Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0002230 | Msa0430920 | 0.800878 | 1.172059e-48 | -8.615850e-47 |
Msa0007440 | Msa0430920 | 0.833542 | 5.024088e-56 | -8.615850e-47 |
Msa0031330 | Msa0430920 | 0.827989 | 1.153659e-54 | -8.615850e-47 |
Msa0078640 | Msa0430920 | 0.851601 | 7.980215e-61 | -8.615850e-47 |
Msa0084380 | Msa0430920 | 0.801509 | 8.708584e-49 | -8.615850e-47 |
Msa0087800 | Msa0430920 | 0.804186 | 2.437794e-49 | -8.615850e-47 |
Msa0090570 | Msa0430920 | 0.807051 | 6.106137e-50 | -8.615850e-47 |
Msa0103250 | Msa0430920 | 0.801364 | 9.324502e-49 | -8.615850e-47 |
Msa0104240 | Msa0430920 | 0.807017 | 6.207546e-50 | -8.615850e-47 |
Msa0107640 | Msa0430920 | 0.813850 | 2.077605e-51 | -8.615850e-47 |
Msa0131770 | Msa0430920 | 0.814777 | 1.296016e-51 | -8.615850e-47 |
Msa0138020 | Msa0430920 | 0.806330 | 8.667208e-50 | -8.615850e-47 |
Msa0140500 | Msa0430920 | -0.829100 | 6.216406e-55 | -8.615850e-47 |
Msa0160960 | Msa0430920 | 0.802859 | 4.593958e-49 | -8.615850e-47 |
Msa0178510 | Msa0430920 | 0.801203 | 1.006027e-48 | -8.615850e-47 |
Msa0180500 | Msa0430920 | 0.807577 | 4.723485e-50 | -8.615850e-47 |
Msa0204840 | Msa0430920 | 0.828697 | 7.785091e-55 | -8.615850e-47 |
Msa0206830 | Msa0430920 | 0.805666 | 1.195780e-49 | -8.615850e-47 |
Msa0217290 | Msa0430920 | 0.806951 | 6.409771e-50 | -8.615850e-47 |
Msa0218370 | Msa0430920 | 0.815659 | 8.256122e-52 | -8.615850e-47 |
Msa0229380 | Msa0430920 | 0.815495 | 8.980464e-52 | -8.615850e-47 |
Msa0367870 | Msa0430920 | 0.817058 | 4.015298e-52 | -8.615850e-47 |
Msa0381610 | Msa0430920 | -0.838354 | 3.022399e-57 | -8.615850e-47 |
Msa0394260 | Msa0430920 | 0.801452 | 8.945740e-49 | -8.615850e-47 |
Msa0398200 | Msa0430920 | 0.818855 | 1.576377e-52 | -8.615850e-47 |
Msa0405130 | Msa0430920 | 0.806250 | 9.010161e-50 | -8.615850e-47 |
Msa0413410 | Msa0430920 | 0.804366 | 2.235777e-49 | -8.615850e-47 |
Msa0414140 | Msa0430920 | 0.819183 | 1.327746e-52 | -8.615850e-47 |
Msa0417330 | Msa0430920 | 0.809657 | 1.698199e-50 | -8.615850e-47 |
Msa0425790 | Msa0430920 | 0.802341 | 5.875555e-49 | -8.615850e-47 |
Msa0430920 | Msa0432160 | 0.811442 | 6.988218e-51 | -8.615850e-47 |
Msa0430920 | Msa0450400 | -0.809867 | 1.529992e-50 | -8.615850e-47 |
Msa0430920 | Msa0455760 | 0.811223 | 7.793511e-51 | -8.615850e-47 |
Msa0430920 | Msa0460590 | 0.804490 | 2.106520e-49 | -8.615850e-47 |
Msa0430920 | Msa0466840 | -0.812558 | 3.991063e-51 | -8.615850e-47 |
Msa0430920 | Msa0468320 | 0.801393 | 9.196713e-49 | -8.615850e-47 |
Msa0430920 | Msa0476680 | 0.819286 | 1.257529e-52 | -8.615850e-47 |
Msa0430920 | Msa0518380 | 0.812699 | 3.716934e-51 | -8.615850e-47 |
Msa0430920 | Msa0521010 | 0.824110 | 9.638447e-54 | -8.615850e-47 |
Msa0430920 | Msa0521670 | 0.815608 | 8.472573e-52 | -8.615850e-47 |
Msa0430920 | Msa0532990 | 0.801398 | 9.174854e-49 | -8.615850e-47 |
Msa0430920 | Msa0545700 | 0.831975 | 1.230724e-55 | -8.615850e-47 |
Msa0430920 | Msa0555700 | 0.883968 | 2.862651e-71 | -8.615850e-47 |
Msa0430920 | Msa0613440 | 0.806953 | 6.404029e-50 | -8.615850e-47 |
Msa0430920 | Msa0615010 | 0.817665 | 2.930917e-52 | -8.615850e-47 |
Msa0430920 | Msa0638350 | 0.805913 | 1.061120e-49 | -8.615850e-47 |
Msa0430920 | Msa0664490 | 0.800788 | 1.223028e-48 | -8.615850e-47 |
Msa0430920 | Msa0687280 | 0.802419 | 5.661156e-49 | -8.615850e-47 |
Msa0430920 | Msa0698890 | 0.800394 | 1.470984e-48 | -8.615850e-47 |
Msa0430920 | Msa0707250 | 0.809501 | 1.834563e-50 | -8.615850e-47 |
Msa0430920 | Msa0711150 | 0.818388 | 2.012028e-52 | -8.615850e-47 |
Msa0430920 | Msa0731940 | 0.801655 | 8.125916e-49 | -8.615850e-47 |
Msa0430920 | Msa0748970 | 0.821737 | 3.443992e-53 | -8.615850e-47 |
Msa0430920 | Msa0751850 | 0.830223 | 3.314294e-55 | -8.615850e-47 |
Msa0430920 | Msa0763920 | 0.803723 | 3.042451e-49 | -8.615850e-47 |
