AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0430920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 57 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTTGGATGTGTAATATTA+AGG 0.194324 3_2:-82751557 Msa0430920:three_prime_UTR
CTGAAAAGAAGTTTCAATTT+AGG 0.231345 3_2:-82751802 Msa0430920:CDS
GAAGCACGAACCAGAGAAAT+TGG 0.232248 3_2:-82752537 Msa0430920:five_prime_UTR
CCATTGATTTACAATAAATA+AGG 0.239329 3_2:+82751521 None:intergenic
ATAAAGGATTATTATTTCTA+TGG 0.253131 3_2:+82752260 None:intergenic
GTTACTTTCACCTCTCTTAC+AGG 0.254782 3_2:-82752132 Msa0430920:five_prime_UTR
ATCCCTCCTCTTTGTTAAAC+TGG 0.287597 3_2:+82751695 None:intergenic
ATATAGAATTGAATGGTAAA+AGG 0.288166 3_2:-82752157 Msa0430920:five_prime_UTR
TAAAATTACTTGAAATAAAA+AGG 0.290916 3_2:-82752494 Msa0430920:five_prime_UTR
TAATAATCCTTTATTAGTTA+AGG 0.291567 3_2:-82752251 Msa0430920:five_prime_UTR
CTCACACCCTTAACTAATAA+AGG 0.304585 3_2:+82752244 None:intergenic
AATAATCCTTTATTAGTTAA+GGG 0.340843 3_2:-82752250 Msa0430920:five_prime_UTR
CCTTATTTATTGTAAATCAA+TGG 0.342117 3_2:-82751521 Msa0430920:three_prime_UTR
TATTTATACAAATATCAAAT+AGG 0.364147 3_2:+82752318 None:intergenic
TTTCACTTTCAATGTACTCT+TGG 0.377163 3_2:-82752636 Msa0430920:five_prime_UTR
AAGAAAAGATGAAAAGTGTA+TGG 0.395163 3_2:-82751660 Msa0430920:three_prime_UTR
GTACTGTACCTGATACAATA+TGG 0.402588 3_2:+82751828 None:intergenic
CTTATTTATTGTAAATCAAT+GGG 0.402734 3_2:-82751520 Msa0430920:three_prime_UTR
GTGAAAGATAAGAAAGATCT+TGG 0.408538 3_2:-82751745 Msa0430920:three_prime_UTR
TGTTTGGATTGTTTGCGATT+TGG 0.408605 3_2:-82752445 Msa0430920:five_prime_UTR
TGAGCCACTACATCATGTTA+TGG 0.412205 3_2:+82751631 None:intergenic
GAGGAGAACCATATTGTATC+AGG 0.416982 3_2:-82751836 Msa0430920:CDS
TCTTTCTTATCTTTCACCTT+GGG 0.419428 3_2:+82751751 None:intergenic
CATATCAACATAAACATTCA+TGG 0.435825 3_2:+82752025 None:intergenic
ACGACAAAACCCAATTTCTC+TGG 0.455514 3_2:+82752527 None:intergenic
CGTGGATTTGCGAACCGTAA+AGG 0.455597 3_2:-82752585 Msa0430920:five_prime_UTR
GACCCATCAACTGGAGGAAA+AGG 0.463787 3_2:+82752662 None:intergenic
ATCTTTCTTATCTTTCACCT+TGG 0.466513 3_2:+82751750 None:intergenic
GTTTAACAAAGAGGAGGGAT+TGG 0.488431 3_2:-82751692 Msa0430920:three_prime_UTR
AACACTGGAAAGTTGGCTAA+TGG 0.488900 3_2:-82752107 Msa0430920:five_prime_UTR
CAATATGGTTCTCCTCTTCA+CGG 0.490112 3_2:+82751843 None:intergenic
AGAGGTCATACAATCTTACT+TGG 0.494820 3_2:-82752223 Msa0430920:five_prime_UTR
GGGGCTGTAATCCATGGAAA+TGG 0.501769 3_2:-82752053 Msa0430920:five_prime_UTR
ACAGGACAACACTGGAAAGT+TGG 0.504393 3_2:-82752114 Msa0430920:five_prime_UTR
TTATTCTATATAGAATTGAA+TGG 0.509949 3_2:-82752164 Msa0430920:five_prime_UTR
