AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017509.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017509.01.T01 MTR_3g108040 66.355 214 28 4 12 205 103 292 1.17e-80 243
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017509.01.T01 AT5G11450 49.495 198 55 4 12 189 108 280 3.34e-54 176
MsG0380017509.01.T01 AT5G11450 49.495 198 55 4 12 189 126 298 4.10e-54 176

Find 71 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGAAGATAAGGTTGTTAT+TGG 0.169527 3:-97154825 MsG0380017508.01.T01:intron
ACAAAGATCCCTGGAGATTT+TGG 0.175536 3:+97158697 MsG0380017509.01.T01:CDS
TACTGAAACGGTTGTCTCTT+AGG 0.237992 3:+97158861 MsG0380017509.01.T01:three_prime_UTR
AGGAGCATTTGGTTTGGTTT+TGG 0.272796 3:-97154862 MsG0380017508.01.T01:intron
TCTTATCCTTCAAGTTTATA+AGG 0.274761 3:-97156483 None:intergenic
CAACCGTTTCAGTAGGGATT+TGG 0.275099 3:-97158852 None:intergenic
CACTCTTCAAAGAACATATA+TGG 0.278985 3:-97158783 None:intergenic
AAGAGGAATTTACCAGAAAA+AGG 0.297343 3:-97154997 MsG0380017508.01.T01:five_prime_UTR
TTGTCTTGCGTGGCTCTTGC+TGG 0.299408 3:+97155070 MsG0380017509.01.T01:intron
TTTCTACAGTTGAAGAAATC+AGG 0.308590 3:+97157697 MsG0380017509.01.T01:intron
TAGCGAAGTGTGAAACTAAC+TGG 0.383353 3:+97154740 MsG0380017509.01.T01:five_prime_UTR
GATAGGTGGGGTGATGGAAT+TGG 0.392388 3:+97154714 None:intergenic
TGAAGAAATCAGGAATTTAC+CGG 0.392581 3:+97157707 MsG0380017509.01.T01:CDS
CCAATAACAACCTTATCTTC+AGG 0.404699 3:+97154825 MsG0380017509.01.T01:five_prime_UTR
CTGAAGATAAGGTTGTTATT+GGG 0.405745 3:-97154824 MsG0380017508.01.T01:intron
GGATTGTTGGAAGGAGCATT+TGG 0.408319 3:-97154873 MsG0380017508.01.T01:intron
TGCAAACCTTATAAACTTGA+AGG 0.413975 3:+97156477 MsG0380017509.01.T01:CDS
AAGAATAAGAGCTGGATTGT+TGG 0.426768 3:-97154801 MsG0380017508.01.T01:intron
GTCATCATCATTCTATCAAA+GGG 0.433581 3:-97158890 None:intergenic
ACTGAAACGGTTGTCTCTTA+GGG 0.443343 3:+97158862 MsG0380017509.01.T01:three_prime_UTR
TGAAATTTAAATGGCTGCAT+AGG 0.446918 3:+97158990 MsG0380017509.01.T01:three_prime_UTR
GTTGGAAGGAGCATTTGGTT+TGG 0.448463 3:-97154868 MsG0380017508.01.T01:intron
GCAGCCGATGAATATCGTTC+TGG 0.459979 3:-97156012 None:intergenic
TGTCATCATCATTCTATCAA+AGG 0.465838 3:-97158891 None:intergenic
AATCTCCAGGGATCTTTGTA+TGG 0.474697 3:-97158693 None:intergenic
ACTTGAAGGATAAGAGCAAA+TGG 0.476008 3:+97156491 MsG0380017509.01.T01:CDS
AAGAGGGTAAAGATAAGAAT+AGG 0.477402 3:-97155147 None:intergenic
TTTCCAAATCCCTACTGAAA+CGG 0.480154 3:+97158849 MsG0380017509.01.T01:three_prime_UTR
GGATTACCCTCCTGAAGATA+AGG 0.481706 3:-97154835 MsG0380017508.01.T01:intron
TAATGTGATAGGTGGGGTGA+TGG 0.486009 3:+97154708 None:intergenic
TTTAGCTGACAAATCTTCAC+TGG 0.488647 3:+97156540 MsG0380017509.01.T01:CDS
GAAGTCAACAAGACCCCAAA+TGG 0.490550 3:+97155100 MsG0380017509.01.T01:five_prime_UTR
CACGTTTGCAATACTAAAGT+AGG 0.500531 3:-97157781 None:intergenic
TTTATAAGGTTTGCACTTGG+AGG 0.505460 3:-97156469 None:intergenic
TTCCTCCATACAAAGATCCC+TGG 0.524136 3:+97158688 MsG0380017509.01.T01:CDS
TATTCATGTAGTAACCTTGT+GGG 0.527204 3:+97158745 MsG0380017509.01.T01:CDS
TGCATCGAGAACTGAACTCT+CGG 0.532100 3:-97157277 None:intergenic
TTATAAGGTTTGCACTTGGA+GGG 0.533271 3:-97156468 None:intergenic
TTATTGGGAAGAATAAGAGC+TGG 0.537380 3:-97154809 MsG0380017508.01.T01:intron
AATAAGAGCTGGATTGTTGG+AGG 0.562276 3:-97154798 MsG0380017508.01.T01:intron
TACATGAATTTCACCCCACA+AGG 0.563427 3:-97158759 None:intergenic
TAAGAGACAACCGTTTCAGT+AGG 0.566133 3:-97158859 None:intergenic
AAGTGAATAATGTGATAGGT+GGG 0.566574 3:+97154701 None:intergenic
TTTATCATCGGATTGTTGGA+AGG 0.566618 3:-97154882 MsG0380017508.01.T01:five_prime_UTR
