AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880044948.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880044948.01.T01 MTR_8g062700 95.139 144 7 0 1 144 537 680 8.95e-89 293
MsG0880044948.01.T01 MTR_8g062700 95.139 144 7 0 1 144 538 681 8.98e-89 293
MsG0880044948.01.T01 MTR_5g036670 77.778 144 32 0 1 144 534 677 6.04e-73 248
MsG0880044948.01.T01 MTR_6g008970 68.750 144 45 0 1 144 520 663 2.32e-65 226
MsG0880044948.01.T01 MTR_0202s0040 37.627 295 148 5 146 411 258 545 7.63e-48 171
MsG0880044948.01.T01 MTR_3g048220 35.932 295 153 5 146 411 256 543 1.29e-43 160
MsG0880044948.01.T01 MTR_6g090350 34.247 292 162 4 146 411 275 562 1.24e-39 149
MsG0880044948.01.T01 MTR_0139s0020 32.646 291 134 3 146 411 372 625 4.84e-38 145
MsG0880044948.01.T01 MTR_6g464440 34.296 277 160 8 146 411 383 648 1.10e-32 130
MsG0880044948.01.T01 MTR_6g034305 35.398 226 99 6 127 325 250 455 1.12e-24 105
MsG0880044948.01.T01 MTR_0909s0020 40.268 149 75 5 146 289 258 397 2.63e-20 92.8
MsG0880044948.01.T01 MTR_8g060470 37.162 148 82 5 146 289 330 470 7.62e-19 89.0
MsG0880044948.01.T01 MTR_8g461720 39.837 123 74 0 289 411 19 141 7.72e-18 80.1
MsG0880044948.01.T01 MTR_6g053030 31.466 232 146 6 127 353 333 556 4.38e-16 80.5
MsG0880044948.01.T01 MTR_6g053040 30.894 246 150 7 127 367 333 563 2.78e-15 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880044948.01.T01 AT1G24190 77.083 144 33 0 1 144 472 615 6.80e-73 248
MsG0880044948.01.T01 AT1G24190 77.083 144 33 0 1 144 472 615 7.15e-73 248
MsG0880044948.01.T01 AT1G24190 77.083 144 33 0 1 144 476 619 7.48e-73 248
MsG0880044948.01.T01 AT1G59890 77.778 144 32 0 1 144 361 504 3.63e-71 243
MsG0880044948.01.T01 AT1G59890 77.778 144 32 0 1 144 370 513 3.70e-71 243
MsG0880044948.01.T01 AT1G59890 77.778 144 32 0 1 144 365 508 3.77e-71 243
MsG0880044948.01.T01 AT1G59890 77.778 144 32 0 1 144 365 508 3.94e-71 243
MsG0880044948.01.T01 AT1G70060 75.694 144 35 0 1 144 490 633 4.14e-71 243
MsG0880044948.01.T01 AT1G70060 75.694 144 35 0 1 144 490 633 4.14e-71 243
MsG0880044948.01.T01 AT1G10450 73.611 144 38 0 1 144 348 491 1.71e-67 232
MsG0880044948.01.T01 AT1G10450 73.611 144 38 0 1 144 348 491 1.71e-67 232
MsG0880044948.01.T01 AT1G10450 73.611 144 38 0 1 144 399 542 2.82e-67 232
MsG0880044948.01.T01 AT5G15020 69.444 144 44 0 1 144 512 655 8.48e-65 225
MsG0880044948.01.T01 AT5G15020 69.444 144 44 0 1 144 512 655 8.70e-65 225
MsG0880044948.01.T01 AT3G01320 66.667 144 48 0 1 144 517 660 2.44e-61 215
MsG0880044948.01.T01 AT3G01320 66.667 144 48 0 1 144 505 648 2.48e-61 215

Find 107 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCTCCCTTTCTTTCTTAT+AGG 0.195539 8:-51919596 None:intergenic
CGTATTGAGGAGCATTTATC+AGG 0.277753 8:+51918570 MsG0880044948.01.T01:CDS
GTGCAGAGTTTAATATAGTT+TGG 0.279806 8:+51918850 MsG0880044948.01.T01:CDS
GAATGCATCTCGAGCCTTGC+CGG 0.335283 8:+51918779 MsG0880044948.01.T01:CDS
TGCAGAGTTTAATATAGTTT+GGG 0.348281 8:+51918851 MsG0880044948.01.T01:CDS
GTTGTTTAGCTCTAAATCTT+AGG 0.350313 8:+51918700 MsG0880044948.01.T01:intron
ACTCCTCCTGTTTCTGCTTC+AGG 0.353246 8:-51918815 None:intergenic
GTTAATGATGATGTAATTCC+AGG 0.355314 8:+51918534 MsG0880044948.01.T01:CDS
GCGCCCGTGAACAGGCTAAA+TGG 0.368488 8:+51920228 MsG0880044948.01.T01:CDS
TATCCTGAGGCAGACTTTAG+TGG 0.380331 8:+51920254 MsG0880044948.01.T01:CDS
CTTTGAGCGCGCCCGTGAAC+AGG 0.383475 8:+51920220 MsG0880044948.01.T01:CDS
AAATGCTCCTCAATACGAAT+TGG 0.386991 8:-51918564 None:intergenic
