AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025259.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025259.01.T01 MTR_5g025270 93.888 409 25 0 1 409 157 565 0.0 787
MsG0580025259.01.T01 MTR_5g025230 82.963 405 68 1 1 405 155 558 0.0 702
MsG0580025259.01.T01 MTR_5g025250 81.931 404 72 1 1 404 156 558 0.0 694
MsG0580025259.01.T01 MTR_2g070460 35.122 410 254 8 1 404 188 591 1.28e-85 273
MsG0580025259.01.T01 MTR_8g037315 35.765 425 248 8 1 405 101 520 2.65e-77 249
MsG0580025259.01.T01 MTR_8g037275 33.882 425 252 9 1 404 138 554 2.92e-71 234
MsG0580025259.01.T01 MTR_8g037290 33.882 425 252 10 1 404 138 554 2.47e-69 229
MsG0580025259.01.T01 MTR_8g037310 32.629 426 258 10 1 405 138 555 4.24e-66 221
MsG0580025259.01.T01 MTR_3g110195 24.886 438 279 13 1 404 147 568 8.41e-31 124
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025259.01.T01 AT4G19170 68.434 415 120 5 1 405 165 578 0.0 587
MsG0580025259.01.T01 AT3G63520 37.825 423 239 8 1 405 102 518 2.71e-85 270
MsG0580025259.01.T01 AT3G14440 37.136 412 245 9 1 405 176 580 1.59e-84 270
MsG0580025259.01.T01 AT1G30100 37.470 411 246 8 1 405 166 571 1.35e-83 267
MsG0580025259.01.T01 AT4G18350 36.010 411 251 7 1 404 159 564 1.03e-81 262
MsG0580025259.01.T01 AT1G78390 35.922 412 245 10 1 404 236 636 3.03e-80 260
MsG0580025259.01.T01 AT3G24220 33.902 410 259 10 1 404 154 557 5.99e-69 228

Find 97 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCCTCTTGACATGATTTC+TGG 0.188747 5:+16068591 MsG0580025259.01.T01:CDS
ATTTGCATCAAAACGGAAAT+AGG 0.215073 5:-16068457 None:intergenic
AATCCAATGCCGAAGATTTC+AGG 0.254183 5:+16068978 MsG0580025259.01.T01:CDS
CAGCACGAAACCTGGATTTC+GGG 0.277585 5:+16068898 MsG0580025259.01.T01:CDS
GTGAAGATAAATATTAAAAC+AGG 0.290009 5:+16068852 MsG0580025259.01.T01:CDS
CTGGATTTCGGGGTGATAAA+TGG 0.290879 5:+16068909 MsG0580025259.01.T01:CDS
GGTGATAAATGGTGATTATA+TGG 0.293631 5:+16068920 MsG0580025259.01.T01:CDS
TCAGCACGAAACCTGGATTT+CGG 0.304408 5:+16068897 MsG0580025259.01.T01:CDS
AATCTTGACGGCCGATTGTT+TGG 0.307017 5:-16068332 None:intergenic
TCCAGGTTTCGTGCTGATAA+TGG 0.334748 5:-16068891 None:intergenic
ACCGCGGCACGTGTCATATC+TGG 0.338162 5:+16068183 MsG0580025259.01.T01:CDS
AACACAAGTTTGGCTTTGTT+TGG 0.358095 5:+16068240 MsG0580025259.01.T01:CDS
AGGTTTGTTTATGCGGCAAT+TGG 0.386277 5:+16068954 MsG0580025259.01.T01:CDS
GTGATAAATGGTGATTATAT+GGG 0.388122 5:+16068921 MsG0580025259.01.T01:CDS
TGGTTTAGCCAACACAAGTT+TGG 0.393154 5:+16068230 MsG0580025259.01.T01:CDS
