AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021312.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021312.01.T01 MTR_4g071330 81.818 198 33 2 1 197 1 196 3.95e-86 262
MsG0480021312.01.T01 MTR_4g071330 79.348 92 1 1 291 364 194 285 9.83e-40 142
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021312.01.T01 AT2G21350 67.273 55 18 0 291 345 168 222 2.53e-18 83.2
MsG0480021312.01.T01 AT2G21350 34.826 201 93 9 2 197 3 170 1.15e-13 70.1
MsG0480021312.01.T01 AT4G39040 63.462 52 19 0 146 197 153 204 1.91e-13 70.5
MsG0480021312.01.T01 AT4G39040 72.500 40 11 0 291 330 202 241 2.32e-11 64.3
MsG0480021312.01.T01 AT4G39040 63.462 52 19 0 146 197 153 204 2.29e-13 70.5
MsG0480021312.01.T01 AT4G39040 72.500 40 11 0 291 330 202 241 2.73e-11 64.3

Find 98 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCCGGGATTGTCGATTTC+TGG 0.153329 4:+56606062 MsG0480021312.01.T01:three_prime_UTR
TTCAATTTCGTCTTCTTCTA+TGG 0.227363 4:-56603820 None:intergenic
CGAACCCCGCCGTGATGATT+TGG 0.238788 4:-56605898 None:intergenic
TTGTCATTGATGTTAATTAT+TGG 0.245542 4:+56604400 MsG0480021312.01.T01:CDS
CTTAAGTGTTGCACCTAAAA+TGG 0.250433 4:+56605148 MsG0480021312.01.T01:CDS
GACTAGGCCTGTATAAAATA+AGG 0.255349 4:-56605687 None:intergenic
TGGGTCTTATGCACATAGTT+TGG 0.267978 4:+56604013 MsG0480021312.01.T01:CDS
CCTCTTTCTTCCTTCGTTGA+AGG 0.270970 4:+56603783 MsG0480021312.01.T01:CDS
GGGTCTTATGCACATAGTTT+GGG 0.294992 4:+56604014 MsG0480021312.01.T01:CDS
ATGAAGTCTTAAATTGAGTT+TGG 0.322635 4:+56606140 MsG0480021312.01.T01:three_prime_UTR
TAAGAAGTTCATTAGCTTCA+AGG 0.331752 4:-56604109 None:intergenic
TGAAGCTAATGAACTTCTTA+AGG 0.332588 4:+56604112 MsG0480021312.01.T01:CDS
AAAGAGTCTCATTCTTGTTC+AGG 0.360127 4:-56605988 None:intergenic
GAACCCCGCCGTGATGATTT+GGG 0.368695 4:-56605897 None:intergenic
GAGAGAAGAGAGATTGAAAC+TGG 0.370203 4:+56603953 MsG0480021312.01.T01:CDS
GCCACTGGTTTGACTGTCAC+TGG 0.375419 4:+56605110 MsG0480021312.01.T01:CDS
GACAACTTTCCTTTGGCCAC+TGG 0.377347 4:+56605095 MsG0480021312.01.T01:CDS
TGGAGAATGTTGCTTCCATT+TGG 0.384947 4:+56606267 MsG0480021312.01.T01:three_prime_UTR
ACACAATTGGTGGGTAAGTC+TGG 0.392170 4:+56604050 MsG0480021312.01.T01:CDS
TACTGGCAGATGAGAATTCC+GGG 0.399607 4:+56606047 MsG0480021312.01.T01:three_prime_UTR
GTACTGGCAGATGAGAATTC+CGG 0.402233 4:+56606046 MsG0480021312.01.T01:three_prime_UTR
TGTGTTTGACAACTTTCCTT+TGG 0.408812 4:+56605088 MsG0480021312.01.T01:CDS
GGAAGAAAGAGGAGGGATGT+AGG 0.418907 4:-56603772 None:intergenic
AAATAAGGGTTCGACCAATC+TGG 0.423091 4:-56605672 None:intergenic
CATGGAAAGCGAGAGGAAAT+AGG 0.424887 4:+56605922 MsG0480021312.01.T01:CDS
TAATGAACTTCTTAAGGTAA+TGG 0.427781 4:+56604118 MsG0480021312.01.T01:CDS
CCAGTACAATGTCCAGTCCT+TGG 0.439188 4:-56606030 None:intergenic
ACTGAAAGCAGTAATAAGAT+TGG 0.440308 4:-56604081 None:intergenic
TCAGTGACCGTTGGCCAGAT+TGG 0.443479 4:+56605658 MsG0480021312.01.T01:CDS
CGAAGGGTAATATTGGAAGA+AGG 0.461644 4:-56603666 None:intergenic
CTTTCCTTCACACTCATACT+CGG 0.467872 4:-56603981 None:intergenic
CTATTTCCTCTCGCTTTCCA+TGG 0.468374 4:-56605921 None:intergenic
CAGTACAATGTCCAGTCCTT+GGG 0.469095 4:-56606029 None:intergenic
GGAACACTTGTATGAGGTTG+TGG 0.470746 4:+56606090 MsG0480021312.01.T01:three_prime_UTR
TCTTCTCTCTTTGTCACCAA+TGG 0.477641 4:-56603939 None:intergenic
AAGACTTCATCCTCTAGCTC+TGG 0.479939 4:-56606127 None:intergenic
GCCTAGTCTCTCCAAATTGA+AGG 0.481817 4:+56605702 MsG0480021312.01.T01:CDS