Msa0430920 | Msa0768290 | 0.809105 | 2.230147e-50 | -8.615850e-47 |
Msa0430920 | Msa0768370 | 0.820400 | 6.998017e-53 | -8.615850e-47 |
Msa0430920 | Msa0773180 | 0.825014 | 5.905593e-54 | -8.615850e-47 |
Msa0430920 | Msa0814600 | 0.804398 | 2.202106e-49 | -8.615850e-47 |
Msa0430920 | Msa0817460 | 0.813796 | 2.134714e-51 | -8.615850e-47 |
Msa0430920 | Msa0820850 | 0.803593 | 3.238008e-49 | -8.615850e-47 |
Msa0430920 | Msa0826150 | 0.817023 | 4.087338e-52 | -8.615850e-47 |
Msa0430920 | Msa0830230 | 0.827864 | 1.236353e-54 | -8.615850e-47 |
Msa0430920 | Msa0831850 | 0.825025 | 5.870419e-54 | -8.615850e-47 |
Msa0430920 | Msa0832340 | 0.821841 | 3.257836e-53 | -8.615850e-47 |
Msa0430920 | Msa0844420 | 0.825224 | 5.265932e-54 | -8.615850e-47 |
Msa0430920 | Msa0844490 | 0.828902 | 6.944057e-55 | -8.615850e-47 |
Msa0430920 | Msa0849030 | 0.800295 | 1.541226e-48 | -8.615850e-47 |
Msa0430920 | Msa0853520 | 0.826055 | 3.345577e-54 | -8.615850e-47 |
Msa0430920 | Msa0861130 | 0.813278 | 2.775398e-51 | -8.615850e-47 |
Msa0430920 | Msa0888130 | 0.816279 | 6.001380e-52 | -8.615850e-47 |
Msa0430920 | Msa0890550 | 0.811407 | 7.111831e-51 | -8.615850e-47 |
Msa0430920 | Msa0894710 | 0.800291 | 1.543914e-48 | -8.615850e-47 |
Msa0430920 | Msa0897330 | 0.805765 | 1.139898e-49 | -8.615850e-47 |
Msa0430920 | Msa0901070 | 0.816975 | 4.191229e-52 | -8.615850e-47 |
Msa0430920 | Msa0914270 | 0.801846 | 7.426919e-49 | -8.615850e-47 |
Msa0430920 | Msa0921420 | 0.832348 | 9.952338e-56 | -8.615850e-47 |
Msa0430920 | Msa0925290 | 0.808865 | 2.510909e-50 | -8.615850e-47 |
Msa0430920 | Msa0927380 | 0.851752 | 7.232238e-61 | -8.615850e-47 |
Msa0430920 | Msa0936390 | 0.808138 | 3.588508e-50 | -8.615850e-47 |
Msa0430920 | Msa0943190 | 0.817185 | 3.759591e-52 | -8.615850e-47 |
Msa0430920 | Msa0948320 | 0.812083 | 5.067744e-51 | -8.615850e-47 |
Msa0430920 | Msa0960390 | 0.821720 | 3.474562e-53 | -8.615850e-47 |
Msa0430920 | Msa0964900 | 0.807756 | 4.326285e-50 | -8.615850e-47 |
Msa0430920 | Msa0967280 | 0.801265 | 9.768398e-49 | -8.615850e-47 |
Msa0430920 | Msa0969370 | 0.800225 | 1.592535e-48 | -8.615850e-47 |
Msa0430920 | Msa0969520 | 0.813461 | 2.530360e-51 | -8.615850e-47 |
Msa0430920 | Msa0969810 | 0.816204 | 6.236976e-52 | -8.615850e-47 |
Msa0430920 | Msa0974080 | 0.828556 | 8.420153e-55 | -8.615850e-47 |
Msa0430920 | Msa0976670 | 0.801232 | 9.921947e-49 | -8.615850e-47 |
Msa0430920 | Msa1000890 | 0.802221 | 6.217449e-49 | -8.615850e-47 |
Msa0430920 | Msa1026940 | 0.816928 | 4.295074e-52 | -8.615850e-47 |
Msa0430920 | Msa1034500 | 0.806163 | 9.401958e-50 | -8.615850e-47 |
Msa0430920 | Msa1036610 | 0.819806 | 9.569592e-53 | -8.615850e-47 |
Msa0430920 | Msa1063420 | 0.823549 | 1.304788e-53 | -8.615850e-47 |
Msa0430920 | Msa1064250 | 0.804366 | 2.235800e-49 | -8.615850e-47 |
Msa0430920 | Msa1075650 | 0.812027 | 5.212187e-51 | -8.615850e-47 |
Msa0430920 | Msa1089450 | 0.805710 | 1.170671e-49 | -8.615850e-47 |
Msa0430920 | Msa1100130 | -0.816108 | 6.555336e-52 | -8.615850e-47 |
Msa0430920 | Msa1104090 | 0.827105 | 1.879389e-54 | -8.615850e-47 |
Msa0430920 | Msa1104560 | 0.832569 | 8.770397e-56 | -8.615850e-47 |
Msa0430920 | Msa1109090 | 0.807415 | 5.111322e-50 | -8.615850e-47 |
Msa0430920 | Msa1111870 | 0.837919 | 3.912331e-57 | -8.615850e-47 |
Msa0430920 | Msa1121480 | 0.813847 | 2.080005e-51 | -8.615850e-47 |
Msa0430920 | Msa1121490 | 0.825152 | 5.477523e-54 | -8.615850e-47 |
Msa0430920 | Msa1137570 | 0.816383 | 5.689396e-52 | -8.615850e-47 |
Msa0430920 | Msa1142670 | 0.804828 | 1.790759e-49 | -8.615850e-47 |
Msa0430920 | Msa1162780 | 0.824631 | 7.269290e-54 | -8.615850e-47 |
Msa0430920 | Msa1177780 | 0.800669 | 1.293098e-48 | -8.615850e-47 |
Msa0430920 | Msa1185110 | 0.809641 | 1.711404e-50 | -8.615850e-47 |
Msa0430920 | Msa1194160 | 0.806606 | 7.582986e-50 | -8.615850e-47 |