TGTTAAACATAACGATGTTC+CGG 0.404869 5:+16068482 MsG0580025259.01.T01:CDS
GCTAAACCAATGCCGTTAGA+AGG 0.408884 5:-16068216 None:intergenic
GGTGTAAGCTTGATTTCATA+AGG 0.411021 5:-16068297 None:intergenic
ATTATATGGGGAAGAAGAAT+AGG 0.419503 5:+16068934 MsG0580025259.01.T01:CDS
GAAGTTGGATGTAGATTGTA+TGG 0.425213 5:+16069032 MsG0580025259.01.T01:CDS
ACCATTATCAGCACGAAACC+TGG 0.440073 5:+16068890 MsG0580025259.01.T01:CDS
CCTAAAATTGACGGCGACAC+TGG 0.451020 5:+16068390 MsG0580025259.01.T01:CDS
TTGTATGGAGAGGATTGTTA+TGG 0.460237 5:+16069047 MsG0580025259.01.T01:CDS
CATTTATCACCCCGAAATCC+AGG 0.462433 5:-16068908 None:intergenic
CCGATCCATCAAAAGTTTCA+AGG 0.463927 5:+16068632 MsG0580025259.01.T01:CDS
ACTCCTGAAATCTTCGGCAT+TGG 0.467844 5:-16068981 None:intergenic
TAACACCATTTGCATCAAAA+CGG 0.472715 5:-16068464 None:intergenic
CGCGATCAATGCGTGGGATG+GGG 0.473648 5:+16068731 MsG0580025259.01.T01:CDS
TACAATCCTTCTAACGGCAT+TGG 0.476143 5:+16068210 MsG0580025259.01.T01:CDS
ACGCGATCAATGCGTGGGAT+GGG 0.477959 5:+16068730 MsG0580025259.01.T01:CDS
TGCTCGATGGAGAGAACATT+CGG 0.481558 5:-16068786 None:intergenic
AAAACACGTTTGGTATAAGT+TGG 0.483154 5:-16068116 None:intergenic
GTGACGAGTCGAAGATGAAA+TGG 0.483688 5:+16068679 MsG0580025259.01.T01:CDS
TTATGTGCATGATGAGAAGA+AGG 0.484903 5:+16069133 MsG0580025259.01.T01:CDS
GTTTGCCGTTAAAATCTTGA+CGG 0.485908 5:-16068344 None:intergenic
CACGCGATCAATGCGTGGGA+TGG 0.488713 5:+16068729 MsG0580025259.01.T01:CDS
CCTCTTGACATGATTTCTGG+TGG 0.488783 5:+16068594 MsG0580025259.01.T01:CDS
ATGAAATGGTTCGATGTGCC+AGG 0.489596 5:+16068693 MsG0580025259.01.T01:CDS
TTGAAACCAGAAAACACGTT+TGG 0.493801 5:-16068126 None:intergenic
ATTGTTTGGATATCACCGTT+TGG 0.495988 5:-16068318 None:intergenic
AACGGTGATATCCAAACAAT+CGG 0.496479 5:+16068321 MsG0580025259.01.T01:CDS
GAAGAATAGGTTTGTTTATG+CGG 0.496498 5:+16068947 MsG0580025259.01.T01:CDS
TTCACCACTCCTGAAATCTT+CGG 0.499358 5:-16068987 None:intergenic
GTCGCCGGAGTTTGAGATTG+TGG 0.504977 5:+16069187 MsG0580025259.01.T01:CDS
TACAAAATCGAAAACGAAGC+TGG 0.505480 5:+16068090 MsG0580025259.01.T01:CDS
AAAGGAGGATGGTGAAGAAG+AGG 0.507917 5:+16069091 MsG0580025259.01.T01:CDS
CCATCAAAAGTTTCAAGGAT+CGG 0.508121 5:+16068637 MsG0580025259.01.T01:CDS
GGTCTTGTCATGGAGAAAAC+CGG 0.510037 5:-16068501 None:intergenic
GGTTTGTTTATGCGGCAATT+GGG 0.511453 5:+16068955 MsG0580025259.01.T01:CDS
ACTGCTCATCCTAAAATTGA+CGG 0.512038 5:+16068381 MsG0580025259.01.T01:CDS
GGAGTTTGAGATTGTGGCGG+AGG 0.515266 5:+16069193 MsG0580025259.01.T01:CDS
