AlfalfaGEDB | MsG0280009775.01

M. sativa cultivar ZhongmuNo.1 / MsG0280009775.01

KEGG: -
GO: GO:0008171
PFAM: PF01596

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009775.01.T01	XP_013464364.1	95.638	298	12	1	1	297	1	298	0	587

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009775.01.T01	Q9XGP7	44.915	236	116	5	74	296	16	250	1.39E-54	181

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009775.01.T01	A0A072V8S2	95.638	298	12	1	1	297	1	298	0.0	587

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048727.01	MsG0280009775.01	0.813577	2.385182e-51	1.563543e-48
MsG0080048777.01	MsG0280009775.01	0.834078	3.689997e-56	4.331721e-53
MsG0080048780.01	MsG0280009775.01	0.830153	3.447856e-55	3.602891e-52
MsG0080048929.01	MsG0280009775.01	0.808640	2.804189e-50	1.611768e-47
MsG0080049039.01	MsG0280009775.01	0.817642	2.966072e-52	2.172133e-49
MsG0080049063.01	MsG0280009775.01	0.817199	3.731890e-52	2.700031e-49
MsG0080049068.01	MsG0280009775.01	0.812014	5.245527e-51	3.297108e-48
MsG0180000352.01	MsG0280009775.01	0.803054	4.185897e-49	2.082812e-46
MsG0180001175.01	MsG0280009775.01	0.810293	1.238476e-50	7.436690e-48
MsG0180001270.01	MsG0280009775.01	0.807032	6.161099e-50	3.395629e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009775.01.T01	MTR_2g070410	95.638	298	12	1	1	297	1	298	0.0	587
MsG0280009775.01.T01	MTR_2g070410	95.785	261	10	1	1	260	1	261	0.0	513
MsG0280009775.01.T01	MTR_8g021225	38.710	217	123	4	90	296	17	233	7.80e-47	157
MsG0280009775.01.T01	MTR_4g085590	38.710	217	123	4	90	296	29	245	1.96e-45	154
MsG0280009775.01.T01	MTR_4g094368	38.636	220	124	4	87	295	8	227	2.62e-44	150
MsG0280009775.01.T01	MTR_4g094815	36.726	226	115	6	90	296	30	246	5.44e-42	145
MsG0280009775.01.T01	MTR_4g094925	37.445	227	112	9	90	296	25	241	1.66e-41	144
MsG0280009775.01.T01	MTR_8g101900	40.741	216	119	4	90	296	18	233	4.91e-41	142
MsG0280009775.01.T01	MTR_4g094898	38.053	226	112	7	90	296	30	246	1.69e-40	141
MsG0280009775.01.T01	MTR_4g094812	36.123	227	115	8	90	296	28	244	4.13e-40	140

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009775.01.T01	AT3G62000	74.900	251	60	1	50	297	28	278	2.94e-140	397
MsG0280009775.01.T01	AT3G62000	73.640	239	60	1	50	285	28	266	3.39e-128	369
MsG0280009775.01.T01	AT3G61990	75.000	228	54	1	70	297	66	290	4.56e-123	353
MsG0280009775.01.T01	AT4G26220	42.009	219	112	4	90	296	15	230	2.82e-52	171
MsG0280009775.01.T01	AT4G34050	39.171	217	122	4	90	296	41	257	5.65e-47	159
MsG0280009775.01.T01	AT4G34050	39.171	217	122	4	90	296	68	284	9.86e-47	159
MsG0280009775.01.T01	AT1G67990	38.710	217	122	4	90	296	16	231	1.52e-45	154
MsG0280009775.01.T01	AT1G67980	38.710	217	121	4	90	296	16	230	3.17e-45	153
MsG0280009775.01.T01	AT1G24735	35.484	217	130	3	90	296	22	238	6.21e-41	142
MsG0280009775.01.T01	AT1G24735	35.789	190	117	1	112	296	4	193	1.50e-38	135

