AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene71908


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71908.t1 MTR_4g101750 74.763 317 79 1 2 317 456 772 1.02e-168 488
MS.gene71908.t1 MTR_4g101750 73.835 279 71 2 2 278 456 734 8.95e-142 418
MS.gene71908.t1 MTR_4g101740 73.063 271 37 2 1 271 1 235 1.04e-132 377
MS.gene71908.t1 MTR_7g044770 36.250 320 199 4 3 319 250 567 1.41e-66 219
MS.gene71908.t1 MTR_7g044770 36.250 320 199 4 3 319 427 744 1.93e-65 219
MS.gene71908.t1 MTR_2g020660 34.579 321 185 6 3 319 421 720 8.21e-56 192
MS.gene71908.t1 MTR_1g048000 26.593 361 207 13 2 308 450 806 2.07e-22 98.2
MS.gene71908.t1 MTR_2g069050 26.316 361 208 11 2 308 450 806 3.27e-22 97.8
MS.gene71908.t1 MTR_2g069310 26.316 361 208 11 2 308 450 806 3.56e-22 97.4
MS.gene71908.t1 MTR_2g069320 27.389 314 174 8 44 307 496 805 2.81e-18 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71908.t1 AT1G62750 72.240 317 87 1 2 317 460 776 2.40e-163 474
MS.gene71908.t1 AT1G45332 38.125 320 193 4 3 319 250 567 1.73e-70 229
MS.gene71908.t1 AT1G45332 38.125 320 193 4 3 319 430 747 5.13e-69 229
MS.gene71908.t1 AT2G45030 38.125 320 193 4 3 319 430 747 6.37e-69 228
MS.gene71908.t1 AT1G56070 26.316 361 208 11 2 308 450 806 6.01e-22 97.1
MS.gene71908.t1 AT1G56070 26.316 361 208 11 2 308 450 806 6.01e-22 97.1
MS.gene71908.t1 AT1G56070 26.316 361 208 11 2 308 450 806 6.01e-22 97.1
MS.gene71908.t1 AT3G12915 26.984 315 175 9 44 308 442 751 1.28e-18 87.0
MS.gene71908.t1 AT3G22980 35.345 116 72 3 2 114 502 617 7.90e-11 63.5
MS.gene71908.t1 AT3G22980 35.345 116 72 3 2 114 502 617 7.90e-11 63.5
MS.gene71908.t1 AT3G22980 35.345 116 72 3 2 114 502 617 7.90e-11 63.5

Find 84 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTCTCAAAAGAGAATTTA+AGG 0.150654 8.3:+19576309 MS.gene71908:CDS
CTCCATGTCAGCTTTAGTTT+TGG 0.200742 8.3:-19576164 None:intergenic
ACAATTTCAACTTTCATTAT+AGG 0.216886 8.3:-19577107 None:intergenic
TGGTGTTCTAGCCGGCTTTC+CGG 0.222511 8.3:+19576953 MS.gene71908:CDS
GTTACTCCTGAAGAACATTT+AGG 0.259112 8.3:+19577128 MS.gene71908:CDS
ACATCTCCTAAATGTTCTTC+AGG 0.320044 8.3:-19577134 None:intergenic
CTTCCAGAAGAATTCATTAC+TGG 0.320246 8.3:+19576897 MS.gene71908:CDS
TCAATTGCAATCTTAATAAC+AGG 0.329367 8.3:-19576139 None:intergenic
GAACATTTAGGAGATGTAAT+TGG 0.332221 8.3:+19577140 MS.gene71908:CDS
TGCTTTCCCTATAGTTTACT+TGG 0.338998 8.3:-19576734 None:intergenic