CACGCCATTACAATCTCAAA+CGG 0.522637 5:+16068027 MsG0580025259.01.T01:CDS
AAAACCATACGGCACCTCCT+TGG 0.524660 5:-16069224 None:intergenic
GCGAAATCATGAAGAAAAGA+AGG 0.525570 5:-16068522 None:intergenic
TCATGCACGCGATCAATGCG+TGG 0.547541 5:+16068724 MsG0580025259.01.T01:CDS
GAAATCAAGCTTACACCAAA+CGG 0.548084 5:+16068303 MsG0580025259.01.T01:CDS
GTGTTTACGGATATTCAGCT+TGG 0.550330 5:+16068564 MsG0580025259.01.T01:CDS
ATTTGTAAGTTTGAACGTAA+CGG 0.551232 5:-16068068 None:intergenic
GGTGATGGATGCAAAGTCGC+CGG 0.561761 5:+16069172 MsG0580025259.01.T01:CDS
TAAGCTTGATTTCATAAGGA+AGG 0.561782 5:-16068293 None:intergenic
TATGGAGAGGATTGTTATGG+TGG 0.566167 5:+16069050 MsG0580025259.01.T01:CDS
ATGATTTCTGGTGGTTCACA+CGG 0.570418 5:+16068603 MsG0580025259.01.T01:CDS
TTTCTGGTGGTTCACACGGT+AGG 0.572254 5:+16068607 MsG0580025259.01.T01:CDS
TCCGCCACAATCTCAAACTC+CGG 0.575111 5:-16069191 None:intergenic
CTTATAGCTTCTGCTGCACG+TGG 0.575305 5:+16068153 MsG0580025259.01.T01:CDS
AGGATGAGCAGTCATACTCA+TGG 0.575328 5:-16068370 None:intergenic
AACGTAACGGCTACAGAGTG+TGG 0.575577 5:-16068055 None:intergenic
GCGTGCATGATATTAAATCC+TGG 0.576415 5:-16068711 None:intergenic
TATGTGCATGATGAGAAGAA+GGG 0.578787 5:+16069134 MsG0580025259.01.T01:CDS
AAGAAAAGAAGGTCTTGTCA+TGG 0.578816 5:-16068511 None:intergenic
AAACAAAGCCAAACTTGTGT+TGG 0.580683 5:-16068238 None:intergenic
TCTCTCCATCGTATGCTCGA+TGG 0.582461 5:-16068799 None:intergenic
GTTGCCAAGGAGGTGCCGTA+TGG 0.585507 5:+16069220 MsG0580025259.01.T01:CDS
TATGACACGTGCCGCGGTGA+CGG 0.586484 5:-16068178 None:intergenic
AACAATCCATGAAAACCATA+CGG 0.587297 5:-16069235 None:intergenic
CCACCAGAAATCATGTCAAG+AGG 0.590568 5:-16068594 None:intergenic
TGATAAATGGTGATTATATG+GGG 0.591790 5:+16068922 MsG0580025259.01.T01:CDS
GATGGTGAAGAAGAGGATGA+TGG 0.592671 5:+16069098 MsG0580025259.01.T01:CDS
GTGGGATGGGGAAGATGATG+AGG 0.595645 5:+16068743 MsG0580025259.01.T01:CDS
ATGAGAAGAAGGGAGAGTCA+AGG 0.607088 5:+16069144 MsG0580025259.01.T01:CDS
GTGTTGAAAGGTGAGGAAGT+TGG 0.610000 5:+16069017 MsG0580025259.01.T01:CDS
GGACAATACAATCCTTCTAA+CGG 0.610598 5:+16068204 MsG0580025259.01.T01:CDS
TGGCGGAGGTGAAGTTGCCA+AGG 0.613374 5:+16069207 MsG0580025259.01.T01:CDS
CGGAGGTGAAGTTGCCAAGG+AGG 0.623675 5:+16069210 MsG0580025259.01.T01:CDS
TCCAGATATGACACGTGCCG+CGG 0.630149 5:-16068184 None:intergenic
GTGAAGATTGATGTGTTGAA+AGG 0.637036 5:+16069005 MsG0580025259.01.T01:CDS
CATGCACGCGATCAATGCGT+GGG 0.637360 5:+16068725 MsG0580025259.01.T01:CDS
