AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024569.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024569.01.T01 MTR_5g013280 88.933 253 15 1 117 356 43 295 6.49e-146 414
MsG0580024569.01.T01 MTR_5g013280 89.113 248 14 1 122 356 1 248 9.83e-144 407
MsG0580024569.01.T01 MTR_5g013280 88.745 231 13 1 117 334 43 273 9.12e-128 368
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024569.01.T01 AT4G17540 39.600 250 106 5 117 349 61 282 1.86e-40 144

Find 88 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCCATTTACTTTGAAATT+TGG 0.141463 5:+6440641 MsG0580024569.01.T01:CDS
TGTCCAAATTTCAAAGTAAA+TGG 0.158302 5:-6440644 None:intergenic
GTTGGAAGCCCTTTAAATTT+AGG 0.210875 5:+6440710 MsG0580024569.01.T01:CDS
GGACAAGTATTTACTGGTTT+TGG 0.211578 5:+6440662 MsG0580024569.01.T01:CDS
TAAGGGAGATCTCACGGTTT+AGG 0.233689 5:-6443982 None:intergenic
GCTTGCACGTTATCGCTTAA+AGG 0.246676 5:+6443953 MsG0580024569.01.T01:three_prime_UTR
CTTCCAATTTCACATTACTA+TGG 0.260859 5:+6440761 MsG0580024569.01.T01:CDS
AGAGTAGTACCTAAATTTAA+AGG 0.274370 5:-6440719 None:intergenic
AATCCATAGTAATGTGAAAT+TGG 0.287540 5:-6440764 None:intergenic
AAGGGAGATCTCACGGTTTA+GGG 0.290126 5:-6443981 None:intergenic
TCTTATTCTGAATTTGTTGT+AGG 0.290258 5:+6440932 MsG0580024569.01.T01:CDS
GCCACAGGCGCAGTCAGTTC+TGG 0.305051 5:+6442029 MsG0580024569.01.T01:CDS
TTTCACATTACTATGGATTT+CGG 0.306882 5:+6440768 MsG0580024569.01.T01:CDS
TTCATATAGTTGAGGAAGAT+TGG 0.320215 5:+6441116 MsG0580024569.01.T01:intron
AAATTTGGACAAGTATTTAC+TGG 0.322518 5:+6440656 MsG0580024569.01.T01:CDS
CAAGTTCTTCAATCATTTGC+TGG 0.323313 5:-6443746 None:intergenic
TGTGAAATTGGAAGAGAATA+AGG 0.333431 5:-6440752 None:intergenic
CAGTTATCTCAAGGTCTAGT+AGG 0.335039 5:+6442086 MsG0580024569.01.T01:CDS
CTACAAGTTGCCCCTGCTAA+TGG 0.340138 5:+6444023 MsG0580024569.01.T01:three_prime_UTR
GTTGGATGTGGAGTTGGTTT+CGG 0.345001 5:+6441161 MsG0580024569.01.T01:CDS
CTTGCACGTTATCGCTTAAA+GGG 0.350496 5:+6443954 MsG0580024569.01.T01:three_prime_UTR
ACAAAGATGATGATGAAGTT+TGG 0.354809 5:+6441951 MsG0580024569.01.T01:CDS
ACCCGGATTAAACGGTAAAC+TGG 0.357165 5:-6441982 None:intergenic
AGAACTAGCTTCAAGTTTGC+TGG 0.358017 5:-6443823 None:intergenic
TCCCAGTTTACCGTTTAATC+CGG 0.367717 5:+6441980 MsG0580024569.01.T01:CDS
TACAAGTTGCCCCTGCTAAT+GGG 0.377837 5:+6444024 MsG0580024569.01.T01:three_prime_UTR
AAACTTGAAGCTAGTTCTTC+AGG 0.400339 5:+6443828 MsG0580024569.01.T01:CDS
TCAACCAATGAACATTGGTT+TGG 0.414979 5:+6442112 MsG0580024569.01.T01:CDS
TCTGCAAAATCCACTGTTGA+AGG 0.419732 5:+6442214 MsG0580024569.01.T01:CDS
AAAGCCAAACCAATGTTCAT+TGG 0.422194 5:-6442116 None:intergenic
GAGTAGTACCTAAATTTAAA+GGG 0.424503 5:-6440718 None:intergenic
GTGGGTGTTGGATGTGGAGT+TGG 0.433318 5:+6441155 MsG0580024569.01.T01:CDS
GGCAATGCACCCGGATTAAA+CGG 0.440473 5:-6441990 None:intergenic
CATTAGCAGGGGCAACTTGT+AGG 0.443920 5:-6444022 None:intergenic
ATCAAGTTATGAGTGCTACT+AGG 0.451482 5:+6440972 MsG0580024569.01.T01:CDS
TGCGCCTGTGGCACTTTGTA+AGG 0.455121 5:-6442018 None:intergenic
TTTGGAATCGGTTGTGGAGT+TGG 0.458433 5:+6440680 MsG0580024569.01.T01:CDS
ATGAGAGCTTACTGATTCGC+TGG 0.460415 5:-6442252 None:intergenic
TCAAGTTATGAGTGCTACTA+GGG 0.471040 5:+6440973 MsG0580024569.01.T01:CDS
TTGGTAAGTAACCCATTAGC+AGG 0.472572 5:-6444035 None:intergenic
TGTGGAGTTGGTTTCGGTCA+TGG 0.472934 5:+6441167 MsG0580024569.01.T01:CDS
ACAGGACTTGCTGTGAAACC+TGG 0.477065 5:+6441802 MsG0580024569.01.T01:intron
GTTGGTTTCGGTCATGGTGT+TGG 0.481887 5:+6441173 MsG0580024569.01.T01:CDS
ATTGAAGTGGGTGTTGGATG+TGG 0.485704 5:+6441149 MsG0580024569.01.T01:CDS