AAGCACGAACCAGAGAAATT+GGG 0.522543 3_2:-82752536 Msa0430920:five_prime_UTR
TCATGGGGAGACCATTTCCA+TGG 0.527491 3_2:+82752042 None:intergenic
GAATATCTTGAGGAATATGT+TGG 0.532265 3_2:-82751868 Msa0430920:CDS
AGAAAAGATGAAAAGTGTAT+GGG 0.540681 3_2:-82751659 Msa0430920:three_prime_UTR
GTTGGAGGGGCTGTAATCCA+TGG 0.544476 3_2:-82752059 Msa0430920:five_prime_UTR
ATATCAACATAAACATTCAT+GGG 0.545871 3_2:+82752026 None:intergenic
TACCAGTTTAACAAAGAGGA+GGG 0.568079 3_2:-82751697 Msa0430920:three_prime_UTR
TTATTAGTTAAGGGTGTGAG+AGG 0.571930 3_2:-82752241 Msa0430920:five_prime_UTR
CTAGAGGAATACATATCTCG+TGG 0.595031 3_2:-82752603 Msa0430920:five_prime_UTR
CCAGTGTTGTCCTGTAAGAG+AGG 0.596104 3_2:+82752122 None:intergenic
TCTTGGATTTGTGTATCTAG+AGG 0.597785 3_2:-82752619 Msa0430920:five_prime_UTR
GTATTACCAGTTTAACAAAG+AGG 0.598288 3_2:-82751701 Msa0430920:three_prime_UTR
CCTCTCTTACAGGACAACAC+TGG 0.607683 3_2:-82752122 Msa0430920:five_prime_UTR
TCTTGGAATCATGAAAGTCA+AGG 0.609272 3_2:-82751728 Msa0430920:three_prime_UTR
TTACCAGTTTAACAAAGAGG+AGG 0.617647 3_2:-82751698 Msa0430920:three_prime_UTR
TCAAGTGCAGGAATATCTTG+AGG 0.627516 3_2:-82751878 Msa0430920:intron
AGGACCATAACATGATGTAG+TGG 0.637466 3_2:-82751635 Msa0430920:three_prime_UTR
AAGATGAAAAGTGTATGGGA+AGG 0.640402 3_2:-82751655 Msa0430920:three_prime_UTR
AATATGTTGGAACCGTGAAG+AGG 0.650450 3_2:-82751855 Msa0430920:CDS
GTCATGACTTGATATACCCA+AGG 0.651402 3_2:-82751767 Msa0430920:exon
TATCAACATAAACATTCATG+GGG 0.688765 3_2:+82752027 None:intergenic
TATTTGGTAGTATACAACTG+TGG 0.690004 3_2:-82752815 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTACTTGAAATAAAA+AGG - chr3_2:82751735-82751754 Msa0430920:three_prime_UTR 10.0%
!! TATTTATACAAATATCAAAT+AGG + chr3_2:82751914-82751933 None:intergenic 10.0%
!! TAAAATTACTTGAAATAAAA+AGG - chr3_2:82751735-82751754 Msa0430920:three_prime_UTR 10.0%
!! TATTTATACAAATATCAAAT+AGG + chr3_2:82751914-82751933 None:intergenic 10.0%
!!! ATAAAGGATTATTATTTCTA+TGG + chr3_2:82751972-82751991 None:intergenic 15.0%
!! TAATAATCCTTTATTAGTTA+AGG - chr3_2:82751978-82751997 Msa0430920:intron 15.0%
!! AATAATCCTTTATTAGTTAA+GGG - chr3_2:82751979-82751998 Msa0430920:intron 15.0%
!! AGATTAAATTTAAGAAAAAC+TGG - chr3_2:82752036-82752055 Msa0430920:exon 15.0%
!! TTATTCTATATAGAATTGAA+TGG - chr3_2:82752065-82752084 Msa0430920:five_prime_UTR 15.0%
!! CTTATTTATTGTAAATCAAT+GGG - chr3_2:82752709-82752728 Msa0430920:five_prime_UTR 15.0%
!!! ATAAAGGATTATTATTTCTA+TGG + chr3_2:82751972-82751991 None:intergenic 15.0%
!! TAATAATCCTTTATTAGTTA+AGG - chr3_2:82751978-82751997 Msa0430920:intron 15.0%