TGGATGTAGATTGTATGGAG+AGG 0.648715 5:+16069037 MsG0580025259.01.T01:CDS
GCCGGAGTTTGAGATTGTGG+CGG 0.652926 5:+16069190 MsG0580025259.01.T01:CDS
TGAAGATAAATATTAAAACA+GGG 0.655068 5:+16068853 MsG0580025259.01.T01:CDS
AGCACGAAACCTGGATTTCG+GGG 0.660216 5:+16068899 MsG0580025259.01.T01:CDS
GATTGATGTGTTGAAAGGTG+AGG 0.662195 5:+16069010 MsG0580025259.01.T01:CDS
AATGCCGAAGATTTCAGGAG+TGG 0.663954 5:+16068983 MsG0580025259.01.T01:CDS
TCTCTCCATCGAGCATACGA+TGG 0.671121 5:+16068794 MsG0580025259.01.T01:CDS
ATGGTGGCATAGGACCGTAA+CGG 0.707951 5:-16068428 None:intergenic
GACTCGTCACTAGCATAACG+AGG 0.742544 5:-16068666 None:intergenic
TGCACGTGGCTCCGTCACCG+CGG 0.771494 5:+16068167 MsG0580025259.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAGATAAATATTAAAACA+GGG + Chr5:16068853-16068872 MsG0580025259.01.T01:CDS 15.0%
!! GTGAAGATAAATATTAAAAC+AGG + Chr5:16068852-16068871 MsG0580025259.01.T01:CDS 20.0%
! AAACGGAAATAGGTTAAAAA+TGG - Chr5:16068450-16068469 None:intergenic 25.0%
! ATTTGTAAGTTTGAACGTAA+CGG - Chr5:16068071-16068090 None:intergenic 25.0%
! GTGATAAATGGTGATTATAT+GGG + Chr5:16068921-16068940 MsG0580025259.01.T01:CDS 25.0%
! TGATAAATGGTGATTATATG+GGG + Chr5:16068922-16068941 MsG0580025259.01.T01:CDS 25.0%
!! TAAAAAGTATGCTGTGTTTA+CGG + Chr5:16068551-16068570 MsG0580025259.01.T01:CDS 25.0%
AAAACACGTTTGGTATAAGT+TGG - Chr5:16068119-16068138 None:intergenic 30.0%
AACAATCCATGAAAACCATA+CGG - Chr5:16069238-16069257 None:intergenic 30.0%
ATTATATGGGGAAGAAGAAT+AGG + Chr5:16068934-16068953 MsG0580025259.01.T01:CDS 30.0%
ATTTGCATCAAAACGGAAAT+AGG - Chr5:16068460-16068479 None:intergenic 30.0%
GGTGATAAATGGTGATTATA+TGG + Chr5:16068920-16068939 MsG0580025259.01.T01:CDS 30.0%
TAACACCATTTGCATCAAAA+CGG - Chr5:16068467-16068486 None:intergenic 30.0%
TAAGCTTGATTTCATAAGGA+AGG - Chr5:16068296-16068315 None:intergenic 30.0%
TGTTAAACATAACGATGTTC+CGG + Chr5:16068482-16068501 MsG0580025259.01.T01:CDS 30.0%
! GAAGAATAGGTTTGTTTATG+CGG + Chr5:16068947-16068966 MsG0580025259.01.T01:CDS 30.0%
! GGTAACAAACTTTTTGCTTT+AGG + Chr5:16068261-16068280 MsG0580025259.01.T01:CDS 30.0%
!! CACAGCATACTTTTTAGTAA+TGG - Chr5:16068547-16068566 None:intergenic 30.0%
!! TATTTCCGTTTTGATGCAAA+TGG + Chr5:16068459-16068478 MsG0580025259.01.T01:CDS 30.0%
!! TTTTCCGTTTGAGATTGTAA+TGG - Chr5:16068034-16068053 None:intergenic 30.0%
AAACAAAGCCAAACTTGTGT+TGG - Chr5:16068241-16068260 None:intergenic 35.0%
AACGGTGATATCCAAACAAT+CGG + Chr5:16068321-16068340 MsG0580025259.01.T01:CDS 35.0%
