Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298120 | XP_024631594.1 | 85.128 | 390 | 21 | 3 | 1 | 353 | 1 | 390 | 0.0 | 649 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298120 | sp|Q9SQQ9|PHL9_ARATH | 51.358 | 405 | 131 | 11 | 2 | 353 | 3 | 394 | 2.17e-113 | 338 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298120 | G7ITS9 | 85.347 | 389 | 21 | 3 | 1 | 353 | 1 | 389 | 0.0 | 649 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0298120 | TF | GARP-G2-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004920 | Msa0298120 | 0.816147 | 6.422412e-52 | -8.615850e-47 |
| Msa0032370 | Msa0298120 | 0.820263 | 7.521551e-53 | -8.615850e-47 |
| Msa0040450 | Msa0298120 | 0.804351 | 2.252495e-49 | -8.615850e-47 |
| Msa0044020 | Msa0298120 | 0.806738 | 7.109607e-50 | -8.615850e-47 |
| Msa0048000 | Msa0298120 | 0.804271 | 2.340255e-49 | -8.615850e-47 |
| Msa0050730 | Msa0298120 | 0.828173 | 1.041488e-54 | -8.615850e-47 |
| Msa0050760 | Msa0298120 | 0.815038 | 1.134146e-51 | -8.615850e-47 |
| Msa0057140 | Msa0298120 | 0.810070 | 1.383512e-50 | -8.615850e-47 |
| Msa0076000 | Msa0298120 | 0.804905 | 1.725637e-49 | -8.615850e-47 |
| Msa0094920 | Msa0298120 | 0.802464 | 5.541518e-49 | -8.615850e-47 |
| Msa0105420 | Msa0298120 | 0.816687 | 4.862322e-52 | -8.615850e-47 |
| Msa0113160 | Msa0298120 | 0.802952 | 4.394210e-49 | -8.615850e-47 |
| Msa0124340 | Msa0298120 | 0.807478 | 4.956667e-50 | -8.615850e-47 |
| Msa0172350 | Msa0298120 | 0.812709 | 3.698051e-51 | -8.615850e-47 |
| Msa0173990 | Msa0298120 | 0.800220 | 1.596100e-48 | -8.615850e-47 |
| Msa0184020 | Msa0298120 | 0.801092 | 1.059753e-48 | -8.615850e-47 |
| Msa0185590 | Msa0298120 | 0.806716 | 7.186202e-50 | -8.615850e-47 |
| Msa0205850 | Msa0298120 | 0.816853 | 4.464630e-52 | -8.615850e-47 |
| Msa0217400 | Msa0298120 | 0.806783 | 6.956631e-50 | -8.615850e-47 |
| Msa0219070 | Msa0298120 | 0.869405 | 3.173980e-66 | -8.615850e-47 |
| Msa0227510 | Msa0298120 | 0.800689 | 1.280821e-48 | -8.615850e-47 |
| Msa0235890 | Msa0298120 | 0.811961 | 5.387700e-51 | -8.615850e-47 |
| Msa0236440 | Msa0298120 | 0.816634 | 4.999414e-52 | -8.615850e-47 |
| Msa0243690 | Msa0298120 | 0.816467 | 5.449324e-52 | -8.615850e-47 |
| Msa0245850 | Msa0298120 | 0.812715 | 3.687428e-51 | -8.615850e-47 |
| Msa0246430 | Msa0298120 | 0.803081 | 4.133191e-49 | -8.615850e-47 |
| Msa0260810 | Msa0298120 | 0.815089 | 1.105201e-51 | -8.615850e-47 |
| Msa0267760 | Msa0298120 | 0.805161 | 1.526018e-49 | -8.615850e-47 |
| Msa0282250 | Msa0298120 | 0.813934 | 1.990790e-51 | -8.615850e-47 |
| Msa0287310 | Msa0298120 | 0.833701 | 4.584522e-56 | -8.615850e-47 |
| Msa0298120 | Msa0304290 | 0.802384 | 5.756008e-49 | -8.615850e-47 |
| Msa0298120 | Msa0304330 | 0.801942 | 7.096184e-49 | -8.615850e-47 |
| Msa0298120 | Msa0323080 | 0.804415 | 2.184218e-49 | -8.615850e-47 |
| Msa0298120 | Msa0323180 | 0.807152 | 5.813045e-50 | -8.615850e-47 |
| Msa0298120 | Msa0325850 | 0.833519 | 5.089880e-56 | -8.615850e-47 |
| Msa0298120 | Msa0335040 | 0.840088 | 1.073050e-57 | -8.615850e-47 |
| Msa0298120 | Msa0337850 | 0.806782 | 6.957875e-50 | -8.615850e-47 |
| Msa0298120 | Msa0355270 | 0.816659 | 4.933606e-52 | -8.615850e-47 |
| Msa0298120 | Msa0371560 | 0.803010 | 4.275256e-49 | -8.615850e-47 |
| Msa0298120 | Msa0372660 | 0.813925 | 1.999855e-51 | -8.615850e-47 |
| Msa0298120 | Msa0402330 | 0.810788 | 9.685939e-51 | -8.615850e-47 |
| Msa0298120 | Msa0413450 | 0.805204 | 1.494547e-49 | -8.615850e-47 |
| Msa0298120 | Msa0415810 | 0.807506 | 4.888528e-50 | -8.615850e-47 |
| Msa0298120 | Msa0426330 | 0.827114 | 1.870826e-54 | -8.615850e-47 |
| Msa0298120 | Msa0464900 | 0.810779 | 9.729293e-51 | -8.615850e-47 |
| Msa0298120 | Msa0480320 | 0.805258 | 1.456098e-49 | -8.615850e-47 |
| Msa0298120 | Msa0484780 | 0.837279 | 5.708283e-57 | -8.615850e-47 |
| Msa0298120 | Msa0485120 | 0.810810 | 9.577167e-51 | -8.615850e-47 |
| Msa0298120 | Msa0526710 | 0.802557 | 5.300975e-49 | -8.615850e-47 |
| Msa0298120 | Msa0534590 | 0.806520 | 7.904026e-50 | -8.615850e-47 |
| Msa0298120 | Msa0568820 | 0.823753 | 1.169147e-53 | -8.615850e-47 |
| Msa0298120 | Msa0577220 | 0.813291 | 2.757094e-51 | -8.615850e-47 |
| Msa0298120 | Msa0610590 | 0.802571 | 5.267235e-49 | -8.615850e-47 |
| Msa0298120 | Msa0619070 | 0.831443 | 1.664500e-55 | -8.615850e-47 |
| Msa0298120 | Msa0622340 | 0.805155 | 1.530263e-49 | -8.615850e-47 |
| Msa0298120 | Msa0631120 | 0.817132 | 3.864765e-52 | -8.615850e-47 |
| Msa0298120 | Msa0638280 | 0.805692 | 1.180713e-49 | -8.615850e-47 |
| Msa0298120 | Msa0677270 | 0.808357 | 3.223281e-50 | -8.615850e-47 |
| Msa0298120 | Msa0693380 | 0.815487 | 9.013327e-52 | -8.615850e-47 |
| Msa0298120 | Msa0706370 | 0.802640 | 5.096934e-49 | -8.615850e-47 |
| Msa0298120 | Msa0726860 | 0.801503 | 8.731685e-49 | -8.615850e-47 |
| Msa0298120 | Msa0739120 | 0.827708 | 1.347276e-54 | -8.615850e-47 |
| Msa0298120 | Msa0767220 | 0.807685 | 4.479945e-50 | -8.615850e-47 |
| Msa0298120 | Msa0788710 | 0.820223 | 7.683552e-53 | -8.615850e-47 |
| Msa0298120 | Msa0814320 | 0.807805 | 4.223621e-50 | -8.615850e-47 |
| Msa0298120 | Msa0822990 | 0.802991 | 4.313620e-49 | -8.615850e-47 |
| Msa0298120 | Msa0829620 | 0.800052 | 1.727040e-48 | -8.615850e-47 |
| Msa0298120 | Msa0863370 | 0.812314 | 4.513156e-51 | -8.615850e-47 |
| Msa0298120 | Msa0863450 | 0.801188 | 1.012832e-48 | -8.615850e-47 |