ATGGATATTGTTACTCTTGT+TGG 0.342618 8.3:+19576037 MS.gene71908:CDS
ACCCCAGTAATGAATTCTTC+TGG 0.342666 8.3:-19576900 None:intergenic
GCAATCTTAATAACAGGAAC+AGG 0.342806 8.3:-19576133 None:intergenic
TGTCACAAAAGCTATTGATT+TGG 0.354211 8.3:-19577184 None:intergenic
AAGCTTCTCTTGCTGCCAAC+TGG 0.389694 8.3:-19577043 None:intergenic
TCATCCGGTCCTCTTTATCT+TGG 0.393378 8.3:-19576243 None:intergenic
CATCCGGTCCTCTTTATCTT+GGG 0.397382 8.3:-19576242 None:intergenic
TCAAATTTGTATCCACTACT+TGG 0.404077 8.3:-19576852 None:intergenic
CTAGCCGGCTTTCCGGTTGT+TGG 0.421178 8.3:+19576960 MS.gene71908:CDS
AGGTTCAAGCATTAACGGTT+TGG 0.428422 8.3:-19577087 None:intergenic
GTATCCACTACTTGGGTCCA+TGG 0.429904 8.3:-19576844 None:intergenic
GTCCATGGGTTCAAAATGTA+TGG 0.430865 8.3:-19576829 None:intergenic
ATTATAGGTTCAAGCATTAA+CGG 0.444891 8.3:-19577092 None:intergenic
ATCAAGCACGAATGGACCCT+TGG 0.445699 8.3:-19576098 None:intergenic
TAAAGCTGACATGGAGAAGA+TGG 0.456923 8.3:+19576171 MS.gene71908:CDS
TACTGAAACATCTCAGCAAT+AGG 0.458689 8.3:-19577478 None:intergenic
TCTTGGGATAAGCGGAAAGA+AGG 0.462771 8.3:-19576226 None:intergenic
TCAAGCACGAATGGACCCTT+GGG 0.462799 8.3:-19576097 None:intergenic
ATGCCTCACTTCTGTGACTT+CGG 0.464378 8.3:-19576760 None:intergenic
CCTACTCAATGCAGTTTGAC+AGG 0.466205 8.3:+19577539 MS.gene71908:CDS
GCTTTCCCTATAGTTTACTT+GGG 0.467404 8.3:-19576733 None:intergenic
CGGATGATCATTCAAGGAAC+GGG 0.468533 8.3:+19576259 MS.gene71908:CDS
CCGCTTATCCCAAGATAAAG+AGG 0.478110 8.3:+19576234 MS.gene71908:CDS
TCAGTATGTCGGTACACTTA+GGG 0.480771 8.3:+19577495 MS.gene71908:CDS
TATCCACTACTTGGGTCCAT+GGG 0.482451 8.3:-19576843 None:intergenic
CATGTGTTCAATAAACAATC+AGG 0.482646 8.3:+19576780 MS.gene71908:CDS
TTCAGTATGTCGGTACACTT+AGG 0.488588 8.3:+19577494 MS.gene71908:CDS
TCCATTCGTGCTTGATCAGA+TGG 0.492171 8.3:+19576105 MS.gene71908:CDS
TGACTTACCTTGAGTCCACC+TGG 0.492845 8.3:-19577209 None:intergenic
CCGTTCCTTGAATGATCATC+CGG 0.511030 8.3:-19576258 None:intergenic
TACACCAACAACCGGAAAGC+CGG 0.518143 8.3:-19576964 None:intergenic
TGAGACGTTGTGTGACCCCA+AGG 0.519530 8.3:+19576081 MS.gene71908:CDS
GCAGTTTGACAGGTTTGATA+CGG 0.520423 8.3:+19577549 MS.gene71908:CDS
GGAGATGTAATTGGTGATCT+CGG 0.520638 8.3:+19577149 MS.gene71908:CDS
GAGGACCGGATGATCATTCA+AGG 0.522038 8.3:+19576253 MS.gene71908:CDS
CAAATTTGTATCCACTACTT+GGG 0.533919 8.3:-19576851 None:intergenic
ACTGCGCGTACACCAACAAC+CGG 0.534986 8.3:-19576972 None:intergenic
ATGAGCAATGGTGTTCTAGC+CGG 0.543808 8.3:+19576945 MS.gene71908:CDS