TGGAGGAAAATGAGAAGCTT+CGG 0.486885 5:+6443769 MsG0580024569.01.T01:CDS
CCTCCTTCTCCCTTCAACAG+TGG 0.488432 5:-6442224 None:intergenic
ACTTCAGCCGACTCTACATA+TGG 0.500649 5:+6442161 MsG0580024569.01.T01:CDS
TGTGGAGTTGGTATCGGTGT+TGG 0.502325 5:+6440692 MsG0580024569.01.T01:CDS
TTCGGTCATGGTGTTGGAGT+TGG 0.502955 5:+6441179 MsG0580024569.01.T01:CDS
CCCAGTTTACCGTTTAATCC+GGG 0.504429 5:+6441981 MsG0580024569.01.T01:CDS
TGAATTTGATTCAACACCCC+AGG 0.508485 5:-6441820 None:intergenic
AAGAAAACAAAGAAGAAAGT+AGG 0.525920 5:+6443896 MsG0580024569.01.T01:CDS
TCCAGAACTGACTGCGCCTG+TGG 0.525943 5:-6442030 None:intergenic
CACTCAAAACAATCAGTACA+TGG 0.527145 5:-6443870 None:intergenic
CTGCAAAATCCACTGTTGAA+GGG 0.528070 5:+6442215 MsG0580024569.01.T01:CDS
AAGAATATTGAAGTGGGTGT+TGG 0.528611 5:+6441143 MsG0580024569.01.T01:CDS
ATCGGTTGTGGAGTTGGTAT+CGG 0.538819 5:+6440686 MsG0580024569.01.T01:CDS
GTGGCACTTTGTAAGGATGC+TGG 0.546253 5:-6442011 None:intergenic
GAAGAGAATAAGGAAGGGAA+AGG 0.553142 5:-6440742 None:intergenic
CCCGGATTAAACGGTAAACT+GGG 0.556288 5:-6441981 None:intergenic
GCAAATGATTGAAGAACTTG+TGG 0.559081 5:+6443749 MsG0580024569.01.T01:CDS
AAGGATGCTGGCAATGCACC+CGG 0.560291 5:-6441999 None:intergenic
GCATCCTTACAAAGTGCCAC+AGG 0.560303 5:+6442014 MsG0580024569.01.T01:CDS
CAGGACTTGCTGTGAAACCT+GGG 0.561209 5:+6441803 MsG0580024569.01.T01:intron
AGTTATCTCAAGGTCTAGTA+GGG 0.564091 5:+6442087 MsG0580024569.01.T01:CDS
AAATTGGAAGAGAATAAGGA+AGG 0.564608 5:-6440748 None:intergenic
TGGTAAGTAACCCATTAGCA+GGG 0.583261 5:-6444034 None:intergenic
CTAGCTTCAAGTTTGCTGGA+TGG 0.583563 5:-6443819 None:intergenic
TGAGAGCTTACTGATTCGCT+GGG 0.586043 5:-6442251 None:intergenic
AATCCACTGTTGAAGGGAGA+AGG 0.589188 5:+6442221 MsG0580024569.01.T01:CDS
TCAGCTGATCAGTTATCTCA+AGG 0.590242 5:+6442077 MsG0580024569.01.T01:CDS
ATATGGCAGTCGAACTGAGA+AGG 0.597072 5:+6442178 MsG0580024569.01.T01:CDS
TGGAGCTAAGAATATTGAAG+TGG 0.597204 5:+6441136 MsG0580024569.01.T01:CDS
CCACTGTTGAAGGGAGAAGG+AGG 0.603974 5:+6442224 MsG0580024569.01.T01:CDS
GGAGCTAAGAATATTGAAGT+GGG 0.605534 5:+6441137 MsG0580024569.01.T01:CDS
AATGATTGAAGAACTTGTGG+AGG 0.616671 5:+6443752 MsG0580024569.01.T01:CDS
AATTGGAAGAGAATAAGGAA+GGG 0.619947 5:-6440747 None:intergenic
CTGTTGAAGGGAGAAGGAGG+AGG 0.623525 5:+6442227 MsG0580024569.01.T01:CDS
TCGACTGCCATATGTAGAGT+CGG 0.624499 5:-6442168 None:intergenic
GGGTCTCAACCAATGAACAT+TGG 0.632984 5:+6442107 MsG0580024569.01.T01:CDS
AAAAGGTAATAAGAGATACA+TGG 0.637767 5:-6440840 None:intergenic
GCTTCGGCAGATACTAGTGA+AGG 0.640377 5:+6443785 MsG0580024569.01.T01:CDS
CTCATAACTTGATTCAACAT+CGG 0.655826 5:-6440962 None:intergenic
TTGCACGTTATCGCTTAAAG+GGG 0.660290 5:+6443955 MsG0580024569.01.T01:three_prime_UTR
AGGGAGATCTCACGGTTTAG+GGG 0.678296 5:-6443980 None:intergenic
GGTAAGTAACCCATTAGCAG+GGG 0.690059 5:-6444033 None:intergenic
AGGACTTGCTGTGAAACCTG+GGG 0.707838 5:+6441804 MsG0580024569.01.T01:intron
CAAGTTATGAGTGCTACTAG+GGG 0.719794 5:+6440974 MsG0580024569.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAGTGAAAA+AGG - Chr5:6440860-6440879 None:intergenic 10.0%
!! AACTAAATATGTATATATAT+TGG - Chr5:6443440-6443459 None:intergenic 10.0%
!!! AATTTTACAAAATACTATTT+TGG - Chr5:6442677-6442696 None:intergenic 10.0%
!!! TATTGTTATTTTTTTCTAAA+CGG + Chr5:6442840-6442859 MsG0580024569.01.T01:intron 10.0%
!!! CAAATTTTTTTAGATCATTT+AGG + Chr5:6441350-6441369 MsG0580024569.01.T01:intron 15.0%
!!! TGTTTATTTATTTTTTCCTA+TGG + Chr5:6443706-6443725 MsG0580024569.01.T01:intron 15.0%