AAGAGACAACCGTTTCAGTA+GGG 0.567147 3:-97158858 None:intergenic
TAAATGGCTGCATAGGAATG+AGG 0.568271 3:+97158997 MsG0380017509.01.T01:three_prime_UTR
TCTTAAATACCTAGTCATAG+TGG 0.573279 3:+97158923 MsG0380017509.01.T01:three_prime_UTR
GTATTCATGTAGTAACCTTG+TGG 0.581692 3:+97158744 MsG0380017509.01.T01:CDS
ATGGACTGCAAAAGATGTTG+TGG 0.582234 3:+97156510 MsG0380017509.01.T01:CDS
AAAGTAGGAATAATTTGAGA+GGG 0.585128 3:-97157766 None:intergenic
CAATCTCATCATTTCCGTCA+CGG 0.585889 3:+97156353 MsG0380017509.01.T01:CDS
AAAGTGAATAATGTGATAGG+TGG 0.590208 3:+97154700 None:intergenic
ACTGAGGGTCGAAGCGCTGA+TGG 0.592389 3:-97158053 None:intergenic
AAACTAACTGGAGCTAGCAA+TGG 0.598377 3:+97154752 MsG0380017509.01.T01:five_prime_UTR
AAGTTTATAAGGTTTGCACT+TGG 0.598414 3:-97156472 None:intergenic
CTGTTGAAGCAACATAATGC+CGG 0.605398 3:-97157726 None:intergenic
TAAAGTAGGAATAATTTGAG+AGG 0.607437 3:-97157767 None:intergenic
CTCCAGGGATCTTTGTATGG+AGG 0.613390 3:-97158690 None:intergenic
AAAGCCAGAACGATATTCAT+CGG 0.615878 3:+97156008 MsG0380017509.01.T01:CDS
ATAACAACCTTATCTTCAGG+AGG 0.618318 3:+97154828 MsG0380017509.01.T01:five_prime_UTR
TTTAGAAGGGAAGCTCAAGA+GGG 0.625687 3:-97155163 None:intergenic
CTCGGCTGAGCGCTGAACTG+AGG 0.632575 3:-97157259 None:intergenic
GAGATTGAGGAATACCGTGA+CGG 0.648569 3:-97156367 None:intergenic
GCTTCAACAGCAGAAAGAGA+TGG 0.651152 3:+97157739 MsG0380017509.01.T01:CDS
TAATTAGAACCACTATGACT+AGG 0.657996 3:-97158932 None:intergenic
TAACAACCTTATCTTCAGGA+GGG 0.664496 3:+97154829 MsG0380017509.01.T01:five_prime_UTR
ATTCATGTAGTAACCTTGTG+GGG 0.677787 3:+97158746 MsG0380017509.01.T01:CDS
AGTGAATAATGTGATAGGTG+GGG 0.681797 3:+97154702 None:intergenic
CACGTTCAGACACAATACGC+AGG 0.686046 3:-97156317 None:intergenic
TTGTTAGAGATAGTGAAGTG+AGG 0.696186 3:-97154966 MsG0380017508.01.T01:five_prime_UTR
CTTCGACCCTCAGTCCACAG+TGG 0.711960 3:+97158062 MsG0380017509.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATAATAAATATTTTAT+TGG + Chr3:97157960-97157979 MsG0380017509.01.T01:intron 0.0%
!! AACTATAAATAAAGAAATAA+GGG - Chr3:97155698-97155717 None:intergenic 10.0%
!! AATATCAGAAATAAATTTAA+AGG - Chr3:97157217-97157236 None:intergenic 10.0%
!! TAAAATATCATAAAAAATAC+TGG + Chr3:97156762-97156781 MsG0380017509.01.T01:intron 10.0%
!! TATTTATAGTTGTTATAAAT+TGG + Chr3:97155707-97155726 MsG0380017509.01.T01:intron 10.0%
!! AAAAAATTATTAGAATGTCA+AGG - Chr3:97158599-97158618 None:intergenic 15.0%
!! AAAACTATAATTAAACTAGT+TGG + Chr3:97155895-97155914 MsG0380017509.01.T01:intron 15.0%
!! AAATATATGATTTAACATGT+TGG - Chr3:97156825-97156844 None:intergenic 15.0%
!! CAACTATAAATAAAGAAATA+AGG - Chr3:97155699-97155718 None:intergenic 15.0%
!! GAAAACGAAAATAAATAAAA+TGG - Chr3:97155233-97155252 None:intergenic 15.0%
!! TGAAAAACTTGAAATTTAAA+TGG + Chr3:97158981-97159000 MsG0380017509.01.T01:three_prime_UTR 15.0%
!! TGTTACAAATTACATATTAT+TGG + Chr3:97157491-97157510 MsG0380017509.01.T01:intron 15.0%
!!! ACTAATATGTAAATAGTTTT+AGG - Chr3:97157005-97157024 None:intergenic 15.0%
!!! TAATAATTTTTTATGCAGAT+GGG + Chr3:97158607-97158626 MsG0380017509.01.T01:intron 15.0%
!! AAAAATTGTTCATCTATCAA+TGG + Chr3:97158379-97158398 MsG0380017509.01.T01:intron 20.0%
!! AAAATTGTTCATCTATCAAT+GGG + Chr3:97158380-97158399 MsG0380017509.01.T01:intron 20.0%
!! AACTCTTTCCATATAATTAA+AGG + Chr3:97155974-97155993 MsG0380017509.01.T01:intron 20.0%
!! AAGATCCATAGAAAAAAATA+AGG + Chr3:97157935-97157954 MsG0380017509.01.T01:intron 20.0%
!! AATTCGTTAATTTCAAATGA+AGG - Chr3:97158551-97158570 None:intergenic 20.0%
!! ACTAGATATTATCTCTAATT+GGG + Chr3:97156712-97156731 MsG0380017509.01.T01:intron 20.0%