GGATAAGAAATATGGTGAAC+GGG 0.482122 4:-56603721 None:intergenic
CTGAAAGCAGTAATAAGATT+GGG 0.482185 4:-56604080 None:intergenic
ACTAGGCCTGTATAAAATAA+GGG 0.483984 4:-56605686 None:intergenic
ATTGAGTTTGGTTTATTCTG+TGG 0.487591 4:+56606152 MsG0480021312.01.T01:three_prime_UTR
ATCTTATTCTAGTGTGGAAG+TGG 0.492419 4:+56605040 MsG0480021312.01.T01:CDS
AAAATACACGGGAGTTGTCC+AGG 0.506780 4:+56605592 MsG0480021312.01.T01:CDS
AGAAGATGTTGTGAAGCAGT+TGG 0.507699 4:+56605621 MsG0480021312.01.T01:CDS
ACTCTCATCCACCATCACTT+TGG 0.511098 4:-56603901 None:intergenic
GATTGTCGATTTCTGGATCA+AGG 0.513618 4:+56606069 MsG0480021312.01.T01:three_prime_UTR
AAGCAGTTGGAAGAAGCAAC+TGG 0.518116 4:+56605634 MsG0480021312.01.T01:CDS
TTTGAGAAATGAAATGAAAG+AGG 0.521063 4:-56603631 None:intergenic
AGAACCCAAATCATCACGGC+GGG 0.527975 4:+56605893 MsG0480021312.01.T01:CDS
AAAGCTTAGCACACAATTGG+TGG 0.528041 4:+56604040 MsG0480021312.01.T01:CDS
CCAAGGACTGGACATTGTAC+TGG 0.532343 4:+56606030 MsG0480021312.01.T01:three_prime_UTR
GTGAAGGAAAGGAAAGAACT+TGG 0.535787 4:+56603993 MsG0480021312.01.T01:CDS
AATGTCCAGTCCTTGGGTAT+CGG 0.547091 4:-56606023 None:intergenic
GATCAAGGAACACTTGTATG+AGG 0.553111 4:+56606084 MsG0480021312.01.T01:three_prime_UTR
TGAAACTACATCGTCGCCAT+TGG 0.556171 4:+56603923 MsG0480021312.01.T01:CDS
TTGGAAGAAGGAATAAAGAG+AGG 0.559901 4:-56603654 None:intergenic
ACGGTAACGGCGGTTGTGAA+CGG 0.569654 4:-56603596 None:intergenic
TGGATAAGAAATATGGTGAA+CGG 0.571212 4:-56603722 None:intergenic
GAAGATGACGGTGACGGTAA+CGG 0.572355 4:-56603609 None:intergenic
TGAAGTTGAACCTTCAACGA+AGG 0.575257 4:-56603793 None:intergenic
ACATACCGATACCCAAGGAC+TGG 0.576045 4:+56606018 MsG0480021312.01.T01:three_prime_UTR
CGAGTATGAGTGTGAAGGAA+AGG 0.583198 4:+56603982 MsG0480021312.01.T01:CDS
GTGGCATTGCATGCAAAGCA+TGG 0.585566 4:+56605059 MsG0480021312.01.T01:CDS
CATCACGGCGGGGTTCGCCA+TGG 0.588212 4:+56605904 MsG0480021312.01.T01:CDS
GATCCAGAAATCGACAATCC+CGG 0.588392 4:-56606065 None:intergenic
GGTCTTATGCACATAGTTTG+GGG 0.589830 4:+56604015 MsG0480021312.01.T01:CDS
CCTTCAACGAAGGAAGAAAG+AGG 0.590228 4:-56603783 None:intergenic
CATGCAATCTTATTCTAGTG+TGG 0.591192 4:+56605034 MsG0480021312.01.T01:CDS
ACAACATCTTCTAACTCACC+TGG 0.594667 4:-56605610 None:intergenic
GTCACGCAGCTGCTGCAAAG+TGG 0.603914 4:+56604995 MsG0480021312.01.T01:intron
CATTTACAGATTAAAATACA+CGG 0.607337 4:+56605580 MsG0480021312.01.T01:intron
GTTTCGTCGAAGGATTGTTG+TGG 0.608084 4:+56605958 MsG0480021312.01.T01:three_prime_UTR
TAAACACGTAGTTTCGTCGA+AGG 0.615826 4:+56605948 MsG0480021312.01.T01:exon
TTATGAAGATACCAAAGTGA+TGG 0.617568 4:+56603890 MsG0480021312.01.T01:CDS
TGAAGATACCAAAGTGATGG+TGG 0.621891 4:+56603893 MsG0480021312.01.T01:CDS
ACAGTCAAACCAGTGGCCAA+AGG 0.625803 4:-56605104 None:intergenic
ACCTTCAATTTGGAGAGACT+AGG 0.627384 4:-56605703 None:intergenic
AAGCTTAGCACACAATTGGT+GGG 0.629215 4:+56604041 MsG0480021312.01.T01:CDS
GCAACTGGTTCAGTGACCGT+TGG 0.632856 4:+56605649 MsG0480021312.01.T01:CDS
CAACGAAGGAAGAAAGAGGA+GGG 0.633433 4:-56603779 None:intergenic
ATTTACAGATTAAAATACAC+GGG 0.633460 4:+56605581 MsG0480021312.01.T01:intron
GAGAACGAAGAGGAGGTGAG+AGG 0.637007 4:-56603574 None:intergenic
TGAAGGAAAGGAAAGAACTT+GGG 0.637854 4:+56603994 MsG0480021312.01.T01:CDS
AAAGAGGAAGATGACGGTGA+CGG 0.641972 4:-56603615 None:intergenic
TCAACGAAGGAAGAAAGAGG+AGG 0.642176 4:-56603780 None:intergenic