!!! TTGTTTCTTTATATACTTTT+TGG + Chr5:6443285-6443304 MsG0580024569.01.T01:intron 15.0%
!!! TTTTCTTTTATTATTATGAC+AGG + Chr5:6441784-6441803 MsG0580024569.01.T01:intron 15.0%
!!! TTTTGAATTATTGATCATTT+AGG + Chr5:6441297-6441316 MsG0580024569.01.T01:intron 15.0%
!! TGTAACTTTAAGTGTATTTA+GGG + Chr5:6441271-6441290 MsG0580024569.01.T01:intron 20.0%
!! TTGTAACTTTAAGTGTATTT+AGG + Chr5:6441270-6441289 MsG0580024569.01.T01:intron 20.0%
!! TTTCAAATATCACATTTGTT+TGG + Chr5:6443046-6443065 MsG0580024569.01.T01:intron 20.0%
!!! AATCCATTTACTTTGAAATT+TGG + Chr5:6440641-6440660 MsG0580024569.01.T01:CDS 20.0%
!!! ATCTATTCATGAGTTTTTTT+TGG - Chr5:6442701-6442720 None:intergenic 20.0%
!!! CATAATATTGAAAATTTTCC+AGG + Chr5:6441382-6441401 MsG0580024569.01.T01:intron 20.0%
!!! TCTATTCATGAGTTTTTTTT+GGG - Chr5:6442700-6442719 None:intergenic 20.0%
!!! TTATTTTTTCCTATGGTTAT+AGG + Chr5:6443713-6443732 MsG0580024569.01.T01:intron 20.0%
! AAAAGGTAATAAGAGATACA+TGG - Chr5:6440843-6440862 None:intergenic 25.0%
! AAACTCATGAATAGATATGT+TGG + Chr5:6442705-6442724 MsG0580024569.01.T01:intron 25.0%
! AAAGAAAATATGGAAAGGAT+GGG - Chr5:6441674-6441693 None:intergenic 25.0%
! AAATTTGGACAAGTATTTAC+TGG + Chr5:6440656-6440675 MsG0580024569.01.T01:CDS 25.0%
! AACAAGACCCAAAAAATTAA+GGG - Chr5:6444002-6444021 None:intergenic 25.0%
! AACTCATGAATAGATATGTT+GGG + Chr5:6442706-6442725 MsG0580024569.01.T01:intron 25.0%
! AAGAAAACAAAGAAGAAAGT+AGG + Chr5:6443896-6443915 MsG0580024569.01.T01:CDS 25.0%
! AATCCATAGTAATGTGAAAT+TGG - Chr5:6440767-6440786 None:intergenic 25.0%
! AGAGTAGTACCTAAATTTAA+AGG - Chr5:6440722-6440741 None:intergenic 25.0%
! ATCTATGATCTATAATAGAC+AGG - Chr5:6441445-6441464 None:intergenic 25.0%
! ATGAAGTGGTAAAGAAAATA+TGG - Chr5:6441684-6441703 None:intergenic 25.0%
! CTCAAGAAAATTTAAGTACA+AGG + Chr5:6443092-6443111 MsG0580024569.01.T01:intron 25.0%
! GAGTAGTACCTAAATTTAAA+GGG - Chr5:6440721-6440740 None:intergenic 25.0%
! TAAAAAATCCTCATTCCAAA+TGG - Chr5:6442491-6442510 None:intergenic 25.0%
! TAAAGAAAATATGGAAAGGA+TGG - Chr5:6441675-6441694 None:intergenic 25.0%
! TGAATTATTGATCATTTAGG+AGG + Chr5:6441300-6441319 MsG0580024569.01.T01:intron 25.0%
! TGTCCAAATTTCAAAGTAAA+TGG - Chr5:6440647-6440666 None:intergenic 25.0%
! TTAAACATGAGATACACAAA+AGG - Chr5:6441906-6441925 None:intergenic 25.0%
! TTTCACATTACTATGGATTT+CGG + Chr5:6440768-6440787 MsG0580024569.01.T01:CDS 25.0%
!! AATATTGAAAATTTTCCAGG+AGG + Chr5:6441385-6441404 MsG0580024569.01.T01:intron 25.0%
!! ATTTTCTTTACCACTTCATA+TGG + Chr5:6441685-6441704 MsG0580024569.01.T01:intron 25.0%
!! TGATATTTAAGATACATTGC+AGG + Chr5:6443535-6443554 MsG0580024569.01.T01:intron 25.0%
!! TTAAATTTTCTTGAGACAGA+GGG - Chr5:6443087-6443106 None:intergenic 25.0%
!! TTTTCTTTACCACTTCATAT+GGG + Chr5:6441686-6441705 MsG0580024569.01.T01:intron 25.0%
!!! ACTTGTTTTTCATATAGTTG+AGG + Chr5:6441108-6441127 MsG0580024569.01.T01:intron 25.0%
!!! ATTTGGAATGAGGATTTTTT+AGG + Chr5:6442490-6442509 MsG0580024569.01.T01:intron 25.0%
!!! GTTTTTTAATATACAGTTCG+AGG - Chr5:6441483-6441502 None:intergenic 25.0%
!!! TCTTATTCTGAATTTGTTGT+AGG + Chr5:6440932-6440951 MsG0580024569.01.T01:CDS 25.0%
!!! TTTGGAATGAGGATTTTTTA+GGG + Chr5:6442491-6442510 MsG0580024569.01.T01:intron 25.0%
AAAAATTAAGGGAGATCTCA+CGG - Chr5:6443991-6444010 None:intergenic 30.0%
AAATTGGAAGAGAATAAGGA+AGG - Chr5:6440751-6440770 None:intergenic 30.0%
AATTGGAAGAGAATAAGGAA+GGG - Chr5:6440750-6440769 None:intergenic 30.0%
ACTCATGAATAGATATGTTG+GGG + Chr5:6442707-6442726 MsG0580024569.01.T01:intron 30.0%
AGAGAACAAAATACTTCAGA+TGG + Chr5:6443574-6443593 MsG0580024569.01.T01:intron 30.0%
