AlfalfaGEDB | MS.gene71908

M. sativa cultivar XinJiangDaYe / MS.gene71908

KEGG: K02355
GO: GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00679.27 PF03764.21 PF14492.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71908.t1	XP_017441072.1	75.1	317	78	1	2	317	456	772	3.10E-132	481.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71908.t1	P34811	74.1	317	81	1	2	317	464	780	8.1e-134	478.0

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71908.t1	A0A0L9TR12	75.1	317	78	1	2	317	456	772	2.2e-132	481.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene71908	0.838043	3.63E-57	-1.69E-46
MS.gene049171	MS.gene71908	0.865249	6.77E-65	-1.69E-46
MS.gene049173	MS.gene71908	0.835997	1.21E-56	-1.69E-46
MS.gene049217	MS.gene71908	0.830967	2.18E-55	-1.69E-46
MS.gene049222	MS.gene71908	0.8642	1.44E-64	-1.69E-46
MS.gene049285	MS.gene71908	0.837115	6.29E-57	-1.69E-46
MS.gene049320	MS.gene71908	0.838802	2.32E-57	-1.69E-46
MS.gene049396	MS.gene71908	0.809203	2.12E-50	-1.69E-46
MS.gene049488	MS.gene71908	0.800361	1.49E-48	-1.69E-46
MS.gene049609	MS.gene71908	0.881475	2.33E-70	-1.69E-46

Showing 1 to 10 of 139 entries

Previous1 2 3 4 5…14Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71908.t1	MTR_4g101750	74.763	317	79	1	2	317	456	772	1.02e-168	488
MS.gene71908.t1	MTR_4g101750	73.835	279	71	2	2	278	456	734	8.95e-142	418
MS.gene71908.t1	MTR_4g101740	73.063	271	37	2	1	271	1	235	1.04e-132	377
MS.gene71908.t1	MTR_7g044770	36.250	320	199	4	3	319	250	567	1.41e-66	219
MS.gene71908.t1	MTR_7g044770	36.250	320	199	4	3	319	427	744	1.93e-65	219
MS.gene71908.t1	MTR_2g020660	34.579	321	185	6	3	319	421	720	8.21e-56	192
MS.gene71908.t1	MTR_1g048000	26.593	361	207	13	2	308	450	806	2.07e-22	98.2
MS.gene71908.t1	MTR_2g069050	26.316	361	208	11	2	308	450	806	3.27e-22	97.8
MS.gene71908.t1	MTR_2g069310	26.316	361	208	11	2	308	450	806	3.56e-22	97.4
MS.gene71908.t1	MTR_2g069320	27.389	314	174	8	44	307	496	805	2.81e-18	85.9

Showing 1 to 10 of 10 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71908.t1	AT1G62750	72.240	317	87	1	2	317	460	776	2.40e-163	474
MS.gene71908.t1	AT1G45332	38.125	320	193	4	3	319	250	567	1.73e-70	229
MS.gene71908.t1	AT1G45332	38.125	320	193	4	3	319	430	747	5.13e-69	229
MS.gene71908.t1	AT2G45030	38.125	320	193	4	3	319	430	747	6.37e-69	228
MS.gene71908.t1	AT1G56070	26.316	361	208	11	2	308	450	806	6.01e-22	97.1
MS.gene71908.t1	AT1G56070	26.316	361	208	11	2	308	450	806	6.01e-22	97.1
MS.gene71908.t1	AT1G56070	26.316	361	208	11	2	308	450	806	6.01e-22	97.1
MS.gene71908.t1	AT3G12915	26.984	315	175	9	44	308	442	751	1.28e-18	87.0
MS.gene71908.t1	AT3G22980	35.345	116	72	3	2	114	502	617	7.90e-11	63.5
MS.gene71908.t1	AT3G22980	35.345	116	72	3	2	114	502	617	7.90e-11	63.5