Msa0430920 | Msa1210020 | 0.810804 | 9.608575e-51 | -8.615850e-47 |
Msa0430920 | Msa1231840 | 0.803361 | 3.616559e-49 | -8.615850e-47 |
Msa0430920 | Msa1232740 | 0.802464 | 5.540170e-49 | -8.615850e-47 |
Msa0430920 | Msa1246360 | 0.815746 | 7.895513e-52 | -8.615850e-47 |
Msa0430920 | Msa1275590 | 0.807556 | 4.772525e-50 | -8.615850e-47 |
Msa0430920 | Msa1286800 | 0.805230 | 1.476094e-49 | -8.615850e-47 |
Msa0430920 | Msa1287190 | 0.814435 | 1.542957e-51 | -8.615850e-47 |
Msa0430920 | Msa1298510 | 0.810384 | 1.184277e-50 | -8.615850e-47 |
Msa0430920 | Msa1305810 | 0.801280 | 9.702384e-49 | -8.615850e-47 |
Msa0430920 | Msa1308870 | 0.822521 | 2.266198e-53 | -8.615850e-47 |
Msa0430920 | Msa1312520 | 0.804619 | 1.980752e-49 | -8.615850e-47 |
Msa0430920 | Msa1355890 | 0.801491 | 8.780631e-49 | -8.615850e-47 |
Msa0430920 | Msa1366970 | 0.808003 | 3.833726e-50 | -8.615850e-47 |
Msa0430920 | Msa1390680 | 0.801361 | 9.335507e-49 | -8.615850e-47 |
Msa0430920 | Msa1390700 | 0.801298 | 9.616390e-49 | -8.615850e-47 |
Msa0430920 | Msa1392890 | 0.802401 | 5.710247e-49 | -8.615850e-47 |
Msa0430920 | Msa1392910 | 0.800414 | 1.457280e-48 | -8.615850e-47 |
Msa0430920 | Msa1394310 | 0.814585 | 1.429812e-51 | -8.615850e-47 |
Msa0430920 | Msa1410680 | 0.807304 | 5.396602e-50 | -8.615850e-47 |
Msa0430920 | Msa1416370 | 0.800711 | 1.267733e-48 | -8.615850e-47 |
Msa0430920 | Msa1420270 | 0.800245 | 1.577520e-48 | -8.615850e-47 |
Msa0430920 | Msa1437270 | 0.827051 | 1.937155e-54 | -8.615850e-47 |
Msa0430920 | Msa1437560 | 0.801856 | 7.390821e-49 | -8.615850e-47 |
Msa0430920 | Msa1445390 | -0.825814 | 3.817029e-54 | -8.615850e-47 |
Msa0430920 | Msa1449340 | -0.824543 | 7.625806e-54 | -8.615850e-47 |
Msa0430920 | Msa1457160 | 0.802607 | 5.178464e-49 | -8.615850e-47 |
Msa0430920 | Msa1458750 | 0.810984 | 8.781291e-51 | -8.615850e-47 |
Msa0430920 | Msa1462360 | 0.814851 | 1.247931e-51 | -8.615850e-47 |
Msa0430920 | Msa1466540 | 0.807661 | 4.533511e-50 | -8.615850e-47 |
Msa0241140 | Msa0430920 | 0.820600 | 6.297497e-53 | -8.615850e-47 |
Msa0267370 | Msa0430920 | 0.816547 | 5.228772e-52 | -8.615850e-47 |
Msa0288080 | Msa0430920 | 0.803580 | 3.256868e-49 | -8.615850e-47 |
Msa0288120 | Msa0430920 | 0.809838 | 1.552169e-50 | -8.615850e-47 |
Msa0296820 | Msa0430920 | 0.814397 | 1.572990e-51 | -8.615850e-47 |
Msa0296870 | Msa0430920 | 0.814486 | 1.503236e-51 | -8.615850e-47 |
Msa0303150 | Msa0430920 | 0.808388 | 3.174130e-50 | -8.615850e-47 |
Msa0317520 | Msa0430920 | 0.814804 | 1.278504e-51 | -8.615850e-47 |
Msa0317970 | Msa0430920 | 0.825531 | 4.456830e-54 | -8.615850e-47 |
Msa0336320 | Msa0430920 | 0.814445 | 1.534806e-51 | -8.615850e-47 |
Msa0342750 | Msa0430920 | 0.821350 | 4.230782e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 57 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GACTTGGATGTGTAATATTA+AGG | 0.194324 | 3_2:-82751557 | Msa0430920:three_prime_UTR |
CTGAAAAGAAGTTTCAATTT+AGG | 0.231345 | 3_2:-82751802 | Msa0430920:CDS |
GAAGCACGAACCAGAGAAAT+TGG | 0.232248 | 3_2:-82752537 | Msa0430920:five_prime_UTR |
CCATTGATTTACAATAAATA+AGG | 0.239329 | 3_2:+82751521 | None:intergenic |
ATAAAGGATTATTATTTCTA+TGG | 0.253131 | 3_2:+82752260 | None:intergenic |
GTTACTTTCACCTCTCTTAC+AGG | 0.254782 | 3_2:-82752132 | Msa0430920:five_prime_UTR |
ATCCCTCCTCTTTGTTAAAC+TGG | 0.287597 | 3_2:+82751695 | None:intergenic |
ATATAGAATTGAATGGTAAA+AGG | 0.288166 | 3_2:-82752157 | Msa0430920:five_prime_UTR |
TAAAATTACTTGAAATAAAA+AGG | 0.290916 | 3_2:-82752494 | Msa0430920:five_prime_UTR |
TAATAATCCTTTATTAGTTA+AGG | 0.291567 | 3_2:-82752251 | Msa0430920:five_prime_UTR |
CTCACACCCTTAACTAATAA+AGG | 0.304585 | 3_2:+82752244 | None:intergenic |
AATAATCCTTTATTAGTTAA+GGG | 0.340843 | 3_2:-82752250 | Msa0430920:five_prime_UTR |
CCTTATTTATTGTAAATCAA+TGG | 0.342117 | 3_2:-82751521 | Msa0430920:three_prime_UTR |