GCTGAGATGTTTCAGTATGT+CGG 0.550369 8.3:+19577484 MS.gene71908:CDS
TTCCAGAAGAATTCATTACT+GGG 0.551889 8.3:+19576898 MS.gene71908:CDS
TCCATCTGATCAAGCACGAA+TGG 0.552084 8.3:-19576106 None:intergenic
GACATGGAGAAGATGGAAGC+TGG 0.555973 8.3:+19576178 MS.gene71908:CDS
ATGCAGGTAGAAGCTAATGT+TGG 0.557514 8.3:+19576705 MS.gene71908:intron
TGGTGTACGCGCAGTACTTG+TGG 0.572358 8.3:+19576980 MS.gene71908:CDS
CTTTCCCTATAGTTTACTTG+GGG 0.575513 8.3:-19576732 None:intergenic
GAACCCATGGACCCAAGTAG+TGG 0.580505 8.3:+19576840 MS.gene71908:CDS
AAATGTGAGGGTATTCCAGT+TGG 0.582925 8.3:+19577028 MS.gene71908:CDS
CCGGATGATCATTCAAGGAA+CGG 0.584604 8.3:+19576258 MS.gene71908:CDS
CCTGTCAAACTGCATTGAGT+AGG 0.586523 8.3:-19577539 None:intergenic
CCTCTTTATCTTGGGATAAG+CGG 0.587821 8.3:-19576234 None:intergenic
GGTTTGAAAGATACTATAGC+CGG 0.593470 8.3:+19576058 MS.gene71908:CDS
CTTGGGATAAGCGGAAAGAA+GGG 0.595180 8.3:-19576225 None:intergenic
TGACAAACCAGGTGGACTCA+AGG 0.596794 8.3:+19577202 MS.gene71908:CDS
ACACTTAGGGTGCTGACAGA+GGG 0.607819 8.3:+19577508 MS.gene71908:CDS
TACACTTAGGGTGCTGACAG+AGG 0.609312 8.3:+19577507 MS.gene71908:CDS
ACCCAAAACTAAAGCTGACA+TGG 0.611458 8.3:+19576162 MS.gene71908:CDS
GGATGGTAATTACCATGATG+TGG 0.612641 8.3:+19577001 MS.gene71908:CDS
GGGGTCACACAACGTCTCAC+CGG 0.615808 8.3:-19576077 None:intergenic
TATCCCAAGATAAAGAGGAC+CGG 0.617364 8.3:+19576239 MS.gene71908:CDS
GAGACGTTGTGTGACCCCAA+GGG 0.619509 8.3:+19576082 MS.gene71908:CDS
TCACATTTGAATCCACATCA+TGG 0.622810 8.3:-19577013 None:intergenic
GCACGTTTGTCAATAATCTG+AGG 0.626574 8.3:-19577599 None:intergenic
TGGTTACATCTGCAAATTGA+CGG 0.633657 8.3:-19576809 None:intergenic
TGGTTTAATCAAGCTTGCAG+AGG 0.635811 8.3:+19576198 MS.gene71908:CDS
TCCAGAAGAATTCATTACTG+GGG 0.636103 8.3:+19576899 MS.gene71908:CDS
CAATCTTAATAACAGGAACA+GGG 0.636579 8.3:-19576132 None:intergenic
GTGTTCAATAAACAATCAGG+TGG 0.650549 8.3:+19576783 MS.gene71908:CDS
TTTCCGAAGTCACAGAAGTG+AGG 0.658776 8.3:+19576757 MS.gene71908:CDS
TTGGAAGAGTGCATGAGCAA+TGG 0.663387 8.3:+19576933 MS.gene71908:CDS
TGATGTGGATTCAAATGTGA+GGG 0.666011 8.3:+19577016 MS.gene71908:CDS
ACTGCATTGAGTAGGATGCA+CGG 0.668859 8.3:-19577531 None:intergenic
GTACGCGCAGTACTTGTGGA+TGG 0.703304 8.3:+19576984 MS.gene71908:CDS
ATGATGTGGATTCAAATGTG+AGG 0.710458 8.3:+19577015 MS.gene71908:CDS
CAAGCACGAATGGACCCTTG+GGG 0.723589 8.3:-19576096 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCCATAATAATTTGAAAAA+TGG - chr8.3:19577363-19577382 None:intergenic 15.0%