Showing 1 to 10 of 11 entries

Previous1 2Next

Find 84 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTGAGGGTATTCCAGT+TGG	0.582925	8.3:+19577028	MS.gene71908:CDS
AAGCTTCTCTTGCTGCCAAC+TGG	0.389694	8.3:-19577043	None:intergenic
ACAATTTCAACTTTCATTAT+AGG	0.216886	8.3:-19577107	None:intergenic
ACACTTAGGGTGCTGACAGA+GGG	0.607819	8.3:+19577508	MS.gene71908:CDS
ACATCTCCTAAATGTTCTTC+AGG	0.320044	8.3:-19577134	None:intergenic
ACCCAAAACTAAAGCTGACA+TGG	0.611458	8.3:+19576162	MS.gene71908:CDS
ACCCCAGTAATGAATTCTTC+TGG	0.342666	8.3:-19576900	None:intergenic
ACTGCATTGAGTAGGATGCA+CGG	0.668859	8.3:-19577531	None:intergenic
ACTGCGCGTACACCAACAAC+CGG	0.534986	8.3:-19576972	None:intergenic
AGGTTCAAGCATTAACGGTT+TGG	0.428422	8.3:-19577087	None:intergenic

Showing 1 to 10 of 84 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAAAAGGAATCATCTCA+AGG	-	chr8.3:19576597-19576616	None:intergenic	30.0%
ACAGACATGGATTTATTCAA+GGG	-	chr8.3:19576509-19576528	None:intergenic	30.0%
ATGGATATTGTTACTCTTGT+TGG	+	chr8.3:19576037-19576056	MS.gene71908:CDS	30.0%
CAAATTTGTATCCACTACTT+GGG	-	chr8.3:19576854-19576873	None:intergenic	30.0%
CAATCTTAATAACAGGAACA+GGG	-	chr8.3:19576135-19576154	None:intergenic	30.0%
CATGTGTTCAATAAACAATC+AGG	+	chr8.3:19576780-19576799	MS.gene71908:CDS	30.0%
CCAAATCATAACAAGAAGTA+AGG	+	chr8.3:19576429-19576448	MS.gene71908:intron	30.0%
GAACATTTAGGAGATGTAAT+TGG	+	chr8.3:19577140-19577159	MS.gene71908:CDS	30.0%
TCAAATTTGTATCCACTACT+TGG	-	chr8.3:19576855-19576874	None:intergenic	30.0%
TCATGAAAAAAATGCTTACG+AGG	+	chr8.3:19576472-19576491	MS.gene71908:intron	30.0%

Showing 1 to 10 of 123 entries

Previous1 2 3 4 5…13Next

Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	19576037	19577612	19576037	ID=MS.gene71908
chr8.3	mRNA	19576037	19577612	19576037	ID=MS.gene71908.t1;Parent=MS.gene71908
chr8.3	exon	19576037	19576330	19576037	ID=MS.gene71908.t1.exon1;Parent=MS.gene71908.t1
chr8.3	CDS	19576037	19576330	19576037	ID=cds.MS.gene71908.t1;Parent=MS.gene71908.t1
chr8.3	exon	19576711	19577223	19576711	ID=MS.gene71908.t1.exon2;Parent=MS.gene71908.t1
chr8.3	CDS	19576711	19577223	19576711	ID=cds.MS.gene71908.t1;Parent=MS.gene71908.t1
chr8.3	exon	19577460	19577612	19577460	ID=MS.gene71908.t1.exon3;Parent=MS.gene71908.t1
chr8.3	CDS	19577460	19577612	19577460	ID=cds.MS.gene71908.t1;Parent=MS.gene71908.t1

