AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0053040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0053040 MtrunA17_Chr1g0151781 98.547 344 5 0 1 344 1 344 0.0 708
Msa0053040 MtrunA17_Chr7g0249421 46.687 332 148 4 33 335 60 391 3.67e-98 299
Msa0053040 MtrunA17_Chr4g0022171 47.284 313 151 3 33 331 61 373 8.00e-98 297
Msa0053040 MtrunA17_Chr7g0243571 46.278 309 153 3 37 332 60 368 5.84e-97 294
Msa0053040 MtrunA17_Chr2g0324061 48.077 312 149 3 33 331 55 366 3.78e-95 290
Msa0053040 MtrunA17_Chr7g0221691 47.799 318 142 6 33 328 93 408 1.02e-94 289
Msa0053040 MtrunA17_Chr4g0004971 45.902 305 155 5 40 336 49 351 2.43e-87 267
Msa0053040 MtrunA17_Chr1g0192421 44.108 297 164 2 35 329 55 351 6.54e-86 263
Msa0053040 MtrunA17_Chr8g0342431 44.578 332 141 6 33 329 50 373 8.29e-84 259
Msa0053040 MtrunA17_Chr4g0067711 41.049 324 181 6 21 337 41 361 4.05e-83 256
Msa0053040 MtrunA17_Chr2g0295401 41.875 320 178 5 21 334 42 359 6.96e-83 255
Msa0053040 MtrunA17_Chr7g0272061 42.345 307 158 5 38 329 60 362 4.89e-82 254
Msa0053040 MtrunA17_Chr4g0066371 27.304 293 170 7 51 324 68 336 1.50e-31 122
Msa0053040 MtrunA17_Chr6g0486661 29.180 305 170 8 42 324 97 377 2.97e-30 121
Msa0053040 MtrunA17_Chr3g0136711 35.398 226 115 8 114 331 82 284 2.94e-27 108
Msa0053040 MtrunA17_Chr2g0286951 28.364 275 155 5 68 324 87 337 2.07e-26 108
Msa0053040 MtrunA17_Chr1g0150451 32.911 237 119 6 70 305 110 307 6.64e-26 105
Msa0053040 MtrunA17_Chr5g0396731 34.361 227 108 8 68 288 107 298 3.47e-23 98.6
Msa0053040 MtrunA17_Chr4g0070871 32.618 233 126 8 57 287 242 445 3.90e-22 97.1
Msa0053040 MtrunA17_Chr3g0135961 32.231 242 135 8 49 287 269 484 2.20e-21 95.1
Msa0053040 MtrunA17_Chr5g0435721 31.660 259 126 9 46 290 200 421 1.07e-20 92.8
Msa0053040 MtrunA17_Chr4g0051661 29.151 271 149 9 39 307 154 383 3.72e-20 90.5
Msa0053040 MtrunA17_Chr1g0212961 30.000 240 124 8 67 305 125 321 4.57e-20 89.7
Msa0053040 MtrunA17_Chr6g0483411 31.120 241 109 6 67 288 78 280 6.87e-20 89.0
Msa0053040 MtrunA17_Chr3g0112291 32.203 236 112 10 68 290 123 323 1.28e-19 89.0
Msa0053040 MtrunA17_Chr1g0194191 30.736 231 122 9 64 288 114 312 1.14e-18 86.3
Msa0053040 MtrunA17_Chr1g0158781 30.081 246 134 7 46 288 120 330 1.45e-18 85.9
Msa0053040 MtrunA17_Chr3g0136811 28.929 280 145 10 43 288 28 287 1.52e-18 85.5
Msa0053040 MtrunA17_Chr8g0389921 31.818 220 119 7 68 287 198 386 3.15e-18 85.5
Msa0053040 MtrunA17_Chr3g0138281 28.986 276 147 10 67 335 120 353 7.58e-18 83.6
Msa0053040 MtrunA17_Chr5g0407161 29.515 227 114 9 67 288 123 308 8.87e-18 83.6