!!! TTCCATTTTTCAAATTATTA+TGG + chr8.3:19577358-19577377 MS.gene71908:intron 15.0%
!! AAGGAAGTAATCATATAATA+GGG - chr8.3:19576578-19576597 None:intergenic 20.0%
!! ACAATTTCAACTTTCATTAT+AGG - chr8.3:19577110-19577129 None:intergenic 20.0%
!! ATATATATTAATGACGTATC+TGG + chr8.3:19577304-19577323 MS.gene71908:intron 20.0%
!! TCAAATTTAATAAATGCACA+TGG - chr8.3:19577249-19577268 None:intergenic 20.0%
!! TGTGCATTTATTAAATTTGA+AGG + chr8.3:19577249-19577268 MS.gene71908:intron 20.0%
! AACAAATAATCATCCTTGAT+CGG - chr8.3:19576535-19576554 None:intergenic 25.0%
! AGGAAGTAATCATATAATAG+GGG - chr8.3:19576577-19576596 None:intergenic 25.0%
! ATTATAGGTTCAAGCATTAA+CGG - chr8.3:19577095-19577114 None:intergenic 25.0%
! CAAGGAAGTAATCATATAAT+AGG - chr8.3:19576579-19576598 None:intergenic 25.0%
! TACATAAAACTGATGAAGAT+CGG - chr8.3:19576621-19576640 None:intergenic 25.0%
! TCAATTGCAATCTTAATAAC+AGG - chr8.3:19576142-19576161 None:intergenic 25.0%
! TGAAATGTAACTACAAGTAT+TGG - chr8.3:19577333-19577352 None:intergenic 25.0%
!! ATTTTCTGTATCTGTTAACA+TGG + chr8.3:19576358-19576377 MS.gene71908:intron 25.0%
!! GAATATTGTTTTCTTCCTTT+TGG + chr8.3:19577422-19577441 MS.gene71908:intron 25.0%
!! TATCTAATGTTTGTTAATGC+AGG + chr8.3:19576689-19576708 MS.gene71908:intron 25.0%
AAGAAAAAGGAATCATCTCA+AGG - chr8.3:19576597-19576616 None:intergenic 30.0%
ACAGACATGGATTTATTCAA+GGG - chr8.3:19576509-19576528 None:intergenic 30.0%
ATGGATATTGTTACTCTTGT+TGG + chr8.3:19576037-19576056 MS.gene71908:CDS 30.0%
CAAATTTGTATCCACTACTT+GGG - chr8.3:19576854-19576873 None:intergenic 30.0%
CAATCTTAATAACAGGAACA+GGG - chr8.3:19576135-19576154 None:intergenic 30.0%
CATGTGTTCAATAAACAATC+AGG + chr8.3:19576780-19576799 MS.gene71908:CDS 30.0%
CCAAATCATAACAAGAAGTA+AGG + chr8.3:19576429-19576448 MS.gene71908:intron 30.0%
GAACATTTAGGAGATGTAAT+TGG + chr8.3:19577140-19577159 MS.gene71908:CDS 30.0%
TCAAATTTGTATCCACTACT+TGG - chr8.3:19576855-19576874 None:intergenic 30.0%
TCATGAAAAAAATGCTTACG+AGG + chr8.3:19576472-19576491 MS.gene71908:intron 30.0%
TCGTCTCAAAAGAGAATTTA+AGG + chr8.3:19576309-19576328 MS.gene71908:CDS 30.0%
TTCCAGAAGAATTCATTACT+GGG + chr8.3:19576898-19576917 MS.gene71908:CDS 30.0%
! CCTTACTTCTTGTTATGATT+TGG - chr8.3:19576432-19576451 None:intergenic 30.0%
! TATTGTTTTCTTCCTTTTGG+TGG + chr8.3:19577425-19577444 MS.gene71908:intron 30.0%