AATCCTCTTGACATGATTTC+TGG + Chr5:16068591-16068610 MsG0580025259.01.T01:CDS 35.0%
ACTGCTCATCCTAAAATTGA+CGG + Chr5:16068381-16068400 MsG0580025259.01.T01:CDS 35.0%
ATTGTTTGGATATCACCGTT+TGG - Chr5:16068321-16068340 None:intergenic 35.0%
CCATCAAAAGTTTCAAGGAT+CGG + Chr5:16068637-16068656 MsG0580025259.01.T01:CDS 35.0%
CGGAAATAGGTTAAAAATGG+TGG - Chr5:16068447-16068466 None:intergenic 35.0%
GAAATCAAGCTTACACCAAA+CGG + Chr5:16068303-16068322 MsG0580025259.01.T01:CDS 35.0%
GAAGTTGGATGTAGATTGTA+TGG + Chr5:16069032-16069051 MsG0580025259.01.T01:CDS 35.0%
GCGAAATCATGAAGAAAAGA+AGG - Chr5:16068525-16068544 None:intergenic 35.0%
GGACAATACAATCCTTCTAA+CGG + Chr5:16068204-16068223 MsG0580025259.01.T01:CDS 35.0%
GGTGTAAGCTTGATTTCATA+AGG - Chr5:16068300-16068319 None:intergenic 35.0%
GTGAAGATTGATGTGTTGAA+AGG + Chr5:16069005-16069024 MsG0580025259.01.T01:CDS 35.0%
GTTTGCCGTTAAAATCTTGA+CGG - Chr5:16068347-16068366 None:intergenic 35.0%
TACAAAATCGAAAACGAAGC+TGG + Chr5:16068090-16068109 MsG0580025259.01.T01:CDS 35.0%
TAGGTTAAAAATGGTGGCAT+AGG - Chr5:16068441-16068460 None:intergenic 35.0%
TATGTGCATGATGAGAAGAA+GGG + Chr5:16069134-16069153 MsG0580025259.01.T01:CDS 35.0%
TTATGTGCATGATGAGAAGA+AGG + Chr5:16069133-16069152 MsG0580025259.01.T01:CDS 35.0%
TTGAAACCAGAAAACACGTT+TGG - Chr5:16068129-16068148 None:intergenic 35.0%
TTGTATGGAGAGGATTGTTA+TGG + Chr5:16069047-16069066 MsG0580025259.01.T01:CDS 35.0%
! AAGAAAAGAAGGTCTTGTCA+TGG - Chr5:16068514-16068533 None:intergenic 35.0%
! CTTATACCAAACGTGTTTTC+TGG + Chr5:16068120-16068139 MsG0580025259.01.T01:CDS 35.0%
! GAAACTTTTGCTTTCCGTTA+CGG + Chr5:16068414-16068433 MsG0580025259.01.T01:CDS 35.0%
!! AACACAAGTTTGGCTTTGTT+TGG + Chr5:16068240-16068259 MsG0580025259.01.T01:CDS 35.0%
!! CCTTGAAACTTTTGATGGAT+CGG - Chr5:16068635-16068654 None:intergenic 35.0%
AATCCAATGCCGAAGATTTC+AGG + Chr5:16068978-16068997 MsG0580025259.01.T01:CDS 40.0%
CACGCCATTACAATCTCAAA+CGG + Chr5:16068027-16068046 MsG0580025259.01.T01:CDS 40.0%
CCGATCCATCAAAAGTTTCA+AGG + Chr5:16068632-16068651 MsG0580025259.01.T01:CDS 40.0%
GATTGATGTGTTGAAAGGTG+AGG + Chr5:16069010-16069029 MsG0580025259.01.T01:CDS 40.0%
GCGTGCATGATATTAAATCC+TGG - Chr5:16068714-16068733 None:intergenic 40.0%
GTGTTTACGGATATTCAGCT+TGG + Chr5:16068564-16068583 MsG0580025259.01.T01:CDS 40.0%
TACAATCCTTCTAACGGCAT+TGG + Chr5:16068210-16068229 MsG0580025259.01.T01:CDS 40.0%
TATGGAGAGGATTGTTATGG+TGG + Chr5:16069050-16069069 MsG0580025259.01.T01:CDS 40.0%
TGGATGTAGATTGTATGGAG+AGG + Chr5:16069037-16069056 MsG0580025259.01.T01:CDS 40.0%