TATTTATACAAATATCAAAT+AGG | 0.364147 | 3_2:+82752318 | None:intergenic |
TTTCACTTTCAATGTACTCT+TGG | 0.377163 | 3_2:-82752636 | Msa0430920:five_prime_UTR |
AAGAAAAGATGAAAAGTGTA+TGG | 0.395163 | 3_2:-82751660 | Msa0430920:three_prime_UTR |
GTACTGTACCTGATACAATA+TGG | 0.402588 | 3_2:+82751828 | None:intergenic |
CTTATTTATTGTAAATCAAT+GGG | 0.402734 | 3_2:-82751520 | Msa0430920:three_prime_UTR |
GTGAAAGATAAGAAAGATCT+TGG | 0.408538 | 3_2:-82751745 | Msa0430920:three_prime_UTR |
TGTTTGGATTGTTTGCGATT+TGG | 0.408605 | 3_2:-82752445 | Msa0430920:five_prime_UTR |
TGAGCCACTACATCATGTTA+TGG | 0.412205 | 3_2:+82751631 | None:intergenic |
GAGGAGAACCATATTGTATC+AGG | 0.416982 | 3_2:-82751836 | Msa0430920:CDS |
TCTTTCTTATCTTTCACCTT+GGG | 0.419428 | 3_2:+82751751 | None:intergenic |
CATATCAACATAAACATTCA+TGG | 0.435825 | 3_2:+82752025 | None:intergenic |
ACGACAAAACCCAATTTCTC+TGG | 0.455514 | 3_2:+82752527 | None:intergenic |
CGTGGATTTGCGAACCGTAA+AGG | 0.455597 | 3_2:-82752585 | Msa0430920:five_prime_UTR |
GACCCATCAACTGGAGGAAA+AGG | 0.463787 | 3_2:+82752662 | None:intergenic |
ATCTTTCTTATCTTTCACCT+TGG | 0.466513 | 3_2:+82751750 | None:intergenic |
GTTTAACAAAGAGGAGGGAT+TGG | 0.488431 | 3_2:-82751692 | Msa0430920:three_prime_UTR |
AACACTGGAAAGTTGGCTAA+TGG | 0.488900 | 3_2:-82752107 | Msa0430920:five_prime_UTR |
CAATATGGTTCTCCTCTTCA+CGG | 0.490112 | 3_2:+82751843 | None:intergenic |
AGAGGTCATACAATCTTACT+TGG | 0.494820 | 3_2:-82752223 | Msa0430920:five_prime_UTR |
GGGGCTGTAATCCATGGAAA+TGG | 0.501769 | 3_2:-82752053 | Msa0430920:five_prime_UTR |
ACAGGACAACACTGGAAAGT+TGG | 0.504393 | 3_2:-82752114 | Msa0430920:five_prime_UTR |
TTATTCTATATAGAATTGAA+TGG | 0.509949 | 3_2:-82752164 | Msa0430920:five_prime_UTR |
AAGCACGAACCAGAGAAATT+GGG | 0.522543 | 3_2:-82752536 | Msa0430920:five_prime_UTR |
TCATGGGGAGACCATTTCCA+TGG | 0.527491 | 3_2:+82752042 | None:intergenic |
GAATATCTTGAGGAATATGT+TGG | 0.532265 | 3_2:-82751868 | Msa0430920:CDS |
AGAAAAGATGAAAAGTGTAT+GGG | 0.540681 | 3_2:-82751659 | Msa0430920:three_prime_UTR |
GTTGGAGGGGCTGTAATCCA+TGG | 0.544476 | 3_2:-82752059 | Msa0430920:five_prime_UTR |
ATATCAACATAAACATTCAT+GGG | 0.545871 | 3_2:+82752026 | None:intergenic |
TACCAGTTTAACAAAGAGGA+GGG | 0.568079 | 3_2:-82751697 | Msa0430920:three_prime_UTR |
TTATTAGTTAAGGGTGTGAG+AGG | 0.571930 | 3_2:-82752241 | Msa0430920:five_prime_UTR |
CTAGAGGAATACATATCTCG+TGG | 0.595031 | 3_2:-82752603 | Msa0430920:five_prime_UTR |
CCAGTGTTGTCCTGTAAGAG+AGG | 0.596104 | 3_2:+82752122 | None:intergenic |
TCTTGGATTTGTGTATCTAG+AGG | 0.597785 | 3_2:-82752619 | Msa0430920:five_prime_UTR |
GTATTACCAGTTTAACAAAG+AGG | 0.598288 | 3_2:-82751701 | Msa0430920:three_prime_UTR |
CCTCTCTTACAGGACAACAC+TGG | 0.607683 | 3_2:-82752122 | Msa0430920:five_prime_UTR |
TCTTGGAATCATGAAAGTCA+AGG | 0.609272 | 3_2:-82751728 | Msa0430920:three_prime_UTR |
TTACCAGTTTAACAAAGAGG+AGG | 0.617647 | 3_2:-82751698 | Msa0430920:three_prime_UTR |
TCAAGTGCAGGAATATCTTG+AGG | 0.627516 | 3_2:-82751878 | Msa0430920:intron |
AGGACCATAACATGATGTAG+TGG | 0.637466 | 3_2:-82751635 | Msa0430920:three_prime_UTR |
AAGATGAAAAGTGTATGGGA+AGG | 0.640402 | 3_2:-82751655 | Msa0430920:three_prime_UTR |
AATATGTTGGAACCGTGAAG+AGG | 0.650450 | 3_2:-82751855 | Msa0430920:CDS |
GTCATGACTTGATATACCCA+AGG | 0.651402 | 3_2:-82751767 | Msa0430920:exon |
TATCAACATAAACATTCATG+GGG | 0.688765 | 3_2:+82752027 | None:intergenic |
TATTTGGTAGTATACAACTG+TGG | 0.690004 | 3_2:-82752815 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAATTACTTGAAATAAAA+AGG | - | chr3_2:82751735-82751754 | Msa0430920:three_prime_UTR | 10.0% |
!! | TATTTATACAAATATCAAAT+AGG | + | chr3_2:82751914-82751933 | None:intergenic | 10.0% |
!! | TAAAATTACTTGAAATAAAA+AGG | - | chr3_2:82751735-82751754 | Msa0430920:three_prime_UTR | 10.0% |
!! | TATTTATACAAATATCAAAT+AGG | + | chr3_2:82751914-82751933 | None:intergenic | 10.0% |