! TGTCACAAAAGCTATTGATT+TGG - chr8.3:19577187-19577206 None:intergenic 30.0%
! TTCATTACTGGGGTTTTTAA+AGG + chr8.3:19576909-19576928 MS.gene71908:CDS 30.0%
! TTTTCCCCAAGTAAACTATA+GGG + chr8.3:19576728-19576747 MS.gene71908:CDS 30.0%
ACATCTCCTAAATGTTCTTC+AGG - chr8.3:19577137-19577156 None:intergenic 35.0%
ATGATGTGGATTCAAATGTG+AGG + chr8.3:19577015-19577034 MS.gene71908:CDS 35.0%
CTTCCAGAAGAATTCATTAC+TGG + chr8.3:19576897-19576916 MS.gene71908:CDS 35.0%
CTTTCCCTATAGTTTACTTG+GGG - chr8.3:19576735-19576754 None:intergenic 35.0%
GACAGACATGGATTTATTCA+AGG - chr8.3:19576510-19576529 None:intergenic 35.0%
GATGAAGATCGGAAAGAAAA+AGG - chr8.3:19576610-19576629 None:intergenic 35.0%
GCAATCTTAATAACAGGAAC+AGG - chr8.3:19576136-19576155 None:intergenic 35.0%
GCTTTCCCTATAGTTTACTT+GGG - chr8.3:19576736-19576755 None:intergenic 35.0%
GGTTTGAAAGATACTATAGC+CGG + chr8.3:19576058-19576077 MS.gene71908:CDS 35.0%
GTGTTCAATAAACAATCAGG+TGG + chr8.3:19576783-19576802 MS.gene71908:CDS 35.0%
GTTACTCCTGAAGAACATTT+AGG + chr8.3:19577128-19577147 MS.gene71908:CDS 35.0%
TACTGAAACATCTCAGCAAT+AGG - chr8.3:19577481-19577500 None:intergenic 35.0%
TCACATTTGAATCCACATCA+TGG - chr8.3:19577016-19577035 None:intergenic 35.0%
TCCAGAAGAATTCATTACTG+GGG + chr8.3:19576899-19576918 MS.gene71908:CDS 35.0%
TGATGTGGATTCAAATGTGA+GGG + chr8.3:19577016-19577035 MS.gene71908:CDS 35.0%
TGCTTTCCCTATAGTTTACT+TGG - chr8.3:19576737-19576756 None:intergenic 35.0%
TGGTTACATCTGCAAATTGA+CGG - chr8.3:19576812-19576831 None:intergenic 35.0%
! AACCATACATTTTGAACCCA+TGG + chr8.3:19576827-19576846 MS.gene71908:CDS 35.0%
! AATAGCTTTTGTGACAAACC+AGG + chr8.3:19577191-19577210 MS.gene71908:CDS 35.0%
! GTTTTCCCCAAGTAAACTAT+AGG + chr8.3:19576727-19576746 MS.gene71908:CDS 35.0%
!! TACTGGGGTTTTTAAAGGAT+TGG + chr8.3:19576914-19576933 MS.gene71908:CDS 35.0%
!!! TCCATGTCAGCTTTAGTTTT+GGG - chr8.3:19576166-19576185 None:intergenic 35.0%
!!! TCTTTTGAGACGATCAACAA+TGG - chr8.3:19576302-19576321 None:intergenic 35.0%
ACCCAAAACTAAAGCTGACA+TGG + chr8.3:19576162-19576181 MS.gene71908:CDS 40.0%
ACCCCAGTAATGAATTCTTC+TGG - chr8.3:19576903-19576922 None:intergenic 40.0%
AGGTTCAAGCATTAACGGTT+TGG - chr8.3:19577090-19577109 None:intergenic 40.0%
ATGCAGGTAGAAGCTAATGT+TGG + chr8.3:19576705-19576724 MS.gene71908:intron 40.0%
CCTCTTTATCTTGGGATAAG+CGG - chr8.3:19576237-19576256 None:intergenic 40.0%
GCAGTTTGACAGGTTTGATA+CGG + chr8.3:19577549-19577568 MS.gene71908:CDS 40.0%