TGCTTTGTGACCAGAGCTAG+AGG 0.644427 4:+56606117 MsG0480021312.01.T01:three_prime_UTR
GAAATGAAAGAGGAAGATGA+CGG 0.644772 4:-56603621 None:intergenic
AACAAGAACCCAAATCATCA+CGG 0.648444 4:+56605889 MsG0480021312.01.T01:CDS
GGTTCGACCAATCTGGCCAA+CGG 0.657872 4:-56605665 None:intergenic
GGTTCGCCATGGAAAGCGAG+AGG 0.664200 4:+56605915 MsG0480021312.01.T01:CDS
TGCGTACATACCGATACCCA+AGG 0.670314 4:+56606013 MsG0480021312.01.T01:three_prime_UTR
GTGAACGGAGAACGAAGAGG+AGG 0.684070 4:-56603581 None:intergenic
TCCAGTGACAGTCAAACCAG+TGG 0.687545 4:-56605111 None:intergenic
GAACCCAAATCATCACGGCG+GGG 0.716097 4:+56605894 MsG0480021312.01.T01:CDS
GATGACGGTGACGGTAACGG+CGG 0.733207 4:-56603606 None:intergenic
GTTGTGAACGGAGAACGAAG+AGG 0.745180 4:-56603584 None:intergenic
AGTGCCGAGTATGAGTGTGA+AGG 0.745772 4:+56603977 MsG0480021312.01.T01:CDS
AAGAACCCAAATCATCACGG+CGG 0.750849 4:+56605892 MsG0480021312.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTATTTATGTTTTTTATTT+GGG + Chr4:56604140-56604159 MsG0480021312.01.T01:CDS 10.0%
!!! ATTAAATTGCAATTTTTTCA+TGG + Chr4:56606247-56606266 MsG0480021312.01.T01:three_prime_UTR 15.0%
!!! GGTTATTTATGTTTTTTATT+TGG + Chr4:56604139-56604158 MsG0480021312.01.T01:CDS 15.0%
!!! TGTTATTGTTTGATATATTT+TGG + Chr4:56604205-56604224 MsG0480021312.01.T01:intron 15.0%
!!! TTATAATCATCTTTATTTGA+AGG + Chr4:56605308-56605327 MsG0480021312.01.T01:intron 15.0%
!! ATAGATACTGAGAATAATTT+AGG - Chr4:56604844-56604863 None:intergenic 20.0%
!! ATTTACAGATTAAAATACAC+GGG + Chr4:56605581-56605600 MsG0480021312.01.T01:intron 20.0%
!! CATTTACAGATTAAAATACA+CGG + Chr4:56605580-56605599 MsG0480021312.01.T01:intron 20.0%
!! TTGTCATTGATGTTAATTAT+TGG + Chr4:56604400-56604419 MsG0480021312.01.T01:CDS 20.0%
!!! ATCAATATATAGACCATTTT+AGG - Chr4:56605164-56605183 None:intergenic 20.0%
!!! ATTAATTTGTACTTGCAATT+TGG + Chr4:56605553-56605572 MsG0480021312.01.T01:intron 20.0%
!!! GATATATTTTGGTAATACAT+GGG + Chr4:56604216-56604235 MsG0480021312.01.T01:intron 20.0%
!!! TGATATATTTTGGTAATACA+TGG + Chr4:56604215-56604234 MsG0480021312.01.T01:intron 20.0%
! AAAGTGAATGCAAATTCATT+AGG + Chr4:56604456-56604475 MsG0480021312.01.T01:intron 25.0%
! AAGAAAAGAAGAAACAAGTT+CGG + Chr4:56605728-56605747 MsG0480021312.01.T01:intron 25.0%
! AATAGCAGATTGTTTCAATT+CGG + Chr4:56604512-56604531 MsG0480021312.01.T01:intron 25.0%
! AATTACAGATGCTAAACATA+AGG - Chr4:56604352-56604371 None:intergenic 25.0%
! ACAAAGCAATATACTTTCAT+TGG + Chr4:56605412-56605431 MsG0480021312.01.T01:intron 25.0%
! AGATGGTATTTAACAACATT+GGG + Chr4:56604661-56604680 MsG0480021312.01.T01:intron 25.0%
! ATGAAGTCTTAAATTGAGTT+TGG + Chr4:56606140-56606159 MsG0480021312.01.T01:three_prime_UTR 25.0%
! CTGAGAATAATTTAGGAAAA+TGG - Chr4:56604837-56604856 None:intergenic 25.0%
! TAATGAACTTCTTAAGGTAA+TGG + Chr4:56604118-56604137 MsG0480021312.01.T01:CDS 25.0%
! TAGATGGTATTTAACAACAT+TGG + Chr4:56604660-56604679 MsG0480021312.01.T01:intron 25.0%
! TTGTTAAATACCATCTATAG+TGG - Chr4:56604657-56604676 None:intergenic 25.0%
! TTTGAGAAATGAAATGAAAG+AGG - Chr4:56603634-56603653 None:intergenic 25.0%
!! AAATTTTCGAAGGGTAATAT+TGG - Chr4:56603676-56603695 None:intergenic 25.0%
!! GATTTAGCAAGAGTATATTT+AGG + Chr4:56604719-56604738 MsG0480021312.01.T01:intron 25.0%
!! TAATCATCTTTATTTGAAGG+AGG + Chr4:56605311-56605330 MsG0480021312.01.T01:intron 25.0%
!! TTTAGTTCACTCTTATCAAT+TGG - Chr4:56605393-56605412 None:intergenic 25.0%