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Find 103 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTGCCTTACAGAGAAAT+AGG	0.329324	2:-57796637	MsG0280009775.01.T01:five_prime_UTR
AAGAAACAGTTCCATCGGTG+AGG	0.701250	2:-57796363	MsG0280009775.01.T01:CDS
AAGAAGTATTATCAACTTGC+TGG	0.405066	2:-57794008	MsG0280009775.01.T01:CDS
AAGAGAGTTACGTGAAAGAT+AGG	0.387671	2:-57796586	MsG0280009775.01.T01:five_prime_UTR
AAGGCAATTTCACAAACACT+TGG	0.623522	2:+57796650	None:intergenic
AATAGATTCAGATGTGTAGA+TGG	0.376969	2:-57792462	MsG0280009775.01.T01:three_prime_UTR
AATCTCTTTGGCTGACCTTG+CGG	0.556804	2:-57792685	MsG0280009775.01.T01:three_prime_UTR
ACTCTCGCTTTGCGAAAGAG+AGG	0.647125	2:+57792326	None:intergenic
ACTTGCTGGTGTTTCACATA+AGG	0.432358	2:-57793994	MsG0280009775.01.T01:intron
AGAACATAATCATACAACCG+GGG	0.758190	2:+57796287	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCGCAATCAAAATCGA+AGG	-	Chr2:57793847-57793866	MsG0280009775.01.T01:intron	30.0%
AAAATCGCAATCAAAATCGA+TGG	-	Chr2:57793847-57793866	MsG0280009775.01.T01:intron	30.0%
AAATTGCCTTACAGAGAAAT+AGG	-	Chr2:57792427-57792446	MsG0280009775.01.T01:three_prime_UTR	30.0%
AATAAGCTGAAAACAGCTTA+TGG	+	Chr2:57795391-57795410	None:intergenic	30.0%
AATAGATTCAGATGTGTAGA+TGG	-	Chr2:57796602-57796621	MsG0280009775.01.T01:five_prime_UTR	30.0%
AATATGTATGTGATACCCTT+TGG	-	Chr2:57794660-57794679	MsG0280009775.01.T01:intron	30.0%
AGTAAAGCTCAAAGATTGAA+AGG	-	Chr2:57792663-57792682	MsG0280009775.01.T01:three_prime_UTR	30.0%
AGTACTGCAAAAATGTATCT+TGG	+	Chr2:57793699-57793718	None:intergenic	30.0%
ATAGATTCAGATGTGTAGAT+GGG	-	Chr2:57796603-57796622	MsG0280009775.01.T01:five_prime_UTR	30.0%
ATAGGTATAATTACCCTGAA+TGG	+	Chr2:57796292-57796311	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	57792287	57796799	57792287	ID=MsG0280009775.01;Name=MsG0280009775.01
Chr2	mRNA	57792287	57796799	57792287	ID=MsG0280009775.01.T01;Parent=MsG0280009775.01;Name=MsG0280009775.01.T01;_AED=0.41;_eAED=0.41;_QI=229\|1\|1\|1\|0.87\|0.88\|9\|555\|297
Chr2	exon	57792287	57792883	57792287	ID=MsG0280009775.01.T01:exon:16518;Parent=MsG0280009775.01.T01
Chr2	exon	57792990	57793067	57792990	ID=MsG0280009775.01.T01:exon:16517;Parent=MsG0280009775.01.T01
Chr2	exon	57793141	57793206	57793141	ID=MsG0280009775.01.T01:exon:16516;Parent=MsG0280009775.01.T01
Chr2	exon	57793323	57793392	57793323	ID=MsG0280009775.01.T01:exon:16515;Parent=MsG0280009775.01.T01
Chr2	exon	57793793	57793860	57793793	ID=MsG0280009775.01.T01:exon:16514;Parent=MsG0280009775.01.T01
Chr2	exon	57793995	57794120	57793995	ID=MsG0280009775.01.T01:exon:16513;Parent=MsG0280009775.01.T01
Chr2	exon	57794695	57794778	57794695	ID=MsG0280009775.01.T01:exon:16512;Parent=MsG0280009775.01.T01
Chr2	exon	57796128	57796181	57796128	ID=MsG0280009775.01.T01:exon:16511;Parent=MsG0280009775.01.T01
Chr2	exon	57796265	57796799	57796265	ID=MsG0280009775.01.T01:exon:16510;Parent=MsG0280009775.01.T01
Chr2	five_prime_UTR	57796571	57796799	57796571	ID=MsG0280009775.01.T01:five_prime_utr;Parent=MsG0280009775.01.T01
Chr2	CDS	57796265	57796570	57796265	ID=MsG0280009775.01.T01:cds;Parent=MsG0280009775.01.T01
Chr2	CDS	57796128	57796181	57796128	ID=MsG0280009775.01.T01:cds;Parent=MsG0280009775.01.T01
Chr2	CDS	57794695	57794778	57794695	ID=MsG0280009775.01.T01:cds;Parent=MsG0280009775.01.T01
Chr2	CDS	57793995	57794120	57793995	ID=MsG0280009775.01.T01:cds;Parent=MsG0280009775.01.T01
Chr2	CDS	57793793	57793860	57793793	ID=MsG0280009775.01.T01:cds;Parent=MsG0280009775.01.T01
Chr2	CDS	57793323	57793392	57793323	ID=MsG0280009775.01.T01:cds;Parent=MsG0280009775.01.T01
Chr2	CDS	57793141	57793206	57793141	ID=MsG0280009775.01.T01:cds;Parent=MsG0280009775.01.T01
Chr2	CDS	57792990	57793067	57792990	ID=MsG0280009775.01.T01:cds;Parent=MsG0280009775.01.T01
Chr2	CDS	57792842	57792883	57792842	ID=MsG0280009775.01.T01:cds;Parent=MsG0280009775.01.T01
Chr2	three_prime_UTR	57792287	57792841	57792287	ID=MsG0280009775.01.T01:three_prime_utr;Parent=MsG0280009775.01.T01