!! ACTCTTTCCATATAATTAAA+GGG + Chr3:97155975-97155994 MsG0380017509.01.T01:intron 20.0%
!! ATAATTTGAAGATGTGTTAA+TGG - Chr3:97155825-97155844 None:intergenic 20.0%
!! ATGTTATTGATATTGTTGAA+TGG + Chr3:97155770-97155789 MsG0380017509.01.T01:intron 20.0%
!! GATTTAAAGATTAATGATGT+TGG + Chr3:97155459-97155478 MsG0380017509.01.T01:intron 20.0%
!! TGTTATTGATATTGTTGAAT+GGG + Chr3:97155771-97155790 MsG0380017509.01.T01:intron 20.0%
!!! AACAAAAAATCACATGTTTT+GGG - Chr3:97157438-97157457 None:intergenic 20.0%
!!! AATAATTTTTTATGCAGATG+GGG + Chr3:97158608-97158627 MsG0380017509.01.T01:intron 20.0%
!!! AGAAAAATCTCTTTTATCAT+CGG - Chr3:97154897-97154916 MsG0380017508.01.T01:five_prime_UTR 20.0%
!!! CTAAAAATTTTGTCTTCAAA+TGG + Chr3:97155181-97155200 MsG0380017509.01.T01:CDS 20.0%
!!! CTAATAATTTTTTATGCAGA+TGG + Chr3:97158606-97158625 MsG0380017509.01.T01:intron 20.0%
!!! CTAGTTTAATTATAGTTTTG+TGG - Chr3:97155894-97155913 None:intergenic 20.0%
!!! TAACAAAAAATCACATGTTT+TGG - Chr3:97157439-97157458 None:intergenic 20.0%
!!! TAGAAGTTTTGATGTAATAT+TGG + Chr3:97156952-97156971 MsG0380017509.01.T01:intron 20.0%
!!! TATAAGCTCTTTTAAAAGAT+AGG + Chr3:97156158-97156177 MsG0380017509.01.T01:intron 20.0%
!!! TCTTTTTTGGAAAAGAATAA+AGG + Chr3:97158354-97158373 MsG0380017509.01.T01:intron 20.0%
!!! TGAAGACAAAATTTTTAGAA+GGG - Chr3:97155179-97155198 None:intergenic 20.0%
!!! TTGAAGACAAAATTTTTAGA+AGG - Chr3:97155180-97155199 None:intergenic 20.0%
!!! TTGAAGAGTGAAATTTTTAA+TGG + Chr3:97158796-97158815 MsG0380017509.01.T01:three_prime_UTR 20.0%
!!! TTTAGCCTTATTTTTTTCTA+TGG - Chr3:97157943-97157962 None:intergenic 20.0%
! AAAGTAGGAATAATTTGAGA+GGG - Chr3:97157769-97157788 None:intergenic 25.0%
! AATATTGGATACAAGAATGA+AGG + Chr3:97156967-97156986 MsG0380017509.01.T01:intron 25.0%
! ACGAAAATAAATAAAATGGC+AGG - Chr3:97155229-97155248 None:intergenic 25.0%
! AGATAATATCTAGTGAGTAA+TGG - Chr3:97156706-97156725 None:intergenic 25.0%
! ATATTGGATACAAGAATGAA+GGG + Chr3:97156968-97156987 MsG0380017509.01.T01:intron 25.0%
! CACTAGATATTATCTCTAAT+TGG + Chr3:97156711-97156730 MsG0380017509.01.T01:intron 25.0%
! CTGGAAACAATTGAAAAAAA+AGG + Chr3:97155630-97155649 MsG0380017509.01.T01:intron 25.0%
! GATAATATCTAGTGAGTAAT+GGG - Chr3:97156705-97156724 None:intergenic 25.0%
! GATTCTACCCTTTAATTATA+TGG - Chr3:97155985-97156004 None:intergenic 25.0%
! TAAAGTAGGAATAATTTGAG+AGG - Chr3:97157770-97157789 None:intergenic 25.0%
! TTAAAGATTAATGATGTTGG+TGG + Chr3:97155462-97155481 MsG0380017509.01.T01:intron 25.0%
! TTAATAATGTGCTTGATTTC+AGG + Chr3:97158019-97158038 MsG0380017509.01.T01:intron 25.0%
! TTCTCAGTAGAGAATTTATA+TGG - Chr3:97158323-97158342 None:intergenic 25.0%
!! ATGATTTGAAATAGTATGTC+AGG - Chr3:97158498-97158517 None:intergenic 25.0%
!! GATATTTTATATCGCTTATC+TGG - Chr3:97156751-97156770 None:intergenic 25.0%
!! TAAGTTGAATTGACATAGTT+GGG + Chr3:97158293-97158312 MsG0380017509.01.T01:intron 25.0%
!! TAATGAACTTCTTTTCTCAT+TGG - Chr3:97155747-97155766 None:intergenic 25.0%
!! TCTTATCCTTCAAGTTTATA+AGG - Chr3:97156486-97156505 None:intergenic 25.0%
!! TTTTTCCCATTAATTCAGAT+AGG + Chr3:97156445-97156464 MsG0380017509.01.T01:intron 25.0%
!!! AAGTTTTCATTGATTGTTGT+AGG + Chr3:97155946-97155965 MsG0380017509.01.T01:intron 25.0%
!!! CCTTTGAACAATATTTTGAT+GGG - Chr3:97158524-97158543 None:intergenic 25.0%
!!! GAAAATGATAAAGCATTGAA+TGG - Chr3:97156419-97156438 None:intergenic 25.0%
!!! TCCTTTGAACAATATTTTGA+TGG - Chr3:97158525-97158544 None:intergenic 25.0%
!!! TGGTGCATTTTCTTTTTTTA+AGG + Chr3:97157627-97157646 MsG0380017509.01.T01:intron 25.0%