!! AATAATCCTTTATTAGTTAA+GGG - chr3_2:82751979-82751998 Msa0430920:intron 15.0%
!! AGATTAAATTTAAGAAAAAC+TGG - chr3_2:82752036-82752055 Msa0430920:exon 15.0%
!! TTATTCTATATAGAATTGAA+TGG - chr3_2:82752065-82752084 Msa0430920:five_prime_UTR 15.0%
!! CTTATTTATTGTAAATCAAT+GGG - chr3_2:82752709-82752728 Msa0430920:five_prime_UTR 15.0%
!! ATATAGAATTGAATGGTAAA+AGG - chr3_2:82752072-82752091 Msa0430920:five_prime_UTR 20.0%
!! ATATCAACATAAACATTCAT+GGG + chr3_2:82752206-82752225 None:intergenic 20.0%
!! TCATGTTAACATAAAAGATT+AGG - chr3_2:82752269-82752288 Msa0430920:five_prime_UTR 20.0%
!!! AAATTTTATATATCAAGTGC+AGG - chr3_2:82752339-82752358 Msa0430920:five_prime_UTR 20.0%
!!! CCATTGATTTACAATAAATA+AGG + chr3_2:82752711-82752730 None:intergenic 20.0%
!!! CCTTATTTATTGTAAATCAA+TGG - chr3_2:82752708-82752727 Msa0430920:five_prime_UTR 20.0%
!! ATATAGAATTGAATGGTAAA+AGG - chr3_2:82752072-82752091 Msa0430920:five_prime_UTR 20.0%
!! ATATCAACATAAACATTCAT+GGG + chr3_2:82752206-82752225 None:intergenic 20.0%
!! TCATGTTAACATAAAAGATT+AGG - chr3_2:82752269-82752288 Msa0430920:five_prime_UTR 20.0%
!!! AAATTTTATATATCAAGTGC+AGG - chr3_2:82752339-82752358 Msa0430920:five_prime_UTR 20.0%
!!! CCATTGATTTACAATAAATA+AGG + chr3_2:82752711-82752730 None:intergenic 20.0%
!!! CCTTATTTATTGTAAATCAA+TGG - chr3_2:82752708-82752727 Msa0430920:five_prime_UTR 20.0%
!! TTTTTATGAGTGAGATTTCT+AGG - chr3_2:82751475-82751494 Msa0430920:three_prime_UTR 25.0%
!!! TCGTAGTTATTTTATTGAGA+AGG + chr3_2:82751674-82751693 None:intergenic 25.0%
!! GATTTTTGTTGAATGTTGTT+TGG - chr3_2:82751768-82751787 Msa0430920:exon 25.0%
!!! ACACAACTATTGATTTTTCT+AGG - chr3_2:82751847-82751866 Msa0430920:CDS 25.0%
! TATCAACATAAACATTCATG+GGG + chr3_2:82752205-82752224 None:intergenic 25.0%
! CATATCAACATAAACATTCA+TGG + chr3_2:82752207-82752226 None:intergenic 25.0%
! CTGAAAAGAAGTTTCAATTT+AGG - chr3_2:82752427-82752446 Msa0430920:five_prime_UTR 25.0%
!! AAGAAAAGATGAAAAGTGTA+TGG - chr3_2:82752569-82752588 Msa0430920:five_prime_UTR 25.0%
!! AGAAAAGATGAAAAGTGTAT+GGG - chr3_2:82752570-82752589 Msa0430920:five_prime_UTR 25.0%
!!! TTCTTTGTAATGTTTTGACT+TGG - chr3_2:82752656-82752675 Msa0430920:five_prime_UTR 25.0%
!! TTTTTATGAGTGAGATTTCT+AGG - chr3_2:82751475-82751494 Msa0430920:three_prime_UTR 25.0%
!!! TCGTAGTTATTTTATTGAGA+AGG + chr3_2:82751674-82751693 None:intergenic 25.0%
!! GATTTTTGTTGAATGTTGTT+TGG - chr3_2:82751768-82751787 Msa0430920:exon 25.0%
!!! ACACAACTATTGATTTTTCT+AGG - chr3_2:82751847-82751866 Msa0430920:CDS 25.0%
! TATCAACATAAACATTCATG+GGG + chr3_2:82752205-82752224 None:intergenic 25.0%