Gene Sequence

>MsG0280009775.01.T01

ATGGTAATTATAGGAATGACAAATAGTAGCATTAACTTGGTGTTTCATCATGGGTCAACATTGCCTCATGAACATGTAACTTCACTAGTGAGACCTTGTGCAAGGTTTAATTTGAATTATGCAACAACTTGGGGTGTTACCAATACTAGTAAAGCTCAAAGATTGAAAGGGTATAAGCAGCTTGTAAGAAACAGTTCCATCGGTGAGGTCGTTATTGCTAGTGATGAAAAGTATGGCAATAAGCAGGTTGTTAGTCTGACGCCCCGGTTGTATGATTATGTTCTCGAAAATGTTCGGGAACCAGAGATTCTAAGGCAGTTGCGAGCGGAGACTGCATCTATGCATGGAAGCCAGATGCAGGTGTCTCCTGATCAGGCACAACTACTGGCAATGCTTGTGCAGATTCTTGGAGCAGAACGGTGTATTGAAGTTGGCGTTTATACTGGCTACTCATCACTAGCGATAGCATTAGTCCTTCCAGAATCAGGTCGTTTAGTTGCCTGTGAAAGAGATGCCAGATCTCTTGATGTTGCTAAGAAGTATTATCAACTTGCTGGTGTTTCACATAAGGTGGATGTAAAACTTGGACTTGCAGCAGATTCCCTAGAATTTCTAATTATGAATGGTGAAGCTGGGAGCTATGATTTCGCATTTATTGATGCAGAGAAAAGGATGACTGAGAAATATTTTGAGATGCTACTACAACTGGTGAGGATTGGAGGTCTTATTGTAATTGATAACGTCCTTTGGCATGGAAAAGTTGCCGATCCGTTGGTAAGTGACTCTAAAACTACCAGCATTAGAAATTTTAATCAACGGTTAATGGAAGATAAGCGTGTAAGCCTCAGTATGGTACCTATTGGAGATGGGATGACAATCTGTCGGAAAAGATAA

Protein sequence

>MsG0280009775.01.T01

MVIIGMTNSSINLVFHHGSTLPHEHVTSLVRPCARFNLNYATTWGVTNTSKAQRLKGYKQLVRNSSIGEVVIASDEKYGNKQVVSLTPRLYDYVLENVREPEILRQLRAETASMHGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAIALVLPESGRLVACERDARSLDVAKKYYQLAGVSHKVDVKLGLAADSLEFLIMNGEAGSYDFAFIDAEKRMTEKYFEMLLQLVRIGGLIVIDNVLWHGKVADPLVSDSKTTSIRNFNQRLMEDKRVSLSMVPIGDGMTICRKR*