CACTTTATGCTTCACATAAA+TGG + Chr5:6442392-6442411 MsG0580024569.01.T01:intron 30.0%
CTCATAACTTGATTCAACAT+CGG - Chr5:6440965-6440984 None:intergenic 30.0%
CTTCCAATTTCACATTACTA+TGG + Chr5:6440761-6440780 MsG0580024569.01.T01:CDS 30.0%
GAACAAGACCCAAAAAATTA+AGG - Chr5:6444003-6444022 None:intergenic 30.0%
GTGGTAAAGAAAATATGGAA+AGG - Chr5:6441679-6441698 None:intergenic 30.0%
GTTTCAAAACCTATAACCAT+AGG - Chr5:6443725-6443744 None:intergenic 30.0%
TGAAGAATGTTCACAAAACA+TGG - Chr5:6441749-6441768 None:intergenic 30.0%
TGTGAAATTGGAAGAGAATA+AGG - Chr5:6440755-6440774 None:intergenic 30.0%
TTCATATAGTTGAGGAAGAT+TGG + Chr5:6441116-6441135 MsG0580024569.01.T01:intron 30.0%
TTGTTGAGACTGGAAAAATA+TGG + Chr5:6443144-6443163 MsG0580024569.01.T01:intron 30.0%
! ACAAAGATGATGATGAAGTT+TGG + Chr5:6441951-6441970 MsG0580024569.01.T01:CDS 30.0%
! CTTAAATTTTCTTGAGACAG+AGG - Chr5:6443088-6443107 None:intergenic 30.0%
! GCAAGAATCAAATTTTTCCT+AGG - Chr5:6442628-6442647 None:intergenic 30.0%
! TAAATTTTCTTGAGACAGAG+GGG - Chr5:6443086-6443105 None:intergenic 30.0%
! TTTGGAAAACCAAACACTTT+TGG - Chr5:6442659-6442678 None:intergenic 30.0%
!! TACTTTTTGGTGATTAACTG+TGG + Chr5:6443298-6443317 MsG0580024569.01.T01:intron 30.0%
!!! AGATACATGGTTTTTGAGTA+GGG - Chr5:6440830-6440849 None:intergenic 30.0%
!!! AGGATTTTTTAGGGCTATAA+GGG + Chr5:6442500-6442519 MsG0580024569.01.T01:intron 30.0%
!!! CATACTTTTCCAAAAGTGTT+TGG + Chr5:6442647-6442666 MsG0580024569.01.T01:intron 30.0%
!!! GAGATCTCCCTTAATTTTTT+GGG + Chr5:6443992-6444011 MsG0580024569.01.T01:three_prime_UTR 30.0%
!!! GTATTTACTGGTTTTGGAAT+CGG + Chr5:6440668-6440687 MsG0580024569.01.T01:CDS 30.0%
!!! TGAGATCTCCCTTAATTTTT+TGG + Chr5:6443991-6444010 MsG0580024569.01.T01:three_prime_UTR 30.0%
!!! TTGTTGATTTTTTTTTGCGC+TGG + Chr5:6443660-6443679 MsG0580024569.01.T01:intron 30.0%
!!! TTTTGGCGATAATGGAATTT+GGG + Chr5:6442730-6442749 MsG0580024569.01.T01:intron 30.0%
!!! TTTTTGAGTAGGGGAATTTT+GGG - Chr5:6440820-6440839 None:intergenic 30.0%
!!! TTTTTTCTAAACGGTATCCT+GGG + Chr5:6442849-6442868 MsG0580024569.01.T01:intron 30.0%
!!! TTTTTTTCTAAACGGTATCC+TGG + Chr5:6442848-6442867 MsG0580024569.01.T01:intron 30.0%
AAAGCCAAACCAATGTTCAT+TGG - Chr5:6442119-6442138 None:intergenic 35.0%
AAATATGGAAAGGATGGGAT+AGG - Chr5:6441669-6441688 None:intergenic 35.0%
AAATATGGTTATCTGCTGAG+AGG + Chr5:6443159-6443178 MsG0580024569.01.T01:intron 35.0%
AAGAATATTGAAGTGGGTGT+TGG + Chr5:6441143-6441162 MsG0580024569.01.T01:CDS 35.0%
AATGATTGAAGAACTTGTGG+AGG + Chr5:6443752-6443771 MsG0580024569.01.T01:CDS 35.0%
AGTTATCTCAAGGTCTAGTA+GGG + Chr5:6442087-6442106 MsG0580024569.01.T01:CDS 35.0%
CAAGTTCTTCAATCATTTGC+TGG - Chr5:6443749-6443768 None:intergenic 35.0%
CACTCAAAACAATCAGTACA+TGG - Chr5:6443873-6443892 None:intergenic 35.0%
CAGAAAAAACTCACGAAAGA+GGG - Chr5:6443489-6443508 None:intergenic 35.0%
CATCTTTGTCATTGTCATCT+AGG - Chr5:6441940-6441959 None:intergenic 35.0%
GCAAATGATTGAAGAACTTG+TGG + Chr5:6443749-6443768 MsG0580024569.01.T01:CDS 35.0%
GCTGTTTAAATTGTTGAGAC+TGG + Chr5:6443134-6443153 MsG0580024569.01.T01:intron 35.0%
GCTTCAATGATCAGAAGAAA+AGG - Chr5:6442314-6442333 None:intergenic 35.0%
GGAGCTAAGAATATTGAAGT+GGG + Chr5:6441137-6441156 MsG0580024569.01.T01:CDS 35.0%
GGTGATTAACTGTGGTATTT+GGG + Chr5:6443306-6443325 MsG0580024569.01.T01:intron 35.0%
GTTGGAAGCCCTTTAAATTT+AGG + Chr5:6440710-6440729 MsG0580024569.01.T01:CDS 35.0%
TCAGAAAAAACTCACGAAAG+AGG - Chr5:6443490-6443509 None:intergenic 35.0%
TCCTCATTCCAAATGGAAAA+TGG - Chr5:6442484-6442503 None:intergenic 35.0%