Msa0053040 MtrunA17_Chr2g0299981 29.915 234 122 6 68 283 267 476 9.82e-18 84.3
Msa0053040 MtrunA17_Chr1g0150781 31.250 224 125 8 68 287 290 488 1.26e-17 84.0
Msa0053040 MtrunA17_Chr1g0150071 28.571 280 146 10 43 288 28 287 5.61e-17 80.9
Msa0053040 MtrunA17_Chr5g0426141 30.952 252 133 10 55 305 54 265 1.57e-16 78.6
Msa0053040 MtrunA17_Chr3g0126511 30.380 237 125 6 70 305 127 324 4.56e-16 78.6
Msa0053040 MtrunA17_Chr3g0105371 30.279 251 131 12 40 287 89 298 6.63e-16 77.8
Msa0053040 MtrunA17_Chr3g0144111 33.333 165 87 5 128 287 43 189 9.19e-16 76.3
Msa0053040 MtrunA17_Chr4g0001761 27.857 280 148 10 43 288 28 287 9.22e-16 77.4
Msa0053040 MtrunA17_Chr7g0256751 29.278 263 138 9 51 288 51 290 9.39e-16 77.8
Msa0053040 MtrunA17_Chr4g0050381 29.960 247 128 13 62 305 56 260 1.04e-15 76.3
Msa0053040 MtrunA17_Chr2g0317021 29.596 223 126 10 115 329 134 333 1.12e-15 77.0
Msa0053040 MtrunA17_Chr2g0293811 26.638 229 128 8 67 288 99 294 1.13e-15 77.4
Msa0053040 MtrunA17_Chr4g0067301 28.053 303 147 11 68 310 164 455 1.95e-15 77.0
Msa0053040 MtrunA17_Chr2g0295991 27.925 265 136 9 68 288 166 419 3.68e-15 76.3
Msa0053040 MtrunA17_Chr3g0115851 28.807 243 133 9 64 305 62 265 4.15e-15 74.7
Msa0053040 MtrunA17_Chr3g0105351 30.120 249 134 11 40 287 65 274 5.05e-15 74.7
Msa0053040 MtrunA17_Chr3g0089711 29.260 311 148 14 65 330 65 348 6.49e-15 75.1
Msa0053040 MtrunA17_Chr3g0089721 29.450 309 150 14 65 330 65 348 9.11e-15 74.7
Msa0053040 MtrunA17_Chr8g0360351 28.000 250 121 11 66 305 65 265 2.34e-14 72.4
Msa0053040 MtrunA17_Chr2g0279151 27.881 269 153 10 38 305 36 264 2.59e-14 72.4
Msa0053040 MtrunA17_Chr4g0063051 25.568 352 191 13 19 337 10 323 2.60e-14 73.2
Msa0053040 MtrunA17_Chr7g0256771 28.295 258 120 12 64 288 66 291 7.61e-14 71.2
Msa0053040 MtrunA17_Chr1g0213351 27.742 310 166 13 62 340 74 356 9.78e-14 71.6
Msa0053040 MtrunA17_Chr7g0238501 24.834 302 175 11 40 312 238 516 1.34e-13 71.6
Msa0053040 MtrunA17_Chr4g0039061 26.119 268 158 8 68 312 202 452 2.72e-13 70.5
Msa0053040 MtrunA17_Chr5g0430481 29.134 254 130 10 40 287 125 334 3.50e-13 69.7
Msa0053040 MtrunA17_Chr4g0065141 23.827 277 155 8 67 332 123 354 6.41e-13 69.3
Msa0053040 MtrunA17_Chr7g0263281 27.170 265 136 10 53 288 56 292 1.37e-12 68.2
Msa0053040 MtrunA17_Chr3g0089691 30.000 230 102 10 163 343 62 281 2.83e-12 66.6
Msa0053040 MtrunA17_Chr1g0193691 31.788 151 72 4 184 312 712 853 4.38e-11 64.3
Msa0053040 MtrunA17_Chr1g0171571 26.471 272 160 10 61 329 411 645 6.68e-11 63.5
Msa0053040 MtrunA17_Chr7g0250061 28.364 275 141 12 66 312 74 320 9.77e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0053040 AT5G26010.1 53.824 340 139 8 1 333 1 329 3.70e-107 317