!!! TTAAGTTGAATTGACATAGT+TGG + Chr3:97158292-97158311 MsG0380017509.01.T01:intron 25.0%
!!! TTCTTTTTTTAAGGAAGTTG+TGG + Chr3:97157636-97157655 MsG0380017509.01.T01:intron 25.0%
!!! TTTCTGTTATAGCTTTTTCT+AGG - Chr3:97155317-97155336 None:intergenic 25.0%
AAAAAAGAAAATGCACCAAG+AGG - Chr3:97157625-97157644 None:intergenic 30.0%
AACAATCAATGAAAACTTGC+AGG - Chr3:97155944-97155963 None:intergenic 30.0%
AAGAGGAATTTACCAGAAAA+AGG - Chr3:97155000-97155019 MsG0380017508.01.T01:five_prime_UTR 30.0%
AAGAGGGTAAAGATAAGAAT+AGG - Chr3:97155150-97155169 None:intergenic 30.0%
AAGTTTATAAGGTTTGCACT+TGG - Chr3:97156475-97156494 None:intergenic 30.0%
ACAAAAAACTTACGAGAAAG+TGG - Chr3:97156039-97156058 None:intergenic 30.0%
ACCATTAGAAACATTGTTCT+CGG - Chr3:97157075-97157094 None:intergenic 30.0%
AGCAAGAGTAAATAATGCTT+TGG + Chr3:97155846-97155865 MsG0380017509.01.T01:intron 30.0%
ATAAATAAAATGGCAGGCAA+AGG - Chr3:97155223-97155242 None:intergenic 30.0%
ATACTTGTTCCAGAGATAAA+AGG + Chr3:97157911-97157930 MsG0380017509.01.T01:intron 30.0%
ATCAACTATAGTTAACCATG+TGG - Chr3:97156904-97156923 None:intergenic 30.0%
ATCCAAAAAAGAAGCCATTT+GGG - Chr3:97155117-97155136 None:intergenic 30.0%
CACTCTTCAAAGAACATATA+TGG - Chr3:97158786-97158805 None:intergenic 30.0%
CCCATCAAAATATTGTTCAA+AGG + Chr3:97158521-97158540 MsG0380017509.01.T01:intron 30.0%
CCTAAAGAATACAACTTCAA+AGG - Chr3:97157132-97157151 None:intergenic 30.0%
GAGCAATTTAATCCAGAAAA+AGG - Chr3:97156271-97156290 None:intergenic 30.0%
GAGTATTCATAATACCAGTA+AGG - Chr3:97157570-97157589 None:intergenic 30.0%
GCAATCATACAGTATCATTA+TGG - Chr3:97156237-97156256 None:intergenic 30.0%
GGAATACTTACCATTGAATT+AGG - Chr3:97157604-97157623 None:intergenic 30.0%
GTCATCATCATTCTATCAAA+GGG - Chr3:97158893-97158912 None:intergenic 30.0%
GTTACTCATGCTATTCTTAT+TGG + Chr3:97156569-97156588 MsG0380017509.01.T01:intron 30.0%
TAATTAGAACCACTATGACT+AGG - Chr3:97158935-97158954 None:intergenic 30.0%
TATTCATGTAGTAACCTTGT+GGG + Chr3:97158745-97158764 MsG0380017509.01.T01:CDS 30.0%
TCAACTATAGTTAACCATGT+GGG - Chr3:97156903-97156922 None:intergenic 30.0%
TCAATTGTTTCCAGTTTAAG+CGG - Chr3:97155624-97155643 None:intergenic 30.0%
TCTTAAATACCTAGTCATAG+TGG + Chr3:97158923-97158942 MsG0380017509.01.T01:three_prime_UTR 30.0%
TGAAATTTAAATGGCTGCAT+AGG + Chr3:97158990-97159009 MsG0380017509.01.T01:three_prime_UTR 30.0%
TGAAGAAATCAGGAATTTAC+CGG + Chr3:97157707-97157726 MsG0380017509.01.T01:CDS 30.0%
TGCAAACCTTATAAACTTGA+AGG + Chr3:97156477-97156496 MsG0380017509.01.T01:CDS 30.0%
TGTCATCATCATTCTATCAA+AGG - Chr3:97158894-97158913 None:intergenic 30.0%
TTCGTAATCACCTAATTCAA+TGG + Chr3:97157591-97157610 MsG0380017509.01.T01:intron 30.0%
TTTCAAGCAATATTATGCAG+AGG - Chr3:97157845-97157864 None:intergenic 30.0%
TTTCAGTAGAAAATGAGACT+TGG - Chr3:97158461-97158480 None:intergenic 30.0%
TTTCTACAGTTGAAGAAATC+AGG + Chr3:97157697-97157716 MsG0380017509.01.T01:intron 30.0%
! CTGAAGATAAGGTTGTTATT+GGG - Chr3:97154827-97154846 MsG0380017508.01.T01:intron 30.0%
! CTTTGTATGTTTCCTTTTTC+TGG + Chr3:97156256-97156275 MsG0380017509.01.T01:intron 30.0%
! TGGTGTATGTGATTTTACTT+TGG + Chr3:97157656-97157675 MsG0380017509.01.T01:intron 30.0%
! TGTGTTAATGGCTAGTTATA+TGG - Chr3:97155813-97155832 None:intergenic 30.0%
! TTCTTCTTCTTCTTCTAGAA+GGG + Chr3:97154924-97154943 MsG0380017509.01.T01:five_prime_UTR 30.0%
!! CCTTTGAAGTTGTATTCTTT+AGG + Chr3:97157129-97157148 MsG0380017509.01.T01:intron 30.0%
!!! ATTTGGTTTGGTTTTGGTTA+AGG - Chr3:97154859-97154878 MsG0380017508.01.T01:intron 30.0%
AAAGCCAGAACGATATTCAT+CGG + Chr3:97156008-97156027 MsG0380017509.01.T01:CDS 35.0%