!!! ACTTGTGCATTTTAATGATT+AGG - Chr4:56605505-56605524 None:intergenic 25.0%
!!! CTGAAAAATGTCTTTGTTTT+CGG + Chr4:56604173-56604192 MsG0480021312.01.T01:CDS 25.0%
AACGAAGACTACTAATAAAC+AGG + Chr4:56605776-56605795 MsG0480021312.01.T01:intron 30.0%
ACAAAATTATTGTCAACCAG+TGG - Chr4:56604568-56604587 None:intergenic 30.0%
ACGAAGACTACTAATAAACA+GGG + Chr4:56605777-56605796 MsG0480021312.01.T01:intron 30.0%
ACTAGGCCTGTATAAAATAA+GGG - Chr4:56605689-56605708 None:intergenic 30.0%
ACTGAAAGCAGTAATAAGAT+TGG - Chr4:56604084-56604103 None:intergenic 30.0%
AGAGTATATTTAGGAACTAG+TGG + Chr4:56604728-56604747 MsG0480021312.01.T01:intron 30.0%
ATTTGTACTTGCAATTTGGA+TGG + Chr4:56605557-56605576 MsG0480021312.01.T01:intron 30.0%
CAATACAAATAAATGGCCTT+GGG + Chr4:56604684-56604703 MsG0480021312.01.T01:intron 30.0%
CATTGGGCAATACAAATAAA+TGG + Chr4:56604677-56604696 MsG0480021312.01.T01:intron 30.0%
CTGAAAGCAGTAATAAGATT+GGG - Chr4:56604083-56604102 None:intergenic 30.0%
GAAGAGATCAAAATAATTCG+AGG - Chr4:56605829-56605848 None:intergenic 30.0%
TATAACTTCAAGTGTCATGT+TGG - Chr4:56604802-56604821 None:intergenic 30.0%
TGAAGCTAATGAACTTCTTA+AGG + Chr4:56604112-56604131 MsG0480021312.01.T01:CDS 30.0%
TGGATAAGAAATATGGTGAA+CGG - Chr4:56603725-56603744 None:intergenic 30.0%
TGTAAAACGATTGTTTGAGT+TGG + Chr4:56604919-56604938 MsG0480021312.01.T01:intron 30.0%
TTATGAAGATACCAAAGTGA+TGG + Chr4:56603890-56603909 MsG0480021312.01.T01:CDS 30.0%
TTCAATTTCGTCTTCTTCTA+TGG - Chr4:56603823-56603842 None:intergenic 30.0%
! AATACAAATAAATGGCCTTG+GGG + Chr4:56604685-56604704 MsG0480021312.01.T01:intron 30.0%
! ATTGAGTTTGGTTTATTCTG+TGG + Chr4:56606152-56606171 MsG0480021312.01.T01:three_prime_UTR 30.0%
! CTTTTCTTCTACCTTCAATT+TGG - Chr4:56605716-56605735 None:intergenic 30.0%
! GGTCTATATATTGATTAGCT+GGG + Chr4:56605169-56605188 MsG0480021312.01.T01:intron 30.0%
! TAAGAAGTTCATTAGCTTCA+AGG - Chr4:56604112-56604131 None:intergenic 30.0%
! TGGTCTATATATTGATTAGC+TGG + Chr4:56605168-56605187 MsG0480021312.01.T01:intron 30.0%
!! AACGTGTTATTGTTTTCATG+TGG + Chr4:56604316-56604335 MsG0480021312.01.T01:intron 30.0%
!! TGTGCATTTTAATGATTAGG+AGG - Chr4:56605502-56605521 None:intergenic 30.0%
!!! AAATGTCTTTGTTTTCGGTT+TGG + Chr4:56604178-56604197 MsG0480021312.01.T01:intron 30.0%
!!! GTAGGTGTATGTGTTTTTTA+AGG + Chr4:56604256-56604275 MsG0480021312.01.T01:intron 30.0%
AAAGAGTCTCATTCTTGTTC+AGG - Chr4:56605991-56606010 None:intergenic 35.0%
AACAAGAACCCAAATCATCA+CGG + Chr4:56605889-56605908 MsG0480021312.01.T01:CDS 35.0%
ACATACGCAATCATCAAACA+AGG - Chr4:56604868-56604887 None:intergenic 35.0%
ACCGACACTTTAGATTGAAA+GGG + Chr4:56604766-56604785 MsG0480021312.01.T01:intron 35.0%
AGACTACTAATAAACAGGGT+AGG + Chr4:56605781-56605800 MsG0480021312.01.T01:intron 35.0%
AGAGAAAACACACGATGAAA+AGG - Chr4:56605476-56605495 None:intergenic 35.0%
AGATGCAAAGATTGTGAACA+AGG - Chr4:56605532-56605551 None:intergenic 35.0%
ATCTTATTCTAGTGTGGAAG+TGG + Chr4:56605040-56605059 MsG0480021312.01.T01:CDS 35.0%
ATGCCAGAAAAAATACACTC+TGG - Chr4:56605288-56605307 None:intergenic 35.0%
CAAGAACATTAGTGAAGCAT+AGG - Chr4:56605851-56605870 None:intergenic 35.0%
CACGATGAAAAGGATATGTA+TGG - Chr4:56605466-56605485 None:intergenic 35.0%
CATGCAATCTTATTCTAGTG+TGG + Chr4:56605034-56605053 MsG0480021312.01.T01:CDS 35.0%
CTAATAAACAGGGTAGGTTA+TGG + Chr4:56605787-56605806 MsG0480021312.01.T01:intron 35.0%