TGGTTTAGCCAACACAAGTT+TGG + Chr5:16068230-16068249 MsG0580025259.01.T01:CDS 40.0%
TTCACCACTCCTGAAATCTT+CGG - Chr5:16068990-16069009 None:intergenic 40.0%
! AGGTTTGTTTATGCGGCAAT+TGG + Chr5:16068954-16068973 MsG0580025259.01.T01:CDS 40.0%
! ATCGGCCGTCAAGATTTTAA+CGG + Chr5:16068339-16068358 MsG0580025259.01.T01:CDS 40.0%
! CCGATCCTTGAAACTTTTGA+TGG - Chr5:16068640-16068659 None:intergenic 40.0%
! GGTTTGTTTATGCGGCAATT+GGG + Chr5:16068955-16068974 MsG0580025259.01.T01:CDS 40.0%
!! ATGATTTCTGGTGGTTCACA+CGG + Chr5:16068603-16068622 MsG0580025259.01.T01:CDS 40.0%
!!! AGAGTCAAGGTTTTTGGTGA+TGG + Chr5:16069157-16069176 MsG0580025259.01.T01:CDS 40.0%
AAAGGAGGATGGTGAAGAAG+AGG + Chr5:16069091-16069110 MsG0580025259.01.T01:CDS 45.0%
AATCTTGACGGCCGATTGTT+TGG - Chr5:16068335-16068354 None:intergenic 45.0%
AATGCCGAAGATTTCAGGAG+TGG + Chr5:16068983-16069002 MsG0580025259.01.T01:CDS 45.0%
ACCATTATCAGCACGAAACC+TGG + Chr5:16068890-16068909 MsG0580025259.01.T01:CDS 45.0%
ACTCCTGAAATCTTCGGCAT+TGG - Chr5:16068984-16069003 None:intergenic 45.0%
AGGATGAGCAGTCATACTCA+TGG - Chr5:16068373-16068392 None:intergenic 45.0%
ATGAAATGGTTCGATGTGCC+AGG + Chr5:16068693-16068712 MsG0580025259.01.T01:CDS 45.0%
ATGAGAAGAAGGGAGAGTCA+AGG + Chr5:16069144-16069163 MsG0580025259.01.T01:CDS 45.0%
CATTTATCACCCCGAAATCC+AGG - Chr5:16068911-16068930 None:intergenic 45.0%
CCACCAGAAATCATGTCAAG+AGG - Chr5:16068597-16068616 None:intergenic 45.0%
CTGGATTTCGGGGTGATAAA+TGG + Chr5:16068909-16068928 MsG0580025259.01.T01:CDS 45.0%
GATGGTGAAGAAGAGGATGA+TGG + Chr5:16069098-16069117 MsG0580025259.01.T01:CDS 45.0%
GCTAAACCAATGCCGTTAGA+AGG - Chr5:16068219-16068238 None:intergenic 45.0%
GTGACGAGTCGAAGATGAAA+TGG + Chr5:16068679-16068698 MsG0580025259.01.T01:CDS 45.0%
GTGTTGAAAGGTGAGGAAGT+TGG + Chr5:16069017-16069036 MsG0580025259.01.T01:CDS 45.0%
TCAGCACGAAACCTGGATTT+CGG + Chr5:16068897-16068916 MsG0580025259.01.T01:CDS 45.0%
TCCTCCTTTGCCACGAAAAA+CGG - Chr5:16069080-16069099 None:intergenic 45.0%
TGCTCGATGGAGAGAACATT+CGG - Chr5:16068789-16068808 None:intergenic 45.0%
! CCTCTTGACATGATTTCTGG+TGG + Chr5:16068594-16068613 MsG0580025259.01.T01:CDS 45.0%
! GAAGGGAGAGTCAAGGTTTT+TGG + Chr5:16069151-16069170 MsG0580025259.01.T01:CDS 45.0%
! GGTCTTGTCATGGAGAAAAC+CGG - Chr5:16068504-16068523 None:intergenic 45.0%
! TCCAGGTTTCGTGCTGATAA+TGG - Chr5:16068894-16068913 None:intergenic 45.0%
! TTTTTCGTGGCAAAGGAGGA+TGG + Chr5:16069080-16069099 MsG0580025259.01.T01:CDS 45.0%
