCCAGT+TGG | + | chr8.3:19577028-19577047 | MS.gene71908:CDS | 40.0% |
!! | CTCCATGTCAGCTTTAGTTT+TGG | - | chr8.3:19576167-19576186 | None:intergenic | 40.0% |
!! | CTTTTGGTGGTTGTGAAAAC+AGG | + | chr8.3:19577438-19577457 | MS.gene71908:intron | 40.0% |
ACTGCATTGAGTAGGATGCA+CGG | - | chr8.3:19577534-19577553 | None:intergenic | 45.0% | |
ATGAGCAATGGTGTTCTAGC+CGG | + | chr8.3:19576945-19576964 | MS.gene71908:CDS | 45.0% | |
ATGCCTCACTTCTGTGACTT+CGG | - | chr8.3:19576763-19576782 | None:intergenic | 45.0% | |
CATCCGGTCCTCTTTATCTT+GGG | - | chr8.3:19576245-19576264 | None:intergenic | 45.0% | |
CCGCTTATCCCAAGATAAAG+AGG | + | chr8.3:19576234-19576253 | MS.gene71908:CDS | 45.0% | |
CCGGATGATCATTCAAGGAA+CGG | + | chr8.3:19576258-19576277 | MS.gene71908:CDS | 45.0% | |
CCGTTCCTTGAATGATCATC+CGG | - | chr8.3:19576261-19576280 | None:intergenic | 45.0% | |
CCTACTCAATGCAGTTTGAC+AGG | + | chr8.3:19577539-19577558 | MS.gene71908:CDS | 45.0% | |
CCTGTCAAACTGCATTGAGT+AGG | - | chr8.3:19577542-19577561 | None:intergenic | 45.0% | |
CGGATGATCATTCAAGGAAC+GGG | + | chr8.3:19576259-19576278 | MS.gene71908:CDS | 45.0% | |
CTTGGGATAAGCGGAAAGAA+GGG | - | chr8.3:19576228-19576247 | None:intergenic | 45.0% | |
TATCCACTACTTGGGTCCAT+GGG | - | chr8.3:19576846-19576865 | None:intergenic | 45.0% | |
TCATCCGGTCCTCTTTATCT+TGG | - | chr8.3:19576246-19576265 | None:intergenic | 45.0% | |
TCCATCTGATCAAGCACGAA+TGG | - | chr8.3:19576109-19576128 | None:intergenic | 45.0% | |
TCCATTCGTGCTTGATCAGA+TGG | + | chr8.3:19576105-19576124 | MS.gene71908:CDS | 45.0% | |
TCTTGGGATAAGCGGAAAGA+AGG | - | chr8.3:19576229-19576248 | None:intergenic | 45.0% | |
TTTCCGAAGTCACAGAAGTG+AGG | + | chr8.3:19576757-19576776 | MS.gene71908:CDS | 45.0% | |
! | AGCTTTTGTGACAAACCAGG+TGG | + | chr8.3:19577194-19577213 | MS.gene71908:CDS | 45.0% |
! | GGCAGCAAGAGAAGCTTTTA+GGG | + | chr8.3:19577049-19577068 | MS.gene71908:CDS | 45.0% |
! | TGGCAGCAAGAGAAGCTTTT+AGG | + | chr8.3:19577048-19577067 | MS.gene71908:CDS | 45.0% |
! | TTGGAAGAGTGCATGAGCAA+TGG | + | chr8.3:19576933-19576952 | MS.gene71908:CDS | 45.0% |
! | TTGGTGGTTGTGAAAACAGG+TGG | + | chr8.3:19577441-19577460 | MS.gene71908:intron | 45.0% |
!! | GCAAGAGAAGCTTTTAGGGA+AGG | + | chr8.3:19577053-19577072 | MS.gene71908:CDS | 45.0% |
AAGCTTCTCTTGCTGCCAAC+TGG | - | chr8.3:19577046-19577065 | None:intergenic | 50.0% | |
ATCAAGCACGAATGGACCCT+TGG | - | chr8.3:19576101-19576120 | None:intergenic | 50.0% | |
CCATGTCTGTCATCCGATCA+AGG | + | chr8.3:19576519-19576538 | MS.gene71908:intron | 50.0% | |
CCTTGATCGGATGACAGACA+TGG | - | chr8.3:19576522-19576541 | None:intergenic | 50.0% | |