GAAAAAGCTTAGCACACAAT+TGG + Chr4:56604037-56604056 MsG0480021312.01.T01:CDS 35.0%
GAAATGAAAGAGGAAGATGA+CGG - Chr4:56603624-56603643 None:intergenic 35.0%
GACTAGGCCTGTATAAAATA+AGG - Chr4:56605690-56605709 None:intergenic 35.0%
GCAATACAAATAAATGGCCT+TGG + Chr4:56604683-56604702 MsG0480021312.01.T01:intron 35.0%
GGATAAGAAATATGGTGAAC+GGG - Chr4:56603724-56603743 None:intergenic 35.0%
TGAAGGAAAGGAAAGAACTT+GGG + Chr4:56603994-56604013 MsG0480021312.01.T01:CDS 35.0%
TGCGTGATTCAATTATGTCT+CGG + Chr4:56605242-56605261 MsG0480021312.01.T01:intron 35.0%
TGTGTTTGACAACTTTCCTT+TGG + Chr4:56605088-56605107 MsG0480021312.01.T01:CDS 35.0%
TTGGAAGAAGGAATAAAGAG+AGG - Chr4:56603657-56603676 None:intergenic 35.0%
! ACCCTTTCAATCTAAAGTGT+CGG - Chr4:56604770-56604789 None:intergenic 35.0%
! ATACAAATAAATGGCCTTGG+GGG + Chr4:56604686-56604705 MsG0480021312.01.T01:intron 35.0%
! CGTTTTACATACATCAAGTC+TGG - Chr4:56604908-56604927 None:intergenic 35.0%
! CTTAAGTGTTGCACCTAAAA+TGG + Chr4:56605148-56605167 MsG0480021312.01.T01:CDS 35.0%
!! AAATATGGTGAACGGGTTTT+TGG - Chr4:56603717-56603736 None:intergenic 35.0%
!! AACGATTGTTTGAGTTGGTT+TGG + Chr4:56604924-56604943 MsG0480021312.01.T01:intron 35.0%
!! ACAAGTTCGGAAACTTTTTC+TGG + Chr4:56605741-56605760 MsG0480021312.01.T01:intron 35.0%
!! TTTTGGTAATACATGGGAAG+AGG + Chr4:56604222-56604241 MsG0480021312.01.T01:intron 35.0%
!!! ACTCCAGAGTGTATTTTTTC+TGG + Chr4:56605282-56605301 MsG0480021312.01.T01:intron 35.0%
!!! GTCGAACCCTTATTTTATAC+AGG + Chr4:56605680-56605699 MsG0480021312.01.T01:CDS 35.0%
AAAGCTTAGCACACAATTGG+TGG + Chr4:56604040-56604059 MsG0480021312.01.T01:CDS 40.0%
AAATAAGGGTTCGACCAATC+TGG - Chr4:56605675-56605694 None:intergenic 40.0%
AAGCTTAGCACACAATTGGT+GGG + Chr4:56604041-56604060 MsG0480021312.01.T01:CDS 40.0%
AATGCCAGAGTTGTCAATTG+TGG + Chr4:56604480-56604499 MsG0480021312.01.T01:intron 40.0%
ACAACATCTTCTAACTCACC+TGG - Chr4:56605613-56605632 None:intergenic 40.0%
ACCTTCAATTTGGAGAGACT+AGG - Chr4:56605706-56605725 None:intergenic 40.0%
AGAAGATGTTGTGAAGCAGT+TGG + Chr4:56605621-56605640 MsG0480021312.01.T01:CDS 40.0%
CACCGACACTTTAGATTGAA+AGG + Chr4:56604765-56604784 MsG0480021312.01.T01:intron 40.0%
CGAAGGGTAATATTGGAAGA+AGG - Chr4:56603669-56603688 None:intergenic 40.0%
CGTGATTCAATTATGTCTCG+GGG + Chr4:56605244-56605263 MsG0480021312.01.T01:intron 40.0%
CTATCCACAATTGACAACTC+TGG - Chr4:56604487-56604506 None:intergenic 40.0%
CTTTCCTTCACACTCATACT+CGG - Chr4:56603984-56604003 None:intergenic 40.0%
GAGAGAAGAGAGATTGAAAC+TGG + Chr4:56603953-56603972 MsG0480021312.01.T01:CDS 40.0%
GATCAAGGAACACTTGTATG+AGG + Chr4:56606084-56606103 MsG0480021312.01.T01:three_prime_UTR 40.0%
GCGTGATTCAATTATGTCTC+GGG + Chr4:56605243-56605262 MsG0480021312.01.T01:intron 40.0%
GTGAAGGAAAGGAAAGAACT+TGG + Chr4:56603993-56604012 MsG0480021312.01.T01:CDS 40.0%
GTGATTCAATTATGTCTCGG+GGG + Chr4:56605245-56605264 MsG0480021312.01.T01:intron 40.0%
TAAACACGTAGTTTCGTCGA+AGG + Chr4:56605948-56605967 MsG0480021312.01.T01:exon 40.0%
TACATGGGAAGAGGAATTTG+AGG + Chr4:56604231-56604250 MsG0480021312.01.T01:intron 40.0%
TCAAGTGTCATGTTGGACAT+CGG - Chr4:56604795-56604814 None:intergenic 40.0%
TCTTCTCTCTTTGTCACCAA+TGG - Chr4:56603942-56603961 None:intergenic 40.0%
TCTTGTGAAACTGCAGAGTA+GGG + Chr4:56605866-56605885 MsG0480021312.01.T01:intron 40.0%
TGAAGATACCAAAGTGATGG+TGG + Chr4:56603893-56603912 MsG0480021312.01.T01:CDS 40.0%