GGATGATGCTGTTACTGTTC+AGG 0.396465 8:+51919508 MsG0880044948.01.T01:CDS
CTTCAGAGCCCCGTTCAATC+TGG 0.415850 8:-51920024 None:intergenic
GCGGGAAGTAAAAGTAAGTT+TGG 0.419469 8:+51919851 MsG0880044948.01.T01:CDS
TGAGAAAGAAGCCGTGGAGC+TGG 0.421480 8:+51920109 MsG0880044948.01.T01:CDS
TAAAAGTAAGTTTGGCGACT+TGG 0.424964 8:+51919859 MsG0880044948.01.T01:CDS
AATTTCCTCAGCCTTACCTT+TGG 0.427769 8:-51920048 None:intergenic
GTTTAGAAACCAGATTGAAC+GGG 0.433909 8:+51920015 MsG0880044948.01.T01:CDS
AACCCGCCTGAAGCAGAAAC+AGG 0.442327 8:+51918809 MsG0880044948.01.T01:CDS
AAGAAGCCGTGGAGCTGGAG+AGG 0.445524 8:+51920114 MsG0880044948.01.T01:CDS
AGGTGCATTGAACGACTATA+CGG 0.453204 8:+51918720 MsG0880044948.01.T01:CDS
GAAGGAGTGCAAAGGGGCCC+TGG 0.455074 8:+51920178 MsG0880044948.01.T01:CDS
ATACGAATTGGAATATCTCC+TGG 0.466439 8:-51918552 None:intergenic
ATAAGAAAGAAAGGGAGAAC+TGG 0.469059 8:+51919599 MsG0880044948.01.T01:CDS
AAGAGGTGAAGGAGTGCAAA+GGG 0.470698 8:+51920171 MsG0880044948.01.T01:CDS
GATTCTCCTATAAGAAAGAA+AGG 0.476263 8:+51919590 MsG0880044948.01.T01:CDS
AAGAAGTGGTTGCAGCGGTA+TGG 0.481593 8:-51919652 None:intergenic
TGTTTAGATGCGAAGACGAC+AGG 0.486181 8:+51918261 MsG0880044948.01.T01:CDS
CACCTTATCATTCGAAGAAG+TGG 0.489482 8:-51919666 None:intergenic
TGAGGCAGACTTTAGTGGCC+TGG 0.492310 8:+51920259 MsG0880044948.01.T01:CDS
AGATATTCCAATTCGTATTG+AGG 0.495294 8:+51918557 MsG0880044948.01.T01:CDS
GAGAAAAGACATTATTTCAA+AGG 0.496041 8:+51919487 MsG0880044948.01.T01:CDS
AACCACTTCTTCGAATGATA+AGG 0.500316 8:+51919664 MsG0880044948.01.T01:CDS
AAGTATTTGTTTCTCTCAGA+AGG 0.500538 8:-51919386 None:intergenic
CCGGACTGGAGCGGAGATTG+TGG 0.507792 8:+51919568 MsG0880044948.01.T01:CDS
GAAAGAAAGAAATGTTCAGC+TGG 0.509029 8:+51920145 MsG0880044948.01.T01:CDS
CTCCTGTTTCTGCTTCAGGC+GGG 0.509322 8:-51918811 None:intergenic
GAGCAGGTTGTCGACCGGAC+TGG 0.513385 8:+51919554 MsG0880044948.01.T01:CDS
GGAGCTTGAGAACGTCGAGC+AGG 0.515269 8:+51919538 MsG0880044948.01.T01:CDS
CATCAACGTCAACATCCGCC+AGG 0.517036 8:-51919829 None:intergenic
AGAACCATTTAGCCTGTTCA+CGG 0.517311 8:-51920232 None:intergenic
AGTTACACCGGCGGGATCAC+TGG 0.518021 8:-51919450 None:intergenic
CAAATACTTGGCTGAAGTGA+AGG 0.518215 8:+51919400 MsG0880044948.01.T01:CDS
CTTCTGAAGATGTTGAGAAA+TGG 0.522741 8:+51919976 MsG0880044948.01.T01:CDS
TTTCTCTCAGAAGGCGTCAT+GGG 0.528761 8:-51919377 None:intergenic
TTCAGGCGGGTTAATATCAC+CGG 0.529652 8:-51918798 None:intergenic
GATTGTCGAAGATGGGAAGT+TGG 0.532050 8:+51920292 MsG0880044948.01.T01:CDS
CCTCCTGTTTCTGCTTCAGG+CGG 0.534175 8:-51918812 None:intergenic
GGCTCTGAAGTCCAAAGGTA+AGG 0.535598 8:+51920037 MsG0880044948.01.T01:CDS
CCACAATCTCCGCTCCAGTC+CGG 0.538383 8:-51919568 None:intergenic
AGAAGCCGTGGAGCTGGAGA+GGG 0.539026 8:+51920115 MsG0880044948.01.T01:CDS
GAAGGTGAGGAAGGCAGCCG+AGG 0.543484 8:+51919418 MsG0880044948.01.T01:CDS
TGACCATGGGCTTGATGTGA+TGG 0.544947 8:+51918743 MsG0880044948.01.T01:CDS
GAAGGCGTCATGGGCAACAT+TGG 0.546531 8:-51919368 None:intergenic
AAATGTTCAGCTGGAAGAAG+AGG 0.549268 8:+51920154 MsG0880044948.01.T01:CDS
GAACGACTATACGGTGACCA+TGG 0.550770 8:+51918729 MsG0880044948.01.T01:CDS
GGCTGAAGTGAAGGTGAGGA+AGG 0.554813 8:+51919409 MsG0880044948.01.T01:CDS
AACGACTATACGGTGACCAT+GGG 0.556588 8:+51918730 MsG0880044948.01.T01:CDS
TTCTGAGAGAAACAAATACT+TGG 0.558696 8:+51919388 MsG0880044948.01.T01:CDS
AACTGGTAAGCGTAATAATG+TGG 0.559507 8:+51919616 MsG0880044948.01.T01:CDS