TGAAGCAGAAGATGTTGTTA+GGG + Chr5:6441556-6441575 MsG0580024569.01.T01:intron 35.0%
TGGAGCTAAGAATATTGAAG+TGG + Chr5:6441136-6441155 MsG0580024569.01.T01:CDS 35.0%
TGGTGATTAACTGTGGTATT+TGG + Chr5:6443305-6443324 MsG0580024569.01.T01:intron 35.0%
TTGAAGCAGAAGATGTTGTT+AGG + Chr5:6441555-6441574 MsG0580024569.01.T01:intron 35.0%
! AAACTTGAAGCTAGTTCTTC+AGG + Chr5:6443828-6443847 MsG0580024569.01.T01:CDS 35.0%
! AATGTTCGCGTATTGTTTTC+AGG - Chr5:6442985-6443004 None:intergenic 35.0%
! ATCAAGTTATGAGTGCTACT+AGG + Chr5:6440972-6440991 MsG0580024569.01.T01:CDS 35.0%
! ATTTAAGATACATTGCAGGC+TGG + Chr5:6443539-6443558 MsG0580024569.01.T01:intron 35.0%
! CTGTGTGACAATTTTAAACG+AGG + Chr5:6443250-6443269 MsG0580024569.01.T01:intron 35.0%
! GAATAGATATGTTGGGGTTT+TGG + Chr5:6442713-6442732 MsG0580024569.01.T01:intron 35.0%
! TCAACCAATGAACATTGGTT+TGG + Chr5:6442112-6442131 MsG0580024569.01.T01:CDS 35.0%
! TCAAGTTATGAGTGCTACTA+GGG + Chr5:6440973-6440992 MsG0580024569.01.T01:CDS 35.0%
! TTGAAAATTTTCCAGGAGGT+AGG + Chr5:6441389-6441408 MsG0580024569.01.T01:intron 35.0%
!! ACCATTTTCCATTTGGAATG+AGG + Chr5:6442480-6442499 MsG0580024569.01.T01:intron 35.0%
!! TTTTGAGTAGGGGAATTTTG+GGG - Chr5:6440819-6440838 None:intergenic 35.0%
!!! ATTTTTTAGGGCTATAAGGG+AGG + Chr5:6442503-6442522 MsG0580024569.01.T01:intron 35.0%
!!! GAGATACATGGTTTTTGAGT+AGG - Chr5:6440831-6440850 None:intergenic 35.0%
!!! GAGGATTTTTTAGGGCTATA+AGG + Chr5:6442499-6442518 MsG0580024569.01.T01:intron 35.0%
!!! GATACATGGTTTTTGAGTAG+GGG - Chr5:6440829-6440848 None:intergenic 35.0%
!!! GGACAAGTATTTACTGGTTT+TGG + Chr5:6440662-6440681 MsG0580024569.01.T01:CDS 35.0%
!!! GTTTTGGCGATAATGGAATT+TGG + Chr5:6442729-6442748 MsG0580024569.01.T01:intron 35.0%
!!! GTTTTTGAGTAGGGGAATTT+TGG - Chr5:6440821-6440840 None:intergenic 35.0%
AAAAACTCACGAAAGAGGGA+AGG - Chr5:6443485-6443504 None:intergenic 40.0%
CAGTTATCTCAAGGTCTAGT+AGG + Chr5:6442086-6442105 MsG0580024569.01.T01:CDS 40.0%
CATAATCCACCCATATGAAG+TGG - Chr5:6441698-6441717 None:intergenic 40.0%
CTGCAAAATCCACTGTTGAA+GGG + Chr5:6442215-6442234 MsG0580024569.01.T01:CDS 40.0%
CTTGCACGTTATCGCTTAAA+GGG + Chr5:6443954-6443973 MsG0580024569.01.T01:three_prime_UTR 40.0%
GAAGAGAATAAGGAAGGGAA+AGG - Chr5:6440745-6440764 None:intergenic 40.0%
GAGAAGGTAGGCTAAAATTC+AGG + Chr5:6442554-6442573 MsG0580024569.01.T01:intron 40.0%
GTAGAAAGGATGGATCATGT+TGG + Chr5:6442809-6442828 MsG0580024569.01.T01:intron 40.0%
TCAGCTGATCAGTTATCTCA+AGG + Chr5:6442077-6442096 MsG0580024569.01.T01:CDS 40.0%
TCCCAGTTTACCGTTTAATC+CGG + Chr5:6441980-6441999 MsG0580024569.01.T01:CDS 40.0%
TCTGCAAAATCCACTGTTGA+AGG + Chr5:6442214-6442233 MsG0580024569.01.T01:CDS 40.0%
TCTGCAGTATCCAGAGATTT+AGG - Chr5:6441600-6441619 None:intergenic 40.0%
TCTTTACCACTTCATATGGG+TGG + Chr5:6441689-6441708 MsG0580024569.01.T01:intron 40.0%
TGAATTTGATTCAACACCCC+AGG - Chr5:6441823-6441842 None:intergenic 40.0%
TGGAGGAAAATGAGAAGCTT+CGG + Chr5:6443769-6443788 MsG0580024569.01.T01:CDS 40.0%
TGGTAAGTAACCCATTAGCA+GGG - Chr5:6444037-6444056 None:intergenic 40.0%
TTCCAAGTCTATCAGTGTTG+AGG - Chr5:6443616-6443635 None:intergenic 40.0%
TTGCACGTTATCGCTTAAAG+GGG + Chr5:6443955-6443974 MsG0580024569.01.T01:three_prime_UTR 40.0%
TTGGTAAGTAACCCATTAGC+AGG - Chr5:6444038-6444057 None:intergenic 40.0%
! AGAACTAGCTTCAAGTTTGC+TGG - Chr5:6443826-6443845 None:intergenic 40.0%
! CAAGTTATGAGTGCTACTAG+GGG + Chr5:6440974-6440993 MsG0580024569.01.T01:CDS 40.0%
! TGCTGAGACCATTTTCCATT+TGG + Chr5:6442473-6442492 MsG0580024569.01.T01:intron 40.0%