GACATGGAGAAGATGGAAGC+TGG | + | chr8.3:19576178-19576197 | MS.gene71908:CDS | 50.0% | |
GAGGACCGGATGATCATTCA+AGG | + | chr8.3:19576253-19576272 | MS.gene71908:CDS | 50.0% | |
GGTGATCTCGGCAGAAAAAG+AGG | + | chr8.3:19577161-19577180 | MS.gene71908:CDS | 50.0% | |
GTATCCACTACTTGGGTCCA+TGG | - | chr8.3:19576847-19576866 | None:intergenic | 50.0% | |
TACACCAACAACCGGAAAGC+CGG | - | chr8.3:19576967-19576986 | None:intergenic | 50.0% | |
TCAAGCACGAATGGACCCTT+GGG | - | chr8.3:19576100-19576119 | None:intergenic | 50.0% | |
TGACTTACCTTGAGTCCACC+TGG | - | chr8.3:19577212-19577231 | None:intergenic | 50.0% | |
! | TGACAAACCAGGTGGACTCA+AGG | + | chr8.3:19577202-19577221 | MS.gene71908:CDS | 50.0% |
!! | ACACTTAGGGTGCTGACAGA+GGG | + | chr8.3:19577508-19577527 | MS.gene71908:CDS | 50.0% |
!! | TACACTTAGGGTGCTGACAG+AGG | + | chr8.3:19577507-19577526 | MS.gene71908:CDS | 50.0% |
ACTGCGCGTACACCAACAAC+CGG | - | chr8.3:19576975-19576994 | None:intergenic | 55.0% | |
CAAGCACGAATGGACCCTTG+GGG | - | chr8.3:19576099-19576118 | None:intergenic | 55.0% | |
GAACCCATGGACCCAAGTAG+TGG | + | chr8.3:19576840-19576859 | MS.gene71908:CDS | 55.0% | |
GAGACGTTGTGTGACCCCAA+GGG | + | chr8.3:19576082-19576101 | MS.gene71908:CDS | 55.0% | |
GTACGCGCAGTACTTGTGGA+TGG | + | chr8.3:19576984-19577003 | MS.gene71908:CDS | 55.0% | |
TGAGACGTTGTGTGACCCCA+AGG | + | chr8.3:19576081-19576100 | MS.gene71908:CDS | 55.0% | |
TGGTGTACGCGCAGTACTTG+TGG | + | chr8.3:19576980-19576999 | MS.gene71908:CDS | 55.0% | |
! | TGGTGTTCTAGCCGGCTTTC+CGG | + | chr8.3:19576953-19576972 | MS.gene71908:CDS | 55.0% |
GGGGTCACACAACGTCTCAC+CGG | - | chr8.3:19576080-19576099 | None:intergenic | 60.0% | |
! | CTAGCCGGCTTTCCGGTTGT+TGG | + | chr8.3:19576960-19576979 | MS.gene71908:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 19576037 | 19577612 | 19576037 | ID=MS.gene71908 |
chr8.3 | mRNA | 19576037 | 19577612 | 19576037 | ID=MS.gene71908.t1;Parent=MS.gene71908 |
chr8.3 | exon | 19576037 | 19576330 | 19576037 | ID=MS.gene71908.t1.exon1;Parent=MS.gene71908.t1 |
chr8.3 | CDS | 19576037 | 19576330 | 19576037 | ID=cds.MS.gene71908.t1;Parent=MS.gene71908.t1 |
chr8.3 | exon | 19576711 | 19577223 | 19576711 | ID=MS.gene71908.t1.exon2;Parent=MS.gene71908.t1 |
chr8.3 | CDS | 19576711 | 19577223 | 19576711 | ID=cds.MS.gene71908.t1;Parent=MS.gene71908.t1 |
chr8.3 | exon | 19577460 | 19577612 | 19577460 | ID=MS.gene71908.t1.exon3;Parent=MS.gene71908.t1 |
chr8.3 | CDS | 19577460 | 19577612 | 19577460 | ID=cds.MS.gene71908.t1;Parent=MS.gene71908.t1 |
Gene Sequence |
Protein sequence |