| Msa0298120 | Msa0870620 | 0.811340 | 7.351184e-51 | -8.615850e-47 |
| Msa0298120 | Msa0870690 | 0.816873 | 4.417605e-52 | -8.615850e-47 |
| Msa0298120 | Msa0882510 | 0.831182 | 1.929770e-55 | -8.615850e-47 |
| Msa0298120 | Msa0888320 | 0.803010 | 4.274632e-49 | -8.615850e-47 |
| Msa0298120 | Msa0908170 | 0.831609 | 1.514572e-55 | -8.615850e-47 |
| Msa0298120 | Msa0910980 | -0.806614 | 7.553234e-50 | -8.615850e-47 |
| Msa0298120 | Msa0933440 | 0.819082 | 1.399801e-52 | -8.615850e-47 |
| Msa0298120 | Msa0944770 | 0.823844 | 1.112826e-53 | -8.615850e-47 |
| Msa0298120 | Msa0960160 | 0.812797 | 3.537609e-51 | -8.615850e-47 |
| Msa0298120 | Msa0974530 | 0.800116 | 1.675684e-48 | -8.615850e-47 |
| Msa0298120 | Msa0976310 | 0.800423 | 1.451654e-48 | -8.615850e-47 |
| Msa0298120 | Msa0993530 | 0.807039 | 6.141328e-50 | -8.615850e-47 |
| Msa0298120 | Msa1009780 | 0.802981 | 4.333806e-49 | -8.615850e-47 |
| Msa0298120 | Msa1040890 | 0.809865 | 1.531448e-50 | -8.615850e-47 |
| Msa0298120 | Msa1082500 | 0.825880 | 3.681538e-54 | -8.615850e-47 |
| Msa0298120 | Msa1087470 | 0.810167 | 1.318698e-50 | -8.615850e-47 |
| Msa0298120 | Msa1100720 | 0.808781 | 2.616802e-50 | -8.615850e-47 |
| Msa0298120 | Msa1133710 | 0.813699 | 2.242134e-51 | -8.615850e-47 |
| Msa0298120 | Msa1172670 | 0.828572 | 8.346260e-55 | -8.615850e-47 |
| Msa0298120 | Msa1185540 | 0.832819 | 7.605606e-56 | -8.615850e-47 |
| Msa0298120 | Msa1218650 | 0.805078 | 1.587986e-49 | -8.615850e-47 |
| Msa0298120 | Msa1233500 | 0.804534 | 2.063340e-49 | -8.615850e-47 |
| Msa0298120 | Msa1237030 | 0.807688 | 4.472331e-50 | -8.615850e-47 |
| Msa0298120 | Msa1254510 | 0.806539 | 7.832443e-50 | -8.615850e-47 |
| Msa0298120 | Msa1254710 | 0.806443 | 8.207169e-50 | -8.615850e-47 |
| Msa0298120 | Msa1276190 | 0.824143 | 9.469567e-54 | -8.615850e-47 |
| Msa0298120 | Msa1280560 | 0.822237 | 2.637104e-53 | -8.615850e-47 |
| Msa0298120 | Msa1297090 | 0.804603 | 1.995646e-49 | -8.615850e-47 |
| Msa0298120 | Msa1303160 | 0.810577 | 1.075407e-50 | -8.615850e-47 |
| Msa0298120 | Msa1314340 | 0.806892 | 6.596268e-50 | -8.615850e-47 |
| Msa0298120 | Msa1316830 | 0.801307 | 9.577176e-49 | -8.615850e-47 |
| Msa0298120 | Msa1320740 | 0.812740 | 3.641206e-51 | -8.615850e-47 |
| Msa0298120 | Msa1340020 | 0.802424 | 5.646899e-49 | -8.615850e-47 |
| Msa0298120 | Msa1340650 | 0.805022 | 1.631679e-49 | -8.615850e-47 |
| Msa0298120 | Msa1362510 | 0.808589 | 2.875846e-50 | -8.615850e-47 |
| Msa0298120 | Msa1363890 | 0.816805 | 4.576759e-52 | -8.615850e-47 |
| Msa0298120 | Msa1404540 | 0.824059 | 9.909413e-54 | -8.615850e-47 |
| Msa0298120 | Msa1408790 | 0.809327 | 1.998936e-50 | -8.615850e-47 |
| Msa0298120 | Msa1419110 | 0.804929 | 1.706278e-49 | -8.615850e-47 |
| Msa0298120 | Msa1423450 | 0.820133 | 8.056527e-53 | -8.615850e-47 |
| Msa0298120 | Msa1431060 | 0.822544 | 2.238515e-53 | -8.615850e-47 |
| Msa0298120 | Msa1439230 | 0.803959 | 2.717359e-49 | -8.615850e-47 |
| Msa0298120 | Msa1439960 | 0.803813 | 2.914854e-49 | -8.615850e-47 |
| Msa0298120 | Msa1440600 | 0.816838 | 4.498762e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298120 | MtrunA17_Chr2g0321461 | 85.347 | 389 | 21 | 3 | 1 | 353 | 1 | 389 | 0.0 | 649 |
| Msa0298120 | MtrunA17_Chr6g0461641 | 48.533 | 375 | 121 | 15 | 38 | 353 | 35 | 396 | 2.31e-85 | 263 |
| Msa0298120 | MtrunA17_Chr5g0417521 | 52.308 | 195 | 66 | 3 | 38 | 205 | 8 | 202 | 4.11e-59 | 194 |
| Msa0298120 | MtrunA17_Chr4g0042451 | 52.041 | 196 | 66 | 4 | 38 | 205 | 10 | 205 | 7.02e-56 | 186 |
| Msa0298120 | MtrunA17_Chr8g0356501 | 54.248 | 153 | 52 | 2 | 35 | 169 | 27 | 179 | 4.82e-47 | 162 |
| Msa0298120 | MtrunA17_Chr5g0409731 | 49.162 | 179 | 62 | 5 | 38 | 189 | 18 | 194 | 5.62e-46 | 158 |
| Msa0298120 | MtrunA17_Chr2g0310011 | 56.934 | 137 | 41 | 2 | 35 | 153 | 25 | 161 | 7.57e-43 | 152 |
| Msa0298120 | MtrunA17_Chr7g0254981 | 44.751 | 181 | 73 | 4 | 44 | 201 | 49 | 225 | 1.45e-38 | 139 |
| Msa0298120 | MtrunA17_Chr7g0261911 | 46.250 | 160 | 62 | 3 | 21 | 158 | 233 | 390 | 9.55e-38 | 141 |
| Msa0298120 | MtrunA17_Chr2g0291021 | 44.231 | 156 | 68 | 2 | 27 | 164 | 31 | 185 | 1.03e-35 | 132 |
| Msa0298120 | MtrunA17_Chr1g0190301 | 45.270 | 148 | 56 | 3 | 31 | 158 | 161 | 303 | 1.54e-34 | 130 |
| Msa0298120 | MtrunA17_Chr1g0175091 | 44.512 | 164 | 69 | 3 | 27 | 168 | 236 | 399 | 7.85e-34 | 129 |
| Msa0298120 | MtrunA17_Chr1g0197171 | 37.374 | 198 | 99 | 3 | 12 | 185 | 11 | 207 | 5.12e-33 | 124 |
| Msa0298120 | MtrunA17_Chr7g0274471 | 45.652 | 138 | 55 | 3 | 44 | 164 | 217 | 351 | 8.71e-32 | 124 |
| Msa0298120 | MtrunA17_Chr7g0258551 | 45.113 | 133 | 59 | 2 | 44 | 162 | 211 | 343 | 2.50e-31 | 122 |
| Msa0298120 | MtrunA17_Chr2g0290991 | 36.437 | 247 | 103 | 8 | 27 | 225 | 19 | 259 | 4.42e-31 | 119 |
| Msa0298120 | MtrunA17_Chr7g0242521 | 46.212 | 132 | 54 | 4 | 41 | 155 | 9 | 140 | 2.37e-25 | 102 |
| Msa0298120 | MtrunA17_Chr1g0175071 | 35.333 | 150 | 83 | 1 | 33 | 168 | 165 | 314 | 3.58e-23 | 98.2 |
| Msa0298120 | MtrunA17_Chr2g0288601 | 64.000 | 50 | 18 | 0 | 46 | 95 | 72 | 121 | 1.08e-16 | 75.9 |
| Msa0298120 | MtrunA17_Chr7g0243081 | 64.000 | 50 | 18 | 0 | 46 | 95 | 72 | 121 | 1.22e-16 | 80.1 |
| Msa0298120 | MtrunA17_Chr1g0175081 | 51.786 | 56 | 27 | 0 | 41 | 96 | 18 | 73 | 5.29e-16 | 73.2 |
| Msa0298120 | MtrunA17_Chr7g0258531 | 34.375 | 128 | 64 | 2 | 44 | 153 | 212 | 337 | 1.87e-15 | 76.6 |