AAGAATAAGAGCTGGATTGT+TGG - Chr3:97154804-97154823 MsG0380017508.01.T01:intron 35.0%
ACAAGTATGACTCTGATTGA+AGG - Chr3:97157899-97157918 None:intergenic 35.0%
ACTTGAAGAACAGTAGCTAT+CGG - Chr3:97156649-97156668 None:intergenic 35.0%
ACTTGAAGGATAAGAGCAAA+TGG + Chr3:97156491-97156510 MsG0380017509.01.T01:CDS 35.0%
AGCAGCAAATGAAGAAAAAG+AGG - Chr3:97155017-97155036 None:intergenic 35.0%
AGGCTTGTAGATTATGTAGT+AGG + Chr3:97155379-97155398 MsG0380017509.01.T01:intron 35.0%
ATAACAACCTTATCTTCAGG+AGG + Chr3:97154828-97154847 MsG0380017509.01.T01:five_prime_UTR 35.0%
ATTCATGTAGTAACCTTGTG+GGG + Chr3:97158746-97158765 MsG0380017509.01.T01:CDS 35.0%
CAACTATAGTTAACCATGTG+GGG - Chr3:97156902-97156921 None:intergenic 35.0%
CAAGTATGACTCTGATTGAA+GGG - Chr3:97157898-97157917 None:intergenic 35.0%
CAATTGTTTCCAGTTTAAGC+GGG - Chr3:97155623-97155642 None:intergenic 35.0%
CACGTTTGCAATACTAAAGT+AGG - Chr3:97157784-97157803 None:intergenic 35.0%
CATCCAAAAAAGAAGCCATT+TGG - Chr3:97155118-97155137 None:intergenic 35.0%
CCAATAACAACCTTATCTTC+AGG + Chr3:97154825-97154844 MsG0380017509.01.T01:five_prime_UTR 35.0%
CCTGAAGATAAGGTTGTTAT+TGG - Chr3:97154828-97154847 MsG0380017508.01.T01:intron 35.0%
CTTCTTCTTCTTCTTCTAGA+AGG + Chr3:97154923-97154942 MsG0380017509.01.T01:five_prime_UTR 35.0%
GTATTCATGTAGTAACCTTG+TGG + Chr3:97158744-97158763 MsG0380017509.01.T01:CDS 35.0%
TAACAACCTTATCTTCAGGA+GGG + Chr3:97154829-97154848 MsG0380017509.01.T01:five_prime_UTR 35.0%
TAGTAGGAGAGTAGATTAGA+TGG + Chr3:97155395-97155414 MsG0380017509.01.T01:intron 35.0%
TATTGCTTGAAAGCTCTTGT+TGG + Chr3:97157853-97157872 MsG0380017509.01.T01:intron 35.0%
TCAATGGTAAGTATTCCTCT+TGG + Chr3:97157607-97157626 MsG0380017509.01.T01:intron 35.0%
TCCAAAAAAGAAGCCATTTG+GGG - Chr3:97155116-97155135 None:intergenic 35.0%
TCTACATGAAAGTGGAAAAG+AGG - Chr3:97155349-97155368 None:intergenic 35.0%
TGAAGTTGTATTCTTTAGGC+AGG + Chr3:97157133-97157152 MsG0380017509.01.T01:intron 35.0%
TTATAAGGTTTGCACTTGGA+GGG - Chr3:97156471-97156490 None:intergenic 35.0%
TTATTGGGAAGAATAAGAGC+TGG - Chr3:97154812-97154831 MsG0380017508.01.T01:intron 35.0%
TTGACACCCAAAAGCTAAAA+AGG - Chr3:97157032-97157051 None:intergenic 35.0%
TTGTATTCTTTAGGCAGGAT+TGG + Chr3:97157138-97157157 MsG0380017509.01.T01:intron 35.0%
TTGTTAGAGATAGTGAAGTG+AGG - Chr3:97154969-97154988 MsG0380017508.01.T01:five_prime_UTR 35.0%
TTTAGCTGACAAATCTTCAC+TGG + Chr3:97156540-97156559 MsG0380017509.01.T01:CDS 35.0%
TTTATAAGGTTTGCACTTGG+AGG - Chr3:97156472-97156491 None:intergenic 35.0%
TTTATCATCGGATTGTTGGA+AGG - Chr3:97154885-97154904 MsG0380017508.01.T01:five_prime_UTR 35.0%
TTTCCAAATCCCTACTGAAA+CGG + Chr3:97158849-97158868 MsG0380017509.01.T01:three_prime_UTR 35.0%
TTTGAGCACTTGTATATGCA+AGG + Chr3:97157098-97157117 MsG0380017509.01.T01:intron 35.0%
! ATGCAACAAGTTTGAGATTG+AGG - Chr3:97156383-97156402 None:intergenic 35.0%
! CAAGTCTTATCCCATTAAGT+TGG - Chr3:97155530-97155549 None:intergenic 35.0%
! CTCTTTTATCATCGGATTGT+TGG - Chr3:97154889-97154908 MsG0380017508.01.T01:five_prime_UTR 35.0%
! TATCTCTAATTGGGAAGCAT+AGG + Chr3:97156721-97156740 MsG0380017509.01.T01:intron 35.0%
! TGGATCTTTCCTTTTATCTC+TGG - Chr3:97157923-97157942 None:intergenic 35.0%
!! CAATGGTTTTACACTCTCTA+TGG + Chr3:97154769-97154788 MsG0380017509.01.T01:five_prime_UTR 35.0%
!! TCTTATCCCATTAAGTTGGT+CGG - Chr3:97155526-97155545 None:intergenic 35.0%
!!! AACATGTGACGGTTCTTTTT+TGG + Chr3:97158341-97158360 MsG0380017509.01.T01:intron 35.0%
!!! AGTCAAGCCTTTTTAGCTTT+TGG + Chr3:97157022-97157041 MsG0380017509.01.T01:intron 35.0%
!!! CTCACAGTCTTTTCAAGTAA+AGG - Chr3:97158634-97158653 None:intergenic 35.0%
