AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045224.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045224.01.T01 MTR_8g068220 93.713 334 17 1 1 334 1 330 0.0 643
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045224.01.T01 AT4G38020 66.548 281 90 2 54 330 69 349 2.06e-137 394

Find 73 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAAATATTATTTGTTCTT+TGG 0.214392 8:-56059134 None:intergenic
GCACAATGGTGTATCTAATA+TGG 0.253021 8:-56058973 None:intergenic
CATGCTTCTGTTCTTGTTGT+TGG 0.253730 8:+56054986 MsG0880045224.01.T01:CDS
TTTAGTCCTTGATGGAATTC+AGG 0.283941 8:+56056698 MsG0880045224.01.T01:CDS
TTTCAACTCCCTATAGTTTC+CGG 0.307983 8:+56058831 MsG0880045224.01.T01:CDS
TTGGGAATTTCAGCCTTATC+AGG 0.317783 8:-56056492 None:intergenic
TCACTCAATGTTTCAGTTGC+AGG 0.332802 8:+56059086 MsG0880045224.01.T01:CDS
GAGAAATTCGTTGCTCTTGT+TGG 0.339098 8:-56054865 None:intergenic
TCATAAGCTCACATGCTTGC+AGG 0.341911 8:-56059037 None:intergenic
TTGTTTAATTCTTCCTGATA+AGG 0.346817 8:+56056479 MsG0880045224.01.T01:CDS
TTCCGGAAGTTGGAATCATT+TGG 0.348466 8:+56058848 MsG0880045224.01.T01:CDS
TTCCAAATGAAGTTGCTTGC+TGG 0.349311 8:+56058888 MsG0880045224.01.T01:CDS
TTCCAAATGATTCCAACTTC+CGG 0.350690 8:-56058850 None:intergenic
GCCCAGCAAGCAACTTCATT+TGG 0.353611 8:-56058890 None:intergenic
TCCCTATAGTTTCCGGAAGT+TGG 0.354050 8:+56058838 MsG0880045224.01.T01:CDS
TTGTTGGTACTACACCTATC+AGG 0.374644 8:+56055002 MsG0880045224.01.T01:CDS
ATTTCTGTTTGTTCCTTCTT+CGG 0.375164 8:-56054734 None:intergenic
GCGCAGATGGAAACCACTTC+TGG 0.375633 8:-56056668 None:intergenic
ATAGTGATGAGAAAGATTTC+AGG 0.397455 8:+56056558 MsG0880045224.01.T01:CDS
TCCAACTTCCGGAAACTATA+GGG 0.404665 8:-56058839 None:intergenic
TGAAATCTTTCTCATCACTA+TGG 0.405370 8:-56056556 None:intergenic
TTAAGACAGTGTTTCACAAA+TGG 0.406450 8:-56054932 None:intergenic
CGGAGTGCTTTCTCGTTGAA+TGG 0.407160 8:-56058789 None:intergenic
TTCCAACTTCCGGAAACTAT+AGG 0.407679 8:-56058840 None:intergenic
AGAAATTCGTTGCTCTTGTT+GGG 0.412771 8:-56054864 None:intergenic
GACTCATATTCTCCAGTCAT+TGG 0.416718 8:-56059065 None:intergenic
GATCAGCTGTGGCCTTCAAA+TGG 0.421077 8:+56057587 MsG0880045224.01.T01:CDS
TCCAAATGAAGTTGCTTGCT+GGG 0.428331 8:+56058889 MsG0880045224.01.T01:CDS
AATGAAAATTAGAACCTGAT+AGG 0.430852 8:-56055016 None:intergenic
GTGGATTCATTCAACCCATT+GGG 0.465000 8:-56056510 None:intergenic
CAGCGTGTTCTGTGGGGTTG+AGG 0.466546 8:-56054797 None:intergenic
TAAGACAGTGTTTCACAAAT+GGG 0.469819 8:-56054931 None:intergenic
AGCAATGTACCGAGGTTACC+TGG 0.478339 8:-56057562 None:intergenic
AATTGTTCACTGCAGGATCC+AGG 0.480049 8:+56057544 MsG0880045224.01.T01:intron
TGTGGGGTTGAGGATAGAAA+AGG 0.485818 8:-56054787 None:intergenic
AGGATGCGCCTCGGCTAGCT+CGG 0.489834 8:-56058809 None:intergenic
ATAATAACTTACCCATTTGA+AGG 0.490906 8:-56057599 None:intergenic
TCTTGTTGGGTTTGTTGTTG+TGG 0.491235 8:-56054851 None:intergenic
ATCAGCTGTGGCCTTCAAAT+GGG 0.491246 8:+56057588 MsG0880045224.01.T01:CDS
TTATTTACAGAGAAATCTAC+AGG 0.495436 8:+56056418 MsG0880045224.01.T01:intron
AGTGGATTCATTCAACCCAT+TGG 0.495802 8:-56056511 None:intergenic
CATAAGCTCACATGCTTGCA+GGG 0.497407 8:-56059036 None:intergenic
CTTTGAGAAAGGGAACAAAC+TGG 0.498130 8:-56058939 None:intergenic
ACTAAAATCCGATGCGCAGA+TGG 0.499079 8:-56056681 None:intergenic
ATCACAGAAGCTTTGAGAAA+GGG 0.502364 8:-56058949 None:intergenic
TTGAATGGATCACAGCATCC+TGG 0.510624 8:-56058774 None:intergenic
AACAGAGGAAGAACCGAAGA+AGG 0.513684 8:+56054721 None:intergenic
CTGGGCATCCACAGCATGAA+GGG 0.525650 8:+56058907 MsG0880045224.01.T01:CDS
CTTATGAGCATTCCAATGAC+TGG 0.536651 8:+56059053 MsG0880045224.01.T01:CDS
AATCACAGAAGCTTTGAGAA+AGG 0.539971 8:-56058950 None:intergenic