Msa0053040 AT4G32950.1 49.271 343 144 7 1 333 1 323 2.23e-102 304
Msa0053040 AT5G36250.1 46.061 330 151 5 33 335 62 391 1.14e-100 304
Msa0053040 AT1G16220.1 48.910 321 142 5 31 329 57 377 1.51e-99 303
Msa0053040 AT1G79630.1 44.022 368 156 5 11 336 48 407 4.33e-99 302
Msa0053040 AT1G79630.8 44.022 368 156 5 11 336 44 403 4.36e-99 302
Msa0053040 AT1G03590.1 46.398 347 166 4 1 331 23 365 5.99e-99 300
Msa0053040 AT5G36250.2 44.477 344 150 6 33 335 62 405 1.26e-96 294
Msa0053040 AT4G03415.1 48.039 306 144 5 41 331 70 375 1.74e-92 284
Msa0053040 AT4G03415.3 48.039 306 144 5 41 331 70 375 1.74e-92 284
Msa0053040 AT4G03415.2 48.039 306 144 5 41 331 70 375 1.74e-92 284
Msa0053040 AT3G02750.2 45.322 342 146 4 33 334 59 399 4.70e-92 283
Msa0053040 AT3G02750.1 45.322 342 146 4 33 334 59 399 4.70e-92 283
Msa0053040 AT1G79630.2 46.326 313 127 3 65 336 25 337 1.19e-90 278
Msa0053040 AT1G79630.7 46.326 313 127 3 65 336 25 337 1.19e-90 278
Msa0053040 AT5G01700.1 45.151 299 152 4 44 336 4 296 7.81e-88 268
Msa0053040 AT5G01700.2 44.884 303 155 4 40 336 49 345 3.29e-87 268
Msa0053040 AT3G02750.3 41.114 377 146 5 33 334 59 434 1.05e-84 266
Msa0053040 AT3G05640.2 44.407 295 155 5 38 329 62 350 3.44e-82 254
Msa0053040 AT3G05640.1 44.407 295 155 5 38 329 62 350 3.44e-82 254
Msa0053040 AT3G05640.3 44.407 295 155 5 38 329 62 350 3.44e-82 254
Msa0053040 AT1G79630.6 56.279 215 93 1 116 329 76 290 4.78e-82 254
Msa0053040 AT1G79630.3 56.279 215 93 1 116 329 76 290 4.78e-82 254
Msa0053040 AT1G79630.4 56.279 215 93 1 116 329 76 290 4.78e-82 254
Msa0053040 AT1G79630.5 56.279 215 93 1 116 329 76 290 4.78e-82 254
Msa0053040 AT5G27930.1 42.662 293 165 3 38 327 61 353 1.46e-79 248
Msa0053040 AT5G27930.2 42.662 293 165 3 38 327 61 353 1.46e-79 248
Msa0053040 AT4G32950.2 47.350 283 121 6 1 275 1 263 8.56e-78 240
Msa0053040 AT5G36250.3 44.322 273 125 5 33 278 62 334 2.70e-76 238
Msa0053040 AT3G16800.2 39.262 298 171 4 35 329 59 349 1.87e-74 234
Msa0053040 AT3G16800.1 39.262 298 171 4 35 329 59 349 1.87e-74 234
Msa0053040 AT3G16800.3 39.262 298 171 4 35 329 59 349 1.87e-74 234
Msa0053040 AT3G16800.4 38.697 261 151 3 71 329 1 254 4.45e-64 204
Msa0053040 AT3G16800.6 38.697 261 151 3 71 329 1 254 4.45e-64 204
Msa0053040 AT5G27930.3 42.739 241 135 3 38 275 61 301 1.44e-63 205
Msa0053040 AT2G20050.1 30.645 310 167 8 39 324 108 393 3.66e-34 133
Msa0053040 AT2G20050.2 30.645 310 167 8 39 324 108 393 3.83e-34 133
Msa0053040 AT3G16800.5 36.310 168 97 4 35 199 59 219 1.00e-29 114
