AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880047540.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047540.01.T01 MTR_4g129490 93.962 265 16 0 1 265 1 265 0.0 520
MsG0880047540.01.T01 MTR_2g041620 29.255 188 108 5 58 236 106 277 7.19e-13 67.4
MsG0880047540.01.T01 MTR_2g041620 29.255 188 108 5 58 236 106 277 7.30e-13 67.4
MsG0880047540.01.T01 MTR_2g041620 29.255 188 108 5 58 236 94 265 8.72e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047540.01.T01 AT4G28030 64.407 236 84 0 27 262 31 266 2.61e-114 330
MsG0880047540.01.T01 AT4G28030 61.017 236 81 1 27 262 31 255 4.95e-103 300
MsG0880047540.01.T01 AT2G06025 30.481 187 107 4 58 236 95 266 3.01e-16 77.0
MsG0880047540.01.T01 AT2G06025 30.481 187 107 4 58 236 95 266 3.01e-16 77.0
MsG0880047540.01.T01 AT2G06025 30.481 187 107 4 58 236 95 266 3.01e-16 77.0

Find 64 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCACTTAAGGAGCGTGTTTC+AGG 0.154494 8:+87838038 MsG0880047540.01.T01:CDS
CAAAGTCAGTTGCTCGTAAT+TGG 0.193463 8:+87838901 MsG0880047540.01.T01:CDS
CTTTCTACGATGATGAATTC+TGG 0.240043 8:+87837766 MsG0880047540.01.T01:CDS
TTCATGTACAATTTCTTTGC+TGG 0.253198 8:-87840806 None:intergenic
GTTAATGCAGAATTTGAAAA+TGG 0.275846 8:-87837642 None:intergenic
CTTTCAATCACCTAATTTGA+TGG 0.329354 8:+87840914 MsG0880047540.01.T01:exon
CACGACAACACCATCAAATT+AGG 0.334600 8:-87840924 None:intergenic
CGTAAGTGTCTGGACGAAAT+TGG 0.337880 8:-87837821 None:intergenic
AGGATTGGAATTGAGTTCTA+AGG 0.343231 8:-87837680 None:intergenic
GCTAGAGAGTTGCACAGAAA+TGG 0.349757 8:+87838852 MsG0880047540.01.T01:CDS
ATGGAGAAGATGAATGAATT+GGG 0.356769 8:-87837623 None:intergenic
AAAGTCAGTTGCTCGTAATT+GGG 0.384466 8:+87838902 MsG0880047540.01.T01:CDS
AGTCTTCCTGATGAAATTGT+AGG 0.385815 8:+87838341 MsG0880047540.01.T01:CDS
CTTTGCTGGTTCATTGTCAA+TGG 0.386629 8:-87840792 None:intergenic
AATGGAGAAGATGAATGAAT+TGG 0.396409 8:-87837624 None:intergenic
TGATTTATGTTCTTCATGTA+AGG 0.404309 8:+87838136 MsG0880047540.01.T01:CDS
ACGTGAGTTTGAAGCACTTA+AGG 0.420143 8:+87838025 MsG0880047540.01.T01:CDS
TTTCTACGATGATGAATTCT+GGG 0.435140 8:+87837767 MsG0880047540.01.T01:CDS
CTAGAGAGTTGCACAGAAAT+GGG 0.439454 8:+87838853 MsG0880047540.01.T01:CDS
TTTACTTATGAATGAAATGA+AGG 0.445885 8:-87841036 None:intergenic
ACTTGGACTCCGTAAGTGTC+TGG 0.451152 8:-87837831 None:intergenic
TTCATCCCTACAATTTCATC+AGG 0.451868 8:-87838347 None:intergenic
CCCGTGTGACTGTGTTAATA+TGG 0.473695 8:+87840955 MsG0880047540.01.T01:three_prime_UTR
CAATTTCGTCCAGACACTTA+CGG 0.474222 8:+87837822 MsG0880047540.01.T01:CDS
GAGTGATGAGCCTGCATGGC+AGG 0.475010 8:+87840847 MsG0880047540.01.T01:CDS
TTTGATGGTGTTGTCGTGTC+GGG 0.481584 8:+87840929 MsG0880047540.01.T01:three_prime_UTR
AGAAACCTTGCCTGCCATGC+AGG 0.481695 8:-87840857 None:intergenic
TCATAATTCATTTCTTACAA+TGG 0.489089 8:-87841075 None:intergenic
ATTCTGCTAGTGGAGAAGAC+AGG 0.503889 8:+87838282 MsG0880047540.01.T01:CDS
AAAATATGTGCGGCGAGTGC+AGG 0.505381 8:-87841215 None:intergenic
AATGTTTATGGAAGAAGCAT+AGG 0.510788 8:-87837700 None:intergenic
GGAGAAGACAGGGTTGTAGT+TGG 0.511921 8:+87838293 MsG0880047540.01.T01:CDS
CACTTAAGGAGCGTGTTTCA+GGG 0.519287 8:+87838039 MsG0880047540.01.T01:CDS