TTGATTAACCCTTCATGCTG+TGG 0.543400 8:-56058915 None:intergenic
TGTTGGGTTTGTTGTTGTGG+TGG 0.543415 8:-56054848 None:intergenic
ATCAAAAGCACTGCCAGAAG+TGG 0.554660 8:+56056655 MsG0880045224.01.T01:CDS
AAGGATAGTACAGTGAGTGT+TGG 0.555337 8:-56054768 None:intergenic
GCTGGGCATCCACAGCATGA+AGG 0.558043 8:+56058906 MsG0880045224.01.T01:CDS
GGAGTAACCGAAAGTCTTGT+GGG 0.567772 8:-56054827 None:intergenic
CTCAATGTTTCAGTTGCAGG+TGG 0.571803 8:+56059089 MsG0880045224.01.T01:CDS
ATGAAAACAGCGTGTTCTGT+GGG 0.572607 8:-56054804 None:intergenic
TGGAGTAACCGAAAGTCTTG+TGG 0.573784 8:-56054828 None:intergenic
ATAAGGCTGAAATTCCCAAT+GGG 0.575863 8:+56056496 MsG0880045224.01.T01:CDS
AGTGGTTTCCATCTGCGCAT+CGG 0.584870 8:+56056673 MsG0880045224.01.T01:CDS
GATGAAAACAGCGTGTTCTG+TGG 0.591318 8:-56054805 None:intergenic
GAGTCACCTGAATTCCATCA+AGG 0.604011 8:-56056704 None:intergenic
GATAAGGCTGAAATTCCCAA+TGG 0.606196 8:+56056495 MsG0880045224.01.T01:CDS
TACATTGCTCAGATCAGCTG+TGG 0.607696 8:+56057576 MsG0880045224.01.T01:CDS
AAAGCACTCCGAGCTAGCCG+AGG 0.621443 8:+56058801 MsG0880045224.01.T01:CDS
GGAGTTGAAAGGATGCGCCT+CGG 0.626018 8:-56058818 None:intergenic
GACACGCACAATAGAATCAG+TGG 0.627366 8:-56056529 None:intergenic
GGAAACTATAGGGAGTTGAA+AGG 0.629169 8:-56058829 None:intergenic
CTGCAGGATCCAGGTAACCT+CGG 0.657699 8:+56057553 MsG0880045224.01.T01:intron
CTGCCTAAAACTAAGCACAA+TGG 0.701900 8:-56058987 None:intergenic
CTGATCTGAGCAATGTACCG+AGG 0.714931 8:-56057570 None:intergenic
TGAAAACAGCGTGTTCTGTG+GGG 0.722883 8:-56054803 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAATAAATTAATTACTT+CGG - Chr8:56058730-56058749 None:intergenic 10.0%
!!! AATATTTTATCATAGAAAAT+AGG - Chr8:56058548-56058567 None:intergenic 10.0%
!!! ATATTTTATCATAGAAAATA+GGG - Chr8:56058547-56058566 None:intergenic 10.0%
!!! TATTAAATTTTTTATATAGG+AGG - Chr8:56058051-56058070 None:intergenic 10.0%
!! AACAATTGAAATAAATTACA+TGG - Chr8:56058697-56058716 None:intergenic 15.0%
!! AGAAAATATTATTTGTTCTT+TGG - Chr8:56059137-56059156 None:intergenic 15.0%
!!! AATTAATTTATTTTGTCAAC+AGG + Chr8:56058734-56058753 MsG0880045224.01.T01:intron 15.0%
!!! ATTATTTGTTGTTTGTTTAA+TGG + Chr8:56055999-56056018 MsG0880045224.01.T01:intron 15.0%
!! AAGTTCATAAATGATCTATA+AGG - Chr8:56058622-56058641 None:intergenic 20.0%
!! ACAAGATAAAAATGTTACAA+TGG + Chr8:56056455-56056474 MsG0880045224.01.T01:CDS 20.0%
!! ACAATGTATACAATATTCAA+TGG + Chr8:56056331-56056350 MsG0880045224.01.T01:intron 20.0%
!! ATATAAAGTTGACAAAAAAG+TGG - Chr8:56057026-56057045 None:intergenic 20.0%
!! ATATCATAAAATGATCAGTT+CGG - Chr8:56058654-56058673 None:intergenic 20.0%
!! ATTAACCAAATAAGAATGAT+TGG - Chr8:56057857-56057876 None:intergenic 20.0%
!! TAAAAGTTAATTGCACAATA+AGG + Chr8:56055291-56055310 MsG0880045224.01.T01:intron 20.0%
!! TTGTTGGAATACTAATTATT+TGG + Chr8:56057429-56057448 MsG0880045224.01.T01:intron 20.0%
!! TTGTTTGAATTTGTAATGTT+TGG + Chr8:56055413-56055432 MsG0880045224.01.T01:intron 20.0%
!! TTTGTAATGTTTGGTAAAAT+TGG + Chr8:56055422-56055441 MsG0880045224.01.T01:intron 20.0%
!!! AAAATAGTGGATATTTGATA+AGG + Chr8:56055327-56055346 MsG0880045224.01.T01:intron 20.0%
!!! AAAATTTTGCGTTTGATTTA+TGG - Chr8:56057327-56057346 None:intergenic 20.0%
!!! ATGACTTGAATCTTTATTTT+AGG + Chr8:56057076-56057095 MsG0880045224.01.T01:intron 20.0%
!!! GTTTTTGTTTTTGATTCTTA+TGG + Chr8:56055096-56055115 MsG0880045224.01.T01:intron 20.0%
!!! TTTTCTGTACAAAGTTATTT+TGG + Chr8:56055061-56055080 MsG0880045224.01.T01:intron 20.0%
!!! TTTTGATAAAAATTGTGGTA+CGG + Chr8:56055974-56055993 MsG0880045224.01.T01:intron 20.0%
! AATGAAAATTAGAACCTGAT+AGG - Chr8:56055019-56055038 None:intergenic 25.0%
! ACAAATGCATAATATATGCA+AGG + Chr8:56057731-56057750 MsG0880045224.01.T01:intron 25.0%