GAACCATTTAGCCTGTTCAC+GGG 0.559652 8:-51920231 None:intergenic
TGTTACTGTTCAGGTTGATA+CGG 0.561529 8:+51919517 MsG0880044948.01.T01:CDS
CACTTCTTCGAATGATAAGG+TGG 0.562644 8:+51919667 MsG0880044948.01.T01:CDS
CGACAATCTTAAAAGCATCC+AGG 0.564584 8:-51920277 None:intergenic
AGGCCACTAAAGTCTGCCTC+AGG 0.565662 8:-51920257 None:intergenic
GTTTCTCTCAGAAGGCGTCA+TGG 0.566642 8:-51919378 None:intergenic
TATGGAGGAAAATGTTCCCC+TGG 0.570794 8:+51919811 MsG0880044948.01.T01:CDS
GGCGGATGTTGACGTTGATG+CGG 0.576424 8:+51919832 MsG0880044948.01.T01:CDS
CTTCTTCGAATGATAAGGTG+GGG 0.578357 8:+51919669 MsG0880044948.01.T01:CDS
TCAGCTGGAAGAAGAGGTGA+AGG 0.578466 8:+51920160 MsG0880044948.01.T01:CDS
GAAGCAGAAACAGGAGGAGT+GGG 0.580158 8:+51918818 MsG0880044948.01.T01:CDS
GCGGATGTTGACGTTGATGC+GGG 0.580992 8:+51919833 MsG0880044948.01.T01:CDS
AAACTATATTAAACTCTGCA+CGG 0.581815 8:-51918848 None:intergenic
TGAAGCAGAAACAGGAGGAG+TGG 0.583162 8:+51918817 MsG0880044948.01.T01:CDS
ATTCTCCTATAAGAAAGAAA+GGG 0.585326 8:+51919591 MsG0880044948.01.T01:CDS
TGTTTAGAAACCAGATTGAA+CGG 0.588524 8:+51920014 MsG0880044948.01.T01:CDS
GAAGAGGTGAAGGAGTGCAA+AGG 0.596063 8:+51920170 MsG0880044948.01.T01:CDS
ACGTCGAGCAGGTTGTCGAC+CGG 0.599231 8:+51919549 MsG0880044948.01.T01:CDS
ATCAACGTCAACATCCGCCA+GGG 0.600126 8:-51919828 None:intergenic
AACTACTGAGAAAGAAGCCG+TGG 0.606344 8:+51920103 MsG0880044948.01.T01:CDS
AAGGTGAGGAAGGCAGCCGA+GGG 0.608404 8:+51919419 MsG0880044948.01.T01:CDS
TGCAACAAGTAAGAAAGTTG+AGG 0.611189 8:+51918497 MsG0880044948.01.T01:CDS
TTACGATGAGTTACACCGGC+GGG 0.613809 8:-51919458 None:intergenic
TGTTGAGAAATGGCGACACA+AGG 0.616457 8:+51919986 MsG0880044948.01.T01:CDS
GAAGTCCAAAGGTAAGGCTG+AGG 0.617587 8:+51920043 MsG0880044948.01.T01:CDS
GGCTAAATGGTTCTATCCTG+AGG 0.617980 8:+51920241 MsG0880044948.01.T01:CDS
AACGGGGCTCTGAAGTCCAA+AGG 0.620936 8:+51920032 MsG0880044948.01.T01:CDS
ATCACTGGTAGCATATCCCT+CGG 0.627935 8:-51919435 None:intergenic
ACTTCTTCGAATGATAAGGT+GGG 0.628732 8:+51919668 MsG0880044948.01.T01:CDS
ACTGGTAAGCGTAATAATGT+GGG 0.628766 8:+51919617 MsG0880044948.01.T01:CDS
TTCTTCGAATGATAAGGTGG+GGG 0.629845 8:+51919670 MsG0880044948.01.T01:CDS
GGTTGTCGACCGGACTGGAG+CGG 0.633518 8:+51919559 MsG0880044948.01.T01:CDS
GGAAATTGCGAAGAGTTCTG+AGG 0.640783 8:+51920064 MsG0880044948.01.T01:CDS
GCGGGTTAATATCACCGGCA+AGG 0.642210 8:-51918793 None:intergenic
TGCTTTACGATGAGTTACAC+CGG 0.645166 8:-51919462 None:intergenic
CTTCCATCACATCAAGCCCA+TGG 0.664006 8:-51918746 None:intergenic
ACTTGGCTGAAGTGAAGGTG+AGG 0.666702 8:+51919405 MsG0880044948.01.T01:CDS
TATGCTACCAGTGATCCCGC+CGG 0.678025 8:+51919443 MsG0880044948.01.T01:CDS
AGAATCCCTCTCCAGCTCCA+CGG 0.678447 8:-51920120 None:intergenic
TTTAGAAACCAGATTGAACG+GGG 0.678672 8:+51920016 MsG0880044948.01.T01:CDS
ATTCGAAGAAGTGGTTGCAG+CGG 0.679274 8:-51919657 None:intergenic
GGAGGAAAATGTTCCCCTGG+CGG 0.689901 8:+51919814 MsG0880044948.01.T01:CDS
CCGCCTGAAGCAGAAACAGG+AGG 0.700575 8:+51918812 MsG0880044948.01.T01:CDS
TCAACGTCAACATCCGCCAG+GGG 0.707014 8:-51919827 None:intergenic
AGAGGTGAAGGAGTGCAAAG+GGG 0.716241 8:+51920172 MsG0880044948.01.T01:CDS
TTTACGATGAGTTACACCGG+CGG 0.801865 8:-51919459 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAAAAAAAAATATTA+TGG - Chr8:51918435-51918454 None:intergenic 0.0%
!! TATTTCTTAACTATATTAAA+AGG - Chr8:51919090-51919109 None:intergenic 10.0%
!! TTAAATAACTTACTATTTAA+AGG - Chr8:51919037-51919056 None:intergenic 10.0%