CTAGTGGAGCTGATACTACA+AGG 0.523464 8:+87838805 MsG0880047540.01.T01:CDS
TTATGGAAGAAGCATAGGAT+TGG 0.526352 8:-87837695 None:intergenic
AGAAATTGTACATGAAGAGC+GGG 0.527874 8:+87840813 MsG0880047540.01.T01:CDS
ATGAGCCTGCATGGCAGGCA+AGG 0.531331 8:+87840852 MsG0880047540.01.T01:CDS
TTAGGATCATGCTAAGTACT+TGG 0.533106 8:+87837998 MsG0880047540.01.T01:intron
GTCTGGACGAAATTGGTTGA+AGG 0.533997 8:-87837814 None:intergenic
GCGAAGACTTCTGCTATGGA+TGG 0.537747 8:+87840889 MsG0880047540.01.T01:CDS
ATCCATAGCAGAAGTCTTCG+CGG 0.537820 8:-87840887 None:intergenic
AAGAAATTGTACATGAAGAG+CGG 0.548993 8:+87840812 MsG0880047540.01.T01:CDS
ATTTGATGGTGTTGTCGTGT+CGG 0.549344 8:+87840928 MsG0880047540.01.T01:exon
TGGAGAAGATGAATGAATTG+GGG 0.552082 8:-87837622 None:intergenic
GACCGCGAAGACTTCTGCTA+TGG 0.554635 8:+87840885 MsG0880047540.01.T01:CDS
AGGCTAGATAAATGTGACAT+AGG 0.565192 8:-87838107 None:intergenic
CCATATTAACACAGTCACAC+GGG 0.572823 8:-87840955 None:intergenic
AGAGTTGCACAGAAATGGGT+TGG 0.578468 8:+87838857 MsG0880047540.01.T01:CDS
AAGTCAGTTGCTCGTAATTG+GGG 0.584670 8:+87838903 MsG0880047540.01.T01:CDS
GTCTTCCTGATGAAATTGTA+GGG 0.587974 8:+87838342 MsG0880047540.01.T01:CDS
GAAATGAAGGAAAACTAATG+AGG 0.590130 8:-87841023 None:intergenic
AAGAACATAAATCATCATAG+AGG 0.592116 8:-87838127 None:intergenic
CGAAGACTTCTGCTATGGAT+GGG 0.593997 8:+87840890 MsG0880047540.01.T01:CDS
TTCTGCTAGTGGAGAAGACA+GGG 0.600017 8:+87838283 MsG0880047540.01.T01:CDS
GCCATATTAACACAGTCACA+CGG 0.605474 8:-87840956 None:intergenic
GTTCATTGTCAATGGCAACA+TGG 0.609780 8:-87840784 None:intergenic
GAAGGAACGAACACGAAGAG+AGG 0.628307 8:-87837796 None:intergenic
ATGAGAGTGATGAGCCTGCA+TGG 0.635422 8:+87840843 MsG0880047540.01.T01:CDS
GGAGAAGATGAATGAATTGG+GGG 0.672428 8:-87837621 None:intergenic
CATATTAACACAGTCACACG+GGG 0.676884 8:-87840954 None:intergenic
TTCAGCGATTGTGATCAAAG+AGG 0.684752 8:-87837742 None:intergenic
GGAAAACTAATGAGGCAACG+TGG 0.710061 8:-87841015 None:intergenic
TAGTGGAGCTGATACTACAA+GGG 0.712956 8:+87838806 MsG0880047540.01.T01:CDS
AATTGTAGGGATGAAGCCAG+AGG 0.725736 8:+87838355 MsG0880047540.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTGAAAGAAAAAAAA+TGG - Chr8:87837870-87837889 None:intergenic 10.0%
!! AATATTCATAACTATTATAT+TGG + Chr8:87839841-87839860 MsG0880047540.01.T01:intron 10.0%
!! TTATGAATATTGAAATTATT+TGG - Chr8:87839832-87839851 None:intergenic 10.0%
!!! ATGTTTATATTTTTCTTAAT+GGG + Chr8:87840126-87840145 MsG0880047540.01.T01:intron 10.0%
!! TAAAACATTATACAATTTGA+TGG - Chr8:87838777-87838796 None:intergenic 15.0%
!! TTATATGAAAACAATTGATT+TGG - Chr8:87838511-87838530 None:intergenic 15.0%
!! TTTGTAAAAATAATCATCAA+GGG - Chr8:87841117-87841136 None:intergenic 15.0%
!!! AATATTCAGAACTTTTATAT+TGG + Chr8:87839547-87839566 MsG0880047540.01.T01:intron 15.0%
!!! ATTAGCTATTTTTATAACAA+AGG + Chr8:87838479-87838498 MsG0880047540.01.T01:intron 15.0%
!!! GATGTTTATATTTTTCTTAA+TGG + Chr8:87840125-87840144 MsG0880047540.01.T01:intron 15.0%
!!! TTTTGTAAAAATAATCATCA+AGG - Chr8:87841118-87841137 None:intergenic 15.0%
!! AAAAGAAAATCTAATCAACT+AGG - Chr8:87840482-87840501 None:intergenic 20.0%
!! AAAGAAAATCTAATCAACTA+GGG - Chr8:87840481-87840500 None:intergenic 20.0%