Msa0053040 AT3G06270.1 26.756 299 176 7 51 330 70 344 4.84e-28 112
Msa0053040 AT5G10740.1 31.321 265 134 8 67 329 63 281 7.45e-26 106
Msa0053040 AT5G10740.2 31.321 265 134 8 67 329 63 281 7.45e-26 106
Msa0053040 AT4G31750.1 36.036 222 112 7 114 327 81 280 1.10e-25 105
Msa0053040 AT4G31750.3 36.036 222 112 7 114 327 81 280 1.10e-25 105
Msa0053040 AT4G31750.2 36.036 222 112 7 114 327 81 280 1.44e-25 104
Msa0053040 AT1G07430.1 31.900 279 156 11 22 290 102 356 2.45e-25 106
Msa0053040 AT5G59220.1 32.342 269 125 9 41 290 114 344 6.40e-25 104
Msa0053040 AT5G24940.1 31.061 264 134 8 68 329 64 281 1.08e-24 104
Msa0053040 AT1G43900.1 32.231 242 123 7 67 307 153 354 6.61e-22 95.9
Msa0053040 AT3G11410.1 30.855 269 126 11 46 290 112 344 2.24e-20 91.7
Msa0053040 AT1G72770.4 31.064 235 125 7 66 287 236 446 1.28e-19 90.1
Msa0053040 AT1G72770.1 31.064 235 125 7 66 287 236 446 1.28e-19 90.1
Msa0053040 AT1G72770.3 31.064 235 125 7 66 287 236 446 1.28e-19 90.1
Msa0053040 AT2G20630.2 29.577 284 134 13 65 337 60 288 2.24e-19 87.4
Msa0053040 AT2G20630.1 30.159 252 120 10 65 307 60 264 5.68e-19 85.9
Msa0053040 AT4G28400.3 29.730 259 125 10 62 311 40 250 7.38e-19 85.5
Msa0053040 AT4G28400.1 29.730 259 125 10 62 311 62 272 1.15e-18 85.1
Msa0053040 AT2G29380.1 29.297 256 152 10 41 290 80 312 2.02e-18 85.5
Msa0053040 AT5G53140.1 29.412 272 134 10 70 334 134 354 3.26e-18 85.5
Msa0053040 AT5G53140.2 29.412 272 134 10 70 334 134 354 3.26e-18 85.5
Msa0053040 AT2G33700.1 30.142 282 137 12 66 336 121 353 6.65e-18 84.3
Msa0053040 AT2G25620.1 29.137 278 141 11 67 332 127 360 8.56e-18 84.0
Msa0053040 AT2G25620.2 29.137 278 141 11 67 332 127 360 8.56e-18 84.0
Msa0053040 AT5G57050.2 30.909 220 124 6 68 287 120 311 1.16e-17 83.6
Msa0053040 AT5G57050.1 30.909 220 124 6 68 287 160 351 1.50e-17 83.6
Msa0053040 AT4G26080.1 31.797 217 116 8 68 283 172 357 1.68e-17 83.6
Msa0053040 AT5G51760.2 30.417 240 131 7 68 295 114 329 1.88e-17 83.2
Msa0053040 AT5G51760.1 30.417 240 131 7 68 295 144 359 2.11e-17 83.2
Msa0053040 AT2G34740.1 31.955 266 131 13 67 329 118 336 3.22e-17 82.0
Msa0053040 AT3G62260.3 29.310 232 125 8 64 288 23 222 4.94e-17 80.9
Msa0053040 AT1G17550.1 30.493 223 131 6 68 283 237 442 9.51e-17 81.6
Msa0053040 AT1G17550.2 30.493 223 131 6 68 283 237 442 9.51e-17 81.6
Msa0053040 AT4G31860.1 27.857 280 148 10 43 288 28 287 1.14e-16 80.5
Msa0053040 AT3G62260.2 29.310 232 125 8 64 288 113 312 1.33e-16 80.5
Msa0053040 AT3G62260.1 29.310 232 125 8 64 288 112 311 1.44e-16 80.5
Msa0053040 AT1G78200.5 32.804 189 97 5 126 305 54 221 1.89e-16 78.2