TGAAGTTGAACCTTCAACGA+AGG - Chr4:56603796-56603815 None:intergenic 40.0%
TGCAATAGTCTTTGCAGTCT+TGG + Chr4:56604947-56604966 MsG0480021312.01.T01:intron 40.0%
TTCTTGTGAAACTGCAGAGT+AGG + Chr4:56605865-56605884 MsG0480021312.01.T01:intron 40.0%
! AAAAAGCGCGGGAAGAAAAA+GGG - Chr4:56603752-56603771 None:intergenic 40.0%
! GGGTCTTATGCACATAGTTT+GGG + Chr4:56604014-56604033 MsG0480021312.01.T01:CDS 40.0%
! GGTCTTATGCACATAGTTTG+GGG + Chr4:56604015-56604034 MsG0480021312.01.T01:CDS 40.0%
! GTGAGGGTGAAATTTTCGAA+GGG - Chr4:56603685-56603704 None:intergenic 40.0%
! TGGGTCTTATGCACATAGTT+TGG + Chr4:56604013-56604032 MsG0480021312.01.T01:CDS 40.0%
!! GATTGTCGATTTCTGGATCA+AGG + Chr4:56606069-56606088 MsG0480021312.01.T01:three_prime_UTR 40.0%
!! GTCCAAATTCCGATTTGCTA+CGG + Chr4:56604621-56604640 MsG0480021312.01.T01:intron 40.0%
!!! TCTTGGTGCTTTTTGATGGT+TGG + Chr4:56604964-56604983 MsG0480021312.01.T01:intron 40.0%
AAAATACACGGGAGTTGTCC+AGG + Chr4:56605592-56605611 MsG0480021312.01.T01:CDS 45.0%
AAGAACCCAAATCATCACGG+CGG + Chr4:56605892-56605911 MsG0480021312.01.T01:CDS 45.0%
AAGCAGTTGGAAGAAGCAAC+TGG + Chr4:56605634-56605653 MsG0480021312.01.T01:CDS 45.0%
AATCCAACAAAACACCCCCA+AGG - Chr4:56604703-56604722 None:intergenic 45.0%
AATGTCCAGTCCTTGGGTAT+CGG - Chr4:56606026-56606045 None:intergenic 45.0%
ACTCTCATCCACCATCACTT+TGG - Chr4:56603904-56603923 None:intergenic 45.0%
ATGGGAAGAGGAATTTGAGG+TGG + Chr4:56604234-56604253 MsG0480021312.01.T01:intron 45.0%
CAACGAAGGAAGAAAGAGGA+GGG - Chr4:56603782-56603801 None:intergenic 45.0%
CACCGTAGCAAATCGGAATT+TGG - Chr4:56604626-56604645 None:intergenic 45.0%
CAGTACAATGTCCAGTCCTT+GGG - Chr4:56606032-56606051 None:intergenic 45.0%
CATGGAAAGCGAGAGGAAAT+AGG + Chr4:56605922-56605941 MsG0480021312.01.T01:CDS 45.0%
CCTCTTTCTTCCTTCGTTGA+AGG + Chr4:56603783-56603802 MsG0480021312.01.T01:CDS 45.0%
CCTTCAACGAAGGAAGAAAG+AGG - Chr4:56603786-56603805 None:intergenic 45.0%
CGAGTATGAGTGTGAAGGAA+AGG + Chr4:56603982-56604001 MsG0480021312.01.T01:CDS 45.0%
CTATTTCCTCTCGCTTTCCA+TGG - Chr4:56605924-56605943 None:intergenic 45.0%
GATCCAGAAATCGACAATCC+CGG - Chr4:56606068-56606087 None:intergenic 45.0%
GCCTAGTCTCTCCAAATTGA+AGG + Chr4:56605702-56605721 MsG0480021312.01.T01:CDS 45.0%
GGAACACTTGTATGAGGTTG+TGG + Chr4:56606090-56606109 MsG0480021312.01.T01:three_prime_UTR 45.0%
GTTTCGTCGAAGGATTGTTG+TGG + Chr4:56605958-56605977 MsG0480021312.01.T01:three_prime_UTR 45.0%
TACTGGCAGATGAGAATTCC+GGG + Chr4:56606047-56606066 MsG0480021312.01.T01:three_prime_UTR 45.0%
TCAACGAAGGAAGAAAGAGG+AGG - Chr4:56603783-56603802 None:intergenic 45.0%
TGAAACTACATCGTCGCCAT+TGG + Chr4:56603923-56603942 MsG0480021312.01.T01:CDS 45.0%
TTGTCAACCAGTGGTTACAG+TGG - Chr4:56604559-56604578 None:intergenic 45.0%
! AAAAGCGCGGGAAGAAAAAG+GGG - Chr4:56603751-56603770 None:intergenic 45.0%
! AAAGAGGAAGATGACGGTGA+CGG - Chr4:56603618-56603637 None:intergenic 45.0%
! AAGACTTCATCCTCTAGCTC+TGG - Chr4:56606130-56606149 None:intergenic 45.0%
! ACACAATTGGTGGGTAAGTC+TGG + Chr4:56604050-56604069 MsG0480021312.01.T01:CDS 45.0%
! GAAAAAGCGCGGGAAGAAAA+AGG - Chr4:56603753-56603772 None:intergenic 45.0%
! GAAGAGGAATTTGAGGTGGT+AGG + Chr4:56604238-56604257 MsG0480021312.01.T01:intron 45.0%
! GGGGGTGTGGATAAGAAATA+TGG - Chr4:56603732-56603751 None:intergenic 45.0%
! GGTGAGGGTGAAATTTTCGA+AGG - Chr4:56603686-56603705 None:intergenic 45.0%