!! ATGCTATCTTAAAATATAAC+TGG - Chr8:87840100-87840119 None:intergenic 20.0%
!! ATGTATAAAAAAAATACCTC+TGG - Chr8:87838374-87838393 None:intergenic 20.0%
!! TATATTTGTTTATCAGTCTT+TGG + Chr8:87838207-87838226 MsG0880047540.01.T01:intron 20.0%
!! TCATAATTCATTTCTTACAA+TGG - Chr8:87841078-87841097 None:intergenic 20.0%
!! TTTACTTATGAATGAAATGA+AGG - Chr8:87841039-87841058 None:intergenic 20.0%
!! TTTCCATTGAATTAAAATCA+AGG - Chr8:87838173-87838192 None:intergenic 20.0%
!!! AAATTGTTTTCTATGATGTT+TGG - Chr8:87840536-87840555 None:intergenic 20.0%
!!! AACATCATAGAAAACAATTT+TGG + Chr8:87840536-87840555 MsG0880047540.01.T01:intron 20.0%
!!! CATGCAATATTTTGATTAAT+AGG - Chr8:87839742-87839761 None:intergenic 20.0%
!!! TAGTTCTTTTGTAAATAGTA+GGG + Chr8:87840000-87840019 MsG0880047540.01.T01:intron 20.0%
!!! TTAGTTCTTTTGTAAATAGT+AGG + Chr8:87839999-87840018 MsG0880047540.01.T01:intron 20.0%
!!! TTTCCTTGATTTTAATTCAA+TGG + Chr8:87838167-87838186 MsG0880047540.01.T01:intron 20.0%
! AACATTATACAATTTGATGG+AGG - Chr8:87838774-87838793 None:intergenic 25.0%
! AAGAAAATCTAATCAACTAG+GGG - Chr8:87840480-87840499 None:intergenic 25.0%
! AAGAACATAAATCATCATAG+AGG - Chr8:87838130-87838149 None:intergenic 25.0%
! AATACAAATGGTTAGGATTA+AGG - Chr8:87839142-87839161 None:intergenic 25.0%
! ACATTTCTTAAACCAAAAAG+TGG + Chr8:87840710-87840729 MsG0880047540.01.T01:intron 25.0%
! ATCTACAGTTCATGAAAAAA+TGG + Chr8:87840157-87840176 MsG0880047540.01.T01:intron 25.0%
! GATCAAGATCATATGAAATT+TGG - Chr8:87840230-87840249 None:intergenic 25.0%
! GTTAATGCAGAATTTGAAAA+TGG - Chr8:87837645-87837664 None:intergenic 25.0%
! TATTCATGAGTATATGAACT+AGG + Chr8:87840650-87840669 MsG0880047540.01.T01:intron 25.0%
! TGACTAAATTGAGCAAAATT+AGG - Chr8:87839442-87839461 None:intergenic 25.0%
! TGATTTATGTTCTTCATGTA+AGG + Chr8:87838136-87838155 MsG0880047540.01.T01:CDS 25.0%
! TGTACCATTGTTTATCAATT+TGG - Chr8:87840271-87840290 None:intergenic 25.0%
! TGTTCCAAATTGATAAACAA+TGG + Chr8:87840264-87840283 MsG0880047540.01.T01:intron 25.0%
! TTGAACTTGATTAGATATCA+GGG + Chr8:87839106-87839125 MsG0880047540.01.T01:intron 25.0%
! TTGCTCAATTTAGTCATTAT+TGG + Chr8:87839446-87839465 MsG0880047540.01.T01:intron 25.0%
!! AATTGTTCATACATTTGTTG+CGG + Chr8:87840584-87840603 MsG0880047540.01.T01:intron 25.0%
!! AATTTAGTTCAATACAGTTC+CGG - Chr8:87840428-87840447 None:intergenic 25.0%
!! AGACTTTCATTGTTTTCATT+AGG + Chr8:87839667-87839686 MsG0880047540.01.T01:intron 25.0%
!! ATTTTATAGTATTCTGCTAG+TGG + Chr8:87838272-87838291 MsG0880047540.01.T01:intron 25.0%
!! ATTTTCCGTATCAATACAAA+TGG - Chr8:87839154-87839173 None:intergenic 25.0%
!! GAAAATTGATAACTCTTCTA+TGG + Chr8:87838727-87838746 MsG0880047540.01.T01:intron 25.0%
!! TAAGTACCAAATCCTTTTAA+AGG - Chr8:87839082-87839101 None:intergenic 25.0%
!! TTGTATAATGTTTTACTGTC+AGG + Chr8:87838782-87838801 MsG0880047540.01.T01:intron 25.0%
!!! ATATTTTTCTTAATGGGTTG+AGG + Chr8:87840132-87840151 MsG0880047540.01.T01:intron 25.0%
!!! ATTTTGAAATCTGTTGACAA+TGG - Chr8:87840301-87840320 None:intergenic 25.0%
!!! GACTTTAATTGTTTTGAGTA+CGG + Chr8:87839379-87839398 MsG0880047540.01.T01:intron 25.0%