!!! | ATAAAGGATTATTATTTCTA+TGG | + | chr3_2:82751972-82751991 | None:intergenic | 15.0% |
!! | TAATAATCCTTTATTAGTTA+AGG | - | chr3_2:82751978-82751997 | Msa0430920:intron | 15.0% |
!! | AATAATCCTTTATTAGTTAA+GGG | - | chr3_2:82751979-82751998 | Msa0430920:intron | 15.0% |
!! | AGATTAAATTTAAGAAAAAC+TGG | - | chr3_2:82752036-82752055 | Msa0430920:exon | 15.0% |
!! | TTATTCTATATAGAATTGAA+TGG | - | chr3_2:82752065-82752084 | Msa0430920:five_prime_UTR | 15.0% |
!! | CTTATTTATTGTAAATCAAT+GGG | - | chr3_2:82752709-82752728 | Msa0430920:five_prime_UTR | 15.0% |
!!! | ATAAAGGATTATTATTTCTA+TGG | + | chr3_2:82751972-82751991 | None:intergenic | 15.0% |
!! | TAATAATCCTTTATTAGTTA+AGG | - | chr3_2:82751978-82751997 | Msa0430920:intron | 15.0% |
!! | AATAATCCTTTATTAGTTAA+GGG | - | chr3_2:82751979-82751998 | Msa0430920:intron | 15.0% |
!! | AGATTAAATTTAAGAAAAAC+TGG | - | chr3_2:82752036-82752055 | Msa0430920:exon | 15.0% |
!! | TTATTCTATATAGAATTGAA+TGG | - | chr3_2:82752065-82752084 | Msa0430920:five_prime_UTR | 15.0% |
!! | CTTATTTATTGTAAATCAAT+GGG | - | chr3_2:82752709-82752728 | Msa0430920:five_prime_UTR | 15.0% |
!! | ATATAGAATTGAATGGTAAA+AGG | - | chr3_2:82752072-82752091 | Msa0430920:five_prime_UTR | 20.0% |
!! | ATATCAACATAAACATTCAT+GGG | + | chr3_2:82752206-82752225 | None:intergenic | 20.0% |
!! | TCATGTTAACATAAAAGATT+AGG | - | chr3_2:82752269-82752288 | Msa0430920:five_prime_UTR | 20.0% |
!!! | AAATTTTATATATCAAGTGC+AGG | - | chr3_2:82752339-82752358 | Msa0430920:five_prime_UTR | 20.0% |
!!! | CCATTGATTTACAATAAATA+AGG | + | chr3_2:82752711-82752730 | None:intergenic | 20.0% |
!!! | CCTTATTTATTGTAAATCAA+TGG | - | chr3_2:82752708-82752727 | Msa0430920:five_prime_UTR | 20.0% |
!! | ATATAGAATTGAATGGTAAA+AGG | - | chr3_2:82752072-82752091 | Msa0430920:five_prime_UTR | 20.0% |
!! | ATATCAACATAAACATTCAT+GGG | + | chr3_2:82752206-82752225 | None:intergenic | 20.0% |
!! | TCATGTTAACATAAAAGATT+AGG | - | chr3_2:82752269-82752288 | Msa0430920:five_prime_UTR | 20.0% |
!!! | AAATTTTATATATCAAGTGC+AGG | - | chr3_2:82752339-82752358 | Msa0430920:five_prime_UTR | 20.0% |
!!! | CCATTGATTTACAATAAATA+AGG | + | chr3_2:82752711-82752730 | None:intergenic | 20.0% |
!!! | CCTTATTTATTGTAAATCAA+TGG | - | chr3_2:82752708-82752727 | Msa0430920:five_prime_UTR | 20.0% |
!! | TTTTTATGAGTGAGATTTCT+AGG | - | chr3_2:82751475-82751494 | Msa0430920:three_prime_UTR | 25.0% |
!!! | TCGTAGTTATTTTATTGAGA+AGG | + | chr3_2:82751674-82751693 | None:intergenic | 25.0% |
!! | GATTTTTGTTGAATGTTGTT+TGG | - | chr3_2:82751768-82751787 | Msa0430920:exon | 25.0% |
!!! | ACACAACTATTGATTTTTCT+AGG | - | chr3_2:82751847-82751866 | Msa0430920:CDS | 25.0% |
! | TATCAACATAAACATTCATG+GGG | + | chr3_2:82752205-82752224 | None:intergenic | 25.0% |
! | CATATCAACATAAACATTCA+TGG | + | chr3_2:82752207-82752226 | None:intergenic | 25.0% |
! | CTGAAAAGAAGTTTCAATTT+AGG | - | chr3_2:82752427-82752446 | Msa0430920:five_prime_UTR | 25.0% |
!! | AAGAAAAGATGAAAAGTGTA+TGG | - | chr3_2:82752569-82752588 | Msa0430920:five_prime_UTR | 25.0% |
!! | AGAAAAGATGAAAAGTGTAT+GGG | - | chr3_2:82752570-82752589 | Msa0430920:five_prime_UTR | 25.0% |
!!! | TTCTTTGTAATGTTTTGACT+TGG | - | chr3_2:82752656-82752675 | Msa0430920:five_prime_UTR | 25.0% |
!! | TTTTTATGAGTGAGATTTCT+AGG | - | chr3_2:82751475-82751494 | Msa0430920:three_prime_UTR | 25.0% |
!!! | TCGTAGTTATTTTATTGAGA+AGG | + | chr3_2:82751674-82751693 | None:intergenic | 25.0% |
!! | GATTTTTGTTGAATGTTGTT+TGG | - | chr3_2:82751768-82751787 | Msa0430920:exon | 25.0% |
!!! | ACACAACTATTGATTTTTCT+AGG | - | chr3_2:82751847-82751866 | Msa0430920:CDS | 25.0% |
! | TATCAACATAAACATTCATG+GGG | + | chr3_2:82752205-82752224 | None:intergenic | 25.0% |
! | CATATCAACATAAACATTCA+TGG | + | chr3_2:82752207-82752226 | None:intergenic | 25.0% |
! | CTGAAAAGAAGTTTCAATTT+AGG | - | chr3_2:82752427-82752446 | Msa0430920:five_prime_UTR | 25.0% |