GCTGAGATGTTTCAGTATGT+CGG + chr8.3:19577484-19577503 MS.gene71908:CDS 40.0%
GGATGGTAATTACCATGATG+TGG + chr8.3:19577001-19577020 MS.gene71908:CDS 40.0%
GTCCATGGGTTCAAAATGTA+TGG - chr8.3:19576832-19576851 None:intergenic 40.0%
TAAAGCTGACATGGAGAAGA+TGG + chr8.3:19576171-19576190 MS.gene71908:CDS 40.0%
TATCCCAAGATAAAGAGGAC+CGG + chr8.3:19576239-19576258 MS.gene71908:CDS 40.0%
TCAGTATGTCGGTACACTTA+GGG + chr8.3:19577495-19577514 MS.gene71908:CDS 40.0%
TGGTTTAATCAAGCTTGCAG+AGG + chr8.3:19576198-19576217 MS.gene71908:CDS 40.0%
TTCAGTATGTCGGTACACTT+AGG + chr8.3:19577494-19577513 MS.gene71908:CDS 40.0%
! CTGTTTTCACAACCACCAAA+AGG - chr8.3:19577440-19577459 None:intergenic 40.0%
! GGAGATGTAATTGGTGATCT+CGG + chr8.3:19577149-19577168 MS.gene71908:CDS 40.0%
!! AAATGTGAGGGTATTCCAGT+TGG + chr8.3:19577028-19577047 MS.gene71908:CDS 40.0%
!! CTCCATGTCAGCTTTAGTTT+TGG - chr8.3:19576167-19576186 None:intergenic 40.0%
!! CTTTTGGTGGTTGTGAAAAC+AGG + chr8.3:19577438-19577457 MS.gene71908:intron 40.0%
ACTGCATTGAGTAGGATGCA+CGG - chr8.3:19577534-19577553 None:intergenic 45.0%
ATGAGCAATGGTGTTCTAGC+CGG + chr8.3:19576945-19576964 MS.gene71908:CDS 45.0%
ATGCCTCACTTCTGTGACTT+CGG - chr8.3:19576763-19576782 None:intergenic 45.0%
CATCCGGTCCTCTTTATCTT+GGG - chr8.3:19576245-19576264 None:intergenic 45.0%
CCGCTTATCCCAAGATAAAG+AGG + chr8.3:19576234-19576253 MS.gene71908:CDS 45.0%
CCGGATGATCATTCAAGGAA+CGG + chr8.3:19576258-19576277 MS.gene71908:CDS 45.0%
CCGTTCCTTGAATGATCATC+CGG - chr8.3:19576261-19576280 None:intergenic 45.0%
CCTACTCAATGCAGTTTGAC+AGG + chr8.3:19577539-19577558 MS.gene71908:CDS 45.0%
CCTGTCAAACTGCATTGAGT+AGG - chr8.3:19577542-19577561 None:intergenic 45.0%
CGGATGATCATTCAAGGAAC+GGG + chr8.3:19576259-19576278 MS.gene71908:CDS 45.0%
CTTGGGATAAGCGGAAAGAA+GGG - chr8.3:19576228-19576247 None:intergenic 45.0%
TATCCACTACTTGGGTCCAT+GGG - chr8.3:19576846-19576865 None:intergenic 45.0%
TCATCCGGTCCTCTTTATCT+TGG - chr8.3:19576246-19576265 None:intergenic 45.0%
TCCATCTGATCAAGCACGAA+TGG - chr8.3:19576109-19576128 None:intergenic 45.0%
TCCATTCGTGCTTGATCAGA+TGG + chr8.3:19576105-19576124 MS.gene71908:CDS 45.0%
TCTTGGGATAAGCGGAAAGA+AGG - chr8.3:19576229-19576248 None:intergenic 45.0%
TTTCCGAAGTCACAGAAGTG+AGG + chr8.3:19576757-19576776 MS.gene71908:CDS 45.0%
! AGCTTTTGTGACAAACCAGG+TGG + chr8.3:19577194-19577213 MS.gene71908:CDS 45.0%
! GGCAGCAAGAGAAGCTTTTA+GGG + chr8.3:19577049-19577068 MS.gene71908:CDS 45.0%