AAAATGAACACGTGTAAAGA+AGG + Chr8:87839169-87839188 MsG0880047540.01.T01:intron 30.0%
AAGAAATTGTACATGAAGAG+CGG + Chr8:87840812-87840831 MsG0880047540.01.T01:CDS 30.0%
AAGCACTTAAGAAACTGTTT+GGG - Chr8:87838628-87838647 None:intergenic 30.0%
AATGGAGAAGATGAATGAAT+TGG - Chr8:87837627-87837646 None:intergenic 30.0%
ATCATCCAAAACAAGCTTAA+GGG - Chr8:87838687-87838706 None:intergenic 30.0%
ATGGAGAAGATGAATGAATT+GGG - Chr8:87837626-87837645 None:intergenic 30.0%
ATTACCAGTTAGATTCTATC+AGG + Chr8:87839022-87839041 MsG0880047540.01.T01:intron 30.0%
CTTTATATATGATCCATGCT+AGG + Chr8:87839300-87839319 MsG0880047540.01.T01:intron 30.0%
CTTTCAATCACCTAATTTGA+TGG + Chr8:87840914-87840933 MsG0880047540.01.T01:exon 30.0%
GAAATGAAGGAAAACTAATG+AGG - Chr8:87841026-87841045 None:intergenic 30.0%
GTTGAACTTGATTAGATATC+AGG + Chr8:87839105-87839124 MsG0880047540.01.T01:intron 30.0%
GTTTGGATTGTGATAAAAGA+TGG + Chr8:87837951-87837970 MsG0880047540.01.T01:intron 30.0%
TAAGACTTCCTAATTATCAC+TGG - Chr8:87839766-87839785 None:intergenic 30.0%
TAAGCACTTAAGAAACTGTT+TGG - Chr8:87838629-87838648 None:intergenic 30.0%
TGATAGAATCTAACTGGTAA+TGG - Chr8:87839023-87839042 None:intergenic 30.0%
TGATTAATAGGACCCAAATT+TGG - Chr8:87839730-87839749 None:intergenic 30.0%
TTACCAGTTAGATTCTATCA+GGG + Chr8:87839023-87839042 MsG0880047540.01.T01:intron 30.0%
TTAGCTACTGAATTGCAAAA+GGG + Chr8:87837925-87837944 MsG0880047540.01.T01:intron 30.0%
TTCATGTACAATTTCTTTGC+TGG - Chr8:87840809-87840828 None:intergenic 30.0%
TTTAGCTACTGAATTGCAAA+AGG + Chr8:87837924-87837943 MsG0880047540.01.T01:intron 30.0%
TTTCTACGATGATGAATTCT+GGG + Chr8:87837767-87837786 MsG0880047540.01.T01:CDS 30.0%
! AATGTTTATGGAAGAAGCAT+AGG - Chr8:87837703-87837722 None:intergenic 30.0%
! ATCAATAAGACTCATTTTGC+AGG - Chr8:87839590-87839609 None:intergenic 30.0%
! CCTAACCATTTGTATTGATA+CGG + Chr8:87839146-87839165 MsG0880047540.01.T01:intron 30.0%
! CTTATTGATGACAGTAGTAA+TGG + Chr8:87839601-87839620 MsG0880047540.01.T01:intron 30.0%
! GATCTAGGTTTGGTTATATT+TGG + Chr8:87840363-87840382 MsG0880047540.01.T01:intron 30.0%
! GCATAAATAGACCATTTTCA+AGG - Chr8:87838978-87838997 None:intergenic 30.0%
! TCAATAAGACTCATTTTGCA+GGG - Chr8:87839589-87839608 None:intergenic 30.0%
!! GTTTCCATAAACTTGTTATC+CGG + Chr8:87840406-87840425 MsG0880047540.01.T01:intron 30.0%
!!! ATTTTAGAGTGCCTATAACT+TGG - Chr8:87840622-87840641 None:intergenic 30.0%
!!! TTTTTGGGTGCAAATGTTTA+TGG - Chr8:87837715-87837734 None:intergenic 30.0%
AAAGTCAGTTGCTCGTAATT+GGG + Chr8:87838902-87838921 MsG0880047540.01.T01:CDS 35.0%
ACAGGCAGTCAAATAAAAAC+AGG - Chr8:87840187-87840206 None:intergenic 35.0%
AGAAACAGTCAACTGCTAAA+TGG + Chr8:87838928-87838947 MsG0880047540.01.T01:intron 35.0%
AGAAATTGTACATGAAGAGC+GGG + Chr8:87840813-87840832 MsG0880047540.01.T01:CDS 35.0%
AGGATTGGAATTGAGTTCTA+AGG - Chr8:87837683-87837702 None:intergenic 35.0%
AGGCTAGATAAATGTGACAT+AGG - Chr8:87838110-87838129 None:intergenic 35.0%
AGTCTTCCTGATGAAATTGT+AGG + Chr8:87838341-87838360 MsG0880047540.01.T01:CDS 35.0%
AGTTCCGGATAACAAGTTTA+TGG - Chr8:87840413-87840432 None:intergenic 35.0%
ATGGAGTGAAAAAACTCACT+TGG - Chr8:87837851-87837870 None:intergenic 35.0%
ATTCCCTGATAGAATCTAAC+TGG - Chr8:87839029-87839048 None:intergenic 35.0%