! CATATCAACATAAACATTCA+TGG + chr3_2:82752207-82752226 None:intergenic 25.0%
! CTGAAAAGAAGTTTCAATTT+AGG - chr3_2:82752427-82752446 Msa0430920:five_prime_UTR 25.0%
!! AAGAAAAGATGAAAAGTGTA+TGG - chr3_2:82752569-82752588 Msa0430920:five_prime_UTR 25.0%
!! AGAAAAGATGAAAAGTGTAT+GGG - chr3_2:82752570-82752589 Msa0430920:five_prime_UTR 25.0%
!!! TTCTTTGTAATGTTTTGACT+TGG - chr3_2:82752656-82752675 Msa0430920:five_prime_UTR 25.0%
TTTCACTTTCAATGTACTCT+TGG - chr3_2:82751593-82751612 Msa0430920:three_prime_UTR 30.0%
! ATTGAGAAGGTTTTCCTTTA+CGG + chr3_2:82751661-82751680 None:intergenic 30.0%
TGTGTTAATGTGCTATCTTT+AGG - chr3_2:82752301-82752320 Msa0430920:five_prime_UTR 30.0%
GAATATCTTGAGGAATATGT+TGG - chr3_2:82752361-82752380 Msa0430920:five_prime_UTR 30.0%
TCTTTCTTATCTTTCACCTT+GGG + chr3_2:82752481-82752500 None:intergenic 30.0%
ATCTTTCTTATCTTTCACCT+TGG + chr3_2:82752482-82752501 None:intergenic 30.0%
GTGAAAGATAAGAAAGATCT+TGG - chr3_2:82752484-82752503 Msa0430920:five_prime_UTR 30.0%
GTATTACCAGTTTAACAAAG+AGG - chr3_2:82752528-82752547 Msa0430920:five_prime_UTR 30.0%
GACTTGGATGTGTAATATTA+AGG - chr3_2:82752672-82752691 Msa0430920:five_prime_UTR 30.0%
TTTCACTTTCAATGTACTCT+TGG - chr3_2:82751593-82751612 Msa0430920:three_prime_UTR 30.0%
! ATTGAGAAGGTTTTCCTTTA+CGG + chr3_2:82751661-82751680 None:intergenic 30.0%
TGTGTTAATGTGCTATCTTT+AGG - chr3_2:82752301-82752320 Msa0430920:five_prime_UTR 30.0%
GAATATCTTGAGGAATATGT+TGG - chr3_2:82752361-82752380 Msa0430920:five_prime_UTR 30.0%
TCTTTCTTATCTTTCACCTT+GGG + chr3_2:82752481-82752500 None:intergenic 30.0%
ATCTTTCTTATCTTTCACCT+TGG + chr3_2:82752482-82752501 None:intergenic 30.0%
GTGAAAGATAAGAAAGATCT+TGG - chr3_2:82752484-82752503 Msa0430920:five_prime_UTR 30.0%
GTATTACCAGTTTAACAAAG+AGG - chr3_2:82752528-82752547 Msa0430920:five_prime_UTR 30.0%
GACTTGGATGTGTAATATTA+AGG - chr3_2:82752672-82752691 Msa0430920:five_prime_UTR 30.0%
TCTTGGATTTGTGTATCTAG+AGG - chr3_2:82751610-82751629 Msa0430920:three_prime_UTR 35.0%
TGTTTGGATTGTTTGCGATT+TGG - chr3_2:82751784-82751803 Msa0430920:CDS 35.0%
CTCACACCCTTAACTAATAA+AGG + chr3_2:82751988-82752007 None:intergenic 35.0%
! TTATTAGTTAAGGGTGTGAG+AGG - chr3_2:82751988-82752007 Msa0430920:intron 35.0%
AGAGGTCATACAATCTTACT+TGG - chr3_2:82752006-82752025 Msa0430920:CDS 35.0%
! TCAACTTTTGTGAGTGAAGT+TGG - chr3_2:82752152-82752171 Msa0430920:five_prime_UTR 35.0%
GTACTGTACCTGATACAATA+TGG + chr3_2:82752404-82752423 None:intergenic 35.0%
TCTTGGAATCATGAAAGTCA+AGG - chr3_2:82752501-82752520 Msa0430920:five_prime_UTR 35.0%
TTACCAGTTTAACAAAGAGG+AGG - chr3_2:82752531-82752550 Msa0430920:five_prime_UTR 35.0%