| Msa0298120 | MtrunA17_Chr2g0320231 | 53.030 | 66 | 29 | 1 | 30 | 95 | 84 | 147 | 4.61e-15 | 75.5 |
| Msa0298120 | MtrunA17_Chr8g0379121 | 60.000 | 50 | 20 | 0 | 46 | 95 | 112 | 161 | 1.03e-14 | 74.7 |
| Msa0298120 | MtrunA17_Chr1g0210911 | 62.000 | 50 | 19 | 0 | 46 | 95 | 23 | 72 | 1.27e-14 | 73.9 |
| Msa0298120 | MtrunA17_Chr1g0162931 | 60.000 | 50 | 20 | 0 | 46 | 95 | 19 | 68 | 1.99e-14 | 72.8 |
| Msa0298120 | MtrunA17_Chr3g0095611 | 52.941 | 51 | 24 | 0 | 45 | 95 | 19 | 69 | 3.14e-14 | 70.9 |
| Msa0298120 | MtrunA17_Chr4g0009901 | 41.000 | 100 | 57 | 2 | 32 | 130 | 154 | 252 | 4.94e-14 | 71.6 |
| Msa0298120 | MtrunA17_Chr2g0283951 | 36.893 | 103 | 49 | 2 | 46 | 143 | 90 | 181 | 8.17e-14 | 72.0 |
| Msa0298120 | MtrunA17_Chr5g0410741 | 60.000 | 50 | 20 | 0 | 46 | 95 | 220 | 269 | 2.16e-13 | 70.9 |
| Msa0298120 | MtrunA17_Chr6g0479431 | 58.000 | 50 | 21 | 0 | 46 | 95 | 203 | 252 | 3.37e-13 | 70.1 |
| Msa0298120 | MtrunA17_Chr3g0109981 | 60.000 | 50 | 20 | 0 | 46 | 95 | 275 | 324 | 3.49e-13 | 70.5 |
| Msa0298120 | MtrunA17_Chr4g0009981 | 51.724 | 58 | 27 | 1 | 45 | 102 | 116 | 172 | 1.39e-12 | 67.0 |
| Msa0298120 | MtrunA17_Chr1g0154261 | 56.000 | 50 | 22 | 0 | 46 | 95 | 127 | 176 | 1.62e-12 | 67.4 |
| Msa0298120 | MtrunA17_Chr8g0366281 | 58.000 | 50 | 21 | 0 | 46 | 95 | 174 | 223 | 1.83e-12 | 67.8 |
| Msa0298120 | MtrunA17_Chr4g0009991 | 54.902 | 51 | 22 | 1 | 45 | 95 | 67 | 116 | 5.87e-12 | 62.4 |
| Msa0298120 | MtrunA17_Chr2g0294911 | 50.000 | 62 | 30 | 1 | 41 | 102 | 207 | 267 | 6.58e-12 | 66.6 |
| Msa0298120 | MtrunA17_Chr4g0067981 | 50.000 | 62 | 30 | 1 | 41 | 102 | 211 | 271 | 2.56e-11 | 65.1 |
| Msa0298120 | MtrunA17_Chr1g0161431 | 46.875 | 64 | 29 | 2 | 41 | 104 | 196 | 254 | 3.25e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298120 | AT3G04030.3 | 51.358 | 405 | 131 | 11 | 2 | 353 | 3 | 394 | 2.21e-114 | 338 |
| Msa0298120 | AT3G04030.2 | 50.864 | 405 | 132 | 12 | 2 | 353 | 3 | 393 | 3.56e-111 | 330 |
| Msa0298120 | AT5G18240.1 | 49.758 | 414 | 132 | 14 | 2 | 353 | 3 | 402 | 1.85e-109 | 325 |
| Msa0298120 | AT5G18240.4 | 49.758 | 414 | 132 | 14 | 2 | 353 | 3 | 402 | 1.85e-109 | 325 |
| Msa0298120 | AT3G04030.1 | 49.877 | 405 | 131 | 12 | 2 | 353 | 3 | 388 | 4.23e-107 | 319 |
| Msa0298120 | AT5G18240.5 | 49.275 | 414 | 132 | 15 | 2 | 353 | 3 | 400 | 4.28e-106 | 317 |
| Msa0298120 | AT5G18240.2 | 48.309 | 414 | 132 | 15 | 2 | 353 | 3 | 396 | 3.19e-102 | 307 |
| Msa0298120 | AT5G18240.3 | 48.309 | 414 | 132 | 15 | 2 | 353 | 3 | 396 | 3.19e-102 | 307 |
| Msa0298120 | AT3G04030.5 | 44.848 | 330 | 117 | 10 | 77 | 353 | 1 | 318 | 1.54e-67 | 215 |
| Msa0298120 | AT3G04030.4 | 43.030 | 330 | 117 | 11 | 77 | 353 | 1 | 312 | 2.38e-60 | 196 |
| Msa0298120 | AT1G69580.1 | 50.490 | 204 | 69 | 2 | 31 | 202 | 20 | 223 | 1.48e-55 | 185 |
| Msa0298120 | AT1G69580.2 | 50.244 | 205 | 69 | 2 | 31 | 202 | 20 | 224 | 4.01e-55 | 184 |
| Msa0298120 | AT5G18240.6 | 41.593 | 339 | 117 | 14 | 77 | 353 | 1 | 320 | 5.31e-55 | 183 |
| Msa0298120 | AT4G13640.1 | 42.336 | 274 | 109 | 6 | 11 | 238 | 1 | 271 | 1.58e-54 | 181 |
| Msa0298120 | AT4G13640.2 | 41.877 | 277 | 109 | 7 | 11 | 238 | 1 | 274 | 2.32e-52 | 175 |
| Msa0298120 | AT3G24120.1 | 49.246 | 199 | 70 | 2 | 19 | 188 | 15 | 211 | 3.13e-51 | 172 |
| Msa0298120 | AT3G24120.2 | 48.515 | 202 | 70 | 3 | 19 | 188 | 15 | 214 | 3.97e-49 | 167 |
| Msa0298120 | AT1G79430.2 | 56.579 | 152 | 48 | 3 | 35 | 168 | 24 | 175 | 3.90e-48 | 166 |
| Msa0298120 | AT5G45580.2 | 43.523 | 193 | 60 | 5 | 30 | 183 | 8 | 190 | 1.24e-40 | 144 |
| Msa0298120 | AT5G45580.1 | 44.022 | 184 | 54 | 5 | 39 | 183 | 1 | 174 | 6.20e-39 | 139 |
| Msa0298120 | AT3G12730.1 | 45.223 | 157 | 53 | 3 | 34 | 162 | 12 | 163 | 3.66e-38 | 136 |
| Msa0298120 | AT2G01060.1 | 47.651 | 149 | 57 | 4 | 44 | 172 | 14 | 161 | 1.71e-36 | 134 |
| Msa0298120 | AT4G28610.1 | 40.000 | 190 | 91 | 4 | 44 | 215 | 224 | 408 | 1.20e-34 | 131 |
| Msa0298120 | AT3G04450.4 | 46.763 | 139 | 56 | 2 | 41 | 161 | 194 | 332 | 1.43e-34 | 131 |
| Msa0298120 | AT3G04450.2 | 46.763 | 139 | 56 | 2 | 41 | 161 | 194 | 332 | 1.43e-34 | 131 |
| Msa0298120 | AT3G04450.1 | 46.763 | 139 | 56 | 2 | 41 | 161 | 234 | 372 | 2.60e-34 | 131 |
| Msa0298120 | AT5G29000.1 | 47.445 | 137 | 52 | 2 | 44 | 161 | 187 | 322 | 4.60e-34 | 129 |
| Msa0298120 | AT5G29000.3 | 47.445 | 137 | 52 | 2 | 44 | 161 | 187 | 322 | 4.60e-34 | 129 |
| Msa0298120 | AT5G29000.2 | 47.445 | 137 | 52 | 2 | 44 | 161 | 230 | 365 | 7.93e-34 | 129 |
| Msa0298120 | AT5G06800.1 | 47.368 | 133 | 52 | 2 | 45 | 161 | 192 | 322 | 1.25e-30 | 120 |
| Msa0298120 | AT5G06800.2 | 45.652 | 138 | 52 | 2 | 45 | 161 | 192 | 327 | 7.73e-30 | 118 |
| Msa0298120 | AT3G13040.3 | 45.390 | 141 | 56 | 3 | 45 | 165 | 241 | 380 | 2.36e-28 | 115 |
| Msa0298120 | AT3G13040.1 | 45.390 | 141 | 56 | 3 | 45 | 165 | 241 | 380 | 2.36e-28 | 115 |
| Msa0298120 | AT3G13040.2 | 45.390 | 141 | 56 | 3 | 45 | 165 | 241 | 380 | 2.36e-28 | 115 |
| Msa0298120 | AT2G20400.1 | 42.657 | 143 | 60 | 3 | 47 | 174 | 233 | 368 | 3.29e-26 | 108 |
| Msa0298120 | AT2G20400.2 | 42.361 | 144 | 60 | 3 | 47 | 174 | 233 | 369 | 3.40e-26 | 108 |
| Msa0298120 | AT1G79430.1 | 50.000 | 110 | 37 | 3 | 77 | 168 | 1 | 110 | 1.46e-22 | 96.3 |
| Msa0298120 | AT2G01060.2 | 44.248 | 113 | 42 | 4 | 80 | 172 | 1 | 112 | 3.98e-19 | 85.9 |
| Msa0298120 | AT3G04450.3 | 58.333 | 60 | 25 | 0 | 41 | 100 | 234 | 293 | 1.50e-18 | 85.5 |