ATTGTCATGTAGAAATCCCA+GGG - Chr8:87840681-87840700 None:intergenic 35.0%
ATTTGTGTTTATGTCCTGTC+CGG + Chr8:87838420-87838439 MsG0880047540.01.T01:intron 35.0%
CCATGTAGATTCCAAGTTAT+AGG + Chr8:87840608-87840627 MsG0880047540.01.T01:intron 35.0%
CCGTATCAATACAAATGGTT+AGG - Chr8:87839149-87839168 None:intergenic 35.0%
CCTATAACTTGGAATCTACA+TGG - Chr8:87840611-87840630 None:intergenic 35.0%
CCTCCAAATCAAAACTTATG+TGG - Chr8:87839196-87839215 None:intergenic 35.0%
CGCAACATGAAAAACATAAC+TGG - Chr8:87840055-87840074 None:intergenic 35.0%
CTTTCTACGATGATGAATTC+TGG + Chr8:87837766-87837785 MsG0880047540.01.T01:CDS 35.0%
GATCATCCAAAACAAGCTTA+AGG - Chr8:87838688-87838707 None:intergenic 35.0%
GATCGACGTTACAAATTTAC+AGG - Chr8:87840205-87840224 None:intergenic 35.0%
GATCTTGATCTCGAACATAA+TGG + Chr8:87840240-87840259 MsG0880047540.01.T01:intron 35.0%
GTCTTCCTGATGAAATTGTA+GGG + Chr8:87838342-87838361 MsG0880047540.01.T01:CDS 35.0%
GTTGTTTACATAAGCTGTCA+TGG + Chr8:87838538-87838557 MsG0880047540.01.T01:intron 35.0%
TAGGGTAACTGTCATAATCA+TGG + Chr8:87840018-87840037 MsG0880047540.01.T01:intron 35.0%
TCAATCGTACTTGTAAGTGT+TGG + Chr8:87839049-87839068 MsG0880047540.01.T01:intron 35.0%
TGGAGAAGATGAATGAATTG+GGG - Chr8:87837625-87837644 None:intergenic 35.0%
TTAGGATCATGCTAAGTACT+TGG + Chr8:87837998-87838017 MsG0880047540.01.T01:intron 35.0%
TTCATCCCTACAATTTCATC+AGG - Chr8:87838350-87838369 None:intergenic 35.0%
TTGAGCAAAATTAGGTGAGT+AGG - Chr8:87839434-87839453 None:intergenic 35.0%
TTGCATGTCCAGTGATAATT+AGG + Chr8:87839755-87839774 MsG0880047540.01.T01:intron 35.0%
TTTACCTGCTCACCAAATTT+GGG + Chr8:87839715-87839734 MsG0880047540.01.T01:intron 35.0%
! ATAAGCCTTTGTCGTTTATC+CGG - Chr8:87838442-87838461 None:intergenic 35.0%
! CTTGTGCCTTTAAAAGGATT+TGG + Chr8:87839073-87839092 MsG0880047540.01.T01:intron 35.0%
! GTTATATTTGGCTCGCAATA+GGG + Chr8:87840375-87840394 MsG0880047540.01.T01:intron 35.0%
! TGATTTGGAGGATAGTTCAT+AGG + Chr8:87839205-87839224 MsG0880047540.01.T01:intron 35.0%
! TGTTTTCACTGCCTTGAAAA+TGG + Chr8:87838964-87838983 MsG0880047540.01.T01:intron 35.0%
! TTATATTTGGCTCGCAATAG+GGG + Chr8:87840376-87840395 MsG0880047540.01.T01:intron 35.0%
! TTATGGAAGAAGCATAGGAT+TGG - Chr8:87837698-87837717 None:intergenic 35.0%
!! ATCTCTAAGACTTCGTATCA+TGG - Chr8:87839477-87839496 None:intergenic 35.0%
!! CTATGATGTTTGGTTCTTCA+TGG - Chr8:87840526-87840545 None:intergenic 35.0%
!! GAGTCAATGTAACCACTTTT+TGG - Chr8:87840725-87840744 None:intergenic 35.0%
!! TCTCTAAGACTTCGTATCAT+GGG - Chr8:87839476-87839495 None:intergenic 35.0%
!! TGTGTGATGATAATGGTGTT+TGG - Chr8:87840457-87840476 None:intergenic 35.0%
!!! CAAAGAGGTGTCGATTTTTT+GGG - Chr8:87837730-87837749 None:intergenic 35.0%
!!! CCACATAAGTTTTGATTTGG+AGG + Chr8:87839193-87839212 MsG0880047540.01.T01:intron 35.0%
!!! GGTCCACATAAGTTTTGATT+TGG + Chr8:87839190-87839209 MsG0880047540.01.T01:intron 35.0%
!!! TCAAAGAGGTGTCGATTTTT+TGG - Chr8:87837731-87837750 None:intergenic 35.0%
!!! TGTCATTTTTGTTGTGTTCG+TGG - Chr8:87837577-87837596 None:intergenic 35.0%
AAGTCAGTTGCTCGTAATTG+GGG + Chr8:87838903-87838922 MsG0880047540.01.T01:CDS 40.0%