TACCAGTTTAACAAAGAGGA+GGG - chr3_2:82752532-82752551 Msa0430920:five_prime_UTR 35.0%
! AAGATGAAAAGTGTATGGGA+AGG - chr3_2:82752574-82752593 Msa0430920:five_prime_UTR 35.0%
TCTTGGATTTGTGTATCTAG+AGG - chr3_2:82751610-82751629 Msa0430920:three_prime_UTR 35.0%
TGTTTGGATTGTTTGCGATT+TGG - chr3_2:82751784-82751803 Msa0430920:CDS 35.0%
CTCACACCCTTAACTAATAA+AGG + chr3_2:82751988-82752007 None:intergenic 35.0%
! TTATTAGTTAAGGGTGTGAG+AGG - chr3_2:82751988-82752007 Msa0430920:intron 35.0%
AGAGGTCATACAATCTTACT+TGG - chr3_2:82752006-82752025 Msa0430920:CDS 35.0%
! TCAACTTTTGTGAGTGAAGT+TGG - chr3_2:82752152-82752171 Msa0430920:five_prime_UTR 35.0%
GTACTGTACCTGATACAATA+TGG + chr3_2:82752404-82752423 None:intergenic 35.0%
TCTTGGAATCATGAAAGTCA+AGG - chr3_2:82752501-82752520 Msa0430920:five_prime_UTR 35.0%
TTACCAGTTTAACAAAGAGG+AGG - chr3_2:82752531-82752550 Msa0430920:five_prime_UTR 35.0%
TACCAGTTTAACAAAGAGGA+GGG - chr3_2:82752532-82752551 Msa0430920:five_prime_UTR 35.0%
! AAGATGAAAAGTGTATGGGA+AGG - chr3_2:82752574-82752593 Msa0430920:five_prime_UTR 35.0%
!!! TTCGTTGCTTTTTTGCTCTG+TGG - chr3_2:82751519-82751538 Msa0430920:three_prime_UTR 40.0%
CTAGAGGAATACATATCTCG+TGG - chr3_2:82751626-82751645 Msa0430920:three_prime_UTR 40.0%
AAGCACGAACCAGAGAAATT+GGG - chr3_2:82751693-82751712 Msa0430920:three_prime_UTR 40.0%
ACGACAAAACCCAATTTCTC+TGG + chr3_2:82751705-82751724 None:intergenic 40.0%
!! GAGAAATTGGGTTTTGTCGT+CGG - chr3_2:82751705-82751724 Msa0430920:three_prime_UTR 40.0%
!! AGAAATTGGGTTTTGTCGTC+GGG - chr3_2:82751706-82751725 Msa0430920:three_prime_UTR 40.0%
! GTTACTTTCACCTCTCTTAC+AGG - chr3_2:82752097-82752116 Msa0430920:five_prime_UTR 40.0%
AACACTGGAAAGTTGGCTAA+TGG - chr3_2:82752122-82752141 Msa0430920:five_prime_UTR 40.0%
! ACTTTTGTGAGTGAAGTTGG+AGG - chr3_2:82752155-82752174 Msa0430920:five_prime_UTR 40.0%
! CTTTTGTGAGTGAAGTTGGA+GGG - chr3_2:82752156-82752175 Msa0430920:five_prime_UTR 40.0%
! TTTTGTGAGTGAAGTTGGAG+GGG - chr3_2:82752157-82752176 Msa0430920:five_prime_UTR 40.0%
TCAAGTGCAGGAATATCTTG+AGG - chr3_2:82752351-82752370 Msa0430920:five_prime_UTR 40.0%
AATATGTTGGAACCGTGAAG+AGG - chr3_2:82752374-82752393 Msa0430920:five_prime_UTR 40.0%
CAATATGGTTCTCCTCTTCA+CGG + chr3_2:82752389-82752408 None:intergenic 40.0%
GAGGAGAACCATATTGTATC+AGG - chr3_2:82752393-82752412 Msa0430920:five_prime_UTR 40.0%
GTCATGACTTGATATACCCA+AGG - chr3_2:82752462-82752481 Msa0430920:five_prime_UTR 40.0%
ATCCCTCCTCTTTGTTAAAC+TGG + chr3_2:82752537-82752556 None:intergenic 40.0%
GTTTAACAAAGAGGAGGGAT+TGG - chr3_2:82752537-82752556 Msa0430920:five_prime_UTR 40.0%
AGGACCATAACATGATGTAG+TGG - chr3_2:82752594-82752613 Msa0430920:five_prime_UTR 40.0%