Msa0053040 AT1G78200.4 32.804 189 97 5 126 305 54 221 1.89e-16 78.2
Msa0053040 AT1G67820.2 29.766 299 170 9 41 337 87 347 2.21e-16 80.1
Msa0053040 AT1G67820.1 29.766 299 170 9 41 337 123 383 3.26e-16 79.7
Msa0053040 AT1G78200.1 33.516 182 105 5 126 305 99 266 3.42e-16 78.2
Msa0053040 AT1G78200.3 33.516 182 105 5 126 305 99 266 3.42e-16 78.2
Msa0053040 AT1G78200.2 33.516 182 105 5 126 305 99 266 3.42e-16 78.2
Msa0053040 AT1G22280.3 31.250 256 123 14 59 305 59 270 3.46e-16 78.2
Msa0053040 AT3G51470.2 27.848 237 125 8 57 288 51 246 5.67e-16 78.2
Msa0053040 AT3G51470.1 28.270 237 124 9 57 288 95 290 6.71e-16 78.2
Msa0053040 AT2G40180.1 29.368 269 142 10 28 288 118 346 9.93e-16 78.2
Msa0053040 AT3G17250.1 26.957 230 130 8 67 288 157 356 2.02e-15 77.4
Msa0053040 AT1G18030.1 29.060 234 123 5 67 288 108 310 2.05e-15 76.6
Msa0053040 AT1G18030.2 29.437 231 106 5 67 278 108 300 2.18e-15 76.3
Msa0053040 AT1G07160.1 27.891 294 170 10 40 328 124 380 7.74e-15 75.1
Msa0053040 AT2G30020.1 28.287 251 138 9 40 287 141 352 2.25e-14 73.9
Msa0053040 AT1G34750.2 28.866 194 95 7 126 305 101 265 5.61e-14 71.6
Msa0053040 AT1G34750.1 28.866 194 95 7 126 305 101 265 5.61e-14 71.6
Msa0053040 AT1G34750.3 28.866 194 95 7 126 305 101 265 5.61e-14 71.6
Msa0053040 AT1G22280.1 32.673 202 106 10 115 305 82 264 8.43e-14 71.2
Msa0053040 AT3G16560.3 25.087 287 162 9 68 312 175 450 1.89e-13 71.6
Msa0053040 AT3G16560.1 25.087 287 162 9 68 312 175 450 2.57e-13 71.2
Msa0053040 AT3G16560.4 25.087 287 162 9 68 312 175 450 2.57e-13 71.2
Msa0053040 AT3G16560.2 25.087 287 162 9 68 312 175 450 2.57e-13 71.2
Msa0053040 AT4G28400.2 30.088 226 101 10 62 278 62 239 3.94e-13 68.9
Msa0053040 AT1G48040.1 28.509 228 127 9 67 288 115 312 4.90e-13 70.1
Msa0053040 AT3G55050.1 26.207 290 158 13 50 312 68 328 1.49e-12 68.6
Msa0053040 AT3G55050.2 26.207 290 158 13 50 312 68 328 1.49e-12 68.6
Msa0053040 AT3G15260.2 29.231 195 102 8 125 307 104 274 6.12e-12 65.9
Msa0053040 AT3G15260.1 29.231 195 102 8 125 307 104 274 6.12e-12 65.9
Msa0053040 AT3G12620.2 27.500 280 137 12 66 312 81 327 7.42e-12 66.2
Msa0053040 AT3G12620.1 27.500 280 137 12 66 312 81 327 7.42e-12 66.2
Msa0053040 AT5G06750.3 26.855 283 156 10 58 312 71 330 2.06e-11 65.1
Msa0053040 AT5G06750.1 26.855 283 156 10 58 312 71 330 2.06e-11 65.1
Msa0053040 AT4G27800.2 31.282 195 88 7 126 288 131 311 4.01e-11 63.9
Msa0053040 AT4G27800.3 31.282 195 88 7 126 288 131 311 4.42e-11 63.5
Msa0053040 AT4G27800.1 31.282 195 88 7 126 288 131 311 5.76e-11 63.5
Msa0053040 AT2G34740.2 33.889 180 93 10 112 282 147 309 6.77e-11 63.2