| Msa0298120 | AT5G29000.4 | 61.404 | 57 | 22 | 0 | 44 | 100 | 230 | 286 | 1.91e-18 | 85.1 |
| Msa0298120 | AT5G06800.3 | 61.538 | 52 | 20 | 0 | 45 | 96 | 192 | 243 | 4.33e-16 | 77.8 |
| Msa0298120 | AT2G38300.1 | 62.000 | 50 | 19 | 0 | 46 | 95 | 55 | 104 | 1.09e-15 | 77.4 |
| Msa0298120 | AT2G42660.1 | 60.000 | 50 | 20 | 0 | 46 | 95 | 51 | 100 | 1.16e-15 | 76.3 |
| Msa0298120 | AT2G06020.1 | 46.575 | 73 | 36 | 1 | 27 | 96 | 65 | 137 | 3.51e-15 | 75.5 |
| Msa0298120 | AT4G04605.1 | 60.000 | 50 | 20 | 0 | 46 | 95 | 15 | 64 | 3.79e-15 | 74.3 |
| Msa0298120 | AT1G14600.1 | 62.000 | 50 | 19 | 0 | 46 | 95 | 24 | 73 | 4.79e-15 | 74.7 |
| Msa0298120 | AT2G40260.1 | 60.000 | 50 | 20 | 0 | 46 | 95 | 83 | 132 | 6.55e-15 | 75.9 |
| Msa0298120 | AT2G02060.2 | 62.000 | 50 | 19 | 0 | 46 | 95 | 30 | 79 | 1.06e-14 | 73.6 |
| Msa0298120 | AT2G02060.1 | 62.000 | 50 | 19 | 0 | 46 | 95 | 30 | 79 | 1.06e-14 | 73.6 |
| Msa0298120 | AT3G12730.2 | 36.842 | 114 | 39 | 3 | 77 | 162 | 1 | 109 | 2.51e-14 | 70.9 |
| Msa0298120 | AT4G04580.1 | 35.714 | 98 | 62 | 1 | 46 | 143 | 15 | 111 | 2.87e-14 | 70.5 |
| Msa0298120 | AT5G42630.2 | 52.941 | 68 | 31 | 1 | 33 | 100 | 94 | 160 | 5.65e-14 | 70.9 |
| Msa0298120 | AT5G16560.1 | 60.000 | 50 | 20 | 0 | 46 | 95 | 220 | 269 | 1.11e-13 | 72.0 |
| Msa0298120 | AT1G32240.2 | 60.000 | 50 | 20 | 0 | 46 | 95 | 214 | 263 | 1.67e-13 | 71.2 |
| Msa0298120 | AT5G42630.1 | 55.556 | 63 | 27 | 1 | 33 | 95 | 94 | 155 | 1.67e-13 | 70.5 |
| Msa0298120 | AT1G32240.1 | 60.000 | 50 | 20 | 0 | 46 | 95 | 214 | 263 | 1.90e-13 | 71.2 |
| Msa0298120 | AT4G17695.1 | 58.000 | 50 | 21 | 0 | 46 | 95 | 165 | 214 | 6.80e-13 | 69.3 |
| Msa0298120 | AT5G45580.3 | 46.053 | 76 | 31 | 2 | 108 | 183 | 70 | 135 | 1.37e-11 | 63.9 |
| Msa0298120 | AT3G16857.3 | 50.000 | 58 | 28 | 1 | 45 | 102 | 167 | 223 | 4.50e-11 | 64.7 |
| Msa0298120 | AT3G16857.1 | 50.000 | 58 | 28 | 1 | 45 | 102 | 237 | 293 | 4.98e-11 | 64.3 |
| Msa0298120 | AT3G16857.2 | 50.000 | 58 | 28 | 1 | 45 | 102 | 237 | 293 | 5.00e-11 | 64.3 |
Find 66 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGTACTTCATTGTTTCTA+AGG | 0.272927 | 2_3:+52019724 | None:intergenic |
| TCATGAACTTAATTTGAATT+AGG | 0.280533 | 2_3:+52019334 | None:intergenic |
| ATCATTCAAAATGGAGGGTT+TGG | 0.282355 | 2_3:-52019834 | Msa0298120:CDS |
| ACACTTGGTAGACAGAATTT+AGG | 0.292229 | 2_3:-52020041 | Msa0298120:CDS |
| ATGCAAAACCTAGATTAAAA+TGG | 0.295286 | 2_3:-52021099 | Msa0298120:CDS |
| GCTGACTTTGATATCCCTTT+TGG | 0.310120 | 2_3:-52020413 | Msa0298120:CDS |
| GGAAATGGTTCTAGTGATTC+AGG | 0.325156 | 2_3:-52021139 | Msa0298120:CDS |
| TCTACTTTCACCTTTCATAT+AGG | 0.329543 | 2_3:-52021249 | Msa0298120:five_prime_UTR |
| GTTGAGAATCATTCAGATAT+TGG | 0.332253 | 2_3:-52019597 | Msa0298120:CDS |
| GAAACAATGAAGTACTAAAA+TGG | 0.336198 | 2_3:-52019719 | Msa0298120:CDS |
| CAATAACAACCATGTGTTCA+TGG | 0.338392 | 2_3:-52019793 | Msa0298120:CDS |
| TAAAATTGTATCAATATTAC+TGG | 0.341250 | 2_3:+52019362 | None:intergenic |
| AGCTATCTCCTTCATAATAA+TGG | 0.346698 | 2_3:+52019385 | None:intergenic |
| AGTTCATTGTTATTTCCTAA+TGG | 0.351037 | 2_3:+52019657 | None:intergenic |
| ATGACTCTTTAAATGATATA+AGG | 0.363326 | 2_3:+52020855 | None:intergenic |
| GAACAAGAGATCATTCAAAA+TGG | 0.367000 | 2_3:-52019843 | Msa0298120:CDS |
| TAGAACCATTTCCTGTTTGA+AGG | 0.369263 | 2_3:+52021149 | None:intergenic |
| GTAAACAACTTGATTTGAAT+AGG | 0.370306 | 2_3:-52019500 | Msa0298120:CDS |
| ATGAAACTCATGGGAATTCC+AGG | 0.370323 | 2_3:-52020883 | Msa0298120:CDS |
| ACAAAGGAACACTGCAAGAT+TGG | 0.379529 | 2_3:-52019565 | Msa0298120:CDS |
| TCATTTAAAGAGTCATCTTC+AGG | 0.380557 | 2_3:-52020848 | Msa0298120:intron |
| AGACAGAATTTAGGAATTGT+AGG | 0.386239 | 2_3:-52020032 | Msa0298120:CDS |
| ATGTTCCTTCAAACAGGAAA+TGG | 0.408546 | 2_3:-52021154 | Msa0298120:CDS |
| ATGTGTAAATCTCTACCAAA+AGG | 0.417002 | 2_3:+52020398 | None:intergenic |
| CTTTCTCAAGCACTGATTGA+AGG | 0.431720 | 2_3:+52020072 | None:intergenic |
| GGAAATTTGTCTATGACCAT+TGG | 0.433476 | 2_3:-52019621 | Msa0298120:CDS |
| GTAATCAACCATTATTATGA+AGG | 0.434551 | 2_3:-52019393 | Msa0298120:three_prime_UTR |
| AATGCTTGTTGAGCTTGTCT+TGG | 0.435876 | 2_3:+52021331 | None:intergenic |
| TTGATTTGAATAGGTTCAGT+TGG | 0.449179 | 2_3:-52019491 | Msa0298120:CDS |
| ATAAACCTTGCATGAAGATC+AGG | 0.452639 | 2_3:+52021073 | None:intergenic |
| CTGTCCATCGAGCCGTCGTT+TGG | 0.455742 | 2_3:+52019900 | None:intergenic |
| ATCGAGCCGTCGTTTGGTTG+AGG | 0.465457 | 2_3:+52019906 | None:intergenic |
| AGGCACATGTTCCTTCAAAC+AGG | 0.475299 | 2_3:-52021160 | Msa0298120:CDS |
| TACAAAGACACTTGCAGCTA+AGG | 0.482388 | 2_3:-52020115 | Msa0298120:CDS |
| ATAGAAGCAGTTAATCAGTT+AGG | 0.490373 | 2_3:-52021052 | Msa0298120:CDS |
| ATCGTCTGACCGATCACAAA+AGG | 0.496813 | 2_3:-52019865 | Msa0298120:CDS |
| GACAGAATTTAGGAATTGTA+GGG | 0.505297 | 2_3:-52020031 | Msa0298120:CDS |
| TCATGCAAGCTTGGTATATG+TGG | 0.525760 | 2_3:-52019305 | None:intergenic |
| GTCAGCATAAAATCTTAAAG+TGG | 0.533465 | 2_3:+52020430 | None:intergenic |
| TGTGTAAATCTCTACCAAAA+GGG | 0.534095 | 2_3:+52020399 | None:intergenic |
| CAAGAGATCATTCAAAATGG+AGG | 0.547960 | 2_3:-52019840 | Msa0298120:CDS |
| AAATGATATAAGGTAAGCCC+TGG | 0.549274 | 2_3:+52020865 | None:intergenic |
| TGAATGATATCATGCAAGCT+TGG | 0.553304 | 2_3:-52019314 | Msa0298120:three_prime_UTR |
| GGCGCTGCAAATGCAGATTG+AGG | 0.562019 | 2_3:-52020369 | Msa0298120:CDS |
| AAGAGATCATTCAAAATGGA+GGG | 0.567002 | 2_3:-52019839 | Msa0298120:CDS |