TGAGCCACTACATCATGTTA+TGG + chr3_2:82752601-82752620 None:intergenic 40.0%
!!! TTCGTTGCTTTTTTGCTCTG+TGG - chr3_2:82751519-82751538 Msa0430920:three_prime_UTR 40.0%
CTAGAGGAATACATATCTCG+TGG - chr3_2:82751626-82751645 Msa0430920:three_prime_UTR 40.0%
AAGCACGAACCAGAGAAATT+GGG - chr3_2:82751693-82751712 Msa0430920:three_prime_UTR 40.0%
ACGACAAAACCCAATTTCTC+TGG + chr3_2:82751705-82751724 None:intergenic 40.0%
!! GAGAAATTGGGTTTTGTCGT+CGG - chr3_2:82751705-82751724 Msa0430920:three_prime_UTR 40.0%
!! AGAAATTGGGTTTTGTCGTC+GGG - chr3_2:82751706-82751725 Msa0430920:three_prime_UTR 40.0%
! GTTACTTTCACCTCTCTTAC+AGG - chr3_2:82752097-82752116 Msa0430920:five_prime_UTR 40.0%
AACACTGGAAAGTTGGCTAA+TGG - chr3_2:82752122-82752141 Msa0430920:five_prime_UTR 40.0%
! ACTTTTGTGAGTGAAGTTGG+AGG - chr3_2:82752155-82752174 Msa0430920:five_prime_UTR 40.0%
! CTTTTGTGAGTGAAGTTGGA+GGG - chr3_2:82752156-82752175 Msa0430920:five_prime_UTR 40.0%
! TTTTGTGAGTGAAGTTGGAG+GGG - chr3_2:82752157-82752176 Msa0430920:five_prime_UTR 40.0%
TCAAGTGCAGGAATATCTTG+AGG - chr3_2:82752351-82752370 Msa0430920:five_prime_UTR 40.0%
AATATGTTGGAACCGTGAAG+AGG - chr3_2:82752374-82752393 Msa0430920:five_prime_UTR 40.0%
CAATATGGTTCTCCTCTTCA+CGG + chr3_2:82752389-82752408 None:intergenic 40.0%
GAGGAGAACCATATTGTATC+AGG - chr3_2:82752393-82752412 Msa0430920:five_prime_UTR 40.0%
GTCATGACTTGATATACCCA+AGG - chr3_2:82752462-82752481 Msa0430920:five_prime_UTR 40.0%
ATCCCTCCTCTTTGTTAAAC+TGG + chr3_2:82752537-82752556 None:intergenic 40.0%
GTTTAACAAAGAGGAGGGAT+TGG - chr3_2:82752537-82752556 Msa0430920:five_prime_UTR 40.0%
AGGACCATAACATGATGTAG+TGG - chr3_2:82752594-82752613 Msa0430920:five_prime_UTR 40.0%
TGAGCCACTACATCATGTTA+TGG + chr3_2:82752601-82752620 None:intergenic 40.0%
!!! TTGCTTTTTTGCTCTGTGGC+AGG - chr3_2:82751523-82751542 Msa0430920:three_prime_UTR 45.0%
! TAGCCTTTTCCTCCAGTTGA+TGG - chr3_2:82751564-82751583 Msa0430920:three_prime_UTR 45.0%
! AGCCTTTTCCTCCAGTTGAT+GGG - chr3_2:82751565-82751584 Msa0430920:three_prime_UTR 45.0%
AAAAACGACCCATCAACTGG+AGG + chr3_2:82751576-82751595 None:intergenic 45.0%
GTGAAAAACGACCCATCAAC+TGG + chr3_2:82751579-82751598 None:intergenic 45.0%
GAAGCACGAACCAGAGAAAT+TGG - chr3_2:82751692-82751711 Msa0430920:three_prime_UTR 45.0%
ACAGGACAACACTGGAAAGT+TGG - chr3_2:82752115-82752134 Msa0430920:five_prime_UTR 45.0%
!!! TTGCTTTTTTGCTCTGTGGC+AGG - chr3_2:82751523-82751542 Msa0430920:three_prime_UTR 45.0%
! TAGCCTTTTCCTCCAGTTGA+TGG - chr3_2:82751564-82751583 Msa0430920:three_prime_UTR 45.0%
! AGCCTTTTCCTCCAGTTGAT+GGG - chr3_2:82751565-82751584 Msa0430920:three_prime_UTR 45.0%