!!! AAATTAAAAGGTATTTTTTA+AGG - Chr8:51918315-51918334 None:intergenic 10.0%
!!! AATTAAAAGGTATTTTTTAA+GGG - Chr8:51918314-51918333 None:intergenic 10.0%
!!! GAAATATTTAAAATTAGTTT+AGG + Chr8:51919104-51919123 MsG0880044948.01.T01:intron 10.0%
!! AAAGCATATAATACATAATA+GGG - Chr8:51919766-51919785 None:intergenic 15.0%
!! AATTTATCATAGCATATAAA+TGG + Chr8:51918620-51918639 MsG0880044948.01.T01:intron 15.0%
!! TAAAGCATATAATACATAAT+AGG - Chr8:51919767-51919786 None:intergenic 15.0%
!!! TTAATTTATTTTGTATTGGT+TGG + Chr8:51918333-51918352 MsG0880044948.01.T01:intron 15.0%
!! ATATAATACATAATAGGGAA+GGG - Chr8:51919761-51919780 None:intergenic 20.0%
!! ATCCATTGAAAGAAAATATT+TGG + Chr8:51919058-51919077 MsG0880044948.01.T01:intron 20.0%
!! GTATAATTAATTTACTTCTG+TGG + Chr8:51919727-51919746 MsG0880044948.01.T01:intron 20.0%
!!! AACCAAATATTTTCTTTCAA+TGG - Chr8:51919063-51919082 None:intergenic 20.0%
!!! CAATTCTTGATTCTTTTTAA+CGG + Chr8:51918993-51919012 MsG0880044948.01.T01:intron 20.0%
! AAACTATATTAAACTCTGCA+CGG - Chr8:51918851-51918870 None:intergenic 25.0%
! AGAATCAAGAATTGTGTTAT+TGG - Chr8:51918987-51919006 None:intergenic 25.0%
! ATAAACTCTTGAATAAGGAA+GGG + Chr8:51919236-51919255 MsG0880044948.01.T01:intron 25.0%
! ATTCAAGAGTTTATGGATAT+CGG - Chr8:51919230-51919249 None:intergenic 25.0%
! ATTCTCCTATAAGAAAGAAA+GGG + Chr8:51919591-51919610 MsG0880044948.01.T01:CDS 25.0%
! CATATAATACATAATAGGGA+AGG - Chr8:51919762-51919781 None:intergenic 25.0%
! GAGAAAAGACATTATTTCAA+AGG + Chr8:51919487-51919506 MsG0880044948.01.T01:CDS 25.0%
! TATCCATAAACTCTTGAATA+AGG + Chr8:51919231-51919250 MsG0880044948.01.T01:intron 25.0%
! TGCAGAGTTTAATATAGTTT+GGG + Chr8:51918851-51918870 MsG0880044948.01.T01:CDS 25.0%
! TGTCAACAAATAATGAAAAG+AGG - Chr8:51919329-51919348 None:intergenic 25.0%
!! ATTTGATCGTCAAATTTTGT+AGG + Chr8:51919786-51919805 MsG0880044948.01.T01:intron 25.0%
!!! ACAAAGAGTTTAATTTTCGA+AGG + Chr8:51919705-51919724 MsG0880044948.01.T01:CDS 25.0%
!!! TTCTACTTTTTGGTTAGTTT+TGG + Chr8:51918378-51918397 MsG0880044948.01.T01:intron 25.0%
AGAACAGAACACAAAATATC+AGG - Chr8:51918661-51918680 None:intergenic 30.0%
AGATATTCCAATTCGTATTG+AGG + Chr8:51918557-51918576 MsG0880044948.01.T01:CDS 30.0%
CATAAACTCTTGAATAAGGA+AGG + Chr8:51919235-51919254 MsG0880044948.01.T01:intron 30.0%
CTTCCTTATTCAAGAGTTTA+TGG - Chr8:51919237-51919256 None:intergenic 30.0%
GATTCTCCTATAAGAAAGAA+AGG + Chr8:51919590-51919609 MsG0880044948.01.T01:CDS 30.0%
GTGCAGAGTTTAATATAGTT+TGG + Chr8:51918850-51918869 MsG0880044948.01.T01:CDS 30.0%
TAAACTCTTGAATAAGGAAG+GGG + Chr8:51919237-51919256 MsG0880044948.01.T01:intron 30.0%
TGTTTAGAAACCAGATTGAA+CGG + Chr8:51920014-51920033 MsG0880044948.01.T01:CDS 30.0%
! AAGTATTTGTTTCTCTCAGA+AGG - Chr8:51919389-51919408 None:intergenic 30.0%
! CAAATTTTGTAGGTATATGG+AGG + Chr8:51919796-51919815 MsG0880044948.01.T01:intron 30.0%
! CGTCAAATTTTGTAGGTATA+TGG + Chr8:51919793-51919812 MsG0880044948.01.T01:intron 30.0%
! CTTGATTCTTTTTAACGGTA+TGG + Chr8:51918998-51919017 MsG0880044948.01.T01:intron 30.0%
! GTCATCAAAATATTTTGCCA+GGG - Chr8:51920198-51920217 None:intergenic 30.0%
! GTTAATGATGATGTAATTCC+AGG + Chr8:51918534-51918553 MsG0880044948.01.T01:CDS 30.0%
! TTCTGAGAGAAACAAATACT+TGG + Chr8:51919388-51919407 MsG0880044948.01.T01:CDS 30.0%
!! GTTGTTTAGCTCTAAATCTT+AGG + Chr8:51918700-51918719 MsG0880044948.01.T01:intron 30.0%
!!! CTGGCAAAATATTTTGATGA+CGG + Chr8:51920197-51920216 MsG0880044948.01.T01:CDS 30.0%