ATGATCCATGCTAGGAGTTA+AGG + Chr8:87839308-87839327 MsG0880047540.01.T01:intron 40.0%
ATGTAACCAACTTCGTCTAG+TGG + Chr8:87839640-87839659 MsG0880047540.01.T01:intron 40.0%
CAAAGTCAGTTGCTCGTAAT+TGG + Chr8:87838901-87838920 MsG0880047540.01.T01:CDS 40.0%
CAATTTCGTCCAGACACTTA+CGG + Chr8:87837822-87837841 MsG0880047540.01.T01:CDS 40.0%
CACGACAACACCATCAAATT+AGG - Chr8:87840927-87840946 None:intergenic 40.0%
CATATTAACACAGTCACACG+GGG - Chr8:87840957-87840976 None:intergenic 40.0%
CATTGTCATGTAGAAATCCC+AGG - Chr8:87840682-87840701 None:intergenic 40.0%
CCATATTAACACAGTCACAC+GGG - Chr8:87840958-87840977 None:intergenic 40.0%
CGTGTTTGTCAAGTTCTGTT+AGG + Chr8:87837980-87837999 MsG0880047540.01.T01:intron 40.0%
CTAGAGAGTTGCACAGAAAT+GGG + Chr8:87838853-87838872 MsG0880047540.01.T01:CDS 40.0%
CTTTACCTGCTCACCAAATT+TGG + Chr8:87839714-87839733 MsG0880047540.01.T01:intron 40.0%
GAGGATAGTTCATAGGTTAG+AGG + Chr8:87839212-87839231 MsG0880047540.01.T01:intron 40.0%
GATAGCCAACTTTGTCTAGT+CGG + Chr8:87839352-87839371 MsG0880047540.01.T01:intron 40.0%
GCCATATTAACACAGTCACA+CGG - Chr8:87840959-87840978 None:intergenic 40.0%
GGAGAAGATGAATGAATTGG+GGG - Chr8:87837624-87837643 None:intergenic 40.0%
GTTCATTGTCAATGGCAACA+TGG - Chr8:87840787-87840806 None:intergenic 40.0%
TAGTGGAGCTGATACTACAA+GGG + Chr8:87838806-87838825 MsG0880047540.01.T01:CDS 40.0%
TCCATGTTTGTGTGTCTTTC+AGG + Chr8:87840743-87840762 MsG0880047540.01.T01:intron 40.0%
TGATCCATGCTAGGAGTTAA+GGG + Chr8:87839309-87839328 MsG0880047540.01.T01:intron 40.0%
TGTAACCAACTTCGTCTAGT+GGG + Chr8:87839641-87839660 MsG0880047540.01.T01:intron 40.0%
TTCAGCGATTGTGATCAAAG+AGG - Chr8:87837745-87837764 None:intergenic 40.0%
! AACAAGCTTAAGGGCATGTA+TGG - Chr8:87838678-87838697 None:intergenic 40.0%
! ACGTGAGTTTGAAGCACTTA+AGG + Chr8:87838025-87838044 MsG0880047540.01.T01:CDS 40.0%
! ACTAGACGAAGTTGGTTACA+TGG - Chr8:87839641-87839660 None:intergenic 40.0%
! ATGTTTTACTGTCAGGCTAG+TGG + Chr8:87838789-87838808 MsG0880047540.01.T01:intron 40.0%
! GAATTGCAAAAGGGTGTGTT+TGG + Chr8:87837934-87837953 MsG0880047540.01.T01:intron 40.0%
! GGTTATATTTGGCTCGCAAT+AGG + Chr8:87840374-87840393 MsG0880047540.01.T01:intron 40.0%
! TATATTTGGCTCGCAATAGG+GGG + Chr8:87840377-87840396 MsG0880047540.01.T01:intron 40.0%
! TCAACGAGACTCGTTTTGTA+GGG - Chr8:87839883-87839902 None:intergenic 40.0%
! TTTCTAGCAGACAAGTCTCT+TGG - Chr8:87839933-87839952 None:intergenic 40.0%
!! AATCTAACTGGTAATGGCAG+TGG - Chr8:87839017-87839036 None:intergenic 40.0%
!! ACATGCCCTTAAGCTTGTTT+TGG + Chr8:87838679-87838698 MsG0880047540.01.T01:intron 40.0%
!! ATTTGATGGTGTTGTCGTGT+CGG + Chr8:87840928-87840947 MsG0880047540.01.T01:exon 40.0%
!! CTTTGCTGGTTCATTGTCAA+TGG - Chr8:87840795-87840814 None:intergenic 40.0%
!! GTTGGTCTTGTGCCTTTAAA+AGG + Chr8:87839067-87839086 MsG0880047540.01.T01:intron 40.0%
AACACCCTTAACTCCTAGCA+TGG - Chr8:87839316-87839335 None:intergenic 45.0%
AAGCTGTCATGGAGAGCTTA+TGG + Chr8:87838549-87838568 MsG0880047540.01.T01:intron 45.0%
AATTGTAGGGATGAAGCCAG+AGG + Chr8:87838355-87838374 MsG0880047540.01.T01:CDS 45.0%
AGAGTTGCACAGAAATGGGT+TGG + Chr8:87838857-87838876 MsG0880047540.01.T01:CDS 45.0%