| TCAACCAAACGACGGCTCGA+TGG | 0.568429 | 2_3:-52019904 | Msa0298120:CDS |
| AGTCGTGGAGATAATAATGA+AGG | 0.569748 | 2_3:-52019534 | Msa0298120:CDS |
| CAACAAGCAACAGAATTAGC+AGG | 0.571604 | 2_3:-52019759 | Msa0298120:CDS |
| TCAGAGATGAAAGAGTTACA+AGG | 0.580642 | 2_3:-52019936 | Msa0298120:CDS |
| AAAACAGTAATGAAACTCAT+GGG | 0.594613 | 2_3:-52020892 | Msa0298120:CDS |
| AGGAACATGTGCCTCTCAGA+TGG | 0.596232 | 2_3:+52021169 | None:intergenic |
| AAGACTCAATGAACAACTTG+AGG | 0.597565 | 2_3:-52020339 | Msa0298120:intron |
| GAGAAAGCTCAAGAAACACT+TGG | 0.604326 | 2_3:-52020056 | Msa0298120:CDS |
| CAGCTAAGGATAGAAGCTCA+AGG | 0.609742 | 2_3:-52020101 | Msa0298120:CDS |
| TGAATGATTCTCAACTCCAA+TGG | 0.613522 | 2_3:+52019605 | None:intergenic |
| GATGATACATCCTATATGAA+AGG | 0.629487 | 2_3:+52021239 | None:intergenic |
| GGACACCTGATCTTCATGCA+AGG | 0.639163 | 2_3:-52021078 | Msa0298120:CDS |
| GAAGCAGTTAATCAGTTAGG+CGG | 0.649355 | 2_3:-52021049 | Msa0298120:CDS |
| AGATTGGATCTAAACAGTCG+TGG | 0.649789 | 2_3:-52019549 | Msa0298120:CDS |
| TGAAACTCATGGGAATTCCA+GGG | 0.657200 | 2_3:-52020882 | Msa0298120:CDS |
| TGTTGAATTCAGACACTGTG+AGG | 0.662262 | 2_3:+52019962 | None:intergenic |
| TAGAGATTTACACATAAGCG+AGG | 0.678252 | 2_3:-52020390 | Msa0298120:CDS |
| AGTTAATCAGTTAGGCGGAG+CGG | 0.682383 | 2_3:-52021044 | Msa0298120:CDS |
| AGTACTAAAATGGTGTGTTG+AGG | 0.684708 | 2_3:-52019709 | Msa0298120:CDS |
| GAATGTCAATACCATCTGAG+AGG | 0.692919 | 2_3:-52021180 | Msa0298120:CDS |
| ATATTGGTGAGTTTCAACAA+AGG | 0.741956 | 2_3:-52019581 | Msa0298120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTGTATCAATATTAC+TGG | + | chr2_3:52021278-52021297 | None:intergenic | 15.0% |
| !! | TAAAATTGTATCAATATTAC+TGG | + | chr2_3:52021278-52021297 | None:intergenic | 15.0% |
| !! | ATGACTCTTTAAATGATATA+AGG | + | chr2_3:52019785-52019804 | None:intergenic | 20.0% |
| !!! | TTTTTTTACCATACTTTGTA+TGG | - | chr2_3:52019830-52019849 | Msa0298120:CDS | 20.0% |
| !!! | TTCATGTAATCTTGTTTTAT+AGG | - | chr2_3:52020175-52020194 | Msa0298120:intron | 20.0% |
| !!! | TCATGAACTTAATTTGAATT+AGG | + | chr2_3:52021306-52021325 | None:intergenic | 20.0% |
| !! | ATGACTCTTTAAATGATATA+AGG | + | chr2_3:52019785-52019804 | None:intergenic | 20.0% |
| !!! | TTTTTTTACCATACTTTGTA+TGG | - | chr2_3:52019830-52019849 | Msa0298120:CDS | 20.0% |
| !!! | TTCATGTAATCTTGTTTTAT+AGG | - | chr2_3:52020175-52020194 | Msa0298120:intron | 20.0% |
| !!! | TCATGAACTTAATTTGAATT+AGG | + | chr2_3:52021306-52021325 | None:intergenic | 20.0% |
| !!! | CTTGTTTTGAAGTATTTTTG+TGG | + | chr2_3:52019362-52019381 | None:intergenic | 25.0% |
| ! | CACAAAAATACTTCAAAACA+AGG | - | chr2_3:52019360-52019379 | Msa0298120:three_prime_UTR | 25.0% |
| ! | ATGCAAAACCTAGATTAAAA+TGG | - | chr2_3:52019538-52019557 | Msa0298120:CDS | 25.0% |
| !! | ATTACAAACTCATTCTCTTT+TGG | - | chr2_3:52019635-52019654 | Msa0298120:CDS | 25.0% |
| !! | ATGAGTTTCATTACTGTTTT+TGG | + | chr2_3:52019745-52019764 | None:intergenic | 25.0% |
| ! | AAAAACAGTAATGAAACTCA+TGG | - | chr2_3:52019744-52019763 | Msa0298120:CDS | 25.0% |
| ! | AAAACAGTAATGAAACTCAT+GGG | - | chr2_3:52019745-52019764 | Msa0298120:CDS | 25.0% |
| !! | CATGAAGAGTGTAATTAAAA+GGG | + | chr2_3:52020161-52020180 | None:intergenic | 25.0% |
| !! | ACATGAAGAGTGTAATTAAA+AGG | + | chr2_3:52020162-52020181 | None:intergenic | 25.0% |
| ! | ATGTTAGATCTTAGTATCAT+TGG | - | chr2_3:52020394-52020413 | Msa0298120:CDS | 25.0% |
| !!! | TTAGTACTTCATTGTTTCTA+AGG | + | chr2_3:52020916-52020935 | None:intergenic | 25.0% |
| !! | GAAACAATGAAGTACTAAAA+TGG | - | chr2_3:52020918-52020937 | Msa0298120:intron | 25.0% |
| !!! | AGTTCATTGTTATTTCCTAA+TGG | + | chr2_3:52020983-52021002 | None:intergenic | 25.0% |
| ! | AATGAACTAGAAAAAAGTCA+TGG | - | chr2_3:52020995-52021014 | Msa0298120:intron | 25.0% |
| !! | GTAAACAACTTGATTTGAAT+AGG | - | chr2_3:52021137-52021156 | Msa0298120:CDS | 25.0% |
| ! | GTAATCAACCATTATTATGA+AGG | - | chr2_3:52021244-52021263 | Msa0298120:exon | 25.0% |
| !!! | CTTGTTTTGAAGTATTTTTG+TGG | + | chr2_3:52019362-52019381 | None:intergenic | 25.0% |
| ! | CACAAAAATACTTCAAAACA+AGG | - | chr2_3:52019360-52019379 | Msa0298120:three_prime_UTR | 25.0% |
| ! | ATGCAAAACCTAGATTAAAA+TGG | - | chr2_3:52019538-52019557 | Msa0298120:CDS | 25.0% |
| !! | ATTACAAACTCATTCTCTTT+TGG | - | chr2_3:52019635-52019654 | Msa0298120:CDS | 25.0% |
| !! | ATGAGTTTCATTACTGTTTT+TGG | + | chr2_3:52019745-52019764 | None:intergenic | 25.0% |
| ! | AAAAACAGTAATGAAACTCA+TGG | - | chr2_3:52019744-52019763 | Msa0298120:CDS | 25.0% |
| ! | AAAACAGTAATGAAACTCAT+GGG | - | chr2_3:52019745-52019764 | Msa0298120:CDS | 25.0% |
| !! | CATGAAGAGTGTAATTAAAA+GGG | + | chr2_3:52020161-52020180 | None:intergenic | 25.0% |
| !! | ACATGAAGAGTGTAATTAAA+AGG | + | chr2_3:52020162-52020181 | None:intergenic | 25.0% |
| ! | ATGTTAGATCTTAGTATCAT+TGG | - | chr2_3:52020394-52020413 | Msa0298120:CDS | 25.0% |
| !!! | TTAGTACTTCATTGTTTCTA+AGG | + | chr2_3:52020916-52020935 | None:intergenic | 25.0% |
| !! | GAAACAATGAAGTACTAAAA+TGG | - | chr2_3:52020918-52020937 | Msa0298120:intron | 25.0% |
| !!! | AGTTCATTGTTATTTCCTAA+TGG | + | chr2_3:52020983-52021002 | None:intergenic | 25.0% |
| ! | AATGAACTAGAAAAAAGTCA+TGG | - | chr2_3:52020995-52021014 | Msa0298120:intron | 25.0% |
| !! | GTAAACAACTTGATTTGAAT+AGG | - | chr2_3:52021137-52021156 | Msa0298120:CDS | 25.0% |