! ATAATAACTTACCCATTTGA+AGG - Chr8:56057602-56057621 None:intergenic 25.0%
! ATCAAATGACAAATGAAAAG+TGG - Chr8:56057054-56057073 None:intergenic 25.0%
! GTCATCTAAATTTGAAAAAC+TGG - Chr8:56056634-56056653 None:intergenic 25.0%
! TAAAAATGAGAGTTACCAAA+CGG + Chr8:56055589-56055608 MsG0880045224.01.T01:intron 25.0%
! TAATCTTGTGAATTGGAAAA+TGG + Chr8:56055145-56055164 MsG0880045224.01.T01:intron 25.0%
! TCAAATAAAGTTTGCAATCA+TGG - Chr8:56057236-56057255 None:intergenic 25.0%
! TGAATAAGATTAACCTTCTA+CGG - Chr8:56057939-56057958 None:intergenic 25.0%
! TTATCATACACCTATTTCAA+AGG - Chr8:56057966-56057985 None:intergenic 25.0%
! TTATCATAGAAAATAGGGAT+AGG - Chr8:56058542-56058561 None:intergenic 25.0%
! TTATTTACAGAGAAATCTAC+AGG + Chr8:56056418-56056437 MsG0880045224.01.T01:intron 25.0%
! TTATTTCAACTAAGATTGCA+GGG + Chr8:56055472-56055491 MsG0880045224.01.T01:intron 25.0%
! TTGTTTAATTCTTCCTGATA+AGG + Chr8:56056479-56056498 MsG0880045224.01.T01:CDS 25.0%
! TTTATTTCAACTAAGATTGC+AGG + Chr8:56055471-56055490 MsG0880045224.01.T01:intron 25.0%
! TTTGATAAGGTAACTTATAG+CGG + Chr8:56055340-56055359 MsG0880045224.01.T01:intron 25.0%
!! AAAACCTGATTTTGAATGAT+TGG + Chr8:56055219-56055238 MsG0880045224.01.T01:intron 25.0%
!! AGATTTAACGATTTTTGTCT+TGG + Chr8:56056741-56056760 MsG0880045224.01.T01:intron 25.0%
!! ATAGGTGTATGATAATCTTT+TGG + Chr8:56057971-56057990 MsG0880045224.01.T01:intron 25.0%
!! CTTTGTTTGGTAAAAAATAG+TGG + Chr8:56055314-56055333 MsG0880045224.01.T01:intron 25.0%
!! GAATATAAGGTGATTTTGTT+AGG + Chr8:56055257-56055276 MsG0880045224.01.T01:intron 25.0%
!! TTTTATCAAAATCCTGATCA+TGG - Chr8:56055965-56055984 None:intergenic 25.0%
!!! AAATGCTTTTAGAGTATGAT+TGG - Chr8:56056265-56056284 None:intergenic 25.0%
!!! AATTTATTTTGTCAACAGGA+TGG + Chr8:56058738-56058757 MsG0880045224.01.T01:intron 25.0%
!!! CAGGATTTTGATAAAAATTG+TGG + Chr8:56055969-56055988 MsG0880045224.01.T01:intron 25.0%
AAAAATGAGAGTTACCAAAC+GGG + Chr8:56055590-56055609 MsG0880045224.01.T01:intron 30.0%
AACAAAAGCCAAATAAGGAA+TGG - Chr8:56056809-56056828 None:intergenic 30.0%
AACCAAATAAGAATGATTGG+TGG - Chr8:56057854-56057873 None:intergenic 30.0%
AAGATTCCATAGAGAAAAAC+AGG - Chr8:56057653-56057672 None:intergenic 30.0%
AGCTGGTATATCTTAAACAT+AGG - Chr8:56057679-56057698 None:intergenic 30.0%
ATAGTGATGAGAAAGATTTC+AGG + Chr8:56056558-56056577 MsG0880045224.01.T01:CDS 30.0%
ATATTCCAATACAATGAAGC+TGG - Chr8:56057798-56057817 None:intergenic 30.0%
ATGATTAAAAAAGACCCGTT+TGG - Chr8:56055607-56055626 None:intergenic 30.0%
ATTCAGGTGACTCTTAATAT+CGG + Chr8:56056714-56056733 MsG0880045224.01.T01:intron 30.0%
ATTCTTTCAAAGAACGTAGT+TGG - Chr8:56056062-56056081 None:intergenic 30.0%
ATTTCCCACATGATATATGT+AGG - Chr8:56057378-56057397 None:intergenic 30.0%
ATTTCTGTTTGTTCCTTCTT+CGG - Chr8:56054737-56054756 None:intergenic 30.0%
CCTACAAGAATAAAATGATG+AGG - Chr8:56056147-56056166 None:intergenic 30.0%
CTTATTTGGTTAATGTTGAC+TGG + Chr8:56057863-56057882 MsG0880045224.01.T01:intron 30.0%
GAATAAGATTAACCTTCTAC+GGG - Chr8:56057938-56057957 None:intergenic 30.0%
GCTGGTATATCTTAAACATA+GGG - Chr8:56057678-56057697 None:intergenic 30.0%
GTAATGTTTGGTAAAATTGG+CGG + Chr8:56055425-56055444 MsG0880045224.01.T01:intron 30.0%
GTACAGAAAAAGCAACAAAA+GGG - Chr8:56055051-56055070 None:intergenic 30.0%
TAAGACAGTGTTTCACAAAT+GGG - Chr8:56054934-56054953 None:intergenic 30.0%
TAATACACGCACTAAATTTG+AGG + Chr8:56055671-56055690 MsG0880045224.01.T01:intron 30.0%
TATTGTGTGTGTTTGGTTAT+GGG + Chr8:56055188-56055207 MsG0880045224.01.T01:intron 30.0%
TATTTCAACTAAGATTGCAG+GGG + Chr8:56055473-56055492 MsG0880045224.01.T01:intron 30.0%
TCATCCTACATATATCATGT+GGG + Chr8:56057371-56057390 MsG0880045224.01.T01:intron 30.0%