! GTACTGGCAGATGAGAATTC+CGG + Chr4:56606046-56606065 MsG0480021312.01.T01:three_prime_UTR 45.0%
!! AACGGGTTTTTGGAAGGGAT+GGG - Chr4:56603707-56603726 None:intergenic 45.0%
!! ATGGTGAACGGGTTTTTGGA+AGG - Chr4:56603713-56603732 None:intergenic 45.0%
!! ATTCCGGGATTGTCGATTTC+TGG + Chr4:56606062-56606081 MsG0480021312.01.T01:three_prime_UTR 45.0%
!! CAAATTCCGATTTGCTACGG+TGG + Chr4:56604624-56604643 MsG0480021312.01.T01:intron 45.0%
!! TGGTGAACGGGTTTTTGGAA+GGG - Chr4:56603712-56603731 None:intergenic 45.0%
!! TTTTTGGAAGGGATGGGTGA+GGG - Chr4:56603701-56603720 None:intergenic 45.0%
!!! GCAGTCTTGGTGCTTTTTGA+TGG + Chr4:56604960-56604979 MsG0480021312.01.T01:intron 45.0%
AAAGCGCGGGAAGAAAAAGG+GGG - Chr4:56603750-56603769 None:intergenic 50.0%
ACAGTCAAACCAGTGGCCAA+AGG - Chr4:56605107-56605126 None:intergenic 50.0%
ACATACCGATACCCAAGGAC+TGG + Chr4:56606018-56606037 MsG0480021312.01.T01:three_prime_UTR 50.0%
AGAACCCAAATCATCACGGC+GGG + Chr4:56605893-56605912 MsG0480021312.01.T01:CDS 50.0%
CCAAGGACTGGACATTGTAC+TGG + Chr4:56606030-56606049 MsG0480021312.01.T01:three_prime_UTR 50.0%
CCAGTACAATGTCCAGTCCT+TGG - Chr4:56606033-56606052 None:intergenic 50.0%
GACAACTTTCCTTTGGCCAC+TGG + Chr4:56605095-56605114 MsG0480021312.01.T01:CDS 50.0%
GAGGGATGTAGGAAAAAGCG+CGG - Chr4:56603764-56603783 None:intergenic 50.0%
GGAAGAAAGAGGAGGGATGT+AGG - Chr4:56603775-56603794 None:intergenic 50.0%
GTGGCATTGCATGCAAAGCA+TGG + Chr4:56605059-56605078 MsG0480021312.01.T01:CDS 50.0%
GTTGTGAACGGAGAACGAAG+AGG - Chr4:56603587-56603606 None:intergenic 50.0%
TATAGCGCCACTGTAACCAC+TGG + Chr4:56604549-56604568 MsG0480021312.01.T01:intron 50.0%
TCCAGTGACAGTCAAACCAG+TGG - Chr4:56605114-56605133 None:intergenic 50.0%
TGCGTACATACCGATACCCA+AGG + Chr4:56606013-56606032 MsG0480021312.01.T01:three_prime_UTR 50.0%
TGCTTTGTGACCAGAGCTAG+AGG + Chr4:56606117-56606136 MsG0480021312.01.T01:three_prime_UTR 50.0%
! AGGGATGTAGGAAAAAGCGC+GGG - Chr4:56603763-56603782 None:intergenic 50.0%
! AGTGCCGAGTATGAGTGTGA+AGG + Chr4:56603977-56603996 MsG0480021312.01.T01:CDS 50.0%
! GAAGATGACGGTGACGGTAA+CGG - Chr4:56603612-56603631 None:intergenic 50.0%
!! GAACGGGTTTTTGGAAGGGA+TGG - Chr4:56603708-56603727 None:intergenic 50.0%
!! GTTTTTGGAAGGGATGGGTG+AGG - Chr4:56603702-56603721 None:intergenic 50.0%
GAACCCAAATCATCACGGCG+GGG + Chr4:56605894-56605913 MsG0480021312.01.T01:CDS 55.0%
GAACCCCGCCGTGATGATTT+GGG - Chr4:56605900-56605919 None:intergenic 55.0%
GAGAACGAAGAGGAGGTGAG+AGG - Chr4:56603577-56603596 None:intergenic 55.0%
GCCAGACCACCGTAGCAAAT+CGG - Chr4:56604633-56604652 None:intergenic 55.0%
GGTTCGACCAATCTGGCCAA+CGG - Chr4:56605668-56605687 None:intergenic 55.0%
GTGAACGGAGAACGAAGAGG+AGG - Chr4:56603584-56603603 None:intergenic 55.0%
TCAGTGACCGTTGGCCAGAT+TGG + Chr4:56605658-56605677 MsG0480021312.01.T01:CDS 55.0%
TGGTCTGGCGCCACTATAGA+TGG + Chr4:56604644-56604663 MsG0480021312.01.T01:intron 55.0%
TTGCAGCAGCTGCGTGACAA+TGG - Chr4:56604993-56605012 None:intergenic 55.0%
! ACGGTAACGGCGGTTGTGAA+CGG - Chr4:56603599-56603618 None:intergenic 55.0%
! GCAACTGGTTCAGTGACCGT+TGG + Chr4:56605649-56605668 MsG0480021312.01.T01:CDS 55.0%
!! GCCACTGGTTTGACTGTCAC+TGG + Chr4:56605110-56605129 MsG0480021312.01.T01:CDS 55.0%
!! TCCGATTTGCTACGGTGGTC+TGG + Chr4:56604629-56604648 MsG0480021312.01.T01:intron 55.0%
!!! TGGCCTTGGGGGTGTTTTGT+TGG + Chr4:56604697-56604716 MsG0480021312.01.T01:intron 55.0%