| ! | GTAATCAACCATTATTATGA+AGG | - | chr2_3:52021244-52021263 | Msa0298120:exon | 25.0% |
| TCTACTTTCACCTTTCATAT+AGG | - | chr2_3:52019388-52019407 | Msa0298120:three_prime_UTR | 30.0% | |
| GATGATACATCCTATATGAA+AGG | + | chr2_3:52019401-52019420 | None:intergenic | 30.0% | |
| ATGTATCATCATCATCATCA+AGG | - | chr2_3:52019411-52019430 | Msa0298120:three_prime_UTR | 30.0% | |
| ATAGAAGCAGTTAATCAGTT+AGG | - | chr2_3:52019585-52019604 | Msa0298120:CDS | 30.0% | |
| !! | AAACTCATTCTCTTTTGGTT+TGG | - | chr2_3:52019640-52019659 | Msa0298120:CDS | 30.0% |
| TCATTTAAAGAGTCATCTTC+AGG | - | chr2_3:52019789-52019808 | Msa0298120:CDS | 30.0% | |
| TAATTGCACCATACAAAGTA+TGG | + | chr2_3:52019841-52019860 | None:intergenic | 30.0% | |
| TTTATTCATGTGAGTTCCAT+TGG | + | chr2_3:52020088-52020107 | None:intergenic | 30.0% | |
| CACATGAATAAATTAACGCT+TGG | - | chr2_3:52020096-52020115 | Msa0298120:CDS | 30.0% | |
| ! | TTGTTGTTGTTATTAGTCTG+TGG | + | chr2_3:52020123-52020142 | None:intergenic | 30.0% |
| GTCAGCATAAAATCTTAAAG+TGG | + | chr2_3:52020210-52020229 | None:intergenic | 30.0% | |
| TGTGTAAATCTCTACCAAAA+GGG | + | chr2_3:52020241-52020260 | None:intergenic | 30.0% | |
| ATGTGTAAATCTCTACCAAA+AGG | + | chr2_3:52020242-52020261 | None:intergenic | 30.0% | |
| AGAAACAAAATTAACGCGTT+TGG | + | chr2_3:52020464-52020483 | None:intergenic | 30.0% | |
| AAACCAATATTCAAAACCTG+TGG | - | chr2_3:52020495-52020514 | Msa0298120:intron | 30.0% | |
| AGACAGAATTTAGGAATTGT+AGG | - | chr2_3:52020605-52020624 | Msa0298120:intron | 30.0% | |
| GACAGAATTTAGGAATTGTA+GGG | - | chr2_3:52020606-52020625 | Msa0298120:intron | 30.0% | |
| GAACAAGAGATCATTCAAAA+TGG | - | chr2_3:52020794-52020813 | Msa0298120:intron | 30.0% | |
| AAGAGATCATTCAAAATGGA+GGG | - | chr2_3:52020798-52020817 | Msa0298120:intron | 30.0% | |
| ! | AGTAATTTTCTCACTCCATT+AGG | - | chr2_3:52020965-52020984 | Msa0298120:intron | 30.0% |
| GTTGAGAATCATTCAGATAT+TGG | - | chr2_3:52021040-52021059 | Msa0298120:intron | 30.0% | |
| ATATTGGTGAGTTTCAACAA+AGG | - | chr2_3:52021056-52021075 | Msa0298120:CDS | 30.0% | |
| ! | TTGATTTGAATAGGTTCAGT+TGG | - | chr2_3:52021146-52021165 | Msa0298120:CDS | 30.0% |
| AGCTATCTCCTTCATAATAA+TGG | + | chr2_3:52021255-52021274 | None:intergenic | 30.0% | |
| TCTACTTTCACCTTTCATAT+AGG | - | chr2_3:52019388-52019407 | Msa0298120:three_prime_UTR | 30.0% | |
| GATGATACATCCTATATGAA+AGG | + | chr2_3:52019401-52019420 | None:intergenic | 30.0% | |
| ATGTATCATCATCATCATCA+AGG | - | chr2_3:52019411-52019430 | Msa0298120:three_prime_UTR | 30.0% | |
| ATAGAAGCAGTTAATCAGTT+AGG | - | chr2_3:52019585-52019604 | Msa0298120:CDS | 30.0% | |
| !! | AAACTCATTCTCTTTTGGTT+TGG | - | chr2_3:52019640-52019659 | Msa0298120:CDS | 30.0% |
| TCATTTAAAGAGTCATCTTC+AGG | - | chr2_3:52019789-52019808 | Msa0298120:CDS | 30.0% | |
| TAATTGCACCATACAAAGTA+TGG | + | chr2_3:52019841-52019860 | None:intergenic | 30.0% | |
| TTTATTCATGTGAGTTCCAT+TGG | + | chr2_3:52020088-52020107 | None:intergenic | 30.0% | |
| CACATGAATAAATTAACGCT+TGG | - | chr2_3:52020096-52020115 | Msa0298120:CDS | 30.0% | |
| ! | TTGTTGTTGTTATTAGTCTG+TGG | + | chr2_3:52020123-52020142 | None:intergenic | 30.0% |
| GTCAGCATAAAATCTTAAAG+TGG | + | chr2_3:52020210-52020229 | None:intergenic | 30.0% | |
| TGTGTAAATCTCTACCAAAA+GGG | + | chr2_3:52020241-52020260 | None:intergenic | 30.0% | |
| ATGTGTAAATCTCTACCAAA+AGG | + | chr2_3:52020242-52020261 | None:intergenic | 30.0% | |
| AGAAACAAAATTAACGCGTT+TGG | + | chr2_3:52020464-52020483 | None:intergenic | 30.0% | |
| AAACCAATATTCAAAACCTG+TGG | - | chr2_3:52020495-52020514 | Msa0298120:intron | 30.0% | |
| AGACAGAATTTAGGAATTGT+AGG | - | chr2_3:52020605-52020624 | Msa0298120:intron | 30.0% | |
| GACAGAATTTAGGAATTGTA+GGG | - | chr2_3:52020606-52020625 | Msa0298120:intron | 30.0% | |
| GAACAAGAGATCATTCAAAA+TGG | - | chr2_3:52020794-52020813 | Msa0298120:intron | 30.0% | |
| AAGAGATCATTCAAAATGGA+GGG | - | chr2_3:52020798-52020817 | Msa0298120:intron | 30.0% | |
| ! | AGTAATTTTCTCACTCCATT+AGG | - | chr2_3:52020965-52020984 | Msa0298120:intron | 30.0% |
| GTTGAGAATCATTCAGATAT+TGG | - | chr2_3:52021040-52021059 | Msa0298120:intron | 30.0% | |
| ATATTGGTGAGTTTCAACAA+AGG | - | chr2_3:52021056-52021075 | Msa0298120:CDS | 30.0% | |
| ! | TTGATTTGAATAGGTTCAGT+TGG | - | chr2_3:52021146-52021165 | Msa0298120:CDS | 30.0% |
| AGCTATCTCCTTCATAATAA+TGG | + | chr2_3:52021255-52021274 | None:intergenic | 30.0% | |
| ATGTTCCTTCAAACAGGAAA+TGG | - | chr2_3:52019483-52019502 | Msa0298120:exon | 35.0% | |
| TAGAACCATTTCCTGTTTGA+AGG | + | chr2_3:52019491-52019510 | None:intergenic | 35.0% | |
| !! | TCAGGTGTCCATTTTAATCT+AGG | + | chr2_3:52019549-52019568 | None:intergenic | 35.0% |
| ATAAACCTTGCATGAAGATC+AGG | + | chr2_3:52019567-52019586 | None:intergenic | 35.0% | |
| TTACCATCTTTCTATTGCAG+AGG | - | chr2_3:52019714-52019733 | Msa0298120:CDS | 35.0% | |
| AAATGATATAAGGTAAGCCC+TGG | + | chr2_3:52019775-52019794 | None:intergenic | 35.0% | |
| TCTTGCTTAATCTGTACTTC+TGG | + | chr2_3:52019888-52019907 | None:intergenic | 35.0% | |
| AGATTAAGCAAGAATCTGCA+TGG | - | chr2_3:52019895-52019914 | Msa0298120:CDS | 35.0% | |
| TAGAGATTTACACATAAGCG+AGG | - | chr2_3:52020247-52020266 | Msa0298120:intron | 35.0% | |
| AAGACTCAATGAACAACTTG+AGG | - | chr2_3:52020298-52020317 | Msa0298120:intron | 35.0% | |
| ACACTTGGTAGACAGAATTT+AGG | - | chr2_3:52020596-52020615 | Msa0298120:intron | 35.0% | |
