AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021754.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021754.01.T01 MTR_4g075710 94.629 391 17 2 1 387 1 391 0.0 734
MsG0480021754.01.T01 MTR_3g009280 39.316 117 68 2 112 228 218 331 3.90e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021754.01.T01 AT2G47450 68.896 299 84 4 72 369 83 373 5.00e-146 419

Find 144 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCATCTTCAATGGTTT+TGG 0.110155 4:-63894073 None:intergenic
CTTCTTGTTGTTGTTGGTTT+TGG 0.120489 4:-63894038 None:intergenic
CCACGATCGTCGCTGATTTC+AGG 0.144369 4:-63894522 None:intergenic
AGGCGAGAATTTGGAGTATT+TGG 0.173490 4:+63894707 MsG0480021754.01.T01:CDS
GAGAGGGAAAGGCGAGAATT+TGG 0.176713 4:+63894698 MsG0480021754.01.T01:CDS
CGGTGGTTGGTCGGAGAGTT+GGG 0.256269 4:+63894835 MsG0480021754.01.T01:CDS
GAGGTTTGTGGCGGAGGATT+TGG 0.282241 4:+63894770 MsG0480021754.01.T01:CDS
TGCTGAGGTAGAGGAGATAT+TGG 0.291945 4:+63894671 MsG0480021754.01.T01:CDS
AAGTGCTAATGAGTGGATTA+AGG 0.294879 4:+63894746 MsG0480021754.01.T01:CDS
TTTGGGAGATAGAGAGTGTT+TGG 0.299844 4:-63893929 None:intergenic
GAGAAATTGAAATGGGTGTT+TGG 0.304926 4:-63893947 None:intergenic
GCTCAACCTGGTAATGATAA+TGG 0.319295 4:+63894975 MsG0480021754.01.T01:CDS
CTCAACCTGGTAATGATAAT+GGG 0.336135 4:+63894976 MsG0480021754.01.T01:CDS
TTGGGTTGCGGCGGTGATAG+TGG 0.340095 4:-63894019 None:intergenic
ATTTGGAGTATTTGGTGAAA+TGG 0.345848 4:+63894715 MsG0480021754.01.T01:CDS
TGGGGTTAGAAGGTGTGGTT+AGG 0.347029 4:+63894622 MsG0480021754.01.T01:CDS
TTTGTTCTTCTTGTTGTTGT+TGG 0.347255 4:-63894044 None:intergenic
TCAGAATCAACATTCTCTTC+AGG 0.349082 4:-63894918 None:intergenic
TAAGGGGAGGTTTGTGGCGG+AGG 0.350973 4:+63894764 MsG0480021754.01.T01:CDS
GGTCGGAGAGTTGGGGATGA+TGG 0.358476 4:+63894843 MsG0480021754.01.T01:CDS
GAGTGAGGGATTGGTGGTGG+TGG 0.367431 4:-63893972 None:intergenic
AGAAATTGAAATGGGTGTTT+GGG 0.369320 4:-63893946 None:intergenic
TTTGGTGAAATGGATTGATT+TGG 0.374112 4:+63894878 MsG0480021754.01.T01:CDS
TTGGGTTTGAAGTGAGAAAT+TGG 0.374373 4:-63893910 None:intergenic
TGGGGAGTTTGGTGGGTTTG+TGG 0.385286 4:-63893999 None:intergenic
TGGGTTGCGGCGGTGATAGT+GGG 0.391227 4:-63894018 None:intergenic
GGCGGTGATAGTGGGGAGTT+TGG 0.394529 4:-63894010 None:intergenic
CTTCTCTTTGTCGCTGGCCT+CGG 0.397377 4:+63894354 MsG0480021754.01.T01:CDS
GTGGATTAAGGGGAGGTTTG+TGG 0.404919 4:+63894758 MsG0480021754.01.T01:CDS
AATTGCATTGGGTTACCCTT+TGG 0.405398 4:-63894588 None:intergenic
TTGGGAGATAGAGAGTGTTT+GGG 0.411160 4:-63893928 None:intergenic
GCGGTGGTTGGTCGGAGAGT+TGG 0.411640 4:+63894834 MsG0480021754.01.T01:CDS
CGGGGACCCAGGATGGTTCA+TGG 0.416520 4:-63894182 None:intergenic
GTGATAGTGGGGAGTTTGGT+GGG 0.419226 4:-63894006 None:intergenic
TTCTTCTACCGAATTGCATT+GGG 0.419690 4:-63894599 None:intergenic
ATGCAATTCGGTAGAAGAAT+GGG 0.429028 4:+63894603 MsG0480021754.01.T01:CDS
CCACCAGGGAGTTTCGTATT+CGG 0.429202 4:-63894232 None:intergenic
GTAGGATTCTTCATCTTCAA+TGG 0.429799 4:-63894079 None:intergenic
GTCTAAATTAGCGCCGGCTT+CGG 0.436997 4:-63894403 None:intergenic
GGTAGAAGAATGGGGTTAGA+AGG 0.440882 4:+63894612 MsG0480021754.01.T01:CDS