!!! CTTTTAAGATTGTCGAAGAT+GGG + Chr8:51920285-51920304 MsG0880044948.01.T01:CDS 30.0%
AAATGCTCCTCAATACGAAT+TGG - Chr8:51918567-51918586 None:intergenic 35.0%
AACCACTTCTTCGAATGATA+AGG + Chr8:51919664-51919683 MsG0880044948.01.T01:CDS 35.0%
AACTGGTAAGCGTAATAATG+TGG + Chr8:51919616-51919635 MsG0880044948.01.T01:CDS 35.0%
ACAAAAAGCTTGAGCACTAA+AGG + Chr8:51918942-51918961 MsG0880044948.01.T01:CDS 35.0%
ACTGGTAAGCGTAATAATGT+GGG + Chr8:51919617-51919636 MsG0880044948.01.T01:CDS 35.0%
ACTTCTTCGAATGATAAGGT+GGG + Chr8:51919668-51919687 MsG0880044948.01.T01:CDS 35.0%
ATAAGAAAGAAAGGGAGAAC+TGG + Chr8:51919599-51919618 MsG0880044948.01.T01:CDS 35.0%
ATACGAATTGGAATATCTCC+TGG - Chr8:51918555-51918574 None:intergenic 35.0%
CTGTTCTGATACTATCTTCT+TGG + Chr8:51918674-51918693 MsG0880044948.01.T01:intron 35.0%
GAAAGAAAGAAATGTTCAGC+TGG + Chr8:51920145-51920164 MsG0880044948.01.T01:CDS 35.0%
GATGTTTCTTCTCCATAACA+TGG - Chr8:51919928-51919947 None:intergenic 35.0%
GTTCTCCCTTTCTTTCTTAT+AGG - Chr8:51919599-51919618 None:intergenic 35.0%
GTTTAGAAACCAGATTGAAC+GGG + Chr8:51920015-51920034 MsG0880044948.01.T01:CDS 35.0%
TAAAAGTAAGTTTGGCGACT+TGG + Chr8:51919859-51919878 MsG0880044948.01.T01:CDS 35.0%
TAACCAAAAAGTAGAACACG+TGG - Chr8:51918374-51918393 None:intergenic 35.0%
TCTCCATAACATGGTTCATT+AGG - Chr8:51919919-51919938 None:intergenic 35.0%
TGCAACAAGTAAGAAAGTTG+AGG + Chr8:51918497-51918516 MsG0880044948.01.T01:CDS 35.0%
TTTAGAAACCAGATTGAACG+GGG + Chr8:51920016-51920035 MsG0880044948.01.T01:CDS 35.0%
! AAGCTTTTACTTTAAGCAGC+AGG + Chr8:51918917-51918936 MsG0880044948.01.T01:CDS 35.0%
! CGTCATCAAAATATTTTGCC+AGG - Chr8:51920199-51920218 None:intergenic 35.0%
! CTTCTGAAGATGTTGAGAAA+TGG + Chr8:51919976-51919995 MsG0880044948.01.T01:CDS 35.0%
!! TGTTACTGTTCAGGTTGATA+CGG + Chr8:51919517-51919536 MsG0880044948.01.T01:CDS 35.0%
!!! GCTTTTAAGATTGTCGAAGA+TGG + Chr8:51920284-51920303 MsG0880044948.01.T01:CDS 35.0%
AAATGTTCAGCTGGAAGAAG+AGG + Chr8:51920154-51920173 MsG0880044948.01.T01:CDS 40.0%
AATTTCCTCAGCCTTACCTT+TGG - Chr8:51920051-51920070 None:intergenic 40.0%
AGAACCATTTAGCCTGTTCA+CGG - Chr8:51920235-51920254 None:intergenic 40.0%
AGCCCAAACCAATATTAGCA+GGG + Chr8:51919172-51919191 MsG0880044948.01.T01:intron 40.0%
AGGTGCATTGAACGACTATA+CGG + Chr8:51918720-51918739 MsG0880044948.01.T01:CDS 40.0%
CAAATACTTGGCTGAAGTGA+AGG + Chr8:51919400-51919419 MsG0880044948.01.T01:CDS 40.0%
CACCTTATCATTCGAAGAAG+TGG - Chr8:51919669-51919688 None:intergenic 40.0%
CACTTCTTCGAATGATAAGG+TGG + Chr8:51919667-51919686 MsG0880044948.01.T01:CDS 40.0%
CCATAACATGGTTCATTAGG+AGG - Chr8:51919916-51919935 None:intergenic 40.0%
CCTCCTAATGAACCATGTTA+TGG + Chr8:51919913-51919932 MsG0880044948.01.T01:intron 40.0%
CTTCTTCGAATGATAAGGTG+GGG + Chr8:51919669-51919688 MsG0880044948.01.T01:CDS 40.0%
CTTGAATAAGGAAGGGGATA+CGG + Chr8:51919243-51919262 MsG0880044948.01.T01:intron 40.0%
GCGGGAAGTAAAAGTAAGTT+TGG + Chr8:51919851-51919870 MsG0880044948.01.T01:CDS 40.0%
GTTCATTAGGAGGATCCTAA+GGG - Chr8:51919906-51919925 None:intergenic 40.0%
TGCTTTACGATGAGTTACAC+CGG - Chr8:51919465-51919484 None:intergenic 40.0%
TTCTTCGAATGATAAGGTGG+GGG + Chr8:51919670-51919689 MsG0880044948.01.T01:CDS 40.0%
!! CATCACATGGTTGATTTGAG+AGG + Chr8:51918401-51918420 MsG0880044948.01.T01:intron 40.0%
!! CGACAATCTTAAAAGCATCC+AGG - Chr8:51920280-51920299 None:intergenic 40.0%
!! CGTATTGAGGAGCATTTATC+AGG + Chr8:51918570-51918589 MsG0880044948.01.T01:CDS 40.0%