AAAACCATACGGCACCTCCT+TGG - Chr5:16069227-16069246 None:intergenic 50.0%
AACGTAACGGCTACAGAGTG+TGG - Chr5:16068058-16068077 None:intergenic 50.0%
AGCACGAAACCTGGATTTCG+GGG + Chr5:16068899-16068918 MsG0580025259.01.T01:CDS 50.0%
ATGGTGGCATAGGACCGTAA+CGG - Chr5:16068431-16068450 None:intergenic 50.0%
CAGCACGAAACCTGGATTTC+GGG + Chr5:16068898-16068917 MsG0580025259.01.T01:CDS 50.0%
CCTAAAATTGACGGCGACAC+TGG + Chr5:16068390-16068409 MsG0580025259.01.T01:CDS 50.0%
CTTATAGCTTCTGCTGCACG+TGG + Chr5:16068153-16068172 MsG0580025259.01.T01:CDS 50.0%
GACTCGTCACTAGCATAACG+AGG - Chr5:16068669-16068688 None:intergenic 50.0%
TCCGCCACAATCTCAAACTC+CGG - Chr5:16069194-16069213 None:intergenic 50.0%
TCTCTCCATCGAGCATACGA+TGG + Chr5:16068794-16068813 MsG0580025259.01.T01:CDS 50.0%
TCTCTCCATCGTATGCTCGA+TGG - Chr5:16068802-16068821 None:intergenic 50.0%
! CCAGTGTCGCCGTCAATTTT+AGG - Chr5:16068393-16068412 None:intergenic 50.0%
! TTTCTGGTGGTTCACACGGT+AGG + Chr5:16068607-16068626 MsG0580025259.01.T01:CDS 50.0%
!!! GAGGTGCCGTATGGTTTTCA+TGG + Chr5:16069229-16069248 MsG0580025259.01.T01:CDS 50.0%
!!! TGAGCCGTTTTTCGTGGCAA+AGG + Chr5:16069073-16069092 MsG0580025259.01.T01:CDS 50.0%
ACGCGATCAATGCGTGGGAT+GGG + Chr5:16068730-16068749 MsG0580025259.01.T01:CDS 55.0%
CATGCACGCGATCAATGCGT+GGG + Chr5:16068725-16068744 MsG0580025259.01.T01:CDS 55.0%
GTGGGATGGGGAAGATGATG+AGG + Chr5:16068743-16068762 MsG0580025259.01.T01:CDS 55.0%
TCATGCACGCGATCAATGCG+TGG + Chr5:16068724-16068743 MsG0580025259.01.T01:CDS 55.0%
TCCAGATATGACACGTGCCG+CGG - Chr5:16068187-16068206 None:intergenic 55.0%
! GCCGGAGTTTGAGATTGTGG+CGG + Chr5:16069190-16069209 MsG0580025259.01.T01:CDS 55.0%
! GGAGTTTGAGATTGTGGCGG+AGG + Chr5:16069193-16069212 MsG0580025259.01.T01:CDS 55.0%
! GTCGCCGGAGTTTGAGATTG+TGG + Chr5:16069187-16069206 MsG0580025259.01.T01:CDS 55.0%
!! GGTGATGGATGCAAAGTCGC+CGG + Chr5:16069172-16069191 MsG0580025259.01.T01:CDS 55.0%
!!! GCCGTTTTTCGTGGCAAAGG+AGG + Chr5:16069076-16069095 MsG0580025259.01.T01:CDS 55.0%
!!! TGGTGGTGAGCCGTTTTTCG+TGG + Chr5:16069067-16069086 MsG0580025259.01.T01:CDS 55.0%
ACCGCGGCACGTGTCATATC+TGG + Chr5:16068183-16068202 MsG0580025259.01.T01:CDS 60.0%
CACGCGATCAATGCGTGGGA+TGG + Chr5:16068729-16068748 MsG0580025259.01.T01:CDS 60.0%
CGCGATCAATGCGTGGGATG+GGG + Chr5:16068731-16068750 MsG0580025259.01.T01:CDS 60.0%
CGGAGGTGAAGTTGCCAAGG+AGG + Chr5:16069210-16069229 MsG0580025259.01.T01:CDS 60.0%
TATGACACGTGCCGCGGTGA+CGG - Chr5:16068181-16068200 None:intergenic 60.0%