Msa0053040 AT2G34740.3 31.193 218 108 11 67 282 114 291 7.23e-11 62.8

Find 78 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGTTGTGTTTATGCGTTAA+AGG 0.236530 1_2:-7452121 Msa0053040:CDS
TTATTGCTACACCAGATATT+TGG 0.238563 1_2:-7451999 Msa0053040:CDS
ACCACAAAACTTGGAGTATA+TGG 0.271089 1_2:-7451672 Msa0053040:CDS
AAAGTCTCTTAGTCTCATTT+TGG 0.297664 1_2:+7453950 None:intergenic
TCTCCTCAAGGGCATTCTTT+TGG 0.300576 1_2:+7453163 None:intergenic
TATATGGACAGTGGAAAATT+AGG 0.305057 1_2:-7451656 Msa0053040:CDS
CAGGCGAAGCAAAGAGAATA+AGG 0.327044 1_2:-7452152 Msa0053040:CDS
TCTTGGAGCTTTCAATGTAA+TGG 0.363239 1_2:-7453064 Msa0053040:CDS
CTAGCCATGTCTCGAGCTTT+CGG 0.377337 1_2:-7452048 Msa0053040:CDS
GGTGACTCAAGAGCAATATT+AGG 0.378928 1_2:-7452856 Msa0053040:CDS
AGATGGAAAGAAGCTATTCT+TGG 0.379447 1_2:-7453081 Msa0053040:CDS
AAACGGTGATACCAAATATC+TGG 0.385349 1_2:+7451988 None:intergenic
GTGGTTTCTTCTGCAGGAAA+TGG 0.397763 1_2:+7451690 None:intergenic
CACTTGCAAGAACAATAAAT+TGG 0.399587 1_2:+7451953 None:intergenic
AGTACCTTGTTTAGAGTAAA+CGG 0.400838 1_2:+7453924 None:intergenic
TAGGCCAGGGTAGTTCTCAT+TGG 0.416310 1_2:+7452068 None:intergenic
TTTCAAACAACTATCTAAGA+TGG 0.418400 1_2:-7453098 Msa0053040:CDS
CAAATCAGTGGTCAATTGAA+TGG 0.418841 1_2:+7452807 None:intergenic
ATTGGTCACTTGATGTTAAA+CGG 0.419251 1_2:+7451971 None:intergenic
TTACTCTAAACAAGGTACTA+AGG 0.430230 1_2:-7453920 Msa0053040:CDS
AACCACATGTCCAACGAGTA+TGG 0.432459 1_2:-7452095 Msa0053040:CDS
GTTGCATCTTCAGAGATTCA+TGG 0.433464 1_2:-7454024 Msa0053040:CDS
TTTATTGTTCTTGCAAGTGA+TGG 0.439321 1_2:-7451949 Msa0053040:CDS
GCAGAAGAAACCACAAAACT+TGG 0.461758 1_2:-7451681 Msa0053040:CDS
TTGACCACTGATTTGAAGCC+GGG 0.462099 1_2:-7452799 Msa0053040:CDS
CTTCTTTGCCCATGCAGCTG+TGG 0.475385 1_2:+7451751 None:intergenic
CATTCTCATCATGAACTTGA+GGG 0.480118 1_2:+7453998 None:intergenic
AAGGATTATGGGATGAAAGA+TGG 0.481239 1_2:-7453276 Msa0053040:CDS
AGGCCAGGGTAGTTCTCATT+GGG 0.484559 1_2:+7452069 None:intergenic
TTATTGTTCTTGCAAGTGAT+GGG 0.484730 1_2:-7451948 Msa0053040:CDS
GGAAGCAGCCACAGCTGCAT+GGG 0.485485 1_2:-7451759 Msa0053040:CDS
GCTCGAGACATGGCTAGGCC+AGG 0.488145 1_2:+7452054 None:intergenic
GGAAGCTGCAAGGGCAGTGG+TGG 0.495822 1_2:-7451780 Msa0053040:CDS
GAGTGAAGAGGAAGCTGCAA+GGG 0.496594 1_2:-7451789 Msa0053040:CDS
CAAAGAAGTTTCCTTCCTCT+AGG 0.507704 1_2:-7451736 Msa0053040:CDS
GGTGAAGAGAAGCAGCATCT+TGG 0.517349 1_2:+7453890 None:intergenic
AGATGCTGCTTCTCTTCACC+AGG 0.518124 1_2:-7453887 Msa0053040:intron
ATTGACCACTGATTTGAAGC+CGG 0.518210 1_2:-7452800 Msa0053040:CDS