!! ATGCATTTTCTGGTGTTAGC+AGG + Chr5:6441005-6441024 MsG0580024569.01.T01:CDS 40.0%
!!! CTTGGTTTTTGGCCAAAACA+GGG + Chr5:6442903-6442922 MsG0580024569.01.T01:intron 40.0%
!!! TTGGTTTTTGGCCAAAACAG+GGG + Chr5:6442904-6442923 MsG0580024569.01.T01:intron 40.0%
AAAGGATGGATCATGTTGGC+TGG + Chr5:6442813-6442832 MsG0580024569.01.T01:intron 45.0%
AAGGGAGATCTCACGGTTTA+GGG - Chr5:6443984-6444003 None:intergenic 45.0%
AATCCACTGTTGAAGGGAGA+AGG + Chr5:6442221-6442240 MsG0580024569.01.T01:CDS 45.0%
ACCCGGATTAAACGGTAAAC+TGG - Chr5:6441985-6442004 None:intergenic 45.0%
ATATGGCAGTCGAACTGAGA+AGG + Chr5:6442178-6442197 MsG0580024569.01.T01:CDS 45.0%
CCCAGTTTACCGTTTAATCC+GGG + Chr5:6441981-6442000 MsG0580024569.01.T01:CDS 45.0%
CCCGGATTAAACGGTAAACT+GGG - Chr5:6441984-6442003 None:intergenic 45.0%
GCTTGCACGTTATCGCTTAA+AGG + Chr5:6443953-6443972 MsG0580024569.01.T01:three_prime_UTR 45.0%
GGCCAAAAACCAAGCTCATT+GGG - Chr5:6442897-6442916 None:intergenic 45.0%
GGGTCTCAACCAATGAACAT+TGG + Chr5:6442107-6442126 MsG0580024569.01.T01:CDS 45.0%
GGTAAGTAACCCATTAGCAG+GGG - Chr5:6444036-6444055 None:intergenic 45.0%
GTCCTCAACACTGATAGACT+TGG + Chr5:6443611-6443630 MsG0580024569.01.T01:intron 45.0%
TAACAACAGACGATGCCTAC+AGG - Chr5:6443228-6443247 None:intergenic 45.0%
TAAGGGAGATCTCACGGTTT+AGG - Chr5:6443985-6444004 None:intergenic 45.0%
TACAAGTTGCCCCTGCTAAT+GGG + Chr5:6444024-6444043 MsG0580024569.01.T01:three_prime_UTR 45.0%
TAGTGTGGAGATGAGAAGGT+AGG + Chr5:6442542-6442561 MsG0580024569.01.T01:intron 45.0%
TCAAATGGCACAAAGCCCTT+TGG - Chr5:6442591-6442610 None:intergenic 45.0%
TCGACTGCCATATGTAGAGT+CGG - Chr5:6442171-6442190 None:intergenic 45.0%
TGGCCAAAAACCAAGCTCAT+TGG - Chr5:6442898-6442917 None:intergenic 45.0%
TTCCACAAAAACCTACCTCC+TGG - Chr5:6441403-6441422 None:intergenic 45.0%
! AAGGATGGATCATGTTGGCT+GGG + Chr5:6442814-6442833 MsG0580024569.01.T01:intron 45.0%
! ACTTCAGCCGACTCTACATA+TGG + Chr5:6442161-6442180 MsG0580024569.01.T01:CDS 45.0%
! GATGCAACATTCCCCTGTTT+TGG - Chr5:6442918-6442937 None:intergenic 45.0%
! GGTGCAACTGATGCATTTTC+TGG + Chr5:6440995-6441014 MsG0580024569.01.T01:CDS 45.0%
! GTTGGATGTGGAGTTGGTTT+CGG + Chr5:6441161-6441180 MsG0580024569.01.T01:CDS 45.0%
! TGGGGTTTTCTTTAACACCC+AGG - Chr5:6442869-6442888 None:intergenic 45.0%
! TTCCAGGAGGTAGGTTTTTG+TGG + Chr5:6441398-6441417 MsG0580024569.01.T01:intron 45.0%
! TTTGGAATCGGTTGTGGAGT+TGG + Chr5:6440680-6440699 MsG0580024569.01.T01:CDS 45.0%
!! AGGGGAATTTTGGGGAGATT+TGG - Chr5:6440811-6440830 None:intergenic 45.0%
!! ATCGGTTGTGGAGTTGGTAT+CGG + Chr5:6440686-6440705 MsG0580024569.01.T01:CDS 45.0%
!! ATGAGAGCTTACTGATTCGC+TGG - Chr5:6442255-6442274 None:intergenic 45.0%
!! ATTGAAGTGGGTGTTGGATG+TGG + Chr5:6441149-6441168 MsG0580024569.01.T01:CDS 45.0%
!! CTAGCTTCAAGTTTGCTGGA+TGG - Chr5:6443822-6443841 None:intergenic 45.0%
!! CTCCCAATGAGCTTGGTTTT+TGG + Chr5:6442892-6442911 MsG0580024569.01.T01:intron 45.0%
!! GGGGAATTTTGGGGAGATTT+GGG - Chr5:6440810-6440829 None:intergenic 45.0%
!! GTCGGCTGAAGTGTCTTTTA+TGG - Chr5:6442153-6442172 None:intergenic 45.0%
!! GTGCCATTTGACCTGTATCA+CGG + Chr5:6442600-6442619 MsG0580024569.01.T01:intron 45.0%
!! TACTGGTATGGTGGGTAGAA+AGG + Chr5:6442795-6442814 MsG0580024569.01.T01:intron 45.0%
!! TGAGAGCTTACTGATTCGCT+GGG - Chr5:6442254-6442273 None:intergenic 45.0%
!! TGTTGGGGTTTTGGCGATAA+TGG + Chr5:6442722-6442741 MsG0580024569.01.T01:intron 45.0%
!!! ACTGGTTTTGGAATCGGTTG+TGG + Chr5:6440674-6440693 MsG0580024569.01.T01:CDS 45.0%
!!! GCTTGGTTTTTGGCCAAAAC+AGG + Chr5:6442902-6442921 MsG0580024569.01.T01:intron 45.0%