TGTGGCGGAGAGTGAGGGAT+TGG 0.446239 4:-63893981 None:intergenic
TTCTACGGTTGGTTTGAGTC+AGG 0.446921 4:+63895001 MsG0480021754.01.T01:CDS
TTGGTGAGGGATTATGAAGC+TGG 0.448197 4:+63894789 MsG0480021754.01.T01:CDS
AGTGCTAATGAGTGGATTAA+GGG 0.448382 4:+63894747 MsG0480021754.01.T01:CDS
AGGAGATATTGGAGAAGAGA+GGG 0.448945 4:+63894682 MsG0480021754.01.T01:CDS
TGAATATGCGGTGGCGGAAG+CGG 0.449825 4:+63894815 MsG0480021754.01.T01:CDS
ATTCTTCTACCGAATTGCAT+TGG 0.451311 4:-63894600 None:intergenic
TGTTGATTCTGAACTTGTTA+AGG 0.454695 4:+63894929 MsG0480021754.01.T01:CDS
TCGGCGCTGCACATGGCAGC+TGG 0.455637 4:+63894450 MsG0480021754.01.T01:CDS
AGTGAGAAATTGGTTTGGTA+AGG 0.461043 4:-63893900 None:intergenic
GTCGGAGAGTTGGGGATGAT+GGG 0.465281 4:+63894844 MsG0480021754.01.T01:CDS
TGGGTTTGTGGCGGAGAGTG+AGG 0.465303 4:-63893987 None:intergenic
GAGGAGATATTGGAGAAGAG+AGG 0.466614 4:+63894681 MsG0480021754.01.T01:CDS
CGCGGTAATCATCGGCTTCG+AGG 0.478617 4:-63894296 None:intergenic
GGGGTTAGAAGGTGTGGTTA+GGG 0.479574 4:+63894623 MsG0480021754.01.T01:CDS
GGAGAGTGAGGGATTGGTGG+TGG 0.480432 4:-63893975 None:intergenic
TTGATTTGGATGAACCTACT+TGG 0.481949 4:+63894892 MsG0480021754.01.T01:CDS
GGCGGAGAGTGAGGGATTGG+TGG 0.482139 4:-63893978 None:intergenic
GGGTTTGTGGCGGAGAGTGA+GGG 0.484149 4:-63893986 None:intergenic
AAGACGGCCATGAACCATCC+TGG 0.484365 4:+63894175 MsG0480021754.01.T01:CDS
TGGCGGAAGCGGTGGTTGGT+CGG 0.486825 4:+63894826 MsG0480021754.01.T01:CDS
TGGTCTATCGGCGCTGCACA+TGG 0.489885 4:+63894443 MsG0480021754.01.T01:CDS
TGGTGGGAGAGAAATTGAAA+TGG 0.490387 4:-63893955 None:intergenic
AAGGGTAACCCAATGCAATT+CGG 0.495249 4:+63894591 MsG0480021754.01.T01:CDS
ACGGTTGGTTTGAGTCAGGA+TGG 0.495715 4:+63895005 MsG0480021754.01.T01:CDS
GGAGTTTGGTGGGTTTGTGG+CGG 0.497643 4:-63893996 None:intergenic
ACCGCACTTCTCTTTGTCGC+TGG 0.497670 4:+63894348 MsG0480021754.01.T01:CDS
CGATAATAGCGGTGGTCTAT+CGG 0.502444 4:+63894431 MsG0480021754.01.T01:CDS
AGTGAGGGATTGGTGGTGGT+GGG 0.502593 4:-63893971 None:intergenic
GATAATGGGGTTTCTACGGT+TGG 0.503888 4:+63894990 MsG0480021754.01.T01:CDS
ATTTACGTCGCGGTAATCAT+CGG 0.507248 4:-63894304 None:intergenic
GCATGGAGTATCTCATTGAA+TGG 0.512323 4:+63894151 MsG0480021754.01.T01:CDS
TAATGATAATGGGGTTTCTA+CGG 0.516540 4:+63894986 MsG0480021754.01.T01:CDS
AATGCAATTCGGTAGAAGAA+TGG 0.520204 4:+63894602 MsG0480021754.01.T01:CDS
GTTTGAATATGCTGAGGTAG+AGG 0.521381 4:+63894662 MsG0480021754.01.T01:CDS
AATGAAGTCGGCGGGGACCC+AGG 0.522078 4:-63894193 None:intergenic
GGTGGGAGAGAAATTGAAAT+GGG 0.522870 4:-63893954 None:intergenic
GGTAAGGAACAAAGCTTCCA+TGG 0.525639 4:-63893884 None:intergenic
GGTGATAGTGGGGAGTTTGG+TGG 0.531145 4:-63894007 None:intergenic
TGATTTGGATGAACCTACTT+GGG 0.531703 4:+63894893 MsG0480021754.01.T01:CDS
TCTTTCGCAATGAAGTCGGC+GGG 0.535794 4:-63894201 None:intergenic
TTTGAAGTGAGAAATTGGTT+TGG 0.535825 4:-63893905 None:intergenic
AATCATCGGAAGCAAAGCCT+TGG 0.537362 4:+63894116 MsG0480021754.01.T01:CDS
AAGAATGGGGTTAGAAGGTG+TGG 0.541162 4:+63894617 MsG0480021754.01.T01:CDS
TTATTAAAAGCGACACCAAA+GGG 0.543433 4:+63894573 MsG0480021754.01.T01:CDS
TTGAAGATGAAGAATCCTAC+GGG 0.547644 4:+63894082 MsG0480021754.01.T01:CDS