TCTAAATTTGAAAAACTGGC+AGG - Chr8:56056630-56056649 None:intergenic 30.0%
TCTTTCAATGAGATATAGAG+AGG - Chr8:56056100-56056119 None:intergenic 30.0%
TGAAATCTTTCTCATCACTA+TGG - Chr8:56056559-56056578 None:intergenic 30.0%
TGAACCAATCATTCAAAATC+AGG - Chr8:56055226-56055245 None:intergenic 30.0%
TGACATGTTAAATAAACGTG+TGG + Chr8:56055877-56055896 MsG0880045224.01.T01:intron 30.0%
TGTACAGAAAAAGCAACAAA+AGG - Chr8:56055052-56055071 None:intergenic 30.0%
TGTAGTCTAATCTTGTGAAT+TGG + Chr8:56055138-56055157 MsG0880045224.01.T01:intron 30.0%
TTAAGACAGTGTTTCACAAA+TGG - Chr8:56054935-56054954 None:intergenic 30.0%
TTATTGTGTGTGTTTGGTTA+TGG + Chr8:56055187-56055206 MsG0880045224.01.T01:intron 30.0%
TTCATCCTACATATATCATG+TGG + Chr8:56057370-56057389 MsG0880045224.01.T01:intron 30.0%
TTGCACGAGTATACATTATA+AGG - Chr8:56056873-56056892 None:intergenic 30.0%
! AATGTGTTATTGTGTGTGTT+TGG + Chr8:56055181-56055200 MsG0880045224.01.T01:intron 30.0%
! AGAATATCATGGACTTTTGT+TGG + Chr8:56057413-56057432 MsG0880045224.01.T01:intron 30.0%
! CAGTTTAGAACAATTATGAG+AGG + Chr8:56056174-56056193 MsG0880045224.01.T01:intron 30.0%
! CATACGCTAAGTTGAATATA+AGG + Chr8:56055244-56055263 MsG0880045224.01.T01:intron 30.0%
! CCTCATCATTTTATTCTTGT+AGG + Chr8:56056144-56056163 MsG0880045224.01.T01:intron 30.0%
! GATTCTTATGGTCTTTTCTT+TGG + Chr8:56055108-56055127 MsG0880045224.01.T01:intron 30.0%
! GGTATTTTATTGAAGACCAA+TGG - Chr8:56058093-56058112 None:intergenic 30.0%
! TATTTAGAATTGTTCACTGC+AGG + Chr8:56057537-56057556 MsG0880045224.01.T01:intron 30.0%
! TCTGAAACTCAAAATTCTCA+TGG - Chr8:56057494-56057513 None:intergenic 30.0%
! TGTCTTGGAAATTTTACCAT+CGG + Chr8:56056756-56056775 MsG0880045224.01.T01:intron 30.0%
! TTATTTTCACGAGCTTACAA+CGG - Chr8:56055555-56055574 None:intergenic 30.0%
! TTTTGGCATTAACAGTCAAA+GGG + Chr8:56057988-56058007 MsG0880045224.01.T01:intron 30.0%
!! ACAAGAGATTTGTATCGATT+TGG - Chr8:56056903-56056922 None:intergenic 30.0%
!! TAATGTTGACTGGCTTTAAA+TGG + Chr8:56057873-56057892 MsG0880045224.01.T01:intron 30.0%
!! TATGGTCTTTTCTTTGGTTT+TGG + Chr8:56055114-56055133 MsG0880045224.01.T01:intron 30.0%
!! TATTCACCATCCTTTGAAAT+AGG + Chr8:56057953-56057972 MsG0880045224.01.T01:intron 30.0%
!!! AAGCTGGTATGTCTTTTTTT+TGG - Chr8:56057782-56057801 None:intergenic 30.0%
!!! TTCCTTATTTGGCTTTTGTT+TGG + Chr8:56056809-56056828 MsG0880045224.01.T01:intron 30.0%
AATCTTCCTACACTTTCTCT+TGG - Chr8:56058214-56058233 None:intergenic 35.0%
ACATACCAGCTTCATTGTAT+TGG + Chr8:56057790-56057809 MsG0880045224.01.T01:intron 35.0%
AGAAATTCGTTGCTCTTGTT+GGG - Chr8:56054867-56054886 None:intergenic 35.0%
AGAGACACACAATATTACAG+TGG + Chr8:56058441-56058460 MsG0880045224.01.T01:intron 35.0%
AGGATTCATCATAGTGTATC+GGG - Chr8:56056961-56056980 None:intergenic 35.0%
AGTACTAATTGACAGCAACT+AGG - Chr8:56058114-56058133 None:intergenic 35.0%
ATAAGGCTGAAATTCCCAAT+GGG + Chr8:56056496-56056515 MsG0880045224.01.T01:CDS 35.0%
ATACTTCCTCAATTGAAAGG+AGG + Chr8:56056779-56056798 MsG0880045224.01.T01:intron 35.0%
ATTGTGTGTGTTTGGTTATG+GGG + Chr8:56055189-56055208 MsG0880045224.01.T01:intron 35.0%
CACCACCAATCATTCTTATT+TGG + Chr8:56057849-56057868 MsG0880045224.01.T01:intron 35.0%
CACTACCATATAGATTCTAG+AGG - Chr8:56058151-56058170 None:intergenic 35.0%
CAGGATTCATCATAGTGTAT+CGG - Chr8:56056962-56056981 None:intergenic 35.0%
CATACACCTATTTCAAAGGA+TGG - Chr8:56057962-56057981 None:intergenic 35.0%
CTAACTAAGAGAGATGAGTT+AGG - Chr8:56056364-56056383 None:intergenic 35.0%
GACCAAACAAAAGCCAAATA+AGG - Chr8:56056814-56056833 None:intergenic 35.0%
GCACAATGGTGTATCTAATA+TGG - Chr8:56058976-56058995 None:intergenic 35.0%
GCACTAACTTAGAATTCACA+TGG - Chr8:56055907-56055926 None:intergenic 35.0%