! TGGCAGCAAGAGAAGCTTTT+AGG + chr8.3:19577048-19577067 MS.gene71908:CDS 45.0%
! TTGGAAGAGTGCATGAGCAA+TGG + chr8.3:19576933-19576952 MS.gene71908:CDS 45.0%
! TTGGTGGTTGTGAAAACAGG+TGG + chr8.3:19577441-19577460 MS.gene71908:intron 45.0%
!! GCAAGAGAAGCTTTTAGGGA+AGG + chr8.3:19577053-19577072 MS.gene71908:CDS 45.0%
AAGCTTCTCTTGCTGCCAAC+TGG - chr8.3:19577046-19577065 None:intergenic 50.0%
ATCAAGCACGAATGGACCCT+TGG - chr8.3:19576101-19576120 None:intergenic 50.0%
CCATGTCTGTCATCCGATCA+AGG + chr8.3:19576519-19576538 MS.gene71908:intron 50.0%
CCTTGATCGGATGACAGACA+TGG - chr8.3:19576522-19576541 None:intergenic 50.0%
GACATGGAGAAGATGGAAGC+TGG + chr8.3:19576178-19576197 MS.gene71908:CDS 50.0%
GAGGACCGGATGATCATTCA+AGG + chr8.3:19576253-19576272 MS.gene71908:CDS 50.0%
GGTGATCTCGGCAGAAAAAG+AGG + chr8.3:19577161-19577180 MS.gene71908:CDS 50.0%
GTATCCACTACTTGGGTCCA+TGG - chr8.3:19576847-19576866 None:intergenic 50.0%
TACACCAACAACCGGAAAGC+CGG - chr8.3:19576967-19576986 None:intergenic 50.0%
TCAAGCACGAATGGACCCTT+GGG - chr8.3:19576100-19576119 None:intergenic 50.0%
TGACTTACCTTGAGTCCACC+TGG - chr8.3:19577212-19577231 None:intergenic 50.0%
! TGACAAACCAGGTGGACTCA+AGG + chr8.3:19577202-19577221 MS.gene71908:CDS 50.0%
!! ACACTTAGGGTGCTGACAGA+GGG + chr8.3:19577508-19577527 MS.gene71908:CDS 50.0%
!! TACACTTAGGGTGCTGACAG+AGG + chr8.3:19577507-19577526 MS.gene71908:CDS 50.0%
ACTGCGCGTACACCAACAAC+CGG - chr8.3:19576975-19576994 None:intergenic 55.0%
CAAGCACGAATGGACCCTTG+GGG - chr8.3:19576099-19576118 None:intergenic 55.0%
GAACCCATGGACCCAAGTAG+TGG + chr8.3:19576840-19576859 MS.gene71908:CDS 55.0%
GAGACGTTGTGTGACCCCAA+GGG + chr8.3:19576082-19576101 MS.gene71908:CDS 55.0%
GTACGCGCAGTACTTGTGGA+TGG + chr8.3:19576984-19577003 MS.gene71908:CDS 55.0%
TGAGACGTTGTGTGACCCCA+AGG + chr8.3:19576081-19576100 MS.gene71908:CDS 55.0%
TGGTGTACGCGCAGTACTTG+TGG + chr8.3:19576980-19576999 MS.gene71908:CDS 55.0%
! TGGTGTTCTAGCCGGCTTTC+CGG + chr8.3:19576953-19576972 MS.gene71908:CDS 55.0%
GGGGTCACACAACGTCTCAC+CGG - chr8.3:19576080-19576099 None:intergenic 60.0%
! CTAGCCGGCTTTCCGGTTGT+TGG + chr8.3:19576960-19576979 MS.gene71908:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 19576037 19577612 19576037 ID=MS.gene71908
chr8.3 mRNA 19576037 19577612 19576037 ID=MS.gene71908.t1;Parent=MS.gene71908
chr8.3 exon 19576037 19576330 19576037 ID=MS.gene71908.t1.exon1;Parent=MS.gene71908.t1