CGAACCCCGCCGTGATGATT+TGG - Chr4:56605901-56605920 None:intergenic 60.0%
GCGGGAAGAAAAAGGGGGTG+TGG - Chr4:56603745-56603764 None:intergenic 60.0%
GGTTCGCCATGGAAAGCGAG+AGG + Chr4:56605915-56605934 MsG0480021312.01.T01:CDS 60.0%
GTCACGCAGCTGCTGCAAAG+TGG + Chr4:56604995-56605014 MsG0480021312.01.T01:intron 60.0%
! GATGACGGTGACGGTAACGG+CGG - Chr4:56603609-56603628 None:intergenic 60.0%
CATCACGGCGGGGTTCGCCA+TGG + Chr4:56605904-56605923 MsG0480021312.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 56603552 56606288 56603552 ID=MsG0480021312.01;Name=MsG0480021312.01
Chr4 mRNA 56603552 56606288 56603552 ID=MsG0480021312.01.T01;Parent=MsG0480021312.01;Name=MsG0480021312.01.T01;_AED=0.48;_eAED=0.58;_QI=0|0|0.2|1|0.25|0.2|5|338|364
Chr4 exon 56603552 56604194 56603552 ID=MsG0480021312.01.T01:exon:6415;Parent=MsG0480021312.01.T01
Chr4 exon 56604361 56604421 56604361 ID=MsG0480021312.01.T01:exon:6416;Parent=MsG0480021312.01.T01
Chr4 exon 56605004 56605169 56605004 ID=MsG0480021312.01.T01:exon:6417;Parent=MsG0480021312.01.T01
Chr4 exon 56605589 56605744 56605589 ID=MsG0480021312.01.T01:exon:6418;Parent=MsG0480021312.01.T01
Chr4 exon 56605882 56606288 56605882 ID=MsG0480021312.01.T01:exon:6419;Parent=MsG0480021312.01.T01
Chr4 CDS 56603552 56604194 56603552 ID=MsG0480021312.01.T01:cds;Parent=MsG0480021312.01.T01
Chr4 CDS 56604361 56604421 56604361 ID=MsG0480021312.01.T01:cds;Parent=MsG0480021312.01.T01
Chr4 CDS 56605004 56605169 56605004 ID=MsG0480021312.01.T01:cds;Parent=MsG0480021312.01.T01
Chr4 CDS 56605589 56605744 56605589 ID=MsG0480021312.01.T01:cds;Parent=MsG0480021312.01.T01
Chr4 CDS 56605882 56605950 56605882 ID=MsG0480021312.01.T01:cds;Parent=MsG0480021312.01.T01
Chr4 three_prime_UTR 56605951 56606288 56605951 ID=MsG0480021312.01.T01:three_prime_utr;Parent=MsG0480021312.01.T01
Gene Sequence

>MsG0480021312.01.T01

ATGACGGCATCATCATCAGTATCCTCTCACCTCCTCTTCGTTCTCCGTTCACAACCGCCGTTACCGTCACCGTCATCTTCCTCTTTCATTTCATTTCTCAAACCTCTCTTTATTCCTTCTTCCAATATTACCCTTCGAAAATTTCACCCTCACCCATCCCTTCCAAAAACCCGTTCACCATATTTCTTATCCACACCCCCTTTTTCTTCCCGCGCTTTTTCCTACATCCCTCCTCTTTCTTCCTTCGTTGAAGGTTCAACTTCAAAATCCATAGAAGAAGACGAAATTGAAGATGAATATGATGAAGAAAGAGATGAATTTGAAAGTGAAAGAGAGAATTATGAAGATACCAAAGTGATGGTGGATGAGAGTGAAACTACATCGTCGCCATTGGTGACAAAGAGAGAAGAGAGATTGAAACTGGAAGTGCCGAGTATGAGTGTGAAGGAAAGGAAAGAACTTGGGTCTTATGCACATAGTTTGGGGAAAAAGCTTAGCACACAATTGGTGGGTAAGTCTGGTGTTACACCCAATCTTATTACTGCTTTCAGTGATAACCTTGAAGCTAATGAACTTCTTAAGGTAATGGTTATTTATGTTTTTTATTTGGGAATTTGTGTTCTGAAAAATGTCTTTGTTTTCGCATCTGTAATTGTCGCATTGCATCGTAGTAGCTATGAGTTTGTCATTGATGTTAATTATTGCTGCTGCAAAGTGGCTAAAACTAACTACTACATGCAATCTTATTCTAGTGTGGAAGTGGCATTGCATGCAAAGCATGGATATACTGTGTTTGACAACTTTCCTTTGGCCACTGGTTTGACTGTCACTGGAATGATTTTCATGAACTTAAGTGTTGCACCTAAAATGATTAAAATACACGGGAGTTGTCCAGGTGAGTTAGAAGATGTTGTGAAGCAGTTGGAAGAAGCAACTGGTTCAGTGACCGTTGGCCAGATTGGTCGAACCCTTATTTTATACAGGCCTAGTCTCTCCAAATTGAAGGTAGAAGAAAAGAAGAAACAAAGTAGGGAACAAGAACCCAAATCATCACGGCGGGGTTCGCCATGGAAAGCGAGAGGAAATAGGTCATAA

Protein sequence

>MsG0480021312.01.T01

MTASSSVSSHLLFVLRSQPPLPSPSSSSFISFLKPLFIPSSNITLRKFHPHPSLPKTRSPYFLSTPPFSSRAFSYIPPLSSFVEGSTSKSIEEDEIEDEYDEERDEFESERENYEDTKVMVDESETTSSPLVTKREERLKLEVPSMSVKERKELGSYAHSLGKKLSTQLVGKSGVTPNLITAFSDNLEANELLKVMVIYVFYLGICVLKNVFVFASVIVALHRSSYEFVIDVNYCCCKVAKTNYYMQSYSSVEVALHAKHGYTVFDNFPLATGLTVTGMIFMNLSVAPKMIKIHGSCPGELEDVVKQLEEATGSVTVGQIGRTLILYRPSLSKLKVEEKKKQSREQEPKSSRRGSPWKARGNRS*