!! GAAGAGTTCTGAGGAAAAAC+TGG + Chr8:51920073-51920092 MsG0880044948.01.T01:CDS 40.0%
!! TTGCCACGTGTTCTACTTTT+TGG + Chr8:51918368-51918387 MsG0880044948.01.T01:intron 40.0%
!!! TGGTTAGTTTTGGCATCACA+TGG + Chr8:51918388-51918407 MsG0880044948.01.T01:intron 40.0%
AAACCAATATTAGCAGGGCG+TGG + Chr8:51919177-51919196 MsG0880044948.01.T01:intron 45.0%
AACGACTATACGGTGACCAT+GGG + Chr8:51918730-51918749 MsG0880044948.01.T01:CDS 45.0%
AACTACTGAGAAAGAAGCCG+TGG + Chr8:51920103-51920122 MsG0880044948.01.T01:CDS 45.0%
ATCACTGGTAGCATATCCCT+CGG - Chr8:51919438-51919457 None:intergenic 45.0%
ATTCCGGAGAATATGCCCTT+AGG + Chr8:51919888-51919907 MsG0880044948.01.T01:intron 45.0%
ATTCGAAGAAGTGGTTGCAG+CGG - Chr8:51919660-51919679 None:intergenic 45.0%
CAGCCCAAACCAATATTAGC+AGG + Chr8:51919171-51919190 MsG0880044948.01.T01:intron 45.0%
GAACCATTTAGCCTGTTCAC+GGG - Chr8:51920234-51920253 None:intergenic 45.0%
GATTGTCGAAGATGGGAAGT+TGG + Chr8:51920292-51920311 MsG0880044948.01.T01:CDS 45.0%
GGAAATTGCGAAGAGTTCTG+AGG + Chr8:51920064-51920083 MsG0880044948.01.T01:CDS 45.0%
GGATGATGCTGTTACTGTTC+AGG + Chr8:51919508-51919527 MsG0880044948.01.T01:CDS 45.0%
GGTTCATTAGGAGGATCCTA+AGG - Chr8:51919907-51919926 None:intergenic 45.0%
TATCCTGAGGCAGACTTTAG+TGG + Chr8:51920254-51920273 MsG0880044948.01.T01:CDS 45.0%
TATGGAGGAAAATGTTCCCC+TGG + Chr8:51919811-51919830 MsG0880044948.01.T01:CDS 45.0%
TGTTGAGAAATGGCGACACA+AGG + Chr8:51919986-51920005 MsG0880044948.01.T01:CDS 45.0%
TGTTTAGATGCGAAGACGAC+AGG + Chr8:51918261-51918280 MsG0880044948.01.T01:CDS 45.0%
TTTACGATGAGTTACACCGG+CGG - Chr8:51919462-51919481 None:intergenic 45.0%
! AAGAGGTGAAGGAGTGCAAA+GGG + Chr8:51920171-51920190 MsG0880044948.01.T01:CDS 45.0%
! ACGCCCTGCTAATATTGGTT+TGG - Chr8:51919178-51919197 None:intergenic 45.0%
! ATAAGGTGGGGGAGTCTTTT+TGG + Chr8:51919681-51919700 MsG0880044948.01.T01:CDS 45.0%
! GATCCTAAGGGCATATTCTC+CGG - Chr8:51919894-51919913 None:intergenic 45.0%
! GGCTAAATGGTTCTATCCTG+AGG + Chr8:51920241-51920260 MsG0880044948.01.T01:CDS 45.0%
!! CGCCCTGCTAATATTGGTTT+GGG - Chr8:51919177-51919196 None:intergenic 45.0%
!! TAAGTTTGGCGACTTGGTGA+TGG + Chr8:51919865-51919884 MsG0880044948.01.T01:intron 45.0%
!! TTCAGGCGGGTTAATATCAC+CGG - Chr8:51918801-51918820 None:intergenic 45.0%
!! TTTCTCTCAGAAGGCGTCAT+GGG - Chr8:51919380-51919399 None:intergenic 45.0%
!! ACAAAATAAATTAAATTAAA+AGG - Chr8:51918327-51918346 None:intergenic 5.0%
!!! AAATATTTAAAATTAGTTTA+GGG + Chr8:51919105-51919124 MsG0880044948.01.T01:intron 5.0%
!!! TAATTTAATTTATTTTGTAT+TGG + Chr8:51918329-51918348 MsG0880044948.01.T01:intron 5.0%
!!! TTTTTTTTATTTATACTTTT+AGG + Chr8:51918442-51918461 MsG0880044948.01.T01:intron 5.0%
AAGAAGTGGTTGCAGCGGTA+TGG - Chr8:51919655-51919674 None:intergenic 50.0%
ACTTGGCTGAAGTGAAGGTG+AGG + Chr8:51919405-51919424 MsG0880044948.01.T01:CDS 50.0%
ATCAACGTCAACATCCGCCA+GGG - Chr8:51919831-51919850 None:intergenic 50.0%
CAATATTAGCAGGGCGTGGT+GGG + Chr8:51919181-51919200 MsG0880044948.01.T01:intron 50.0%
CTTCCATCACATCAAGCCCA+TGG - Chr8:51918749-51918768 None:intergenic 50.0%
GAACGACTATACGGTGACCA+TGG + Chr8:51918729-51918748 MsG0880044948.01.T01:CDS 50.0%
GAAGCAGAAACAGGAGGAGT+GGG + Chr8:51918818-51918837 MsG0880044948.01.T01:CDS 50.0%
GAAGTCCAAAGGTAAGGCTG+AGG + Chr8:51920043-51920062 MsG0880044948.01.T01:CDS 50.0%
GAATAAGGAAGGGGATACGG+AGG + Chr8:51919246-51919265 MsG0880044948.01.T01:intron 50.0%