TGTGGCGGAGGATTTGGTGA+GGG 0.548276 4:+63894776 MsG0480021754.01.T01:CDS
ATATTGGAGAAGAGAGGGAA+AGG 0.548437 4:+63894687 MsG0480021754.01.T01:CDS
AAGTCGGCGGGGACCCAGGA+TGG 0.551120 4:-63894189 None:intergenic
GCGGTGGCGGAAGCGGTGGT+TGG 0.555956 4:+63894822 MsG0480021754.01.T01:CDS
GCAAAATTGCTACTCGAGCT+CGG 0.556305 4:+63894492 MsG0480021754.01.T01:CDS
CATGCCGGTGGAATCTTCCA+AGG 0.558306 4:-63894133 None:intergenic
CGATCGTGGAAGAACAGCGT+TGG 0.562728 4:+63894536 MsG0480021754.01.T01:CDS
TGGTGAGGGATTATGAAGCT+GGG 0.564059 4:+63894790 MsG0480021754.01.T01:CDS
GTTAAGCTCTTAGCCGAAGC+CGG 0.567177 4:+63894390 MsG0480021754.01.T01:CDS
GAAACCCCATTATCATTACC+AGG 0.569354 4:-63894981 None:intergenic
TAACGCATGGCTCTGAGCCG+AGG 0.571678 4:-63894371 None:intergenic
AGACGGCCATGAACCATCCT+GGG 0.573016 4:+63894176 MsG0480021754.01.T01:CDS
AGTAATAATCAAGCTCAACC+TGG 0.576011 4:+63894963 MsG0480021754.01.T01:CDS
CCTGAAATCAGCGACGATCG+TGG 0.576549 4:+63894522 MsG0480021754.01.T01:CDS
TTCTCTTCAGGCTCCCAAGT+AGG 0.577107 4:-63894906 None:intergenic
TATTTGGTGAAATGGAAAGA+TGG 0.577745 4:+63894723 MsG0480021754.01.T01:CDS
GGGTTGCGGCGGTGATAGTG+GGG 0.578279 4:-63894017 None:intergenic
CGGTTGGTTTGAGTCAGGAT+GGG 0.578683 4:+63895006 MsG0480021754.01.T01:CDS
GTTATTAAAAGCGACACCAA+AGG 0.579363 4:+63894572 MsG0480021754.01.T01:CDS
GGTGGTTGGTCGGAGAGTTG+GGG 0.579680 4:+63894836 MsG0480021754.01.T01:CDS
TTGTGGCGGAGGATTTGGTG+AGG 0.581295 4:+63894775 MsG0480021754.01.T01:CDS
TGGGCTTGAATATGCGGTGG+CGG 0.583778 4:+63894809 MsG0480021754.01.T01:CDS
GATTAAGGGGAGGTTTGTGG+CGG 0.586684 4:+63894761 MsG0480021754.01.T01:CDS
TCGCCGAATACGAAACTCCC+TGG 0.587405 4:+63894229 MsG0480021754.01.T01:CDS
TTTCTAGCGGCGGTCCACCA+GGG 0.598996 4:-63894246 None:intergenic
ATTGAAGATGAAGAATCCTA+CGG 0.603300 4:+63894081 MsG0480021754.01.T01:CDS
GACGTCTTTCGCAATGAAGT+CGG 0.604930 4:-63894205 None:intergenic
GCAGCTGGATATGTAAGACC+TGG 0.608072 4:+63894465 MsG0480021754.01.T01:CDS
TTCAATGAGATACTCCATGC+CGG 0.612016 4:-63894148 None:intergenic
GTGCTAATGAGTGGATTAAG+GGG 0.614109 4:+63894748 MsG0480021754.01.T01:CDS
AAAGCCTTGGAAGATTCCAC+CGG 0.616621 4:+63894129 MsG0480021754.01.T01:CDS
TATCTCATTGAATGGAAAGA+CGG 0.616967 4:+63894159 MsG0480021754.01.T01:CDS
GAGAAGTGCGGTTCTACCGT+CGG 0.619719 4:-63894337 None:intergenic
GAACAGCGTTGGATTTAGCG+AGG 0.620558 4:+63894547 MsG0480021754.01.T01:CDS
GTCTTTCGCAATGAAGTCGG+CGG 0.623613 4:-63894202 None:intergenic
TTAGACCACCGCGATAATAG+CGG 0.624948 4:+63894420 MsG0480021754.01.T01:CDS
AACAGCGTTGGATTTAGCGA+GGG 0.625456 4:+63894548 MsG0480021754.01.T01:CDS
CTTGGAAGATTCCACCGGCA+TGG 0.625931 4:+63894134 MsG0480021754.01.T01:CDS
ATATGCGGTGGCGGAAGCGG+TGG 0.636649 4:+63894818 MsG0480021754.01.T01:CDS
TCAACCTGGTAATGATAATG+GGG 0.640024 4:+63894977 MsG0480021754.01.T01:CDS
CTAATGAGTGGATTAAGGGG+AGG 0.641319 4:+63894751 MsG0480021754.01.T01:CDS
TCGGCTAAGAGCTTAACGCA+TGG 0.645919 4:-63894384 None:intergenic
TGAAGCTGGGCTTGAATATG+CGG 0.647086 4:+63894803 MsG0480021754.01.T01:CDS
TGCAATTCGGTAGAAGAATG+GGG 0.674064 4:+63894604 MsG0480021754.01.T01:CDS
GACCACCGCGATAATAGCGG+TGG 0.675004 4:+63894423 MsG0480021754.01.T01:CDS
AAGATGGAAGTGCTAATGAG+TGG 0.675098 4:+63894739 MsG0480021754.01.T01:CDS