AACTCACGAAAGAGGGAAGG+TGG - Chr5:6443482-6443501 None:intergenic 50.0%
AATGGCACAAAGCCCTTTGG+AGG - Chr5:6442588-6442607 None:intergenic 50.0%
ACCAAGCTCATTGGGAGAGA+TGG - Chr5:6442889-6442908 None:intergenic 50.0%
ACTCACGAAAGAGGGAAGGT+GGG - Chr5:6443481-6443500 None:intergenic 50.0%
AGGGAGATCTCACGGTTTAG+GGG - Chr5:6443983-6444002 None:intergenic 50.0%
CAAGCTCATTGGGAGAGATG+GGG - Chr5:6442887-6442906 None:intergenic 50.0%
CACCACAATAGCAGCCATTG+CGG - Chr5:6442771-6442790 None:intergenic 50.0%
CAGGCAAAGTAGCCTCCAAA+GGG + Chr5:6442573-6442592 MsG0580024569.01.T01:intron 50.0%
CATTAGCAGGGGCAACTTGT+AGG - Chr5:6444025-6444044 None:intergenic 50.0%
CCAAGCTCATTGGGAGAGAT+GGG - Chr5:6442888-6442907 None:intergenic 50.0%
CCAAGTTCCAACTCGTAGTG+TGG + Chr5:6442527-6442546 MsG0580024569.01.T01:intron 50.0%
CTACAAGTTGCCCCTGCTAA+TGG + Chr5:6444023-6444042 MsG0580024569.01.T01:three_prime_UTR 50.0%
CTCATCTCCACACTACGAGT+TGG - Chr5:6442537-6442556 None:intergenic 50.0%
CTCGTAGTGTGGAGATGAGA+AGG + Chr5:6442538-6442557 MsG0580024569.01.T01:intron 50.0%
GAGCCGTGATACAGGTCAAA+TGG - Chr5:6442606-6442625 None:intergenic 50.0%
GCTTCGGCAGATACTAGTGA+AGG + Chr5:6443785-6443804 MsG0580024569.01.T01:CDS 50.0%
GGCAATGCACCCGGATTAAA+CGG - Chr5:6441993-6442012 None:intergenic 50.0%
GTGGCACTTTGTAAGGATGC+TGG - Chr5:6442014-6442033 None:intergenic 50.0%
TCAGGCAAAGTAGCCTCCAA+AGG + Chr5:6442572-6442591 MsG0580024569.01.T01:intron 50.0%
TGCACATGTCCTCTTCCTGT+AGG + Chr5:6443210-6443229 MsG0580024569.01.T01:intron 50.0%
TTTCCTAGGAGCCGTGATAC+AGG - Chr5:6442614-6442633 None:intergenic 50.0%
! CCACACTACGAGTTGGAACT+TGG - Chr5:6442530-6442549 None:intergenic 50.0%
! GCATCCTTACAAAGTGCCAC+AGG + Chr5:6442014-6442033 MsG0580024569.01.T01:CDS 50.0%
! GTTGGTTTCGGTCATGGTGT+TGG + Chr5:6441173-6441192 MsG0580024569.01.T01:CDS 50.0%
! TGTGGAGTTGGTTTCGGTCA+TGG + Chr5:6441167-6441186 MsG0580024569.01.T01:CDS 50.0%
! TTCGGTCATGGTGTTGGAGT+TGG + Chr5:6441179-6441198 MsG0580024569.01.T01:CDS 50.0%
!! ACAGGACTTGCTGTGAAACC+TGG + Chr5:6441802-6441821 MsG0580024569.01.T01:intron 50.0%
!! AGGACTTGCTGTGAAACCTG+GGG + Chr5:6441804-6441823 MsG0580024569.01.T01:intron 50.0%
!! CAGGACTTGCTGTGAAACCT+GGG + Chr5:6441803-6441822 MsG0580024569.01.T01:intron 50.0%
!! GGTATGGTGGGTAGAAAGGA+TGG + Chr5:6442799-6442818 MsG0580024569.01.T01:intron 50.0%
!! TGCTATTGTGGTGGTGCTAC+TGG + Chr5:6442778-6442797 MsG0580024569.01.T01:intron 50.0%
!! TGTGGAGTTGGTATCGGTGT+TGG + Chr5:6440692-6440711 MsG0580024569.01.T01:CDS 50.0%
!! TTGTGGTGGTGCTACTGGTA+TGG + Chr5:6442783-6442802 MsG0580024569.01.T01:intron 50.0%
AAGGATGCTGGCAATGCACC+CGG - Chr5:6442002-6442021 None:intergenic 55.0%
ACAGCAATCGCAAGCCGCAA+TGG + Chr5:6442754-6442773 MsG0580024569.01.T01:intron 55.0%
AGCCGCAATGGCTGCTATTG+TGG + Chr5:6442766-6442785 MsG0580024569.01.T01:intron 55.0%
ATTTAGGCATGCCGCGGTTG+TGG - Chr5:6441584-6441603 None:intergenic 55.0%
CAGACGATGCCTACAGGAAG+AGG - Chr5:6443222-6443241 None:intergenic 55.0%
CCACTGTTGAAGGGAGAAGG+AGG + Chr5:6442224-6442243 MsG0580024569.01.T01:CDS 55.0%
CCAGAGATTTAGGCATGCCG+CGG - Chr5:6441590-6441609 None:intergenic 55.0%
CCCATCTCTCCCAATGAGCT+TGG + Chr5:6442885-6442904 MsG0580024569.01.T01:intron 55.0%
CCTCCTTCTCCCTTCAACAG+TGG - Chr5:6442227-6442246 None:intergenic 55.0%
CGCAATGGCTGCTATTGTGG+TGG + Chr5:6442769-6442788 MsG0580024569.01.T01:intron 55.0%
CTCACGAAAGAGGGAAGGTG+GGG - Chr5:6443480-6443499 None:intergenic 55.0%
CTGTTGAAGGGAGAAGGAGG+AGG + Chr5:6442227-6442246 MsG0580024569.01.T01:CDS 55.0%