TGCTGTAGTTGTCATAAGAC+AGG 0.527202 1_2:-7452989 Msa0053040:intron
TGGAAGCAGCCACAGCTGCA+TGG 0.533129 1_2:-7451760 Msa0053040:CDS
AATCTAGATTGTTCTTGTAG+TGG 0.537196 1_2:-7453018 Msa0053040:CDS
TACTCTAAACAAGGTACTAA+GGG 0.539094 1_2:-7453919 Msa0053040:CDS
AGAATCTTACAAGGCAATCC+CGG 0.541715 1_2:+7452781 None:intergenic
TTGTTGTATTAATCTCCTCA+AGG 0.549692 1_2:+7453151 None:intergenic
ACATTCTCATCATGAACTTG+AGG 0.551482 1_2:+7453997 None:intergenic
TGTTGTATTAATCTCCTCAA+GGG 0.556478 1_2:+7453152 None:intergenic
GGTCTTATCATAGTTAACCT+TGG 0.561803 1_2:-7452877 Msa0053040:CDS
AAAGAAGTTTCCTTCCTCTA+GGG 0.562358 1_2:-7451735 Msa0053040:CDS
AACCATACTCGTTGGACATG+TGG 0.563398 1_2:+7452093 None:intergenic
CATTGGGCAACCATACTCGT+TGG 0.565790 1_2:+7452085 None:intergenic
CGAAAGCTCGAGACATGGCT+AGG 0.567459 1_2:+7452049 None:intergenic
TTTCAATGTAATGGATGAAG+AGG 0.572129 1_2:-7453055 Msa0053040:CDS
CATGATATTTGAAGCAAGCA+AGG 0.574257 1_2:-7453974 Msa0053040:CDS
AGAGGAAGCTGCAAGGGCAG+TGG 0.574488 1_2:-7451783 Msa0053040:CDS
CTCGAGACATGGCTAGGCCA+GGG 0.576527 1_2:+7452055 None:intergenic
TTGCCCAATGAGAACTACCC+TGG 0.599999 1_2:-7452072 Msa0053040:CDS
CAATCATCTACCCTAGAGGA+AGG 0.600898 1_2:+7451725 None:intergenic
ATGAATCTCTGAAGATGCAA+CGG 0.607268 1_2:+7454026 None:intergenic
GAGCCAAAAGAATGCCCTTG+AGG 0.608848 1_2:-7453166 Msa0053040:CDS
AGAGTGAAGAGGAAGCTGCA+AGG 0.613435 1_2:-7451790 Msa0053040:CDS
TGCTCCGTTTACTCTAAACA+AGG 0.613627 1_2:-7453928 Msa0053040:CDS
TATTGTTCTTGCAAGTGATG+GGG 0.615238 1_2:-7451947 Msa0053040:intron
ATCTCCGAAAGCTCGAGACA+TGG 0.616410 1_2:+7452044 None:intergenic
GAACAATATAAACAGGGTGA+AGG 0.617168 1_2:-7452898 Msa0053040:intron
TGTGGTGTTTATGATGGACA+TGG 0.621779 1_2:-7453246 Msa0053040:CDS
GGTTGCATCAATTGTGTGGA+TGG 0.622975 1_2:-7451816 Msa0053040:CDS
GATTTCATACTTAAAGACCA+TGG 0.635074 1_2:-7452024 Msa0053040:CDS
CAATCCCGGCTTCAAATCAG+TGG 0.636969 1_2:+7452795 None:intergenic
GTGGATGGTAGAGAGTGAAG+AGG 0.644994 1_2:-7451801 Msa0053040:CDS
AAGAGGTTGCATCAATTGTG+TGG 0.658363 1_2:-7451820 Msa0053040:CDS
AAGAGAATAAGGAGTTGCAA+CGG 0.664540 1_2:-7452141 Msa0053040:CDS
AACTTGGAGTATATGGACAG+TGG 0.675658 1_2:-7451665 Msa0053040:CDS
GGATGTACTAAGTAATGAAG+AGG 0.676441 1_2:-7451837 Msa0053040:CDS
ATATTGCTCTTGAGTCACCA+AGG 0.689464 1_2:+7452860 None:intergenic
CTGCAGGAAATGGCAAACCA+CGG 0.691531 1_2:+7451700 None:intergenic
GGTGCAATCATCTACCCTAG+AGG 0.703711 1_2:+7451721 None:intergenic
CTGGTGTAGCAATAACACCA+TGG 0.708013 1_2:+7452007 None:intergenic
TAGGGTAGATGATTGCACCG+TGG 0.761662 1_2:-7451717 Msa0053040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAAAATATTATTATATT+TGG + chr1_2:7453295-7453314 None:intergenic 0.0%