AATGAGATACTCCATGCCGG+TGG 0.686619 4:-63894145 None:intergenic
GCGGTGGTCTAAATTAGCGC+CGG 0.687716 4:-63894409 None:intergenic
CTTTCGCAATGAAGTCGGCG+GGG 0.694857 4:-63894200 None:intergenic
GACCACCGCTATTATCGCGG+TGG 0.697007 4:-63894425 None:intergenic
AGCTGGGCTTGAATATGCGG+TGG 0.699208 4:+63894806 MsG0480021754.01.T01:CDS
CCGAATACGAAACTCCCTGG+TGG 0.716377 4:+63894232 MsG0480021754.01.T01:CDS
TGCAGTGTTTGAATATGCTG+AGG 0.722562 4:+63894656 MsG0480021754.01.T01:CDS
AGTCTACTGCATTTACGTCG+CGG 0.730977 4:-63894314 None:intergenic
GCCAGCGACAAAGAGAAGTG+CGG 0.733493 4:-63894349 None:intergenic
ATAGACCACCGCTATTATCG+CGG 0.736604 4:-63894428 None:intergenic
GTAAATGCAGTAGACTCCGA+CGG 0.737539 4:+63894321 MsG0480021754.01.T01:CDS
TGAAGATGAAGAATCCTACG+GGG 0.810496 4:+63894083 MsG0480021754.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AGAAATTGAAATGGGTGTTT+GGG - Chr4:63893949-63893968 None:intergenic 30.0%
ATTGAAGATGAAGAATCCTA+CGG + Chr4:63894081-63894100 MsG0480021754.01.T01:CDS 30.0%
TATCTCATTGAATGGAAAGA+CGG + Chr4:63894159-63894178 MsG0480021754.01.T01:CDS 30.0%
TTATTAAAAGCGACACCAAA+GGG + Chr4:63894573-63894592 MsG0480021754.01.T01:CDS 30.0%
! ATTTGGAGTATTTGGTGAAA+TGG + Chr4:63894715-63894734 MsG0480021754.01.T01:CDS 30.0%
! TATTTGGTGAAATGGAAAGA+TGG + Chr4:63894723-63894742 MsG0480021754.01.T01:CDS 30.0%
! TCTTCATCTTCAATGGTTTT+GGG - Chr4:63894075-63894094 None:intergenic 30.0%
! TTCTTCATCTTCAATGGTTT+TGG - Chr4:63894076-63894095 None:intergenic 30.0%
! TTTGAAGTGAGAAATTGGTT+TGG - Chr4:63893908-63893927 None:intergenic 30.0%
!! TAATGATAATGGGGTTTCTA+CGG + Chr4:63894986-63895005 MsG0480021754.01.T01:CDS 30.0%
!! TGTTGATTCTGAACTTGTTA+AGG + Chr4:63894929-63894948 MsG0480021754.01.T01:CDS 30.0%
!! TTTGGTGAAATGGATTGATT+TGG + Chr4:63894878-63894897 MsG0480021754.01.T01:CDS 30.0%
!! TTTGTTCTTCTTGTTGTTGT+TGG - Chr4:63894047-63894066 None:intergenic 30.0%
!!! AGTATGAGTTTTTGGTGAAA+TGG + Chr4:63894868-63894887 MsG0480021754.01.T01:CDS 30.0%
!!! TTCTTGTTGTTGTTGGTTTT+GGG - Chr4:63894040-63894059 None:intergenic 30.0%
AATGCAATTCGGTAGAAGAA+TGG + Chr4:63894602-63894621 MsG0480021754.01.T01:CDS 35.0%
AGTAATAATCAAGCTCAACC+TGG + Chr4:63894963-63894982 MsG0480021754.01.T01:CDS 35.0%
ATGCAATTCGGTAGAAGAAT+GGG + Chr4:63894603-63894622 MsG0480021754.01.T01:CDS 35.0%
ATTCTTCTACCGAATTGCAT+TGG - Chr4:63894603-63894622 None:intergenic 35.0%
GAGAAATTGAAATGGGTGTT+TGG - Chr4:63893950-63893969 None:intergenic 35.0%
GGGGAAGTCAAAAAAATCAT+CGG + Chr4:63894102-63894121 MsG0480021754.01.T01:CDS 35.0%
GTAGGATTCTTCATCTTCAA+TGG - Chr4:63894082-63894101 None:intergenic 35.0%
GTTATTAAAAGCGACACCAA+AGG + Chr4:63894572-63894591 MsG0480021754.01.T01:CDS 35.0%
TCAGAATCAACATTCTCTTC+AGG - Chr4:63894921-63894940 None:intergenic 35.0%
TTCTTCTACCGAATTGCATT+GGG - Chr4:63894602-63894621 None:intergenic 35.0%
TTGAAGATGAAGAATCCTAC+GGG + Chr4:63894082-63894101 MsG0480021754.01.T01:CDS 35.0%
! ATTTTCGTCGGATTTTCTAG+CGG - Chr4:63894262-63894281 None:intergenic 35.0%
! CTCAACCTGGTAATGATAAT+GGG + Chr4:63894976-63894995 MsG0480021754.01.T01:CDS 35.0%