GTGTTTCATTAGTATGAACC+AGG - Chr8:56056981-56057000 None:intergenic 35.0%
TATGTATTGTCGTGTTCCAT+TGG + Chr8:56058074-56058093 MsG0880045224.01.T01:intron 35.0%
TCTAACATGACGCTAAAGTT+TGG - Chr8:56055724-56055743 None:intergenic 35.0%
TGCATAATATATGCAAGGTC+CGG + Chr8:56057736-56057755 MsG0880045224.01.T01:intron 35.0%
TGTGCACATTGATGTGAAAT+GGG - Chr8:56056306-56056325 None:intergenic 35.0%
TTCCAAATGATTCCAACTTC+CGG - Chr8:56058853-56058872 None:intergenic 35.0%
TTCTATGTCAATATCGCGAA+AGG + Chr8:56057462-56057481 MsG0880045224.01.T01:intron 35.0%
TTTAAGTGCCTAGTTATGTC+AGG + Chr8:56057293-56057312 MsG0880045224.01.T01:intron 35.0%
TTTAGTCCTTGATGGAATTC+AGG + Chr8:56056698-56056717 MsG0880045224.01.T01:CDS 35.0%
TTTCAACTCCCTATAGTTTC+CGG + Chr8:56058831-56058850 MsG0880045224.01.T01:CDS 35.0%
TTTCACAACCTGACATAACT+AGG - Chr8:56057304-56057323 None:intergenic 35.0%
TTTCCTTGAGGAAGAAAATG+AGG - Chr8:56058027-56058046 None:intergenic 35.0%
! AACTGGCAGGAATTTTCATA+AGG - Chr8:56056617-56056636 None:intergenic 35.0%
! AAGAGAAAGTGTAGGAAGAT+TGG + Chr8:56058213-56058232 MsG0880045224.01.T01:intron 35.0%
! ACTGGCAGGAATTTTCATAA+GGG - Chr8:56056616-56056635 None:intergenic 35.0%
! CTTTTGGCATTAACAGTCAA+AGG + Chr8:56057987-56058006 MsG0880045224.01.T01:intron 35.0%
! TATTTTCACGAGCTTACAAC+GGG - Chr8:56055554-56055573 None:intergenic 35.0%
! TCTACGGGTTTGTTTGAAAA+GGG - Chr8:56057923-56057942 None:intergenic 35.0%
! TTCTACGGGTTTGTTTGAAA+AGG - Chr8:56057924-56057943 None:intergenic 35.0%
! TTGCTGCTTATTCTATGAAG+AGG + Chr8:56056838-56056857 MsG0880045224.01.T01:intron 35.0%
! TTTTCAAACAAACCCGTAGA+AGG + Chr8:56057923-56057942 MsG0880045224.01.T01:intron 35.0%
! TTTTCATCCCACAAGACTTT+CGG + Chr8:56054820-56054839 MsG0880045224.01.T01:CDS 35.0%
!! AATCACAGAAGCTTTGAGAA+AGG - Chr8:56058953-56058972 None:intergenic 35.0%
!! ACACCATTGTGCTTAGTTTT+AGG + Chr8:56058984-56059003 MsG0880045224.01.T01:CDS 35.0%
!! ATCACAGAAGCTTTGAGAAA+GGG - Chr8:56058952-56058971 None:intergenic 35.0%
!! CAATTAGTACTGATGCCAAT+GGG + Chr8:56058123-56058142 MsG0880045224.01.T01:intron 35.0%
!! GATCATTTTGATCCATGATC+AGG + Chr8:56055950-56055969 MsG0880045224.01.T01:intron 35.0%
!! TCAATTAGTACTGATGCCAA+TGG + Chr8:56058122-56058141 MsG0880045224.01.T01:intron 35.0%
!! TCTGATCCTGTTTTTCTCTA+TGG + Chr8:56057644-56057663 MsG0880045224.01.T01:intron 35.0%
!! TGATTGGTGGTGTATAGATT+CGG - Chr8:56057841-56057860 None:intergenic 35.0%
!! TTGCACAATAAGGCTTTGTT+TGG + Chr8:56055301-56055320 MsG0880045224.01.T01:intron 35.0%
!!! ATGTTTGGTTCCACTTTTTG+AGG - Chr8:56055818-56055837 None:intergenic 35.0%
!!! CTGGTATGTCTTTTTTTTGG+TGG - Chr8:56057779-56057798 None:intergenic 35.0%
!!! GTATGTCTTTTTTTTGGTGG+TGG - Chr8:56057776-56057795 None:intergenic 35.0%
AAGGATAGTACAGTGAGTGT+TGG - Chr8:56054771-56054790 None:intergenic 40.0%
ACACTTGTGTATGAACTTCG+AGG - Chr8:56056025-56056044 None:intergenic 40.0%
ATACACTCGAGATGATGCAT+TGG + Chr8:56055836-56055855 MsG0880045224.01.T01:intron 40.0%
ATAGAACGAGTTCAGAGAGA+AGG + Chr8:56058240-56058259 MsG0880045224.01.T01:intron 40.0%
ATGAAAACAGCGTGTTCTGT+GGG - Chr8:56054807-56054826 None:intergenic 40.0%
ATTATAGCAAGCAGAAACGC+AGG - Chr8:56057625-56057644 None:intergenic 40.0%
CATAATATATGCAAGGTCCG+GGG + Chr8:56057738-56057757 MsG0880045224.01.T01:intron 40.0%
CATCATCTCGAGTGTATGTT+TGG - Chr8:56055833-56055852 None:intergenic 40.0%
CGATACACTATGATGAATCC+TGG + Chr8:56056960-56056979 MsG0880045224.01.T01:intron 40.0%
CGGATACTTCCTCAATTGAA+AGG + Chr8:56056776-56056795 MsG0880045224.01.T01:intron 40.0%
CTGCCTAAAACTAAGCACAA+TGG - Chr8:56058990-56059009 None:intergenic 40.0%
CTGTGCACATTGATGTGAAA+TGG - Chr8:56056307-56056326 None:intergenic 40.0%