!! | AAGAAAAGATGAAAAGTGTA+TGG | - | chr3_2:82752569-82752588 | Msa0430920:five_prime_UTR | 25.0% |
!! | AGAAAAGATGAAAAGTGTAT+GGG | - | chr3_2:82752570-82752589 | Msa0430920:five_prime_UTR | 25.0% |
!!! | TTCTTTGTAATGTTTTGACT+TGG | - | chr3_2:82752656-82752675 | Msa0430920:five_prime_UTR | 25.0% |
TTTCACTTTCAATGTACTCT+TGG | - | chr3_2:82751593-82751612 | Msa0430920:three_prime_UTR | 30.0% | |
! | ATTGAGAAGGTTTTCCTTTA+CGG | + | chr3_2:82751661-82751680 | None:intergenic | 30.0% |
TGTGTTAATGTGCTATCTTT+AGG | - | chr3_2:82752301-82752320 | Msa0430920:five_prime_UTR | 30.0% | |
GAATATCTTGAGGAATATGT+TGG | - | chr3_2:82752361-82752380 | Msa0430920:five_prime_UTR | 30.0% | |
TCTTTCTTATCTTTCACCTT+GGG | + | chr3_2:82752481-82752500 | None:intergenic | 30.0% | |
ATCTTTCTTATCTTTCACCT+TGG | + | chr3_2:82752482-82752501 | None:intergenic | 30.0% | |
GTGAAAGATAAGAAAGATCT+TGG | - | chr3_2:82752484-82752503 | Msa0430920:five_prime_UTR | 30.0% | |
GTATTACCAGTTTAACAAAG+AGG | - | chr3_2:82752528-82752547 | Msa0430920:five_prime_UTR | 30.0% | |
GACTTGGATGTGTAATATTA+AGG | - | chr3_2:82752672-82752691 | Msa0430920:five_prime_UTR | 30.0% | |
TTTCACTTTCAATGTACTCT+TGG | - | chr3_2:82751593-82751612 | Msa0430920:three_prime_UTR | 30.0% | |
! | ATTGAGAAGGTTTTCCTTTA+CGG | + | chr3_2:82751661-82751680 | None:intergenic | 30.0% |
TGTGTTAATGTGCTATCTTT+AGG | - | chr3_2:82752301-82752320 | Msa0430920:five_prime_UTR | 30.0% | |
GAATATCTTGAGGAATATGT+TGG | - | chr3_2:82752361-82752380 | Msa0430920:five_prime_UTR | 30.0% | |
TCTTTCTTATCTTTCACCTT+GGG | + | chr3_2:82752481-82752500 | None:intergenic | 30.0% | |
ATCTTTCTTATCTTTCACCT+TGG | + | chr3_2:82752482-82752501 | None:intergenic | 30.0% | |
GTGAAAGATAAGAAAGATCT+TGG | - | chr3_2:82752484-82752503 | Msa0430920:five_prime_UTR | 30.0% | |
GTATTACCAGTTTAACAAAG+AGG | - | chr3_2:82752528-82752547 | Msa0430920:five_prime_UTR | 30.0% | |
GACTTGGATGTGTAATATTA+AGG | - | chr3_2:82752672-82752691 | Msa0430920:five_prime_UTR | 30.0% | |
TCTTGGATTTGTGTATCTAG+AGG | - | chr3_2:82751610-82751629 | Msa0430920:three_prime_UTR | 35.0% | |
TGTTTGGATTGTTTGCGATT+TGG | - | chr3_2:82751784-82751803 | Msa0430920:CDS | 35.0% | |
CTCACACCCTTAACTAATAA+AGG | + | chr3_2:82751988-82752007 | None:intergenic | 35.0% | |
! | TTATTAGTTAAGGGTGTGAG+AGG | - | chr3_2:82751988-82752007 | Msa0430920:intron | 35.0% |
AGAGGTCATACAATCTTACT+TGG | - | chr3_2:82752006-82752025 | Msa0430920:CDS | 35.0% | |
! | TCAACTTTTGTGAGTGAAGT+TGG | - | chr3_2:82752152-82752171 | Msa0430920:five_prime_UTR | 35.0% |
GTACTGTACCTGATACAATA+TGG | + | chr3_2:82752404-82752423 | None:intergenic | 35.0% | |
TCTTGGAATCATGAAAGTCA+AGG | - | chr3_2:82752501-82752520 | Msa0430920:five_prime_UTR | 35.0% | |
TTACCAGTTTAACAAAGAGG+AGG | - | chr3_2:82752531-82752550 | Msa0430920:five_prime_UTR | 35.0% | |
TACCAGTTTAACAAAGAGGA+GGG | - | chr3_2:82752532-82752551 | Msa0430920:five_prime_UTR | 35.0% | |
! | AAGATGAAAAGTGTATGGGA+AGG | - | chr3_2:82752574-82752593 | Msa0430920:five_prime_UTR | 35.0% |
TCTTGGATTTGTGTATCTAG+AGG | - | chr3_2:82751610-82751629 | Msa0430920:three_prime_UTR | 35.0% | |
TGTTTGGATTGTTTGCGATT+TGG | - | chr3_2:82751784-82751803 | Msa0430920:CDS | 35.0% | |
CTCACACCCTTAACTAATAA+AGG | + | chr3_2:82751988-82752007 | None:intergenic | 35.0% | |
! | TTATTAGTTAAGGGTGTGAG+AGG | - | chr3_2:82751988-82752007 | Msa0430920:intron | 35.0% |
AGAGGTCATACAATCTTACT+TGG | - | chr3_2:82752006-82752025 | Msa0430920:CDS | 35.0% | |
! | TCAACTTTTGTGAGTGAAGT+TGG | - | chr3_2:82752152-82752171 | Msa0430920:five_prime_UTR | 35.0% |
GTACTGTACCTGATACAATA+TGG | + | chr3_2:82752404-82752423 | None:intergenic | 35.0% | |
TCTTGGAATCATGAAAGTCA+AGG | - | chr3_2:82752501-82752520 | Msa0430920:five_prime_UTR | 35.0% | |
TTACCAGTTTAACAAAGAGG+AGG | - | chr3_2:82752531-82752550 | Msa0430920:five_prime_UTR | 35.0% | |