TCAGCTGGAAGAAGAGGTGA+AGG + Chr8:51920160-51920179 MsG0880044948.01.T01:CDS 50.0%
TGAAGCAGAAACAGGAGGAG+TGG + Chr8:51918817-51918836 MsG0880044948.01.T01:CDS 50.0%
TGACCATGGGCTTGATGTGA+TGG + Chr8:51918743-51918762 MsG0880044948.01.T01:CDS 50.0%
TTACGATGAGTTACACCGGC+GGG - Chr8:51919461-51919480 None:intergenic 50.0%
! AGAGGTGAAGGAGTGCAAAG+GGG + Chr8:51920172-51920191 MsG0880044948.01.T01:CDS 50.0%
! GAAGAGGTGAAGGAGTGCAA+AGG + Chr8:51920170-51920189 MsG0880044948.01.T01:CDS 50.0%
!! ACTCCTCCTGTTTCTGCTTC+AGG - Chr8:51918818-51918837 None:intergenic 50.0%
!! GGCTCTGAAGTCCAAAGGTA+AGG + Chr8:51920037-51920056 MsG0880044948.01.T01:CDS 50.0%
!! GTTTCTCTCAGAAGGCGTCA+TGG - Chr8:51919381-51919400 None:intergenic 50.0%
AACCCGCCTGAAGCAGAAAC+AGG + Chr8:51918809-51918828 MsG0880044948.01.T01:CDS 55.0%
AGAATCCCTCTCCAGCTCCA+CGG - Chr8:51920123-51920142 None:intergenic 55.0%
AGGCCACTAAAGTCTGCCTC+AGG - Chr8:51920260-51920279 None:intergenic 55.0%
CATCAACGTCAACATCCGCC+AGG - Chr8:51919832-51919851 None:intergenic 55.0%
CCAATATTAGCAGGGCGTGG+TGG + Chr8:51919180-51919199 MsG0880044948.01.T01:intron 55.0%
CCACCACGCCCTGCTAATAT+TGG - Chr8:51919183-51919202 None:intergenic 55.0%
CTTCAGAGCCCCGTTCAATC+TGG - Chr8:51920027-51920046 None:intergenic 55.0%
GAATGCATCTCGAGCCTTGC+CGG + Chr8:51918779-51918798 MsG0880044948.01.T01:CDS 55.0%
GCGGATGTTGACGTTGATGC+GGG + Chr8:51919833-51919852 MsG0880044948.01.T01:CDS 55.0%
GGAGGAAAATGTTCCCCTGG+CGG + Chr8:51919814-51919833 MsG0880044948.01.T01:CDS 55.0%
GGCGGATGTTGACGTTGATG+CGG + Chr8:51919832-51919851 MsG0880044948.01.T01:CDS 55.0%
GGCTGAAGTGAAGGTGAGGA+AGG + Chr8:51919409-51919428 MsG0880044948.01.T01:CDS 55.0%
TATGCTACCAGTGATCCCGC+CGG + Chr8:51919443-51919462 MsG0880044948.01.T01:CDS 55.0%
TCAACGTCAACATCCGCCAG+GGG - Chr8:51919830-51919849 None:intergenic 55.0%
TGAGAAAGAAGCCGTGGAGC+TGG + Chr8:51920109-51920128 MsG0880044948.01.T01:CDS 55.0%
TGAGGCAGACTTTAGTGGCC+TGG + Chr8:51920259-51920278 MsG0880044948.01.T01:CDS 55.0%
! GCGGGTTAATATCACCGGCA+AGG - Chr8:51918796-51918815 None:intergenic 55.0%
!! AACGGGGCTCTGAAGTCCAA+AGG + Chr8:51920032-51920051 MsG0880044948.01.T01:CDS 55.0%
!! CCTCCTGTTTCTGCTTCAGG+CGG - Chr8:51918815-51918834 None:intergenic 55.0%
!! CTCCTGTTTCTGCTTCAGGC+GGG - Chr8:51918814-51918833 None:intergenic 55.0%
!! GAAGGCGTCATGGGCAACAT+TGG - Chr8:51919371-51919390 None:intergenic 55.0%
!! GGCGACTTGGTGATGGATTC+CGG + Chr8:51919872-51919891 MsG0880044948.01.T01:intron 55.0%
AAGAAGCCGTGGAGCTGGAG+AGG + Chr8:51920114-51920133 MsG0880044948.01.T01:CDS 60.0%
AAGGTGAGGAAGGCAGCCGA+GGG + Chr8:51919419-51919438 MsG0880044948.01.T01:CDS 60.0%
ACGTCGAGCAGGTTGTCGAC+CGG + Chr8:51919549-51919568 MsG0880044948.01.T01:CDS 60.0%
AGAAGCCGTGGAGCTGGAGA+GGG + Chr8:51920115-51920134 MsG0880044948.01.T01:CDS 60.0%
AGTTACACCGGCGGGATCAC+TGG - Chr8:51919453-51919472 None:intergenic 60.0%
CCACAATCTCCGCTCCAGTC+CGG - Chr8:51919571-51919590 None:intergenic 60.0%
CCGCCTGAAGCAGAAACAGG+AGG + Chr8:51918812-51918831 MsG0880044948.01.T01:CDS 60.0%
GCGCCCGTGAACAGGCTAAA+TGG + Chr8:51920228-51920247 MsG0880044948.01.T01:CDS 60.0%
GGAGCTTGAGAACGTCGAGC+AGG + Chr8:51919538-51919557 MsG0880044948.01.T01:CDS 60.0%
CTTTGAGCGCGCCCGTGAAC+AGG + Chr8:51920220-51920239 MsG0880044948.01.T01:CDS 65.0%
GAAGGTGAGGAAGGCAGCCG+AGG + Chr8:51919418-51919437 MsG0880044948.01.T01:CDS 65.0%
GAGCAGGTTGTCGACCGGAC+TGG + Chr8:51919554-51919573 MsG0880044948.01.T01:CDS 65.0%
! CCGGACTGGAGCGGAGATTG+TGG + Chr8:51919568-51919587 MsG0880044948.01.T01:CDS 65.0%