CTTATGAGCATTCCAATGAC+TGG + Chr8:56059053-56059072 MsG0880045224.01.T01:CDS 40.0%
GACTCATATTCTCCAGTCAT+TGG - Chr8:56059068-56059087 None:intergenic 40.0%
GAGAAATTCGTTGCTCTTGT+TGG - Chr8:56054868-56054887 None:intergenic 40.0%
GATAAGGCTGAAATTCCCAA+TGG + Chr8:56056495-56056514 MsG0880045224.01.T01:CDS 40.0%
GATCAAAATGATCGCCTAGT+CGG - Chr8:56055943-56055962 None:intergenic 40.0%
GCATAATATATGCAAGGTCC+GGG + Chr8:56057737-56057756 MsG0880045224.01.T01:intron 40.0%
GGAAACTATAGGGAGTTGAA+AGG - Chr8:56058832-56058851 None:intergenic 40.0%
GGAGGCAAAATGAATTCTAG+AGG - Chr8:56055797-56055816 None:intergenic 40.0%
GTGGATTCATTCAACCCATT+GGG - Chr8:56056513-56056532 None:intergenic 40.0%
GTTGACGATGCAGAATATCA+TGG + Chr8:56057402-56057421 MsG0880045224.01.T01:intron 40.0%
TATATAGGAGGCTTTCCTTG+AGG - Chr8:56058039-56058058 None:intergenic 40.0%
TCACTCAATGTTTCAGTTGC+AGG + Chr8:56059086-56059105 MsG0880045224.01.T01:CDS 40.0%
TCCAAATGAAGTTGCTTGCT+GGG + Chr8:56058889-56058908 MsG0880045224.01.T01:CDS 40.0%
TCCAACTTCCGGAAACTATA+GGG - Chr8:56058842-56058861 None:intergenic 40.0%
TGCATTGCAGTTACAGACAA+GGG + Chr8:56058351-56058370 MsG0880045224.01.T01:intron 40.0%
TGCTACTAAGCTTCAAAGCT+AGG + Chr8:56056215-56056234 MsG0880045224.01.T01:intron 40.0%
TTCCAAATGAAGTTGCTTGC+TGG + Chr8:56058888-56058907 MsG0880045224.01.T01:CDS 40.0%
TTCCAACTTCCGGAAACTAT+AGG - Chr8:56058843-56058862 None:intergenic 40.0%
TTCCGGAAGTTGGAATCATT+TGG + Chr8:56058848-56058867 MsG0880045224.01.T01:CDS 40.0%
TTGATTAACCCTTCATGCTG+TGG - Chr8:56058918-56058937 None:intergenic 40.0%
TTGTTGGTACTACACCTATC+AGG + Chr8:56055002-56055021 MsG0880045224.01.T01:CDS 40.0%
! AGTGGATTCATTCAACCCAT+TGG - Chr8:56056514-56056533 None:intergenic 40.0%
! CAACCTCATTTTCTTCCTCA+AGG + Chr8:56058021-56058040 MsG0880045224.01.T01:intron 40.0%
! CATGCTTCTGTTCTTGTTGT+TGG + Chr8:56054986-56055005 MsG0880045224.01.T01:CDS 40.0%
! CATTTTGCCTCCTCAAAAAG+TGG + Chr8:56055805-56055824 MsG0880045224.01.T01:intron 40.0%
! CTTGCAGGGATTTTTCTGAA+AGG - Chr8:56059025-56059044 None:intergenic 40.0%
! CTTTGAGAAAGGGAACAAAC+TGG - Chr8:56058942-56058961 None:intergenic 40.0%
! GAGAAACCAAGAGAAAGTGT+AGG + Chr8:56058205-56058224 MsG0880045224.01.T01:intron 40.0%
! TTGGGAATTTCAGCCTTATC+AGG - Chr8:56056495-56056514 None:intergenic 40.0%
!! CATCGGATTTTAGTCCTTGA+TGG + Chr8:56056690-56056709 MsG0880045224.01.T01:CDS 40.0%
!! TCAATTGAGGAAGTATCCGA+TGG - Chr8:56056775-56056794 None:intergenic 40.0%
!! TCTTGTTGGGTTTGTTGTTG+TGG - Chr8:56054854-56054873 None:intergenic 40.0%
!!! TGCTTAGTTTTAGGCAGTGA+AGG + Chr8:56058993-56059012 MsG0880045224.01.T01:CDS 40.0%
!!! TTTGGTTCCACTTTTTGAGG+AGG - Chr8:56055815-56055834 None:intergenic 40.0%
AATTGTTCACTGCAGGATCC+AGG + Chr8:56057544-56057563 MsG0880045224.01.T01:intron 45.0%
ACTAAAATCCGATGCGCAGA+TGG - Chr8:56056684-56056703 None:intergenic 45.0%
ATCAGCTGTGGCCTTCAAAT+GGG + Chr8:56057588-56057607 MsG0880045224.01.T01:CDS 45.0%
ATCCCGCTATCCTAACTTCA+GGG + Chr8:56058481-56058500 MsG0880045224.01.T01:intron 45.0%
CATAAGCTCACATGCTTGCA+GGG - Chr8:56059039-56059058 None:intergenic 45.0%
CCTAGTCGGTCAAAACAATG+TGG - Chr8:56055929-56055948 None:intergenic 45.0%
CTAAGATTGCAGGGGTAAGA+TGG + Chr8:56055481-56055500 MsG0880045224.01.T01:intron 45.0%
CTCAATGTTTCAGTTGCAGG+TGG + Chr8:56059089-56059108 MsG0880045224.01.T01:CDS 45.0%
CTGCATTGCAGTTACAGACA+AGG + Chr8:56058350-56058369 MsG0880045224.01.T01:intron 45.0%
GACACGCACAATAGAATCAG+TGG - Chr8:56056532-56056551 None:intergenic 45.0%
GAGTCACCTGAATTCCATCA+AGG - Chr8:56056707-56056726 None:intergenic 45.0%
GATGAAAACAGCGTGTTCTG+TGG - Chr8:56054808-56054827 None:intergenic 45.0%