!!! GTCAAGCCTTTTTAGCTTTT+GGG + Chr3:97157023-97157042 MsG0380017509.01.T01:intron 35.0%
!!! GTTTTTTGTCTTCCTTTGCA+AGG + Chr3:97156050-97156069 MsG0380017509.01.T01:intron 35.0%
AAAACTTGCAGGCAACAAGA+GGG - Chr3:97155933-97155952 None:intergenic 40.0%
AAACTAACTGGAGCTAGCAA+TGG + Chr3:97154752-97154771 MsG0380017509.01.T01:five_prime_UTR 40.0%
AAGAGACAACCGTTTCAGTA+GGG - Chr3:97158861-97158880 None:intergenic 40.0%
AATAAGAGCTGGATTGTTGG+AGG - Chr3:97154801-97154820 MsG0380017508.01.T01:intron 40.0%
AATGTAGCCGACCAACTTAA+TGG + Chr3:97155516-97155535 MsG0380017509.01.T01:intron 40.0%
ACAGACCAGAGAGTTAAGAA+TGG + Chr3:97156874-97156893 MsG0380017509.01.T01:intron 40.0%
ACCTTTGTGACGTAAACAGT+TGG - Chr3:97157167-97157186 None:intergenic 40.0%
ACTGAAACGGTTGTCTCTTA+GGG + Chr3:97158862-97158881 MsG0380017509.01.T01:three_prime_UTR 40.0%
AGTAAACTCTTGCCTTGCAA+AGG - Chr3:97156065-97156084 None:intergenic 40.0%
ATAATGCTTTGGCCATAGAG+TGG + Chr3:97155857-97155876 MsG0380017509.01.T01:intron 40.0%
ATGTAGCCGACCAACTTAAT+GGG + Chr3:97155517-97155536 MsG0380017509.01.T01:intron 40.0%
CAATCTCATCATTTCCGTCA+CGG + Chr3:97156353-97156372 MsG0380017509.01.T01:CDS 40.0%
CACTTTCATGTAGAGAGAGA+GGG + Chr3:97155355-97155374 MsG0380017509.01.T01:intron 40.0%
CTGTTGAAGCAACATAATGC+CGG - Chr3:97157729-97157748 None:intergenic 40.0%
CTTATTGTCTCCTCACAGAT+TGG + Chr3:97157537-97157556 MsG0380017509.01.T01:intron 40.0%
CTTGAAGAACAGTAGCTATC+GGG - Chr3:97156648-97156667 None:intergenic 40.0%
GAGGGCCTATCTGAATTAAT+GGG - Chr3:97156453-97156472 None:intergenic 40.0%
GCAAAGTCAGTCTCAATTGT+AGG - Chr3:97155041-97155060 None:intergenic 40.0%
GGATTTACACTACAGATCAC+AGG - Chr3:97157196-97157215 None:intergenic 40.0%
GGCAAGAGAGAAAACAAAAC+AGG - Chr3:97155570-97155589 None:intergenic 40.0%
TAAGAGACAACCGTTTCAGT+AGG - Chr3:97158862-97158881 None:intergenic 40.0%
TAATGCTTTGGCCATAGAGT+GGG + Chr3:97155858-97155877 MsG0380017509.01.T01:intron 40.0%
TACATGAATTTCACCCCACA+AGG - Chr3:97158762-97158781 None:intergenic 40.0%
TACTGAAACGGTTGTCTCTT+AGG + Chr3:97158861-97158880 MsG0380017509.01.T01:three_prime_UTR 40.0%
TACTTTGGACTTGTGACTGA+TGG + Chr3:97157671-97157690 MsG0380017509.01.T01:intron 40.0%
TAGCGAAGTGTGAAACTAAC+TGG + Chr3:97154740-97154759 MsG0380017509.01.T01:five_prime_UTR 40.0%
TAGGAGAGTAGATTAGATGG+AGG + Chr3:97155398-97155417 MsG0380017509.01.T01:intron 40.0%
TCCAACTGTTTACGTCACAA+AGG + Chr3:97157163-97157182 MsG0380017509.01.T01:intron 40.0%
TCTCTACTGAGAACATGTGA+CGG + Chr3:97158330-97158349 MsG0380017509.01.T01:intron 40.0%
TTTAGAAGGGAAGCTCAAGA+GGG - Chr3:97155166-97155185 None:intergenic 40.0%
TTTCTCTCTTGCCATCCAAA+AGG + Chr3:97155577-97155596 MsG0380017509.01.T01:intron 40.0%
! ACAACATGCGTTCCTTTTTC+TGG + Chr3:97154985-97155004 MsG0380017509.01.T01:five_prime_UTR 40.0%
! ATGGACTGCAAAAGATGTTG+TGG + Chr3:97156510-97156529 MsG0380017509.01.T01:CDS 40.0%
! GCCGAGAACAATGTTTCTAA+TGG + Chr3:97157071-97157090 MsG0380017509.01.T01:intron 40.0%
!! AGAAGGGATTTTGTGCTGTT+AGG + Chr3:97154940-97154959 MsG0380017509.01.T01:five_prime_UTR 40.0%
!! TTTTAGAAGGGAAGCTCAAG+AGG - Chr3:97155167-97155186 None:intergenic 40.0%
!!! ACCCCAAATGGCTTCTTTTT+TGG + Chr3:97155112-97155131 MsG0380017509.01.T01:five_prime_UTR 40.0%
!!! AGGAGCATTTGGTTTGGTTT+TGG - Chr3:97154865-97154884 MsG0380017508.01.T01:intron 40.0%
!!! AGGGTACTTTTTTTCCACTG+TGG - Chr3:97158079-97158098 None:intergenic 40.0%
!!! TTTTTTCCACTGTGGACTGA+GGG - Chr3:97158071-97158090 None:intergenic 40.0%
!!! TTTTTTTCCACTGTGGACTG+AGG - Chr3:97158072-97158091 None:intergenic 40.0%
AAACTTGCAGGCAACAAGAG+GGG - Chr3:97155932-97155951 None:intergenic 45.0%