TACCAGTTTAACAAAGAGGA+GGG | - | chr3_2:82752532-82752551 | Msa0430920:five_prime_UTR | 35.0% | |
! | AAGATGAAAAGTGTATGGGA+AGG | - | chr3_2:82752574-82752593 | Msa0430920:five_prime_UTR | 35.0% |
!!! | TTCGTTGCTTTTTTGCTCTG+TGG | - | chr3_2:82751519-82751538 | Msa0430920:three_prime_UTR | 40.0% |
CTAGAGGAATACATATCTCG+TGG | - | chr3_2:82751626-82751645 | Msa0430920:three_prime_UTR | 40.0% | |
AAGCACGAACCAGAGAAATT+GGG | - | chr3_2:82751693-82751712 | Msa0430920:three_prime_UTR | 40.0% | |
ACGACAAAACCCAATTTCTC+TGG | + | chr3_2:82751705-82751724 | None:intergenic | 40.0% | |
!! | GAGAAATTGGGTTTTGTCGT+CGG | - | chr3_2:82751705-82751724 | Msa0430920:three_prime_UTR | 40.0% |
!! | AGAAATTGGGTTTTGTCGTC+GGG | - | chr3_2:82751706-82751725 | Msa0430920:three_prime_UTR | 40.0% |
! | GTTACTTTCACCTCTCTTAC+AGG | - | chr3_2:82752097-82752116 | Msa0430920:five_prime_UTR | 40.0% |
AACACTGGAAAGTTGGCTAA+TGG | - | chr3_2:82752122-82752141 | Msa0430920:five_prime_UTR | 40.0% | |
! | ACTTTTGTGAGTGAAGTTGG+AGG | - | chr3_2:82752155-82752174 | Msa0430920:five_prime_UTR | 40.0% |
! | CTTTTGTGAGTGAAGTTGGA+GGG | - | chr3_2:82752156-82752175 | Msa0430920:five_prime_UTR | 40.0% |
! | TTTTGTGAGTGAAGTTGGAG+GGG | - | chr3_2:82752157-82752176 | Msa0430920:five_prime_UTR | 40.0% |
TCAAGTGCAGGAATATCTTG+AGG | - | chr3_2:82752351-82752370 | Msa0430920:five_prime_UTR | 40.0% | |
AATATGTTGGAACCGTGAAG+AGG | - | chr3_2:82752374-82752393 | Msa0430920:five_prime_UTR | 40.0% | |
CAATATGGTTCTCCTCTTCA+CGG | + | chr3_2:82752389-82752408 | None:intergenic | 40.0% | |
GAGGAGAACCATATTGTATC+AGG | - | chr3_2:82752393-82752412 | Msa0430920:five_prime_UTR | 40.0% | |
GTCATGACTTGATATACCCA+AGG | - | chr3_2:82752462-82752481 | Msa0430920:five_prime_UTR | 40.0% | |
ATCCCTCCTCTTTGTTAAAC+TGG | + | chr3_2:82752537-82752556 | None:intergenic | 40.0% | |
GTTTAACAAAGAGGAGGGAT+TGG | - | chr3_2:82752537-82752556 | Msa0430920:five_prime_UTR | 40.0% | |
AGGACCATAACATGATGTAG+TGG | - | chr3_2:82752594-82752613 | Msa0430920:five_prime_UTR | 40.0% | |
TGAGCCACTACATCATGTTA+TGG | + | chr3_2:82752601-82752620 | None:intergenic | 40.0% | |
!!! | TTCGTTGCTTTTTTGCTCTG+TGG | - | chr3_2:82751519-82751538 | Msa0430920:three_prime_UTR | 40.0% |
CTAGAGGAATACATATCTCG+TGG | - | chr3_2:82751626-82751645 | Msa0430920:three_prime_UTR | 40.0% | |
AAGCACGAACCAGAGAAATT+GGG | - | chr3_2:82751693-82751712 | Msa0430920:three_prime_UTR | 40.0% | |
ACGACAAAACCCAATTTCTC+TGG | + | chr3_2:82751705-82751724 | None:intergenic | 40.0% | |
!! | GAGAAATTGGGTTTTGTCGT+CGG | - | chr3_2:82751705-82751724 | Msa0430920:three_prime_UTR | 40.0% |
!! | AGAAATTGGGTTTTGTCGTC+GGG | - | chr3_2:82751706-82751725 | Msa0430920:three_prime_UTR | 40.0% |
! | GTTACTTTCACCTCTCTTAC+AGG | - | chr3_2:82752097-82752116 | Msa0430920:five_prime_UTR | 40.0% |
AACACTGGAAAGTTGGCTAA+TGG | - | chr3_2:82752122-82752141 | Msa0430920:five_prime_UTR | 40.0% | |
! | ACTTTTGTGAGTGAAGTTGG+AGG | - | chr3_2:82752155-82752174 | Msa0430920:five_prime_UTR | 40.0% |
! | CTTTTGTGAGTGAAGTTGGA+GGG | - | chr3_2:82752156-82752175 | Msa0430920:five_prime_UTR | 40.0% |
! | TTTTGTGAGTGAAGTTGGAG+GGG | - | chr3_2:82752157-82752176 | Msa0430920:five_prime_UTR | 40.0% |
TCAAGTGCAGGAATATCTTG+AGG | - | chr3_2:82752351-82752370 | Msa0430920:five_prime_UTR | 40.0% | |
AATATGTTGGAACCGTGAAG+AGG | - | chr3_2:82752374-82752393 | Msa0430920:five_prime_UTR | 40.0% | |
CAATATGGTTCTCCTCTTCA+CGG | + | chr3_2:82752389-82752408 | None:intergenic | 40.0% | |
GAGGAGAACCATATTGTATC+AGG | - | chr3_2:82752393-82752412 | Msa0430920:five_prime_UTR | 40.0% | |
GTCATGACTTGATATACCCA+AGG | - | chr3_2:82752462-82752481 | Msa0430920:five_prime_UTR | 40.0% | |
ATCCCTCCTCTTTGTTAAAC+TGG | + | chr3_2:82752537-82752556 | None:intergenic | 40.0% | |
GTTTAACAAAGAGGAGGGAT+TGG | - | chr3_2:82752537-82752556 | Msa0430920:five_prime_UTR | 40.0% | |