ATATGAACTAGGCAAGACCC+TGG + Chr8:87840661-87840680 MsG0880047540.01.T01:intron 45.0%
ATCCATAGCAGAAGTCTTCG+CGG - Chr8:87840890-87840909 None:intergenic 45.0%
ATTCTGCTAGTGGAGAAGAC+AGG + Chr8:87838282-87838301 MsG0880047540.01.T01:CDS 45.0%
CCCGTGTGACTGTGTTAATA+TGG + Chr8:87840955-87840974 MsG0880047540.01.T01:three_prime_UTR 45.0%
CGAAGACTTCTGCTATGGAT+GGG + Chr8:87840890-87840909 MsG0880047540.01.T01:CDS 45.0%
CGTAAGTGTCTGGACGAAAT+TGG - Chr8:87837824-87837843 None:intergenic 45.0%
CGTGTTTCAGGGAAAAAGAC+GGG + Chr8:87838050-87838069 MsG0880047540.01.T01:CDS 45.0%
CTAGTGGAGCTGATACTACA+AGG + Chr8:87838805-87838824 MsG0880047540.01.T01:CDS 45.0%
CTTCTCCGACTAGACAAAGT+TGG - Chr8:87839360-87839379 None:intergenic 45.0%
GCCTGAAAGACACACAAACA+TGG - Chr8:87840747-87840766 None:intergenic 45.0%
GCGTGTTTCAGGGAAAAAGA+CGG + Chr8:87838049-87838068 MsG0880047540.01.T01:CDS 45.0%
GCTAGAGAGTTGCACAGAAA+TGG + Chr8:87838852-87838871 MsG0880047540.01.T01:CDS 45.0%
GGAAAACTAATGAGGCAACG+TGG - Chr8:87841018-87841037 None:intergenic 45.0%
GTCTGGACGAAATTGGTTGA+AGG - Chr8:87837817-87837836 None:intergenic 45.0%
TAGCAGACAAGTCTCTTGGA+AGG - Chr8:87839929-87839948 None:intergenic 45.0%
TATGAACTAGGCAAGACCCT+GGG + Chr8:87840662-87840681 MsG0880047540.01.T01:intron 45.0%
TTCTGCTAGTGGAGAAGACA+GGG + Chr8:87838283-87838302 MsG0880047540.01.T01:CDS 45.0%
! AACTGGCTTCGATCTAGGTT+TGG + Chr8:87840353-87840372 MsG0880047540.01.T01:intron 45.0%
! ATATTTGGCTCGCAATAGGG+GGG + Chr8:87840378-87840397 MsG0880047540.01.T01:intron 45.0%
! CACTTAAGGAGCGTGTTTCA+GGG + Chr8:87838039-87838058 MsG0880047540.01.T01:CDS 45.0%
! CTAGGGGTGTGTGATGATAA+TGG - Chr8:87840464-87840483 None:intergenic 45.0%
! CTTTTCCCACTAGACGAAGT+TGG - Chr8:87839649-87839668 None:intergenic 45.0%
! GGCTGGAGTTTTCTATCACA+AGG - Chr8:87840330-87840349 None:intergenic 45.0%
! GTCAACGAGACTCGTTTTGT+AGG - Chr8:87839884-87839903 None:intergenic 45.0%
!! TTTGATGGTGTTGTCGTGTC+GGG + Chr8:87840929-87840948 MsG0880047540.01.T01:three_prime_UTR 45.0%
ACCTAGATCGAAGCCAGTTC+TGG - Chr8:87840352-87840371 None:intergenic 50.0%
ACTTGGACTCCGTAAGTGTC+TGG - Chr8:87837834-87837853 None:intergenic 50.0%
AGAAAACTCCAGCCCAGAAC+TGG + Chr8:87840336-87840355 MsG0880047540.01.T01:intron 50.0%
ATGAGAGTGATGAGCCTGCA+TGG + Chr8:87840843-87840862 MsG0880047540.01.T01:CDS 50.0%
CCTAGATCGAAGCCAGTTCT+GGG - Chr8:87840351-87840370 None:intergenic 50.0%
CCTGTCCGGATAAACGACAA+AGG + Chr8:87838434-87838453 MsG0880047540.01.T01:intron 50.0%
GAAGGAACGAACACGAAGAG+AGG - Chr8:87837799-87837818 None:intergenic 50.0%
GACAAGTCTCTTGGAAGGCT+TGG - Chr8:87839924-87839943 None:intergenic 50.0%
GCGAAGACTTCTGCTATGGA+TGG + Chr8:87840889-87840908 MsG0880047540.01.T01:CDS 50.0%
GGAGAAGACAGGGTTGTAGT+TGG + Chr8:87838293-87838312 MsG0880047540.01.T01:CDS 50.0%
! AGGACCCAAATTTGGTGAGC+AGG - Chr8:87839722-87839741 None:intergenic 50.0%
! CCTTTGTCGTTTATCCGGAC+AGG - Chr8:87838437-87838456 None:intergenic 50.0%
! GCACTTAAGGAGCGTGTTTC+AGG + Chr8:87838038-87838057 MsG0880047540.01.T01:CDS 50.0%
AGAAACCTTGCCTGCCATGC+AGG - Chr8:87840860-87840879 None:intergenic 55.0%
GACCGCGAAGACTTCTGCTA+TGG + Chr8:87840885-87840904 MsG0880047540.01.T01:CDS 55.0%