AGAGAAGAGAGAGAGAGAGA+GGG - Chr3:97158098-97158117 None:intergenic 45.0%
AGCTATGACCAGTTGATCAG+TGG - Chr3:97158270-97158289 None:intergenic 45.0%
ATTGTCTCCTCACAGATTGG+AGG + Chr3:97157540-97157559 MsG0380017509.01.T01:intron 45.0%
CAACCGTTTCAGTAGGGATT+TGG - Chr3:97158855-97158874 None:intergenic 45.0%
CCACTTTCATGTAGAGAGAG+AGG + Chr3:97155354-97155373 MsG0380017509.01.T01:intron 45.0%
CCTCTCTCTCTACATGAAAG+TGG - Chr3:97155357-97155376 None:intergenic 45.0%
CTATTCTGTCTTGTCTTGCG+TGG + Chr3:97155060-97155079 MsG0380017509.01.T01:intron 45.0%
CTCTCTCTCTCTCTCTCATA+TGG + Chr3:97158152-97158171 MsG0380017509.01.T01:intron 45.0%
GAAAACTTGCAGGCAACAAG+AGG - Chr3:97155934-97155953 None:intergenic 45.0%
GAAGTCAACAAGACCCCAAA+TGG + Chr3:97155100-97155119 MsG0380017509.01.T01:five_prime_UTR 45.0%
GAGATTGAGGAATACCGTGA+CGG - Chr3:97156370-97156389 None:intergenic 45.0%
GCTTCAACAGCAGAAAGAGA+TGG + Chr3:97157739-97157758 MsG0380017509.01.T01:CDS 45.0%
GGAGGGCCTATCTGAATTAA+TGG - Chr3:97156454-97156473 None:intergenic 45.0%
GGATTACCCTCCTGAAGATA+AGG - Chr3:97154838-97154857 MsG0380017508.01.T01:intron 45.0%
TATGACCAGTTGATCAGTGG+CGG - Chr3:97158267-97158286 None:intergenic 45.0%
TGACTCTGATTGAAGGGAAG+AGG - Chr3:97157892-97157911 None:intergenic 45.0%
TGCATCGAGAACTGAACTCT+CGG - Chr3:97157280-97157299 None:intergenic 45.0%
TTCATGTAGAGAGAGAGGGT+AGG + Chr3:97155359-97155378 MsG0380017509.01.T01:intron 45.0%
TTCCTCCATACAAAGATCCC+TGG + Chr3:97158688-97158707 MsG0380017509.01.T01:CDS 45.0%
! AGTAGCTATCGGGTATTGCT+CGG - Chr3:97156638-97156657 None:intergenic 45.0%
!! AGGGATTTTGTGCTGTTAGG+AGG + Chr3:97154943-97154962 MsG0380017509.01.T01:five_prime_UTR 45.0%
!! GGATTGTTGGAAGGAGCATT+TGG - Chr3:97154876-97154895 MsG0380017508.01.T01:five_prime_UTR 45.0%
!! GTTGGAAGGAGCATTTGGTT+TGG - Chr3:97154871-97154890 MsG0380017508.01.T01:intron 45.0%
AGAGAGAGAGAGAGAGAGAG+AGG - Chr3:97158146-97158165 None:intergenic 50.0%
AGATTGGAGGCGAACCTTAC+TGG + Chr3:97157553-97157572 MsG0380017509.01.T01:intron 50.0%
CACGTTCAGACACAATACGC+AGG - Chr3:97156320-97156339 None:intergenic 50.0%
CTCCAGGGATCTTTGTATGG+AGG - Chr3:97158693-97158712 None:intergenic 50.0%
GAGAGAAGAGAGAGAGAGAG+AGG - Chr3:97158099-97158118 None:intergenic 50.0%
GCACTAGTGATCCCACTCTA+TGG - Chr3:97155872-97155891 None:intergenic 50.0%
GCAGCCGATGAATATCGTTC+TGG - Chr3:97156015-97156034 None:intergenic 50.0%
GGGCACCATTCTTAACTCTC+TGG - Chr3:97156882-97156901 None:intergenic 50.0%
GTTAAGAATGGTGCCCCACA+TGG + Chr3:97156886-97156905 MsG0380017509.01.T01:intron 50.0%
TACATGCTCACGTGTCTGTG+TGG - Chr3:97157348-97157367 None:intergenic 50.0%
TTTCTCCGCCACTGATCAAC+TGG + Chr3:97158259-97158278 MsG0380017509.01.T01:intron 50.0%
! GTAGCTATCGGGTATTGCTC+GGG - Chr3:97156637-97156656 None:intergenic 50.0%
!! AGCTTGTTGCCCGCTTAAAC+TGG + Chr3:97155611-97155630 MsG0380017509.01.T01:intron 50.0%
AGGTTCGCCTCCAATCTGTG+AGG - Chr3:97157550-97157569 None:intergenic 55.0%
GAGAGAGAGAGAGGAGAGAG+AGG - Chr3:97158139-97158158 None:intergenic 55.0%
GCTGAACTGAGGTAACTCGC+TGG - Chr3:97157251-97157270 None:intergenic 55.0%
TTGCCATCCAAAAGGCCCAG+CGG + Chr3:97155585-97155604 MsG0380017509.01.T01:intron 55.0%
TTGTCTTGCGTGGCTCTTGC+TGG + Chr3:97155070-97155089 MsG0380017509.01.T01:intron 55.0%
! GATCAGTGGCGGAGAAATGC+TGG - Chr3:97158256-97158275 None:intergenic 55.0%
CTTCGACCCTCAGTCCACAG+TGG + Chr3:97158062-97158081 MsG0380017509.01.T01:CDS 60.0%
!! ACTGAGGGTCGAAGCGCTGA+TGG - Chr3:97158056-97158075 None:intergenic 60.0%
GCAGGCGCGCATTAGCTGCA+AGG - Chr3:97156302-97156321 None:intergenic 65.0%