! TCAACCTGGTAATGATAATG+GGG + Chr4:63894977-63894996 MsG0480021754.01.T01:CDS 35.0%
! TGATTTGGATGAACCTACTT+GGG + Chr4:63894893-63894912 MsG0480021754.01.T01:CDS 35.0%
! TTGGGTTTGAAGTGAGAAAT+TGG - Chr4:63893913-63893932 None:intergenic 35.0%
!! AAGTGCTAATGAGTGGATTA+AGG + Chr4:63894746-63894765 MsG0480021754.01.T01:CDS 35.0%
!! AGTGAGAAATTGGTTTGGTA+AGG - Chr4:63893903-63893922 None:intergenic 35.0%
!! AGTGCTAATGAGTGGATTAA+GGG + Chr4:63894747-63894766 MsG0480021754.01.T01:CDS 35.0%
!! TGATGGGAAGTATGAGTTTT+TGG + Chr4:63894860-63894879 MsG0480021754.01.T01:CDS 35.0%
!! TTGATTTGGATGAACCTACT+TGG + Chr4:63894892-63894911 MsG0480021754.01.T01:CDS 35.0%
!!! CTTCTTGTTGTTGTTGGTTT+TGG - Chr4:63894041-63894060 None:intergenic 35.0%
AAGGGTAACCCAATGCAATT+CGG + Chr4:63894591-63894610 MsG0480021754.01.T01:CDS 40.0%
AATTGCATTGGGTTACCCTT+TGG - Chr4:63894591-63894610 None:intergenic 40.0%
AGGAGATATTGGAGAAGAGA+GGG + Chr4:63894682-63894701 MsG0480021754.01.T01:CDS 40.0%
ATATTGGAGAAGAGAGGGAA+AGG + Chr4:63894687-63894706 MsG0480021754.01.T01:CDS 40.0%
ATTTACGTCGCGGTAATCAT+CGG - Chr4:63894307-63894326 None:intergenic 40.0%
GAAACCCCATTATCATTACC+AGG - Chr4:63894984-63895003 None:intergenic 40.0%
GGTGGGAGAGAAATTGAAAT+GGG - Chr4:63893957-63893976 None:intergenic 40.0%
GTTTGAATATGCTGAGGTAG+AGG + Chr4:63894662-63894681 MsG0480021754.01.T01:CDS 40.0%
TGAAGATGAAGAATCCTACG+GGG + Chr4:63894083-63894102 MsG0480021754.01.T01:CDS 40.0%
TGCAATTCGGTAGAAGAATG+GGG + Chr4:63894604-63894623 MsG0480021754.01.T01:CDS 40.0%
TGCAGTGTTTGAATATGCTG+AGG + Chr4:63894656-63894675 MsG0480021754.01.T01:CDS 40.0%
TGGTGGGAGAGAAATTGAAA+TGG - Chr4:63893958-63893977 None:intergenic 40.0%
TTCAATGAGATACTCCATGC+CGG - Chr4:63894151-63894170 None:intergenic 40.0%
! AGGCGAGAATTTGGAGTATT+TGG + Chr4:63894707-63894726 MsG0480021754.01.T01:CDS 40.0%
! AGTAGCAATTTTGCTACTCC+AGG - Chr4:63894486-63894505 None:intergenic 40.0%
! GCATGGAGTATCTCATTGAA+TGG + Chr4:63894151-63894170 MsG0480021754.01.T01:CDS 40.0%
! GCTCAACCTGGTAATGATAA+TGG + Chr4:63894975-63894994 MsG0480021754.01.T01:CDS 40.0%
!! AAGATGGAAGTGCTAATGAG+TGG + Chr4:63894739-63894758 MsG0480021754.01.T01:CDS 40.0%
!! GTGCTAATGAGTGGATTAAG+GGG + Chr4:63894748-63894767 MsG0480021754.01.T01:CDS 40.0%
!! TTGGGAGATAGAGAGTGTTT+GGG - Chr4:63893931-63893950 None:intergenic 40.0%
!! TTTGGGAGATAGAGAGTGTT+TGG - Chr4:63893932-63893951 None:intergenic 40.0%
!!! ATCTTCAATGGTTTTGGGTG+TGG - Chr4:63894070-63894089 None:intergenic 40.0%
!!! GATTTTTTTGACTTCCCCGT+AGG - Chr4:63894100-63894119 None:intergenic 40.0%
!!! TGTTTTGAGGGCATTTTCGT+CGG - Chr4:63894274-63894293 None:intergenic 40.0%
!!! TTGTTGTTGGTTTTGGGTTG+CGG - Chr4:63894034-63894053 None:intergenic 40.0%
AAAGCCTTGGAAGATTCCAC+CGG + Chr4:63894129-63894148 MsG0480021754.01.T01:CDS 45.0%
AAGAATGGGGTTAGAAGGTG+TGG + Chr4:63894617-63894636 MsG0480021754.01.T01:CDS 45.0%
AATCATCGGAAGCAAAGCCT+TGG + Chr4:63894116-63894135 MsG0480021754.01.T01:CDS 45.0%
AGTCTACTGCATTTACGTCG+CGG - Chr4:63894317-63894336 None:intergenic 45.0%
ATAGACCACCGCTATTATCG+CGG - Chr4:63894431-63894450 None:intergenic 45.0%
CGATAATAGCGGTGGTCTAT+CGG + Chr4:63894431-63894450 MsG0480021754.01.T01:CDS 45.0%