TGACCTGTATCACGGCTCCT+AGG + Chr5:6442608-6442627 MsG0580024569.01.T01:intron 55.0%
TGCGCCTGTGGCACTTTGTA+AGG - Chr5:6442021-6442040 None:intergenic 55.0%
! TTGTTAGGGTGCCACAACCG+CGG + Chr5:6441570-6441589 MsG0580024569.01.T01:intron 55.0%
!! GGTGGTGCTACTGGTATGGT+GGG + Chr5:6442787-6442806 MsG0580024569.01.T01:intron 55.0%
!! GTGGGTGTTGGATGTGGAGT+TGG + Chr5:6441155-6441174 MsG0580024569.01.T01:CDS 55.0%
!! TGGTGGTGCTACTGGTATGG+TGG + Chr5:6442786-6442805 MsG0580024569.01.T01:intron 55.0%
CCGCGGCATGCCTAAATCTC+TGG + Chr5:6441587-6441606 MsG0580024569.01.T01:intron 60.0%
TCCAGAACTGACTGCGCCTG+TGG - Chr5:6442033-6442052 None:intergenic 60.0%
GCCACAGGCGCAGTCAGTTC+TGG + Chr5:6442029-6442048 MsG0580024569.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 6440602 6444058 6440602 ID=MsG0580024569.01;Name=MsG0580024569.01
Chr5 mRNA 6440602 6444058 6440602 ID=MsG0580024569.01.T01;Parent=MsG0580024569.01;Name=MsG0580024569.01.T01;_AED=0.46;_eAED=0.56;_QI=0|0.75|0.8|1|1|1|5|141|356
Chr5 exon 6440602 6441042 6440602 ID=MsG0580024569.01.T01:exon:1523;Parent=MsG0580024569.01.T01
Chr5 exon 6441125 6441200 6441125 ID=MsG0580024569.01.T01:exon:1524;Parent=MsG0580024569.01.T01
Chr5 exon 6441806 6441855 6441806 ID=MsG0580024569.01.T01:exon:1525;Parent=MsG0580024569.01.T01
Chr5 exon 6441942 6442262 6441942 ID=MsG0580024569.01.T01:exon:1526;Parent=MsG0580024569.01.T01
Chr5 exon 6443735 6444058 6443735 ID=MsG0580024569.01.T01:exon:1527;Parent=MsG0580024569.01.T01
Chr5 CDS 6440602 6441042 6440602 ID=MsG0580024569.01.T01:cds;Parent=MsG0580024569.01.T01
Chr5 CDS 6441125 6441200 6441125 ID=MsG0580024569.01.T01:cds;Parent=MsG0580024569.01.T01
Chr5 CDS 6441806 6441855 6441806 ID=MsG0580024569.01.T01:cds;Parent=MsG0580024569.01.T01
Chr5 CDS 6441942 6442262 6441942 ID=MsG0580024569.01.T01:cds;Parent=MsG0580024569.01.T01
Chr5 CDS 6443735 6443917 6443735 ID=MsG0580024569.01.T01:cds;Parent=MsG0580024569.01.T01
Chr5 three_prime_UTR 6443918 6444058 6443918 ID=MsG0580024569.01.T01:three_prime_utr;Parent=MsG0580024569.01.T01
Gene Sequence

>MsG0580024569.01.T01

ATGGAAAACAAAAATGAAGGAAATGAAATTCGATTTTCGAATCCATTTACTTTGAAATTTGGACAAGTATTTACTGGTTTTGGAATCGGTTGTGGAGTTGGTATCGGTGTTGGAAGCCCTTTAAATTTAGGTACTACTCTCCTTTCCCTTCCTTATTCTCTTCCAATTTCACATTACTATGGATTTCGGAAAAATCTTGTTCAAACCCAAATCTCCCCAAAATTCCCCTACTCAAAAACCATGTATCTCTTATTACCTTTTTCACTTTTTTTTTTTTTTTTAATACTAATCTTATTGAAATTATATTATGTTATATTAATCAAATTGTTATCTTATTCTGAATTTGTTGTAGGTGCAATACCGATGTTGAATCAAGTTATGAGTGCTACTAGGGGTGCAACTGATGCATTTTCTGGTGTTAGCAGGCATGTTAATACTTCTTTGAGGAAGATTGGAGCTAAGAATATTGAAGTGGGTGTTGGATGTGGAGTTGGTTTCGGTCATGGTGTTGGAGTTGGACTTGCTGTGAAACCTGGGGTGTTGAATCAAATTCAATCATGTCTCGTAATGACAATGACAAAGATGATGATGAAGTTTGGAATTACTCCCAGTTTACCGTTTAATCCGGGTGCATTGCCAGCATCCTTACAAAGTGCCACAGGCGCAGTCAGTTCTGGAAGCGTGACACAGTTAGCAACTAAATCAGCTGATCAGTTATCTCAAGGTCTAGTAGGGTCTCAACCAATGAACATTGGTTTGGCTTTTGATAAAACTGCCATAAAAGACACTTCAGCCGACTCTACATATGGCAGTCGAACTGAGAAGGTTCTTAACAATTTTCTGCAAAATCCACTGTTGAAGGGAGAAGGAGGAGGACCCAGCGAATCAGTTTTGAAACACCAGCAAATGATTGAAGAACTTGTGGAGGAAAATGAGAAGCTTCGGCAGATACTAGTGAAGGAGCTGAAAGTTCCATCCAGCAAACTTGAAGCTAGTTCTTCAGGTAGAATTAGAAATAAGTTGCCATGTACTGATTGTTTTGAGTGTCGAAGAAAACAAAGAAGAAAGTAG

Protein sequence

>MsG0580024569.01.T01

MENKNEGNEIRFSNPFTLKFGQVFTGFGIGCGVGIGVGSPLNLGTTLLSLPYSLPISHYYGFRKNLVQTQISPKFPYSKTMYLLLPFSLFFFFLILILLKLYYVILIKLLSYSEFVVGAIPMLNQVMSATRGATDAFSGVSRHVNTSLRKIGAKNIEVGVGCGVGFGHGVGVGLAVKPGVLNQIQSCLVMTMTKMMMKFGITPSLPFNPGALPASLQSATGAVSSGSVTQLATKSADQLSQGLVGSQPMNIGLAFDKTAIKDTSADSTYGSRTEKVLNNFLQNPLLKGEGGGPSESVLKHQQMIEELVEENEKLRQILVKELKVPSSKLEASSSGRIRNKLPCTDCFECRRKQRRK*