GCATTGCAGTTACAGACAAG+GGG + Chr8:56058352-56058371 MsG0880045224.01.T01:intron 45.0%
GGCTTAGTTGACCCAGATAA+CGG - Chr8:56058521-56058540 None:intergenic 45.0%
TACATTGCTCAGATCAGCTG+TGG + Chr8:56057576-56057595 MsG0880045224.01.T01:CDS 45.0%
TATCCCGCTATCCTAACTTC+AGG + Chr8:56058480-56058499 MsG0880045224.01.T01:intron 45.0%
TCATAAGCTCACATGCTTGC+AGG - Chr8:56059040-56059059 None:intergenic 45.0%
TCCCTATAGTTTCCGGAAGT+TGG + Chr8:56058838-56058857 MsG0880045224.01.T01:CDS 45.0%
TGAAAACAGCGTGTTCTGTG+GGG - Chr8:56054806-56054825 None:intergenic 45.0%
TGGAGTAACCGAAAGTCTTG+TGG - Chr8:56054831-56054850 None:intergenic 45.0%
TGTGGGGTTGAGGATAGAAA+AGG - Chr8:56054790-56054809 None:intergenic 45.0%
TTGAATGGATCACAGCATCC+TGG - Chr8:56058777-56058796 None:intergenic 45.0%
! CTATATGGTAGTGATGCCCA+TGG + Chr8:56058158-56058177 MsG0880045224.01.T01:intron 45.0%
! GATGGAGTTTTTCTGCTTCC+AGG + Chr8:56058756-56058775 MsG0880045224.01.T01:CDS 45.0%
! GGAGTAACCGAAAGTCTTGT+GGG - Chr8:56054830-56054849 None:intergenic 45.0%
! TAGATTCTAGAGGCTCCCAT+TGG - Chr8:56058141-56058160 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+GGG + Chr8:56057708-56057727 MsG0880045224.01.T01:intron 45.0%
!! ATCAAAAGCACTGCCAGAAG+TGG + Chr8:56056655-56056674 MsG0880045224.01.T01:CDS 45.0%
!! GGGAGCCTCTAGAATCTATA+TGG + Chr8:56058143-56058162 MsG0880045224.01.T01:intron 45.0%
!! GTTTTAGGCAGTGAAGGAAG+TGG + Chr8:56058999-56059018 MsG0880045224.01.T01:CDS 45.0%
!! TGTTGGGTTTGTTGTTGTGG+TGG - Chr8:56054851-56054870 None:intergenic 45.0%
!!! CCACATTGTTTTGACCGACT+AGG + Chr8:56055926-56055945 MsG0880045224.01.T01:intron 45.0%
!!! GTCTTTTTTTTGGTGGTGGC+CGG - Chr8:56057772-56057791 None:intergenic 45.0%
!!! ATGTATTAAATTTTTTATAT+AGG - Chr8:56058054-56058073 None:intergenic 5.0%
AGCAATGTACCGAGGTTACC+TGG - Chr8:56057565-56057584 None:intergenic 50.0%
AGCATACTGCACCATCTCCA+TGG - Chr8:56058178-56058197 None:intergenic 50.0%
AGTGGTTTCCATCTGCGCAT+CGG + Chr8:56056673-56056692 MsG0880045224.01.T01:CDS 50.0%
CGACCCTGAAGTTAGGATAG+CGG - Chr8:56058487-56058506 None:intergenic 50.0%
CGCTATCCTAACTTCAGGGT+CGG + Chr8:56058485-56058504 MsG0880045224.01.T01:intron 50.0%
CTGATCTGAGCAATGTACCG+AGG - Chr8:56057573-56057592 None:intergenic 50.0%
GACCCTGAAGTTAGGATAGC+GGG - Chr8:56058486-56058505 None:intergenic 50.0%
GATCAGCTGTGGCCTTCAAA+TGG + Chr8:56057587-56057606 MsG0880045224.01.T01:CDS 50.0%
GCATACTGCACCATCTCCAT+GGG - Chr8:56058177-56058196 None:intergenic 50.0%
GCCCAGCAAGCAACTTCATT+TGG - Chr8:56058893-56058912 None:intergenic 50.0%
GTGAGCTTAGCTCAGTTGGT+AGG + Chr8:56057707-56057726 MsG0880045224.01.T01:intron 50.0%
GTGTGTGTTTGGTTATGGGG+TGG + Chr8:56055192-56055211 MsG0880045224.01.T01:intron 50.0%
TGGAGATGGTGCAGTATGCT+AGG + Chr8:56058178-56058197 MsG0880045224.01.T01:intron 50.0%
! CGGAGTGCTTTCTCGTTGAA+TGG - Chr8:56058792-56058811 None:intergenic 50.0%
! GAGGCGCTCCATTCCTTATT+TGG + Chr8:56056798-56056817 MsG0880045224.01.T01:intron 50.0%
! GCTTCTCTGTGCCGTTATCT+GGG + Chr8:56058507-56058526 MsG0880045224.01.T01:intron 50.0%
!! TAGGATAGCGGGATAGCATG+TGG - Chr8:56058475-56058494 None:intergenic 50.0%
AAGGTCCGGGGTTCAAACTC+CGG + Chr8:56057750-56057769 MsG0880045224.01.T01:intron 55.0%
CCAACTGAGCTAAGCTCACG+AGG - Chr8:56057706-56057725 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + Chr8:56057703-56057722 MsG0880045224.01.T01:intron 55.0%
CTGCAGGATCCAGGTAACCT+CGG + Chr8:56057553-56057572 MsG0880045224.01.T01:intron 55.0%
CTGGGCATCCACAGCATGAA+GGG + Chr8:56058907-56058926 MsG0880045224.01.T01:CDS 55.0%
GAGAAGCCGACCCTGAAGTT+AGG - Chr8:56058494-56058513 None:intergenic 55.0%
GCGCAGATGGAAACCACTTC+TGG - Chr8:56056671-56056690 None:intergenic 55.0%
GGAGTTGAAAGGATGCGCCT+CGG - Chr8:56058821-56058840 None:intergenic 55.0%