chr8.3 CDS 19576037 19576330 19576037 ID=cds.MS.gene71908.t1;Parent=MS.gene71908.t1
chr8.3 exon 19576711 19577223 19576711 ID=MS.gene71908.t1.exon2;Parent=MS.gene71908.t1
chr8.3 CDS 19576711 19577223 19576711 ID=cds.MS.gene71908.t1;Parent=MS.gene71908.t1
chr8.3 exon 19577460 19577612 19577460 ID=MS.gene71908.t1.exon3;Parent=MS.gene71908.t1
chr8.3 CDS 19577460 19577612 19577460 ID=cds.MS.gene71908.t1;Parent=MS.gene71908.t1
Gene Sequence

>MS.gene71908

ATGGATATTGTTACTCTTGTTGGTTTGAAAGATACTATAGCCGGTGAGACGTTGTGTGACCCCAAGGGTCCATTCGTGCTTGATCAGATGGACTTCCCTGTTCCTGTTATTAAGATTGCAATTGAACCCAAAACTAAAGCTGACATGGAGAAGATGGAAGCTGGTTTAATCAAGCTTGCAGAGGAAGACCCTTCTTTCCGCTTATCCCAAGATAAAGAGGACCGGATGATCATTCAAGGAACGGGAGAATTGCATCTTGAAACCATTGTTGATCGTCTCAAAAGAGAATTTAAGGTTATATTCTTTATTTCGTTTATGAGAATTTTCTGTATCTGTTAACATGGTTGTGTTTTTTCTCTCTCAATTTATCATTCATATATATAGTTACAATTCCAAATCATAACAAGAAGTAAGGAGAATAAATGAATGAATTCGTCATGAAAAAAATGCTTACGAGGCATGACTATGACCCTTGAATAAATCCATGTCTGTCATCCGATCAAGGATGATTATTTGTTAATTGATGCTATTTTTCTACCCCTATTATATGATTACTTCCTTGAGATGATTCCTTTTTCTTTCCGATCTTCATCAGTTTTATGTAAGAATGTGTATGTTTTTATGTGATAGCATAAATTTTGTGAAGATCACATATCTAATGTTTGTTAATGCAGGTAGAAGCTAATGTTGGTTTTCCCCAAGTAAACTATAGGGAAAGCATTTCCGAAGTCACAGAAGTGAGGCATGTGTTCAATAAACAATCAGGTGGACACCGTCAATTTGCAGATGTAACCATACATTTTGAACCCATGGACCCAAGTAGTGGATACAAATTTGAGAATAAAATCAAAGAAGAAGCACTTCCAGAAGAATTCATTACTGGGGTTTTTAAAGGATTGGAAGAGTGCATGAGCAATGGTGTTCTAGCCGGCTTTCCGGTTGTTGGTGTACGCGCAGTACTTGTGGATGGTAATTACCATGATGTGGATTCAAATGTGAGGGTATTCCAGTTGGCAGCAAGAGAAGCTTTTAGGGAAGGAATGAGAAAAGCCAAACCGTTAATGCTTGAACCTATAATGAAAGTTGAAATTGTTACTCCTGAAGAACATTTAGGAGATGTAATTGGTGATCTCGGCAGAAAAAGAGGCCAAATCAATAGCTTTTGTGACAAACCAGGTGGACTCAAGGTAAGTCACAAAACACTGTTCTCCATGTGCATTTATTAAATTTGAAGGTATGATTTGAAAGCTATGTAGCACGACACTTCATATATATTAATGACGTATCTGGTGTCCAATACTTGTAGTTACATTTCAATTTCTTCCATTTTTCAAATTATTATGGATGTCAATGTCTCAGTTGTGTTTGTTGTATCATCTAGAACTGAATATTGTTTTCTTCCTTTTGGTGGTTGTGAAAACAGGTGGTTGATTCATTAGTACCTATTGCTGAGATGTTTCAGTATGTCGGTACACTTAGGGTGCTGACAGAGGGCCGTGCATCCTACTCAATGCAGTTTGACAGGTTTGATACGGTATCTCGACACATTCAGAATGAACTTGCCTCAGATTATTGA

Protein sequence

>MS.gene71908.t1

MDIVTLVGLKDTIAGETLCDPKGPFVLDQMDFPVPVIKIAIEPKTKADMEKMEAGLIKLAEEDPSFRLSQDKEDRMIIQGTGELHLETIVDRLKREFKVEANVGFPQVNYRESISEVTEVRHVFNKQSGGHRQFADVTIHFEPMDPSSGYKFENKIKEEALPEEFITGVFKGLEECMSNGVLAGFPVVGVRAVLVDGNYHDVDSNVRVFQLAAREAFREGMRKAKPLMLEPIMKVEIVTPEEHLGDVIGDLGRKRGQINSFCDKPGGLKVVDSLVPIAEMFQYVGTLRVLTEGRASYSMQFDRFDTVSRHIQNELASDY