| TCAGAGATGAAAGAGTTACA+AGG | - | chr2_3:52020701-52020720 | Msa0298120:intron | 35.0% | |
| ! | TCTCTTGTTCCTTTTGTGAT+CGG | + | chr2_3:52020784-52020803 | None:intergenic | 35.0% |
| CAAGAGATCATTCAAAATGG+AGG | - | chr2_3:52020797-52020816 | Msa0298120:intron | 35.0% | |
| ATCATTCAAAATGGAGGGTT+TGG | - | chr2_3:52020803-52020822 | Msa0298120:intron | 35.0% | |
| CAATAACAACCATGTGTTCA+TGG | - | chr2_3:52020844-52020863 | Msa0298120:intron | 35.0% | |
| ! | CTTTTCTTTCCATGAACACA+TGG | + | chr2_3:52020856-52020875 | None:intergenic | 35.0% |
| AGTACTAAAATGGTGTGTTG+AGG | - | chr2_3:52020928-52020947 | Msa0298120:intron | 35.0% | |
| GGAAATTTGTCTATGACCAT+TGG | - | chr2_3:52021016-52021035 | Msa0298120:intron | 35.0% | |
| TGAATGATTCTCAACTCCAA+TGG | + | chr2_3:52021035-52021054 | None:intergenic | 35.0% | |
| AGTCGTGGAGATAATAATGA+AGG | - | chr2_3:52021103-52021122 | Msa0298120:CDS | 35.0% | |
| TGAATGATATCATGCAAGCT+TGG | - | chr2_3:52021323-52021342 | Msa0298120:five_prime_UTR | 35.0% | |
| ATGTTCCTTCAAACAGGAAA+TGG | - | chr2_3:52019483-52019502 | Msa0298120:exon | 35.0% | |
| TAGAACCATTTCCTGTTTGA+AGG | + | chr2_3:52019491-52019510 | None:intergenic | 35.0% | |
| !! | TCAGGTGTCCATTTTAATCT+AGG | + | chr2_3:52019549-52019568 | None:intergenic | 35.0% |
| ATAAACCTTGCATGAAGATC+AGG | + | chr2_3:52019567-52019586 | None:intergenic | 35.0% | |
| TTACCATCTTTCTATTGCAG+AGG | - | chr2_3:52019714-52019733 | Msa0298120:CDS | 35.0% | |
| AAATGATATAAGGTAAGCCC+TGG | + | chr2_3:52019775-52019794 | None:intergenic | 35.0% | |
| TCTTGCTTAATCTGTACTTC+TGG | + | chr2_3:52019888-52019907 | None:intergenic | 35.0% | |
| AGATTAAGCAAGAATCTGCA+TGG | - | chr2_3:52019895-52019914 | Msa0298120:CDS | 35.0% | |
| TAGAGATTTACACATAAGCG+AGG | - | chr2_3:52020247-52020266 | Msa0298120:intron | 35.0% | |
| AAGACTCAATGAACAACTTG+AGG | - | chr2_3:52020298-52020317 | Msa0298120:intron | 35.0% | |
| ACACTTGGTAGACAGAATTT+AGG | - | chr2_3:52020596-52020615 | Msa0298120:intron | 35.0% | |
| TCAGAGATGAAAGAGTTACA+AGG | - | chr2_3:52020701-52020720 | Msa0298120:intron | 35.0% | |
| ! | TCTCTTGTTCCTTTTGTGAT+CGG | + | chr2_3:52020784-52020803 | None:intergenic | 35.0% |
| CAAGAGATCATTCAAAATGG+AGG | - | chr2_3:52020797-52020816 | Msa0298120:intron | 35.0% | |
| ATCATTCAAAATGGAGGGTT+TGG | - | chr2_3:52020803-52020822 | Msa0298120:intron | 35.0% | |
| CAATAACAACCATGTGTTCA+TGG | - | chr2_3:52020844-52020863 | Msa0298120:intron | 35.0% | |
| ! | CTTTTCTTTCCATGAACACA+TGG | + | chr2_3:52020856-52020875 | None:intergenic | 35.0% |
| AGTACTAAAATGGTGTGTTG+AGG | - | chr2_3:52020928-52020947 | Msa0298120:intron | 35.0% | |
| GGAAATTTGTCTATGACCAT+TGG | - | chr2_3:52021016-52021035 | Msa0298120:intron | 35.0% | |
| TGAATGATTCTCAACTCCAA+TGG | + | chr2_3:52021035-52021054 | None:intergenic | 35.0% | |
| AGTCGTGGAGATAATAATGA+AGG | - | chr2_3:52021103-52021122 | Msa0298120:CDS | 35.0% | |
| TGAATGATATCATGCAAGCT+TGG | - | chr2_3:52021323-52021342 | Msa0298120:five_prime_UTR | 35.0% | |
| ! | AATGCTTGTTGAGCTTGTCT+TGG | + | chr2_3:52019309-52019328 | None:intergenic | 40.0% |
| GAATGTCAATACCATCTGAG+AGG | - | chr2_3:52019457-52019476 | Msa0298120:three_prime_UTR | 40.0% | |
| !! | GGAAATGGTTCTAGTGATTC+AGG | - | chr2_3:52019498-52019517 | Msa0298120:CDS | 40.0% |
| GAAGCAGTTAATCAGTTAGG+CGG | - | chr2_3:52019588-52019607 | Msa0298120:CDS | 40.0% | |
| TCTATGTTACTCGAGATTCG+AGG | + | chr2_3:52019668-52019687 | None:intergenic | 40.0% | |
| TTGCCTCTGCAATAGAAAGA+TGG | + | chr2_3:52019720-52019739 | None:intergenic | 40.0% | |
| ATGAAACTCATGGGAATTCC+AGG | - | chr2_3:52019754-52019773 | Msa0298120:CDS | 40.0% | |
| TGAAACTCATGGGAATTCCA+GGG | - | chr2_3:52019755-52019774 | Msa0298120:CDS | 40.0% | |
| ! | CTGTACTTCTGGTGATGAAA+AGG | + | chr2_3:52019877-52019896 | None:intergenic | 40.0% |
| !! | GAGAGACTTTCTGAAACCAA+TGG | - | chr2_3:52020069-52020088 | Msa0298120:CDS | 40.0% |
| !! | GCTGACTTTGATATCCCTTT+TGG | - | chr2_3:52020224-52020243 | Msa0298120:intron | 40.0% |
| ! | GAACAACTTGAGGTGAGTTT+TGG | - | chr2_3:52020308-52020327 | Msa0298120:intron | 40.0% |
| !!! | CTGCCACAGGTTTTGAATAT+TGG | + | chr2_3:52020501-52020520 | None:intergenic | 40.0% |
| CAATATTCAAAACCTGTGGC+AGG | - | chr2_3:52020499-52020518 | Msa0298120:intron | 40.0% | |
| TACAAAGACACTTGCAGCTA+AGG | - | chr2_3:52020522-52020541 | Msa0298120:intron | 40.0% | |
| !! | CTTTCTCAAGCACTGATTGA+AGG | + | chr2_3:52020568-52020587 | None:intergenic | 40.0% |
| GAGAAAGCTCAAGAAACACT+TGG | - | chr2_3:52020581-52020600 | Msa0298120:intron | 40.0% | |
| TGTTGAATTCAGACACTGTG+AGG | + | chr2_3:52020678-52020697 | None:intergenic | 40.0% | |
| ! | TTTTGTCCTCAACCAAACGA+CGG | - | chr2_3:52020725-52020744 | Msa0298120:intron | 40.0% |
| CAACAAGCAACAGAATTAGC+AGG | - | chr2_3:52020878-52020897 | Msa0298120:CDS | 40.0% | |
| ACAAAGGAACACTGCAAGAT+TGG | - | chr2_3:52021072-52021091 | Msa0298120:CDS | 40.0% | |
| AGATTGGATCTAAACAGTCG+TGG | - | chr2_3:52021088-52021107 | Msa0298120:CDS | 40.0% | |
| ! | AATGCTTGTTGAGCTTGTCT+TGG | + | chr2_3:52019309-52019328 | None:intergenic | 40.0% |
| GAATGTCAATACCATCTGAG+AGG | - | chr2_3:52019457-52019476 | Msa0298120:three_prime_UTR | 40.0% | |
| !! | GGAAATGGTTCTAGTGATTC+AGG | - | chr2_3:52019498-52019517 | Msa0298120:CDS | 40.0% |
| GAAGCAGTTAATCAGTTAGG+CGG | - | chr2_3:52019588-52019607 | Msa0298120:CDS | 40.0% | |
| TCTATGTTACTCGAGATTCG+AGG | + | chr2_3:52019668-52019687 | None:intergenic | 40.0% | |