GGTAGTGATGCCCATGGAGA+TGG + Chr8:56058164-56058183 MsG0880045224.01.T01:intron 55.0%
TAAGCTCACGAGGACGAAGC+TGG - Chr8:56057696-56057715 None:intergenic 55.0%
! ATAGCGGGATAGCATGTGGC+GGG - Chr8:56058471-56058490 None:intergenic 55.0%
! GGAGCGCCTCCTTTCAATTG+AGG - Chr8:56056788-56056807 None:intergenic 55.0%
! GGCTTCTCTGTGCCGTTATC+TGG + Chr8:56058506-56058525 MsG0880045224.01.T01:intron 55.0%
!! GATAGCGGGATAGCATGTGG+CGG - Chr8:56058472-56058491 None:intergenic 55.0%
CAGCGTGTTCTGTGGGGTTG+AGG - Chr8:56054800-56054819 None:intergenic 60.0%
GCTGGGCATCCACAGCATGA+AGG + Chr8:56058906-56058925 MsG0880045224.01.T01:CDS 60.0%
! AAAGCACTCCGAGCTAGCCG+AGG + Chr8:56058801-56058820 MsG0880045224.01.T01:CDS 60.0%
GGTGGCCGGAGTTTGAACCC+CGG - Chr8:56057758-56057777 None:intergenic 65.0%
! AGGATGCGCCTCGGCTAGCT+CGG - Chr8:56058812-56058831 None:intergenic 65.0%
! CGGGATAGCATGTGGCGGGA+TGG - Chr8:56058467-56058486 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 56054729 56059190 56054729 ID=MsG0880045224.01;Name=MsG0880045224.01
Chr8 mRNA 56054729 56059190 56054729 ID=MsG0880045224.01.T01;Parent=MsG0880045224.01;Name=MsG0880045224.01.T01;_AED=0.38;_eAED=0.38;_QI=26|1|1|1|0.66|0.5|4|42|334
Chr8 exon 56054729 56055023 56054729 ID=MsG0880045224.01.T01:exon:823;Parent=MsG0880045224.01.T01
Chr8 exon 56056428 56056719 56056428 ID=MsG0880045224.01.T01:exon:824;Parent=MsG0880045224.01.T01
Chr8 exon 56057559 56057609 56057559 ID=MsG0880045224.01.T01:exon:825;Parent=MsG0880045224.01.T01
Chr8 exon 56058756 56059190 56058756 ID=MsG0880045224.01.T01:exon:826;Parent=MsG0880045224.01.T01
Chr8 five_prime_UTR 56054729 56054754 56054729 ID=MsG0880045224.01.T01:five_prime_utr;Parent=MsG0880045224.01.T01
Chr8 CDS 56054755 56055023 56054755 ID=MsG0880045224.01.T01:cds;Parent=MsG0880045224.01.T01
Chr8 CDS 56056428 56056719 56056428 ID=MsG0880045224.01.T01:cds;Parent=MsG0880045224.01.T01
Chr8 CDS 56057559 56057609 56057559 ID=MsG0880045224.01.T01:cds;Parent=MsG0880045224.01.T01
Chr8 CDS 56058756 56059148 56058756 ID=MsG0880045224.01.T01:cds;Parent=MsG0880045224.01.T01
Chr8 three_prime_UTR 56059149 56059190 56059149 ID=MsG0880045224.01.T01:three_prime_utr;Parent=MsG0880045224.01.T01
Gene Sequence

>MsG0880045224.01.T01

ATGCAATGCTACACCAACACTCACTGTACTATCCTTTTCTATCCTCAACCCCACAGAACACGCTGTTTTCATCCCACAAGACTTTCGGTTACTCCACCACAACAACAAACCCAACAAGAGCAACGAATTTCTCACGATTTTGACGAAAAATCGAAACTAATAACAAGTGCTTCAAACCCATTTGTGAAACACTGTCTTAAACTTCGTAATAATTCTTCTTATCGTCGTTCTCATGCTTCTGTTCTTGTTGTTGGTACTACACCTATCAGAGAAATCTACAGGTTTCAAGAGTCATCACAAGATAAAAATGTTACAATGGATTGTTTAATTCTTCCTGATAAGGCTGAAATTCCCAATGGGTTGAATGAATCCACTGATTCTATTGTGCGTGTCAGCTCCATAGTGATGAGAAAGATTTCAGGTCTGCAGTCGACTGATTCAATTGATGCAATTGCCCTTATGAAAATTCCTGCCAGTTTTTCAAATTTAGATGACGATCAAAAGCACTGCCAGAAGTGGTTTCCATCTGCGCATCGGATTTTAGTCCTTGATGGAATTCAGGATCCAGGTAACCTCGGTACATTGCTCAGATCAGCTGTGGCCTTCAAATGGGATGGAGTTTTTCTGCTTCCAGGATGCTGTGATCCATTCAACGAGAAAGCACTCCGAGCTAGCCGAGGCGCATCCTTTCAACTCCCTATAGTTTCCGGAAGTTGGAATCATTTGGAATCTCTCAAAGAAGAATTCCAAATGAAGTTGCTTGCTGGGCATCCACAGCATGAAGGGTTAATCAAGCCAGTTTGTTCCCTTTCTCAAAGCTTCTGTGATTCCATATTAGATACACCATTGTGCTTAGTTTTAGGCAGTGAAGGAAGTGGCCTTTCAGAAAAATCCCTGCAAGCATGTGAGCTTATGAGCATTCCAATGACTGGAGAATATGAGTCACTCAATGTTTCAGTTGCAGGTGGAATTTTCTTGTATATGCTACAACCAAAGAACAAATAA

Protein sequence

>MsG0880045224.01.T01

MQCYTNTHCTILFYPQPHRTRCFHPTRLSVTPPQQQTQQEQRISHDFDEKSKLITSASNPFVKHCLKLRNNSSYRRSHASVLVVGTTPIREIYRFQESSQDKNVTMDCLILPDKAEIPNGLNESTDSIVRVSSIVMRKISGLQSTDSIDAIALMKIPASFSNLDDDQKHCQKWFPSAHRILVLDGIQDPGNLGTLLRSAVAFKWDGVFLLPGCCDPFNEKALRASRGASFQLPIVSGSWNHLESLKEEFQMKLLAGHPQHEGLIKPVCSLSQSFCDSILDTPLCLVLGSEGSGLSEKSLQACELMSIPMTGEYESLNVSVAGGIFLYMLQPKNK*