AGGACCATAACATGATGTAG+TGG | - | chr3_2:82752594-82752613 | Msa0430920:five_prime_UTR | 40.0% | |
TGAGCCACTACATCATGTTA+TGG | + | chr3_2:82752601-82752620 | None:intergenic | 40.0% | |
!!! | TTGCTTTTTTGCTCTGTGGC+AGG | - | chr3_2:82751523-82751542 | Msa0430920:three_prime_UTR | 45.0% |
! | TAGCCTTTTCCTCCAGTTGA+TGG | - | chr3_2:82751564-82751583 | Msa0430920:three_prime_UTR | 45.0% |
! | AGCCTTTTCCTCCAGTTGAT+GGG | - | chr3_2:82751565-82751584 | Msa0430920:three_prime_UTR | 45.0% |
AAAAACGACCCATCAACTGG+AGG | + | chr3_2:82751576-82751595 | None:intergenic | 45.0% | |
GTGAAAAACGACCCATCAAC+TGG | + | chr3_2:82751579-82751598 | None:intergenic | 45.0% | |
GAAGCACGAACCAGAGAAAT+TGG | - | chr3_2:82751692-82751711 | Msa0430920:three_prime_UTR | 45.0% | |
ACAGGACAACACTGGAAAGT+TGG | - | chr3_2:82752115-82752134 | Msa0430920:five_prime_UTR | 45.0% | |
!!! | TTGCTTTTTTGCTCTGTGGC+AGG | - | chr3_2:82751523-82751542 | Msa0430920:three_prime_UTR | 45.0% |
! | TAGCCTTTTCCTCCAGTTGA+TGG | - | chr3_2:82751564-82751583 | Msa0430920:three_prime_UTR | 45.0% |
! | AGCCTTTTCCTCCAGTTGAT+GGG | - | chr3_2:82751565-82751584 | Msa0430920:three_prime_UTR | 45.0% |
AAAAACGACCCATCAACTGG+AGG | + | chr3_2:82751576-82751595 | None:intergenic | 45.0% | |
GTGAAAAACGACCCATCAAC+TGG | + | chr3_2:82751579-82751598 | None:intergenic | 45.0% | |
GAAGCACGAACCAGAGAAAT+TGG | - | chr3_2:82751692-82751711 | Msa0430920:three_prime_UTR | 45.0% | |
ACAGGACAACACTGGAAAGT+TGG | - | chr3_2:82752115-82752134 | Msa0430920:five_prime_UTR | 45.0% | |
GACCCATCAACTGGAGGAAA+AGG | + | chr3_2:82751570-82751589 | None:intergenic | 50.0% | |
CGTGGATTTGCGAACCGTAA+AGG | - | chr3_2:82751644-82751663 | Msa0430920:three_prime_UTR | 50.0% | |
CCAGTGTTGTCCTGTAAGAG+AGG | + | chr3_2:82752110-82752129 | None:intergenic | 50.0% | |
CCTCTCTTACAGGACAACAC+TGG | - | chr3_2:82752107-82752126 | Msa0430920:five_prime_UTR | 50.0% | |
GGGGCTGTAATCCATGGAAA+TGG | - | chr3_2:82752176-82752195 | Msa0430920:five_prime_UTR | 50.0% | |
TCATGGGGAGACCATTTCCA+TGG | + | chr3_2:82752190-82752209 | None:intergenic | 50.0% | |
GACCCATCAACTGGAGGAAA+AGG | + | chr3_2:82751570-82751589 | None:intergenic | 50.0% | |
CGTGGATTTGCGAACCGTAA+AGG | - | chr3_2:82751644-82751663 | Msa0430920:three_prime_UTR | 50.0% | |
CCAGTGTTGTCCTGTAAGAG+AGG | + | chr3_2:82752110-82752129 | None:intergenic | 50.0% | |
CCTCTCTTACAGGACAACAC+TGG | - | chr3_2:82752107-82752126 | Msa0430920:five_prime_UTR | 50.0% | |
GGGGCTGTAATCCATGGAAA+TGG | - | chr3_2:82752176-82752195 | Msa0430920:five_prime_UTR | 50.0% | |
TCATGGGGAGACCATTTCCA+TGG | + | chr3_2:82752190-82752209 | None:intergenic | 50.0% | |
GTTGGAGGGGCTGTAATCCA+TGG | - | chr3_2:82752170-82752189 | Msa0430920:five_prime_UTR | 55.0% | |
GTTGGAGGGGCTGTAATCCA+TGG | - | chr3_2:82752170-82752189 | Msa0430920:five_prime_UTR | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_2 | gene | 82751420 | 82752831 | 82751420 | ID=Msa0430920;Name=Msa0430920 |
chr3_2 | mRNA | 82751420 | 82752831 | 82751420 | ID=Msa0430920-mRNA-1;Parent=Msa0430920;Name=Msa0430920-mRNA-1;_AED=0.17;_eAED=0.17;_QI=786|1|1|1|1|1|2|363|53 |
chr3_2 | exon | 82751420 | 82751890 | 82751420 | ID=Msa0430920-mRNA-1:exon:23046;Parent=Msa0430920-mRNA-1 |
chr3_2 | exon | 82751992 | 82752831 | 82751992 | ID=Msa0430920-mRNA-1:exon:23045;Parent=Msa0430920-mRNA-1 |
chr3_2 | five_prime_UTR | 82752046 | 82752831 | 82752046 | ID=Msa0430920-mRNA-1:five_prime_utr;Parent=Msa0430920-mRNA-1 |
chr3_2 | CDS | 82751992 | 82752045 | 82751992 | ID=Msa0430920-mRNA-1:cds;Parent=Msa0430920-mRNA-1 |
chr3_2 | CDS | 82751783 | 82751890 | 82751783 | ID=Msa0430920-mRNA-1:cds;Parent=Msa0430920-mRNA-1 |
chr3_2 | three_prime_UTR | 82751420 | 82751782 | 82751420 | ID=Msa0430920-mRNA-1:three_prime_utr;Parent=Msa0430920-mRNA-1 |
Gene Sequence |
Protein sequence |