! CCCAGAACTGGCTTCGATCT+AGG + Chr8:87840348-87840367 MsG0880047540.01.T01:intron 55.0%
! GTCTCTTGGAAGGCTTGGTC+AGG - Chr8:87839919-87839938 None:intergenic 55.0%
! TTGGAAGGCTTGGTCAGGAG+AGG - Chr8:87839914-87839933 None:intergenic 55.0%
ATGAGCCTGCATGGCAGGCA+AGG + Chr8:87840852-87840871 MsG0880047540.01.T01:CDS 60.0%
GAGTGATGAGCCTGCATGGC+AGG + Chr8:87840847-87840866 MsG0880047540.01.T01:CDS 60.0%
GGCTCGCAATAGGGGGGATT+CGG + Chr8:87840384-87840403 MsG0880047540.01.T01:intron 60.0%
!! GATCGAAGCCAGTTCTGGGC+TGG - Chr8:87840347-87840366 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 87837553 87841236 87837553 ID=MsG0880047540.01;Name=MsG0880047540.01
Chr8 mRNA 87837553 87841236 87837553 ID=MsG0880047540.01.T01;Parent=MsG0880047540.01;Name=MsG0880047540.01.T01;_AED=0.35;_eAED=0.35;_QI=38|1|1|1|1|1|5|308|265
Chr8 exon 87837553 87837851 87837553 ID=MsG0880047540.01.T01:exon:18566;Parent=MsG0880047540.01.T01
Chr8 exon 87838002 87838157 87838002 ID=MsG0880047540.01.T01:exon:18567;Parent=MsG0880047540.01.T01
Chr8 exon 87838281 87838376 87838281 ID=MsG0880047540.01.T01:exon:18568;Parent=MsG0880047540.01.T01
Chr8 exon 87838804 87838924 87838804 ID=MsG0880047540.01.T01:exon:18569;Parent=MsG0880047540.01.T01
Chr8 exon 87840765 87841236 87840765 ID=MsG0880047540.01.T01:exon:18570;Parent=MsG0880047540.01.T01
Chr8 five_prime_UTR 87837553 87837590 87837553 ID=MsG0880047540.01.T01:five_prime_utr;Parent=MsG0880047540.01.T01
Chr8 CDS 87837591 87837851 87837591 ID=MsG0880047540.01.T01:cds;Parent=MsG0880047540.01.T01
Chr8 CDS 87838002 87838157 87838002 ID=MsG0880047540.01.T01:cds;Parent=MsG0880047540.01.T01
Chr8 CDS 87838281 87838376 87838281 ID=MsG0880047540.01.T01:cds;Parent=MsG0880047540.01.T01
Chr8 CDS 87838804 87838924 87838804 ID=MsG0880047540.01.T01:cds;Parent=MsG0880047540.01.T01
Chr8 CDS 87840765 87840928 87840765 ID=MsG0880047540.01.T01:cds;Parent=MsG0880047540.01.T01
Chr8 three_prime_UTR 87840929 87841236 87840929 ID=MsG0880047540.01.T01:three_prime_utr;Parent=MsG0880047540.01.T01
Gene Sequence

>MsG0880047540.01.T01

ATGACACTCATTTCTTCACTCTGTTCTTTTCCCCCAATTCATTCATCTTCTCCATTTTCAAATTCTGCATTAACATGTTCAACTTCTAACCTTAGAACTCAATTCCAATCCTATGCTTCTTCCATAAACATTTGCACCCAAAAAATCGACACCTCTTTGATCACAATCGCTGAATCTTTCTACGATGATGAATTCTGGGCTGCTTCCTCTCTTCGTGTTCGTTCCTTCAACCAATTTCGTCCAGACACTTACGGAGTCCAAGATCATGCTAAGTACTTGGCTGAACGTGAGTTTGAAGCACTTAAGGAGCGTGTTTCAGGGAAAAAGACGGGCTTTAGAAGAGTTTCTTGCATAAATGCTTCTCTTCCTATGTCACATTTATCTAGCCTCTATGATGATTTATGTTCTTCATGTAAGTATTCTGCTAGTGGAGAAGACAGGGTTGTAGTTGGTTCTCTTGATCTTAATCAGTGCTTGAGTCTTCCTGATGAAATTGTAGGGATGAAGCCAGAGGCTAGTGGAGCTGATACTACAAGGGCGTATCTTAGTAATGTATGTGTTGCTAGAGAGTTGCACAGAAATGGGTTGGCATATGAACTTCTTGAAAAGTCAAAGTCAGTTGCTCGTAATTGGGGCATAACAGATTTGTACGTCCATGTTGCCATTGACAATGAACCAGCAAAGAAATTGTACATGAAGAGCGGGTTTGTCTATGAGAGTGATGAGCCTGCATGGCAGGCAAGGTTTCTTGATCGACCGCGAAGACTTCTGCTATGGATGGGTCTTTCAATCACCTAA

Protein sequence

>MsG0880047540.01.T01

MTLISSLCSFPPIHSSSPFSNSALTCSTSNLRTQFQSYASSINICTQKIDTSLITIAESFYDDEFWAASSLRVRSFNQFRPDTYGVQDHAKYLAEREFEALKERVSGKKTGFRRVSCINASLPMSHLSSLYDDLCSSCKYSASGEDRVVVGSLDLNQCLSLPDEIVGMKPEASGADTTRAYLSNVCVARELHRNGLAYELLEKSKSVARNWGITDLYVHVAIDNEPAKKLYMKSGFVYESDEPAWQARFLDRPRRLLLWMGLSIT*