! GAAGGAGTGCAAAGGGGCCC+TGG + Chr8:51920178-51920197 MsG0880044948.01.T01:CDS 65.0%
! GGTTGTCGACCGGACTGGAG+CGG + Chr8:51919559-51919578 MsG0880044948.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 51918233 51920328 51918233 ID=MsG0880044948.01;Name=MsG0880044948.01
Chr8 mRNA 51918233 51920328 51918233 ID=MsG0880044948.01.T01;Parent=MsG0880044948.01;Name=MsG0880044948.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0.4|0.33|1|1|1|6|0|412
Chr8 exon 51918233 51918282 51918233 ID=MsG0880044948.01.T01:exon:22144;Parent=MsG0880044948.01.T01
Chr8 exon 51918464 51918591 51918464 ID=MsG0880044948.01.T01:exon:22145;Parent=MsG0880044948.01.T01
Chr8 exon 51918709 51918963 51918709 ID=MsG0880044948.01.T01:exon:22146;Parent=MsG0880044948.01.T01
Chr8 exon 51919366 51919726 51919366 ID=MsG0880044948.01.T01:exon:22147;Parent=MsG0880044948.01.T01
Chr8 exon 51919808 51919880 51919808 ID=MsG0880044948.01.T01:exon:22148;Parent=MsG0880044948.01.T01
Chr8 exon 51919957 51920328 51919957 ID=MsG0880044948.01.T01:exon:22149;Parent=MsG0880044948.01.T01
Chr8 CDS 51918233 51918282 51918233 ID=MsG0880044948.01.T01:cds;Parent=MsG0880044948.01.T01
Chr8 CDS 51918464 51918591 51918464 ID=MsG0880044948.01.T01:cds;Parent=MsG0880044948.01.T01
Chr8 CDS 51918709 51918963 51918709 ID=MsG0880044948.01.T01:cds;Parent=MsG0880044948.01.T01
Chr8 CDS 51919366 51919726 51919366 ID=MsG0880044948.01.T01:cds;Parent=MsG0880044948.01.T01
Chr8 CDS 51919808 51919880 51919808 ID=MsG0880044948.01.T01:cds;Parent=MsG0880044948.01.T01
Chr8 CDS 51919957 51920328 51919957 ID=MsG0880044948.01.T01:cds;Parent=MsG0880044948.01.T01
Gene Sequence

>MsG0880044948.01.T01

ATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGCGAAGACGACAGGTTTGAACTTGATATGTTGTTAGAGTCTATAAATGCAACAAGTAAGAAAGTTGAGGAGATCATAGAAAAAGTTAATGATGATGTAATTCCAGGAGATATTCCAATTCGTATTGAGGAGCATTTATCAGCTCTAAATCTTAGGTGCATTGAACGACTATACGGTGACCATGGGCTTGATGTGATGGAAGTGTTGAAAAAGAATGCATCTCGAGCCTTGCCGGTGATATTAACCCGCCTGAAGCAGAAACAGGAGGAGTGGGCAAGATGCCGTGCAGAGTTTAATATAGTTTGGGCTGATGTATATGCGAAGAATTATCATAAATCACTTGATCATCGAAGCTTTTACTTTAAGCAGCAGGATACAAAAAGCTTGAGCACTAAAGAACCAATGTTGCCCATGACGCCTTCTGAGAGAAACAAATACTTGGCTGAAGTGAAGGTGAGGAAGGCAGCCGAGGGATATGCTACCAGTGATCCCGCCGGTGTAACTCATCGTAAAGCAAAGAGAAAAGACATTATTTCAAAGGATGATGCTGTTACTGTTCAGGTTGATACGGAGCTTGAGAACGTCGAGCAGGTTGTCGACCGGACTGGAGCGGAGATTGTGGATTCTCCTATAAGAAAGAAAGGGAGAACTGGTAAGCGTAATAATGTGGGTGATAAGAGCGTCCATACCGCTGCAACCACTTCTTCGAATGATAAGGTGGGGGAGTCTTTTTGGCACAAAGAGTTTAATTTTCGAAGGTATATGGAGGAAAATGTTCCCCTGGCGGATGTTGACGTTGATGCGGGAAGTAAAAGTAAGTTTGGCGACTTGAGAAAAAAATATAAAGATGCTTCTGAAGATGTTGAGAAATGGCGACACAAGGCAACATGTTTAGAAACCAGATTGAACGGGGCTCTGAAGTCCAAAGGTAAGGCTGAGGAAATTGCGAAGAGTTCTGAGGAAAAACTGGCGACTTTAACTACTGAGAAAGAAGCCGTGGAGCTGGAGAGGGATTCTTTGAAAGAAAGAAATGTTCAGCTGGAAGAAGAGGTGAAGGAGTGCAAAGGGGCCCTGGCAAAATATTTTGATGACGGCTTTGAGCGCGCCCGTGAACAGGCTAAATGGTTCTATCCTGAGGCAGACTTTAGTGGCCTGGATGCTTTTAAGATTGTCGAAGATGGGAAGTTGGTCGATGAAGAATGA

Protein sequence

>MsG0880044948.01.T01

MRKNQYEESLFRCEDDRFELDMLLESINATSKKVEEIIEKVNDDVIPGDIPIRIEEHLSALNLRCIERLYGDHGLDVMEVLKKNASRALPVILTRLKQKQEEWARCRAEFNIVWADVYAKNYHKSLDHRSFYFKQQDTKSLSTKEPMLPMTPSERNKYLAEVKVRKAAEGYATSDPAGVTHRKAKRKDIISKDDAVTVQVDTELENVEQVVDRTGAEIVDSPIRKKGRTGKRNNVGDKSVHTAATTSSNDKVGESFWHKEFNFRRYMEENVPLADVDVDAGSKSKFGDLRKKYKDASEDVEKWRHKATCLETRLNGALKSKGKAEEIAKSSEEKLATLTTEKEAVELERDSLKERNVQLEEEVKECKGALAKYFDDGFERAREQAKWFYPEADFSGLDAFKIVEDGKLVDEE*