Gene Sequence

>MS.gene71908

ATGGATATTGTTACTCTTGTTGGTTTGAAAGATACTATAGCCGGTGAGACGTTGTGTGACCCCAAGGGTCCATTCGTGCTTGATCAGATGGACTTCCCTGTTCCTGTTATTAAGATTGCAATTGAACCCAAAACTAAAGCTGACATGGAGAAGATGGAAGCTGGTTTAATCAAGCTTGCAGAGGAAGACCCTTCTTTCCGCTTATCCCAAGATAAAGAGGACCGGATGATCATTCAAGGAACGGGAGAATTGCATCTTGAAACCATTGTTGATCGTCTCAAAAGAGAATTTAAGGTTATATTCTTTATTTCGTTTATGAGAATTTTCTGTATCTGTTAACATGGTTGTGTTTTTTCTCTCTCAATTTATCATTCATATATATAGTTACAATTCCAAATCATAACAAGAAGTAAGGAGAATAAATGAATGAATTCGTCATGAAAAAAATGCTTACGAGGCATGACTATGACCCTTGAATAAATCCATGTCTGTCATCCGATCAAGGATGATTATTTGTTAATTGATGCTATTTTTCTACCCCTATTATATGATTACTTCCTTGAGATGATTCCTTTTTCTTTCCGATCTTCATCAGTTTTATGTAAGAATGTGTATGTTTTTATGTGATAGCATAAATTTTGTGAAGATCACATATCTAATGTTTGTTAATGCAGGTAGAAGCTAATGTTGGTTTTCCCCAAGTAAACTATAGGGAAAGCATTTCCGAAGTCACAGAAGTGAGGCATGTGTTCAATAAACAATCAGGTGGACACCGTCAATTTGCAGATGTAACCATACATTTTGAACCCATGGACCCAAGTAGTGGATACAAATTTGAGAATAAAATCAAAGAAGAAGCACTTCCAGAAGAATTCATTACTGGGGTTTTTAAAGGATTGGAAGAGTGCATGAGCAATGGTGTTCTAGCCGGCTTTCCGGTTGTTGGTGTACGCGCAGTACTTGTGGATGGTAATTACCATGATGTGGATTCAAATGTGAGGGTATTCCAGTTGGCAGCAAGAGAAGCTTTTAGGGAAGGAATGAGAAAAGCCAAACCGTTAATGCTTGAACCTATAATGAAAGTTGAAATTGTTACTCCTGAAGAACATTTAGGAGATGTAATTGGTGATCTCGGCAGAAAAAGAGGCCAAATCAATAGCTTTTGTGACAAACCAGGTGGACTCAAGGTAAGTCACAAAACACTGTTCTCCATGTGCATTTATTAAATTTGAAGGTATGATTTGAAAGCTATGTAGCACGACACTTCATATATATTAATGACGTATCTGGTGTCCAATACTTGTAGTTACATTTCAATTTCTTCCATTTTTCAAATTATTATGGATGTCAATGTCTCAGTTGTGTTTGTTGTATCATCTAGAACTGAATATTGTTTTCTTCCTTTTGGTGGTTGTGAAAACAGGTGGTTGATTCATTAGTACCTATTGCTGAGATGTTTCAGTATGTCGGTACACTTAGGGTGCTGACAGAGGGCCGTGCATCCTACTCAATGCAGTTTGACAGGTTTGATACGGTATCTCGACACATTCAGAATGAACTTGCCTCAGATTATTGA

Protein sequence

>MS.gene71908.t1

MDIVTLVGLKDTIAGETLCDPKGPFVLDQMDFPVPVIKIAIEPKTKADMEKMEAGLIKLAEEDPSFRLSQDKEDRMIIQGTGELHLETIVDRLKREFKVEANVGFPQVNYRESISEVTEVRHVFNKQSGGHRQFADVTIHFEPMDPSSGYKFENKIKEEALPEEFITGVFKGLEECMSNGVLAGFPVVGVRAVLVDGNYHDVDSNVRVFQLAAREAFREGMRKAKPLMLEPIMKVEIVTPEEHLGDVIGDLGRKRGQINSFCDKPGGLKVVDSLVPIAEMFQYVGTLRVLTEGRASYSMQFDRFDTVSRHIQNELASDY