| TTGCCTCTGCAATAGAAAGA+TGG | + | chr2_3:52019720-52019739 | None:intergenic | 40.0% | |
| ATGAAACTCATGGGAATTCC+AGG | - | chr2_3:52019754-52019773 | Msa0298120:CDS | 40.0% | |
| TGAAACTCATGGGAATTCCA+GGG | - | chr2_3:52019755-52019774 | Msa0298120:CDS | 40.0% | |
| ! | CTGTACTTCTGGTGATGAAA+AGG | + | chr2_3:52019877-52019896 | None:intergenic | 40.0% |
| !! | GAGAGACTTTCTGAAACCAA+TGG | - | chr2_3:52020069-52020088 | Msa0298120:CDS | 40.0% |
| !! | GCTGACTTTGATATCCCTTT+TGG | - | chr2_3:52020224-52020243 | Msa0298120:intron | 40.0% |
| ! | GAACAACTTGAGGTGAGTTT+TGG | - | chr2_3:52020308-52020327 | Msa0298120:intron | 40.0% |
| !!! | CTGCCACAGGTTTTGAATAT+TGG | + | chr2_3:52020501-52020520 | None:intergenic | 40.0% |
| CAATATTCAAAACCTGTGGC+AGG | - | chr2_3:52020499-52020518 | Msa0298120:intron | 40.0% | |
| TACAAAGACACTTGCAGCTA+AGG | - | chr2_3:52020522-52020541 | Msa0298120:intron | 40.0% | |
| !! | CTTTCTCAAGCACTGATTGA+AGG | + | chr2_3:52020568-52020587 | None:intergenic | 40.0% |
| GAGAAAGCTCAAGAAACACT+TGG | - | chr2_3:52020581-52020600 | Msa0298120:intron | 40.0% | |
| TGTTGAATTCAGACACTGTG+AGG | + | chr2_3:52020678-52020697 | None:intergenic | 40.0% | |
| ! | TTTTGTCCTCAACCAAACGA+CGG | - | chr2_3:52020725-52020744 | Msa0298120:intron | 40.0% |
| CAACAAGCAACAGAATTAGC+AGG | - | chr2_3:52020878-52020897 | Msa0298120:CDS | 40.0% | |
| ACAAAGGAACACTGCAAGAT+TGG | - | chr2_3:52021072-52021091 | Msa0298120:CDS | 40.0% | |
| AGATTGGATCTAAACAGTCG+TGG | - | chr2_3:52021088-52021107 | Msa0298120:CDS | 40.0% | |
| AGGCACATGTTCCTTCAAAC+AGG | - | chr2_3:52019477-52019496 | Msa0298120:exon | 45.0% | |
| AGTTAATCAGTTAGGCGGAG+CGG | - | chr2_3:52019593-52019612 | Msa0298120:CDS | 45.0% | |
| CAGCTAAGGATAGAAGCTCA+AGG | - | chr2_3:52020536-52020555 | Msa0298120:intron | 45.0% | |
| ATCGTCTGACCGATCACAAA+AGG | - | chr2_3:52020772-52020791 | Msa0298120:intron | 45.0% | |
| AGGCACATGTTCCTTCAAAC+AGG | - | chr2_3:52019477-52019496 | Msa0298120:exon | 45.0% | |
| AGTTAATCAGTTAGGCGGAG+CGG | - | chr2_3:52019593-52019612 | Msa0298120:CDS | 45.0% | |
| CAGCTAAGGATAGAAGCTCA+AGG | - | chr2_3:52020536-52020555 | Msa0298120:intron | 45.0% | |
| ATCGTCTGACCGATCACAAA+AGG | - | chr2_3:52020772-52020791 | Msa0298120:intron | 45.0% | |
| AGGAACATGTGCCTCTCAGA+TGG | + | chr2_3:52019471-52019490 | None:intergenic | 50.0% | |
| GGACACCTGATCTTCATGCA+AGG | - | chr2_3:52019559-52019578 | Msa0298120:CDS | 50.0% | |
| CGCGTTTGGATTCTCTGCAA+GGG | + | chr2_3:52020450-52020469 | None:intergenic | 50.0% | |
| ACGCGTTTGGATTCTCTGCA+AGG | + | chr2_3:52020451-52020470 | None:intergenic | 50.0% | |
| AGTGTCTTTGTACCTGCCAC+AGG | + | chr2_3:52020514-52020533 | None:intergenic | 50.0% | |
| AGGAACATGTGCCTCTCAGA+TGG | + | chr2_3:52019471-52019490 | None:intergenic | 50.0% | |
| GGACACCTGATCTTCATGCA+AGG | - | chr2_3:52019559-52019578 | Msa0298120:CDS | 50.0% | |
| CGCGTTTGGATTCTCTGCAA+GGG | + | chr2_3:52020450-52020469 | None:intergenic | 50.0% | |
| ACGCGTTTGGATTCTCTGCA+AGG | + | chr2_3:52020451-52020470 | None:intergenic | 50.0% | |
| AGTGTCTTTGTACCTGCCAC+AGG | + | chr2_3:52020514-52020533 | None:intergenic | 50.0% | |
| GGCGCTGCAAATGCAGATTG+AGG | - | chr2_3:52020268-52020287 | Msa0298120:intron | 55.0% | |
| TCTCTGCAAGGGCTGCAGAA+CGG | + | chr2_3:52020439-52020458 | None:intergenic | 55.0% | |
| ATCGAGCCGTCGTTTGGTTG+AGG | + | chr2_3:52020734-52020753 | None:intergenic | 55.0% | |
| TCAACCAAACGACGGCTCGA+TGG | - | chr2_3:52020733-52020752 | Msa0298120:intron | 55.0% | |
| GGCGCTGCAAATGCAGATTG+AGG | - | chr2_3:52020268-52020287 | Msa0298120:intron | 55.0% | |
| TCTCTGCAAGGGCTGCAGAA+CGG | + | chr2_3:52020439-52020458 | None:intergenic | 55.0% | |
| ATCGAGCCGTCGTTTGGTTG+AGG | + | chr2_3:52020734-52020753 | None:intergenic | 55.0% | |
| TCAACCAAACGACGGCTCGA+TGG | - | chr2_3:52020733-52020752 | Msa0298120:intron | 55.0% | |
| CTGTCCATCGAGCCGTCGTT+TGG | + | chr2_3:52020740-52020759 | None:intergenic | 60.0% | |
| CTGTCCATCGAGCCGTCGTT+TGG | + | chr2_3:52020740-52020759 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 52019306 | 52021353 | 52019306 | ID=Msa0298120;Name=Msa0298120 |
| chr2_3 | mRNA | 52019306 | 52021353 | 52019306 | ID=Msa0298120-mRNA-1;Parent=Msa0298120;Name=Msa0298120-mRNA-1;_AED=0.16;_eAED=0.16;_QI=105|0.66|0.75|1|1|1|4|179|353 |
| chr2_3 | exon | 52019306 | 52020138 | 52019306 | ID=Msa0298120-mRNA-1:exon:16591;Parent=Msa0298120-mRNA-1 |
| chr2_3 | exon | 52020340 | 52020462 | 52020340 | ID=Msa0298120-mRNA-1:exon:16590;Parent=Msa0298120-mRNA-1 |
| chr2_3 | exon | 52020849 | 52020925 | 52020849 | ID=Msa0298120-mRNA-1:exon:16589;Parent=Msa0298120-mRNA-1 |
| chr2_3 | exon | 52021041 | 52021353 | 52021041 | ID=Msa0298120-mRNA-1:exon:16588;Parent=Msa0298120-mRNA-1 |
| chr2_3 | five_prime_UTR | 52021249 | 52021353 | 52021249 | ID=Msa0298120-mRNA-1:five_prime_utr;Parent=Msa0298120-mRNA-1 |
| chr2_3 | CDS | 52021041 | 52021248 | 52021041 | ID=Msa0298120-mRNA-1:cds;Parent=Msa0298120-mRNA-1 |
| chr2_3 | CDS | 52020849 | 52020925 | 52020849 | ID=Msa0298120-mRNA-1:cds;Parent=Msa0298120-mRNA-1 |
| chr2_3 | CDS | 52020340 | 52020462 | 52020340 | ID=Msa0298120-mRNA-1:cds;Parent=Msa0298120-mRNA-1 |
| chr2_3 | CDS | 52019485 | 52020138 | 52019485 | ID=Msa0298120-mRNA-1:cds;Parent=Msa0298120-mRNA-1 |
| chr2_3 | three_prime_UTR | 52019306 | 52019484 | 52019306 | ID=Msa0298120-mRNA-1:three_prime_utr;Parent=Msa0298120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