GACGTCTTTCGCAATGAAGT+CGG - Chr4:63894208-63894227 None:intergenic 45.0%
GAGGAGATATTGGAGAAGAG+AGG + Chr4:63894681-63894700 MsG0480021754.01.T01:CDS 45.0%
GCAAAATTGCTACTCGAGCT+CGG + Chr4:63894492-63894511 MsG0480021754.01.T01:CDS 45.0%
GGTAGAAGAATGGGGTTAGA+AGG + Chr4:63894612-63894631 MsG0480021754.01.T01:CDS 45.0%
GTAAATGCAGTAGACTCCGA+CGG + Chr4:63894321-63894340 MsG0480021754.01.T01:CDS 45.0%
TGAAGCTGGGCTTGAATATG+CGG + Chr4:63894803-63894822 MsG0480021754.01.T01:CDS 45.0%
TGCTGAGGTAGAGGAGATAT+TGG + Chr4:63894671-63894690 MsG0480021754.01.T01:CDS 45.0%
TGGTGAGGGATTATGAAGCT+GGG + Chr4:63894790-63894809 MsG0480021754.01.T01:CDS 45.0%
TTAGACCACCGCGATAATAG+CGG + Chr4:63894420-63894439 MsG0480021754.01.T01:CDS 45.0%
TTGGTGAGGGATTATGAAGC+TGG + Chr4:63894789-63894808 MsG0480021754.01.T01:CDS 45.0%
! AACAGCGTTGGATTTAGCGA+GGG + Chr4:63894548-63894567 MsG0480021754.01.T01:CDS 45.0%
!! CTAATGAGTGGATTAAGGGG+AGG + Chr4:63894751-63894770 MsG0480021754.01.T01:CDS 45.0%
!! GATAATGGGGTTTCTACGGT+TGG + Chr4:63894990-63895009 MsG0480021754.01.T01:CDS 45.0%
!! TTCTACGGTTGGTTTGAGTC+AGG + Chr4:63895001-63895020 MsG0480021754.01.T01:CDS 45.0%
!!! GGCTTCGAGGATTGTTTTGA+GGG - Chr4:63894286-63894305 None:intergenic 45.0%
!!! GGTGTGGTTAGGGTTTTAGA+AGG + Chr4:63894633-63894652 MsG0480021754.01.T01:CDS 45.0%
AATGAGATACTCCATGCCGG+TGG - Chr4:63894148-63894167 None:intergenic 50.0%
CCACCAGGGAGTTTCGTATT+CGG - Chr4:63894235-63894254 None:intergenic 50.0%
GAGAGGGAAAGGCGAGAATT+TGG + Chr4:63894698-63894717 MsG0480021754.01.T01:CDS 50.0%
GATTAAGGGGAGGTTTGTGG+CGG + Chr4:63894761-63894780 MsG0480021754.01.T01:CDS 50.0%
GCAGCTGGATATGTAAGACC+TGG + Chr4:63894465-63894484 MsG0480021754.01.T01:CDS 50.0%
GTCTTTCGCAATGAAGTCGG+CGG - Chr4:63894205-63894224 None:intergenic 50.0%
GTTAAGCTCTTAGCCGAAGC+CGG + Chr4:63894390-63894409 MsG0480021754.01.T01:CDS 50.0%
TCGGCTAAGAGCTTAACGCA+TGG - Chr4:63894387-63894406 None:intergenic 50.0%
TCTTTCGCAATGAAGTCGGC+GGG - Chr4:63894204-63894223 None:intergenic 50.0%
TTCTCTTCAGGCTCCCAAGT+AGG - Chr4:63894909-63894928 None:intergenic 50.0%
! GAACAGCGTTGGATTTAGCG+AGG + Chr4:63894547-63894566 MsG0480021754.01.T01:CDS 50.0%
! GGGGTTAGAAGGTGTGGTTA+GGG + Chr4:63894623-63894642 MsG0480021754.01.T01:CDS 50.0%
! GTGGATTAAGGGGAGGTTTG+TGG + Chr4:63894758-63894777 MsG0480021754.01.T01:CDS 50.0%
! TGGGGTTAGAAGGTGTGGTT+AGG + Chr4:63894622-63894641 MsG0480021754.01.T01:CDS 50.0%
!! ACGGTTGGTTTGAGTCAGGA+TGG + Chr4:63895005-63895024 MsG0480021754.01.T01:CDS 50.0%
!! CGGCTTCGAGGATTGTTTTG+AGG - Chr4:63894287-63894306 None:intergenic 50.0%
!! CGGTTGGTTTGAGTCAGGAT+GGG + Chr4:63895006-63895025 MsG0480021754.01.T01:CDS 50.0%
!! GTCTAAATTAGCGCCGGCTT+CGG - Chr4:63894406-63894425 None:intergenic 50.0%
!! GTGATAGTGGGGAGTTTGGT+GGG - Chr4:63894009-63894028 None:intergenic 50.0%
!! TTCGTCGGATTTTCTAGCGG+CGG - Chr4:63894259-63894278 None:intergenic 50.0%
!!! TTGTTGGTTTTGGGTTGCGG+CGG - Chr4:63894031-63894050 None:intergenic 50.0%
AAGACGGCCATGAACCATCC+TGG + Chr4:63894175-63894194 MsG0480021754.01.T01:CDS 55.0%
ACCGCACTTCTCTTTGTCGC+TGG + Chr4:63894348-63894367 MsG0480021754.01.T01:CDS 55.0%