TGGCGGAGGTGAAGTTGCCA+AGG + Chr5:16069207-16069226 MsG0580025259.01.T01:CDS 60.0%
!! GTTGCCAAGGAGGTGCCGTA+TGG + Chr5:16069220-16069239 MsG0580025259.01.T01:CDS 60.0%
TGCACGTGGCTCCGTCACCG+CGG + Chr5:16068167-16068186 MsG0580025259.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 16068021 16069262 16068021 ID=MsG0580025259.01;Name=MsG0580025259.01
Chr5 mRNA 16068021 16069262 16068021 ID=MsG0580025259.01.T01;Parent=MsG0580025259.01;Name=MsG0580025259.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|413
Chr5 exon 16068021 16069262 16068021 ID=MsG0580025259.01.T01:exon:18856;Parent=MsG0580025259.01.T01
Chr5 CDS 16068021 16069262 16068021 ID=MsG0580025259.01.T01:cds;Parent=MsG0580025259.01.T01
Gene Sequence

>MsG0580025259.01.T01

ATGCTTCACGCCATTACAATCTCAAACGGAAAAGCCACACTCTGTAGCCGTTACGTTCAAACTTACAAATACAAAATCGAAAACGAAGCTGGTTACCAACTTATACCAAACGTGTTTTCTGGTTTCAACTCGCTTATAGCTTCTGCTGCACGTGGCTCCGTCACCGCGGCACGTGTCATATCTGGACAATACAATCCTTCTAACGGCATTGGTTTAGCCAACACAAGTTTGGCTTTGTTTGGTAACAAACTTTTTGCTTTAGGAGAATCAGACCTTCCTTATGAAATCAAGCTTACACCAAACGGTGATATCCAAACAATCGGCCGTCAAGATTTTAACGGCAAACTCTCCATGAGTATGACTGCTCATCCTAAAATTGACGGCGACACTGGTGAAACTTTTGCTTTCCGTTACGGTCCTATGCCACCATTTTTAACCTATTTCCGTTTTGATGCAAATGGTGTTAAACATAACGATGTTCCGGTTTTCTCCATGACAAGACCTTCTTTTCTTCATGATTTCGCCATTACTAAAAAGTATGCTGTGTTTACGGATATTCAGCTTGGTATGAATCCTCTTGACATGATTTCTGGTGGTTCACACGGTAGGTTCCGATCCATCAAAAGTTTCAAGGATCGGATTATACCTCGTTATGCTAGTGACGAGTCGAAGATGAAATGGTTCGATGTGCCAGGATTTAATATCATGCACGCGATCAATGCGTGGGATGGGGAAGATGATGAGGATACTGTGACACTAATTGCTCCGAATGTTCTCTCCATCGAGCATACGATGGAGAGACTTGAGCTTGTGCATGCAATGATTGAGAAAGTGAAGATAAATATTAAAACAGGGATAGTATCAAGACAACCATTATCAGCACGAAACCTGGATTTCGGGGTGATAAATGGTGATTATATGGGGAAGAAGAATAGGTTTGTTTATGCGGCAATTGGGAATCCAATGCCGAAGATTTCAGGAGTGGTGAAGATTGATGTGTTGAAAGGTGAGGAAGTTGGATGTAGATTGTATGGAGAGGATTGTTATGGTGGTGAGCCGTTTTTCGTGGCAAAGGAGGATGGTGAAGAAGAGGATGATGGTTATTTAGTGAGTTATGTGCATGATGAGAAGAAGGGAGAGTCAAGGTTTTTGGTGATGGATGCAAAGTCGCCGGAGTTTGAGATTGTGGCGGAGGTGAAGTTGCCAAGGAGGTGCCGTATGGTTTTCATGGATTGTTTGTGA

Protein sequence

>MsG0580025259.01.T01

MLHAITISNGKATLCSRYVQTYKYKIENEAGYQLIPNVFSGFNSLIASAARGSVTAARVISGQYNPSNGIGLANTSLALFGNKLFALGESDLPYEIKLTPNGDIQTIGRQDFNGKLSMSMTAHPKIDGDTGETFAFRYGPMPPFLTYFRFDANGVKHNDVPVFSMTRPSFLHDFAITKKYAVFTDIQLGMNPLDMISGGSHGRFRSIKSFKDRIIPRYASDESKMKWFDVPGFNIMHAINAWDGEDDEDTVTLIAPNVLSIEHTMERLELVHAMIEKVKINIKTGIVSRQPLSARNLDFGVINGDYMGKKNRFVYAAIGNPMPKISGVVKIDVLKGEEVGCRLYGEDCYGGEPFFVAKEDGEEEDDGYLVSYVHDEKKGESRFLVMDAKSPEFEIVAEVKLPRRCRMVFMDCL*