!! CTCGGCTGAGCGCTGAACTG+AGG - Chr3:97157262-97157281 None:intergenic 65.0%
GGGCAACAAGCTGCGCCGCT+GGG - Chr3:97155603-97155622 None:intergenic 70.0%
! AGCTGCGCCGCTGGGCCTTT+TGG - Chr3:97155595-97155614 None:intergenic 70.0%
! GCGCCGCTGGGCCTTTTGGA+TGG - Chr3:97155591-97155610 None:intergenic 70.0%
CGGGCAACAAGCTGCGCCGC+TGG - Chr3:97155604-97155623 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 97154715 97159016 97154715 ID=MsG0380017509.01;Name=MsG0380017509.01
Chr3 mRNA 97154715 97159016 97154715 ID=MsG0380017509.01.T01;Parent=MsG0380017509.01;Name=MsG0380017509.01.T01;_AED=0.48;_eAED=0.48;_QI=347|0.75|0.88|1|0.37|0.22|9|245|222
Chr3 exon 97154715 97155006 97154715 ID=MsG0380017509.01.T01:exon:6110;Parent=MsG0380017509.01.T01
Chr3 exon 97155080 97155202 97155080 ID=MsG0380017509.01.T01:exon:6111;Parent=MsG0380017509.01.T01
Chr3 exon 97155996 97156045 97155996 ID=MsG0380017509.01.T01:exon:6112;Parent=MsG0380017509.01.T01
Chr3 exon 97156307 97156374 97156307 ID=MsG0380017509.01.T01:exon:6113;Parent=MsG0380017509.01.T01
Chr3 exon 97156463 97156561 97156463 ID=MsG0380017509.01.T01:exon:6114;Parent=MsG0380017509.01.T01
Chr3 exon 97157252 97157311 97157252 ID=MsG0380017509.01.T01:exon:6115;Parent=MsG0380017509.01.T01
Chr3 exon 97157706 97157831 97157706 ID=MsG0380017509.01.T01:exon:6116;Parent=MsG0380017509.01.T01
Chr3 exon 97158041 97158091 97158041 ID=MsG0380017509.01.T01:exon:6117;Parent=MsG0380017509.01.T01
Chr3 exon 97158625 97159016 97158625 ID=MsG0380017509.01.T01:exon:6118;Parent=MsG0380017509.01.T01
Chr3 five_prime_UTR 97154715 97155006 97154715 ID=MsG0380017509.01.T01:five_prime_utr;Parent=MsG0380017509.01.T01
Chr3 five_prime_UTR 97155080 97155134 97155080 ID=MsG0380017509.01.T01:five_prime_utr;Parent=MsG0380017509.01.T01
Chr3 CDS 97155135 97155202 97155135 ID=MsG0380017509.01.T01:cds;Parent=MsG0380017509.01.T01
Chr3 CDS 97155996 97156045 97155996 ID=MsG0380017509.01.T01:cds;Parent=MsG0380017509.01.T01
Chr3 CDS 97156307 97156374 97156307 ID=MsG0380017509.01.T01:cds;Parent=MsG0380017509.01.T01
Chr3 CDS 97156463 97156561 97156463 ID=MsG0380017509.01.T01:cds;Parent=MsG0380017509.01.T01
Chr3 CDS 97157252 97157311 97157252 ID=MsG0380017509.01.T01:cds;Parent=MsG0380017509.01.T01
Chr3 CDS 97157706 97157831 97157706 ID=MsG0380017509.01.T01:cds;Parent=MsG0380017509.01.T01
Chr3 CDS 97158041 97158091 97158041 ID=MsG0380017509.01.T01:cds;Parent=MsG0380017509.01.T01
Chr3 CDS 97158625 97158771 97158625 ID=MsG0380017509.01.T01:cds;Parent=MsG0380017509.01.T01
Chr3 three_prime_UTR 97158772 97159016 97158772 ID=MsG0380017509.01.T01:three_prime_utr;Parent=MsG0380017509.01.T01
Gene Sequence

>MsG0380017509.01.T01

ATGAAGTCAATGCCTATTCTTATCTTTACCCTCTTGAGCTTCCCTTCTAAAAATTTTGTCTTCAAATGGGTAGAATCTCGAAAGCCAGAACGATATTCATCGGCTGCACCACTTTCTCCTAATGCGCGCCTGCGTATTGTGTCTGAACGTGTTGATCTCTTTGACAATCTCATCATTTCCGTCACGATAGGCCCTCCAAGTGCAAACCTTATAAACTTGAAGGATAAGAGCAAATGGACTGCAAAAGATGTTGTGGATTCAGTTTTAGCTGACAAATCTTCACTGCGAGTTACCTCAGTTCAGCGCTCAGCCGAGAGTTCAGTTCTCGATGCACATTCTGATGAATTGAAGAAATCAGGAATTTACCGGCATTATGTTGCTTCAACAGCAGAAAGAGATGGTATGCCCTCTCAAATTATTCCTACTTTAGTATTGCAAACGTGCATGTATAGATTACTTGTGCATTCTAATGTTATTTGTACTCCATCAGCGCTTCGACCCTCAGTCCACAGTGGAAAAAAAATGGGGCCTTTACTTGAAAAGACTGTGAGTTCGTTTCGACTTGTCAGTCTACACGAAATTATGTTCCTCCATACAAAGATCCCTGGAGATTTTGGTGAAAAATCAAATTTTGTCTTATTGTATTCATGTAGTAACCTTGTGGGGTGA

Protein sequence

>MsG0380017509.01.T01

MKSMPILIFTLLSFPSKNFVFKWVESRKPERYSSAAPLSPNARLRIVSERVDLFDNLIISVTIGPPSANLINLKDKSKWTAKDVVDSVLADKSSLRVTSVQRSAESSVLDAHSDELKKSGIYRHYVASTAERDGMPSQIIPTLVLQTCMYRLLVHSNVICTPSALRPSVHSGKKMGPLLEKTVSSFRLVSLHEIMFLHTKIPGDFGEKSNFVLLYSCSNLVG*