AAAAACGACCCATCAACTGG+AGG + chr3_2:82751576-82751595 None:intergenic 45.0%
GTGAAAAACGACCCATCAAC+TGG + chr3_2:82751579-82751598 None:intergenic 45.0%
GAAGCACGAACCAGAGAAAT+TGG - chr3_2:82751692-82751711 Msa0430920:three_prime_UTR 45.0%
ACAGGACAACACTGGAAAGT+TGG - chr3_2:82752115-82752134 Msa0430920:five_prime_UTR 45.0%
GACCCATCAACTGGAGGAAA+AGG + chr3_2:82751570-82751589 None:intergenic 50.0%
CGTGGATTTGCGAACCGTAA+AGG - chr3_2:82751644-82751663 Msa0430920:three_prime_UTR 50.0%
CCAGTGTTGTCCTGTAAGAG+AGG + chr3_2:82752110-82752129 None:intergenic 50.0%
CCTCTCTTACAGGACAACAC+TGG - chr3_2:82752107-82752126 Msa0430920:five_prime_UTR 50.0%
GGGGCTGTAATCCATGGAAA+TGG - chr3_2:82752176-82752195 Msa0430920:five_prime_UTR 50.0%
TCATGGGGAGACCATTTCCA+TGG + chr3_2:82752190-82752209 None:intergenic 50.0%
GACCCATCAACTGGAGGAAA+AGG + chr3_2:82751570-82751589 None:intergenic 50.0%
CGTGGATTTGCGAACCGTAA+AGG - chr3_2:82751644-82751663 Msa0430920:three_prime_UTR 50.0%
CCAGTGTTGTCCTGTAAGAG+AGG + chr3_2:82752110-82752129 None:intergenic 50.0%
CCTCTCTTACAGGACAACAC+TGG - chr3_2:82752107-82752126 Msa0430920:five_prime_UTR 50.0%
GGGGCTGTAATCCATGGAAA+TGG - chr3_2:82752176-82752195 Msa0430920:five_prime_UTR 50.0%
TCATGGGGAGACCATTTCCA+TGG + chr3_2:82752190-82752209 None:intergenic 50.0%
GTTGGAGGGGCTGTAATCCA+TGG - chr3_2:82752170-82752189 Msa0430920:five_prime_UTR 55.0%
GTTGGAGGGGCTGTAATCCA+TGG - chr3_2:82752170-82752189 Msa0430920:five_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 82751420 82752831 82751420 ID=Msa0430920;Name=Msa0430920
chr3_2 mRNA 82751420 82752831 82751420 ID=Msa0430920-mRNA-1;Parent=Msa0430920;Name=Msa0430920-mRNA-1;_AED=0.17;_eAED=0.17;_QI=786|1|1|1|1|1|2|363|53
chr3_2 exon 82751420 82751890 82751420 ID=Msa0430920-mRNA-1:exon:23046;Parent=Msa0430920-mRNA-1
chr3_2 exon 82751992 82752831 82751992 ID=Msa0430920-mRNA-1:exon:23045;Parent=Msa0430920-mRNA-1
chr3_2 five_prime_UTR 82752046 82752831 82752046 ID=Msa0430920-mRNA-1:five_prime_utr;Parent=Msa0430920-mRNA-1
chr3_2 CDS 82751992 82752045 82751992 ID=Msa0430920-mRNA-1:cds;Parent=Msa0430920-mRNA-1
chr3_2 CDS 82751783 82751890 82751783 ID=Msa0430920-mRNA-1:cds;Parent=Msa0430920-mRNA-1
chr3_2 three_prime_UTR 82751420 82751782 82751420 ID=Msa0430920-mRNA-1:three_prime_utr;Parent=Msa0430920-mRNA-1
Gene Sequence

>Msa0430920

ATGAATGTTTATGTTGATATGTCTATTTCTTTTCTTGCAACTGCTCATGTTAGTGAATATCTTGAGGAATATGTTGGAACCGTGAAGAGGAGAACCATATTGTATCAGGTACAGTACAAACTGAAAAGAAGTTTCAATTTAGGTTGTTGTCAATTGTCATGA

Protein sequence

>Msa0430920

MNVYVDMSISFLATAHVSEYLEEYVGTVKRRTILYQVQYKLKRSFNLGCCQLS*