AlfalfaGEDB | MsG0880047168.01

M. sativa cultivar ZhongmuNo.1 / MsG0880047168.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047168.01.T01	A0A396II71	93.651	63	4	0	1	63	1	63	5.45e-11	72.0

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047899.01	MsG0880047168.01	0.828463	8.864504e-55	8.817713e-52
MsG0080048727.01	MsG0880047168.01	0.809944	1.472960e-50	8.764691e-48
MsG0080048802.01	MsG0880047168.01	0.815003	1.154962e-51	7.868998e-49
MsG0080048876.01	MsG0880047168.01	0.801747	7.782316e-49	3.745602e-46
MsG0080049029.01	MsG0880047168.01	0.838672	2.502327e-57	3.375594e-54
MsG0080049039.01	MsG0880047168.01	0.806845	6.748553e-50	3.701510e-47
MsG0080049040.01	MsG0880047168.01	0.871176	8.340439e-67	3.332036e-63
MsG0080049068.01	MsG0880047168.01	0.858359	8.696699e-63	2.213681e-59
MsG0180000670.01	MsG0880047168.01	0.825497	4.539505e-54	4.144526e-51
MsG0180000677.01	MsG0880047168.01	0.814537	1.464638e-51	9.854073e-49

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047168.01.T01	MTR_4g122180	93.651	63	4	0	1	63	1	63	2.41e-12	65.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 160 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTCAAACCCTATCACCGC+CGG	0.543041	8:-82900831	None:intergenic
AACTTTGGTGGAGGTGGCGT+GGG	0.417311	8:+82900164	MsG0880047168.01.T01:CDS
AATGGTGGTGGTGTAGGTGG+AGG	0.474194	8:+82900518	MsG0880047168.01.T01:CDS
ACCACCTCCGAAGCCACCTC+CGG	0.482538	8:-82900495	None:intergenic
ACTGGTGGAGGTGCCGGAGG+TGG	0.429321	8:+82900482	MsG0880047168.01.T01:CDS
ACTTGCTGTGATATTTGCAT+TGG	0.561478	8:+82900091	MsG0880047168.01.T01:CDS
AGCGGTGGTGGTATAGGTGG+AGG	0.493657	8:+82900422	MsG0880047168.01.T01:CDS
AGGCGGTGCCGGCGGTGATA+GGG	0.472198	8:+82900823	MsG0880047168.01.T01:CDS
AGGTTCTGGTGGAGGCTTTG+GGG	0.376982	8:+82900688	MsG0880047168.01.T01:CDS
AGTGCTGGAGATGGTGCAGG+TGG	0.631677	8:+82900269	MsG0880047168.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGATAGGAACATCTGAATGC+CGG	+	Chr8:82900114-82900133	MsG0880047168.01.T01:CDS	40.0%
TTTGTTGACAACTTTGGTGG+AGG	+	Chr8:82900155-82900174	MsG0880047168.01.T01:CDS	40.0%
GTTGACAACTTTGGTGGAGG+TGG	+	Chr8:82900158-82900177	MsG0880047168.01.T01:CDS	50.0%
TTTGGAGGAGGAATTGGAGG+TGG	+	Chr8:82900320-82900339	MsG0880047168.01.T01:CDS	50.0%
TTTGGAGGTGGTAAAGGTGG+TGG	+	Chr8:82900296-82900315	MsG0880047168.01.T01:CDS	50.0%
AACTTTGGTGGAGGTGGCGT+GGG	+	Chr8:82900164-82900183	MsG0880047168.01.T01:CDS	55.0%
ATTGGAGGTGGACATGGTGG+TGG	+	Chr8:82900386-82900405	MsG0880047168.01.T01:CDS	55.0%
ATTGGAGGTGGTCATGGTGG+TGG	+	Chr8:82900332-82900351	MsG0880047168.01.T01:CDS	55.0%
GGAATTGGAGGTGGACATGG+TGG	+	Chr8:82900383-82900402	MsG0880047168.01.T01:CDS	55.0%
GGAATTGGAGGTGGTCATGG+TGG	+	Chr8:82900329-82900348	MsG0880047168.01.T01:CDS	55.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	82900062	82900850	82900062	ID=MsG0880047168.01;Name=MsG0880047168.01
Chr8	mRNA	82900062	82900850	82900062	ID=MsG0880047168.01.T01;Parent=MsG0880047168.01;Name=MsG0880047168.01.T01;_AED=0.49;_eAED=0.49;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|262
Chr8	exon	82900062	82900850	82900062	ID=MsG0880047168.01.T01:exon:35367;Parent=MsG0880047168.01.T01
Chr8	CDS	82900062	82900850	82900062	ID=MsG0880047168.01.T01:cds;Parent=MsG0880047168.01.T01

Gene Sequence

>MsG0880047168.01.T01

ATGGGAAATTTACACAAGTATGTTGTAGTACTTGCTGTGATATTTGCATTGGTGATAGGAACATCTGAATGCCGGAAAATACAAAAAGATGAATTTGTTGACAACTTTGGTGGAGGTGGCGTGGGTGGTGGTGCCGGCGGAGGTTTTGGTGGCGGCAGTGGTGGAGGTGTTGGAGGAGGACTTGGACACGGTGGTGGCTTTGGAGGCAGTGCTGGAGATGGTGCAGGTGGAGGCTTTGGAGGTGGTAAAGGTGGTGGTTTTGGAGGAGGAATTGGAGGTGGTCATGGTGGTGGACTAGGTGGAGGTGGTGGTGCAGGTGGTGGAATTGGAGGTGGACATGGTGGTGGAATCGGGGGAGGAAGCGGTGGTGGTATAGGTGGAGGAGGAGGCTCTGGTGGAGGCATTGGAGGTGGTGCTGGAACTGGTGGAGGTGCCGGAGGTGGCTTCGGAGGTGGTAATGGTGGTGGTGTAGGTGGAGGAGGAGGAGTCGGTGGAGGCATTGGAGGTGGTTCTGGTGGTGGTGCAGGCGGAGGAATTGGTGGGGGTGGGGGTGCAGGTGGAGGTGCTGGTGGAGGCTTTGGAGGTGGTGCTGGAGCCGGTGGAGGTGCGGGTGGTGGAGTAGGTGGAGGTTCTGGTGGAGGCTTTGGGGGTGGTGCTGGAGGTGGTGGAGGTGCAGGTGGAGGGGCTGGTGGAGGATTTGGCGGTGGTGCCGGAGGTGGTGCTGGTGGAGGCTTTGGAGGCGGCGCAGGTGGTGGTTTTGGAGGCGGTGCCGGCGGTGATAGGGTTTGA

Protein sequence

>MsG0880047168.01.T01

MGNLHKYVVVLAVIFALVIGTSECRKIQKDEFVDNFGGGGVGGGAGGGFGGGSGGGVGGGLGHGGGFGGSAGDGAGGGFGGGKGGGFGGGIGGGHGGGLGGGGGAGGGIGGGHGGGIGGGSGGGIGGGGGSGGGIGGGAGTGGGAGGGFGGGNGGGVGGGGGVGGGIGGGSGGGAGGGIGGGGGAGGGAGGGFGGGAGAGGGAGGGVGGGSGGGFGGGAGGGGGAGGGAGGGFGGGAGGGAGGGFGGGAGGGFGGGAGGDRV*