AGACGGCCATGAACCATCCT+GGG + Chr4:63894176-63894195 MsG0480021754.01.T01:CDS 55.0%
AGCTGGGCTTGAATATGCGG+TGG + Chr4:63894806-63894825 MsG0480021754.01.T01:CDS 55.0%
CATGCCGGTGGAATCTTCCA+AGG - Chr4:63894136-63894155 None:intergenic 55.0%
CCGAATACGAAACTCCCTGG+TGG + Chr4:63894232-63894251 MsG0480021754.01.T01:CDS 55.0%
CCTGAAATCAGCGACGATCG+TGG + Chr4:63894522-63894541 MsG0480021754.01.T01:CDS 55.0%
CGATCGTGGAAGAACAGCGT+TGG + Chr4:63894536-63894555 MsG0480021754.01.T01:CDS 55.0%
CTTGGAAGATTCCACCGGCA+TGG + Chr4:63894134-63894153 MsG0480021754.01.T01:CDS 55.0%
CTTTCGCAATGAAGTCGGCG+GGG - Chr4:63894203-63894222 None:intergenic 55.0%
GCCAGCGACAAAGAGAAGTG+CGG - Chr4:63894352-63894371 None:intergenic 55.0%
GCGGTGGTCTAAATTAGCGC+CGG - Chr4:63894412-63894431 None:intergenic 55.0%
GTCGGAGAGTTGGGGATGAT+GGG + Chr4:63894844-63894863 MsG0480021754.01.T01:CDS 55.0%
TCGCCGAATACGAAACTCCC+TGG + Chr4:63894229-63894248 MsG0480021754.01.T01:CDS 55.0%
TGGGCTTGAATATGCGGTGG+CGG + Chr4:63894809-63894828 MsG0480021754.01.T01:CDS 55.0%
! CTTCTCTTTGTCGCTGGCCT+CGG + Chr4:63894354-63894373 MsG0480021754.01.T01:CDS 55.0%
! GAGAAGTGCGGTTCTACCGT+CGG - Chr4:63894340-63894359 None:intergenic 55.0%
! GAGGTTTGTGGCGGAGGATT+TGG + Chr4:63894770-63894789 MsG0480021754.01.T01:CDS 55.0%
!! AGTGAGGGATTGGTGGTGGT+GGG - Chr4:63893974-63893993 None:intergenic 55.0%
!! CCACGATCGTCGCTGATTTC+AGG - Chr4:63894525-63894544 None:intergenic 55.0%
!! GGAGTTTGGTGGGTTTGTGG+CGG - Chr4:63893999-63894018 None:intergenic 55.0%
!! GGTGATAGTGGGGAGTTTGG+TGG - Chr4:63894010-63894029 None:intergenic 55.0%
!! TGAATATGCGGTGGCGGAAG+CGG + Chr4:63894815-63894834 MsG0480021754.01.T01:CDS 55.0%
!! TGGGGAGTTTGGTGGGTTTG+TGG - Chr4:63894002-63894021 None:intergenic 55.0%
!! TGTGGCGGAGGATTTGGTGA+GGG + Chr4:63894776-63894795 MsG0480021754.01.T01:CDS 55.0%
!! TTGTGGCGGAGGATTTGGTG+AGG + Chr4:63894775-63894794 MsG0480021754.01.T01:CDS 55.0%
GACCACCGCGATAATAGCGG+TGG + Chr4:63894423-63894442 MsG0480021754.01.T01:CDS 60.0%
GACCACCGCTATTATCGCGG+TGG - Chr4:63894428-63894447 None:intergenic 60.0%
GGTCGGAGAGTTGGGGATGA+TGG + Chr4:63894843-63894862 MsG0480021754.01.T01:CDS 60.0%
TAAGGGGAGGTTTGTGGCGG+AGG + Chr4:63894764-63894783 MsG0480021754.01.T01:CDS 60.0%
TGGGTTGCGGCGGTGATAGT+GGG - Chr4:63894021-63894040 None:intergenic 60.0%
TGGTCTATCGGCGCTGCACA+TGG + Chr4:63894443-63894462 MsG0480021754.01.T01:CDS 60.0%
! CGGTGGTTGGTCGGAGAGTT+GGG + Chr4:63894835-63894854 MsG0480021754.01.T01:CDS 60.0%
! GGAGAGTGAGGGATTGGTGG+TGG - Chr4:63893978-63893997 None:intergenic 60.0%
! GGGTTTGTGGCGGAGAGTGA+GGG - Chr4:63893989-63894008 None:intergenic 60.0%
! GGTGGTTGGTCGGAGAGTTG+GGG + Chr4:63894836-63894855 MsG0480021754.01.T01:CDS 60.0%
! TGGGTTTGTGGCGGAGAGTG+AGG - Chr4:63893990-63894009 None:intergenic 60.0%
! TGTGGCGGAGAGTGAGGGAT+TGG - Chr4:63893984-63894003 None:intergenic 60.0%
! TTGGGTTGCGGCGGTGATAG+TGG - Chr4:63894022-63894041 None:intergenic 60.0%
! TTTCTAGCGGCGGTCCACCA+GGG - Chr4:63894249-63894268 None:intergenic 60.0%
!! CGCGGTAATCATCGGCTTCG+AGG - Chr4:63894299-63894318 None:intergenic 60.0%
!! GAGTGAGGGATTGGTGGTGG+TGG - Chr4:63893975-63893994 None:intergenic 60.0%
!! GGCGGTGATAGTGGGGAGTT+TGG - Chr4:63894013-63894032 None:intergenic 60.0%
!! TAACGCATGGCTCTGAGCCG+AGG - Chr4:63894374-63894393 None:intergenic 60.0%
!! TTTTCTAGCGGCGGTCCACC+AGG - Chr4:63894250-63894269 None:intergenic 60.0%
AATGAAGTCGGCGGGGACCC+AGG - Chr4:63894196-63894215 None:intergenic 65.0%
CGGGGACCCAGGATGGTTCA+TGG - Chr4:63894185-63894204 None:intergenic 65.0%
GGCGGAGAGTGAGGGATTGG+TGG - Chr4:63893981-63894000 None:intergenic 65.0%
TGGCGGAAGCGGTGGTTGGT+CGG + Chr4:63894826-63894845 MsG0480021754.01.T01:CDS 65.0%
! GCGGTGGTTGGTCGGAGAGT+TGG + Chr4:63894834-63894853 MsG0480021754.01.T01:CDS 65.0%
! GGGTTGCGGCGGTGATAGTG+GGG - Chr4:63894020-63894039 None:intergenic 65.0%
!! ATATGCGGTGGCGGAAGCGG+TGG + Chr4:63894818-63894837 MsG0480021754.01.T01:CDS 65.0%
AAGTCGGCGGGGACCCAGGA+TGG - Chr4:63894192-63894211 None:intergenic 70.0%
TCGGCGCTGCACATGGCAGC+TGG + Chr4:63894450-63894469 MsG0480021754.01.T01:CDS 70.0%
!! GCGGTGGCGGAAGCGGTGGT+TGG + Chr4:63894822-63894841 MsG0480021754.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 63893886 63895052 63893886 ID=MsG0480021754.01;Name=MsG0480021754.01
Chr4 mRNA 63893886 63895052 63893886 ID=MsG0480021754.01.T01;Parent=MsG0480021754.01;Name=MsG0480021754.01.T01;_AED=0.25;_eAED=0.25;_QI=0|-1|0|1|-1|1|1|0|388
Chr4 exon 63893886 63895052 63893886 ID=MsG0480021754.01.T01:exon:7029;Parent=MsG0480021754.01.T01
Chr4 CDS 63893886 63895052 63893886 ID=MsG0480021754.01.T01:cds;Parent=MsG0480021754.01.T01
Gene Sequence

>MsG0480021754.01.T01

ATGGAAGCTTTGTTCCTTACCAAACCAATTTCTCACTTCAAACCCAAACACTCTCTATCTCCCAAACACCCATTTCAATTTCTCTCCCACCACCACCAATCCCTCACTCTCCGCCACAAACCCACCAAACTCCCCACTATCACCGCCGCAACCCAAAACCAACAACAACAAGAAGAACAAACCACACCCAAAACCATTGAAGATGAAGAATCCTACGGGGAAGTCAAAAAAATCATCGGAAGCAAAGCCTTGGAAGATTCCACCGGCATGGAGTATCTCATTGAATGGAAAGACGGCCATGAACCATCCTGGGTCCCCGCCGACTTCATTGCGAAAGACGTCGTCGCCGAATACGAAACTCCCTGGTGGACCGCCGCTAGAAAATCCGACGAAAATGCCCTCAAAACAATCCTCGAAGCCGATGATTACCGCGACGTAAATGCAGTAGACTCCGACGGTAGAACCGCACTTCTCTTTGTCGCTGGCCTCGGCTCAGAGCCATGCGTTAAGCTCTTAGCCGAAGCCGGCGCTAATTTAGACCACCGCGATAATAGCGGTGGTCTATCGGCGCTGCACATGGCAGCTGGATATGTAAGACCTGGAGTAGCAAAATTGCTACTCGAGCTCGGCGCTGATCCTGAAATCAGCGACGATCGTGGAAGAACAGCGTTGGATTTAGCGAGGGAGTTATTAAAAGCGACACCAAAGGGTAACCCAATGCAATTCGGTAGAAGAATGGGGTTAGAAGGTGTGGTTAGGGTTTTAGAAGGTGCAGTGTTTGAATATGCTGAGGTAGAGGAGATATTGGAGAAGAGAGGGAAAGGCGAGAATTTGGAGTATTTGGTGAAATGGAAAGATGGAAGTGCTAATGAGTGGATTAAGGGGAGGTTTGTGGCGGAGGATTTGGTGAGGGATTATGAAGCTGGGCTTGAATATGCGGTGGCGGAAGCGGTGGTTGGTCGGAGAGTTGGGGATGATGGGAAGTATGAGTTTTTGGTGAAATGGATTGATTTGGATGAACCTACTTGGGAGCCTGAAGAGAATGTTGATTCTGAACTTGTTAAGGTGTTTGATTTGAGTAATAATCAAGCTCAACCTGGTAATGATAATGGGGTTTCTACGGTTGGTTTGAGTCAGGATGGGTCAAATATTATTAGTGCATCATAA

Protein sequence

>MsG0480021754.01.T01

MEALFLTKPISHFKPKHSLSPKHPFQFLSHHHQSLTLRHKPTKLPTITAATQNQQQQEEQTTPKTIEDEESYGEVKKIIGSKALEDSTGMEYLIEWKDGHEPSWVPADFIAKDVVAEYETPWWTAARKSDENALKTILEADDYRDVNAVDSDGRTALLFVAGLGSEPCVKLLAEAGANLDHRDNSGGLSALHMAAGYVRPGVAKLLLELGADPEISDDRGRTALDLARELLKATPKGNPMQFGRRMGLEGVVRVLEGAVFEYAEVEEILEKRGKGENLEYLVKWKDGSANEWIKGRFVAEDLVRDYEAGLEYAVAEAVVGRRVGDDGKYEFLVKWIDLDEPTWEPEENVDSELVKVFDLSNNQAQPGNDNGVSTVGLSQDGSNIISAS*