!! TATTAAAATATTATTATATT+TGG + chr1_2:7453295-7453314 None:intergenic 0.0%
!! AAAAAAAAAAAAAACTTTGA+TGG - chr1_2:7452144-7452163 Msa0053040:CDS 10.0%
!! TATCTTAAATTACTAAAAAA+AGG + chr1_2:7452194-7452213 None:intergenic 10.0%
!!! ATCATTTTCTAAAAAAAAAA+AGG - chr1_2:7453227-7453246 Msa0053040:CDS 10.0%
!! AAAAAAAAAAAAAACTTTGA+TGG - chr1_2:7452144-7452163 Msa0053040:CDS 10.0%
!! TATCTTAAATTACTAAAAAA+AGG + chr1_2:7452194-7452213 None:intergenic 10.0%
!!! ATCATTTTCTAAAAAAAAAA+AGG - chr1_2:7453227-7453246 Msa0053040:CDS 10.0%
!!! AATTTAAGATATCATGATTA+TGG - chr1_2:7452203-7452222 Msa0053040:intron 15.0%
!!! ATTTTCTAAAAAAAAAAAGG+TGG - chr1_2:7453230-7453249 Msa0053040:CDS 15.0%
!! TATTTGTATCTAAACTAAAT+TGG - chr1_2:7453515-7453534 Msa0053040:intron 15.0%
!!! AATTTAAGATATCATGATTA+TGG - chr1_2:7452203-7452222 Msa0053040:intron 15.0%
!!! ATTTTCTAAAAAAAAAAAGG+TGG - chr1_2:7453230-7453249 Msa0053040:CDS 15.0%
!! TATTTGTATCTAAACTAAAT+TGG - chr1_2:7453515-7453534 Msa0053040:intron 15.0%
!!! TAACCTTTAAATAATTTGCA+TGG - chr1_2:7451849-7451868 Msa0053040:intron 20.0%
!!! AATTTGAAGATAATTTTGCA+TGG - chr1_2:7451988-7452007 Msa0053040:CDS 20.0%
!! TGTTGTGATCTTTAATATTA+AGG - chr1_2:7452046-7452065 Msa0053040:CDS 20.0%
!! AAGTACATGACTTTATAAAA+AGG + chr1_2:7452326-7452345 None:intergenic 20.0%
!! TTAAGGAAAAAGAAACAAAA+GGG + chr1_2:7452398-7452417 None:intergenic 20.0%
!! TTTAAGGAAAAAGAAACAAA+AGG + chr1_2:7452399-7452418 None:intergenic 20.0%
!!! TTTGTTTCTTTTTCCTTAAA+AGG - chr1_2:7452399-7452418 Msa0053040:intron 20.0%
!!! TTTTTCCTTAAAAGGATTAT+GGG - chr1_2:7452407-7452426 Msa0053040:intron 20.0%
!! GAGATTAATACAACAAAAAA+TGG - chr1_2:7452550-7452569 Msa0053040:intron 20.0%
!! ATAACAAGAACAATATAAAC+AGG - chr1_2:7452789-7452808 Msa0053040:intron 20.0%
!! TAACAAGAACAATATAAACA+GGG - chr1_2:7452790-7452809 Msa0053040:intron 20.0%
!! TTCATATAACTGTTAAACTA+AGG + chr1_2:7453152-7453171 None:intergenic 20.0%
!! ATATTTGGATTAAAATACGT+CGG + chr1_2:7453280-7453299 None:intergenic 20.0%
!!! AATGGCTTTATCATTATTTA+TGG - chr1_2:7453812-7453831 Msa0053040:intron 20.0%
!!! TATGGATATTTTTTGCTTAT+AGG - chr1_2:7453830-7453849 Msa0053040:intron 20.0%
!!! TAACCTTTAAATAATTTGCA+TGG - chr1_2:7451849-7451868 Msa0053040:intron 20.0%
!!! AATTTGAAGATAATTTTGCA+TGG - chr1_2:7451988-7452007 Msa0053040:CDS 20.0%
!! TGTTGTGATCTTTAATATTA+AGG - chr1_2:7452046-7452065 Msa0053040:CDS 20.0%
!! AAGTACATGACTTTATAAAA+AGG + chr1_2:7452326-7452345 None:intergenic 20.0%
!! TTAAGGAAAAAGAAACAAAA+GGG + chr1_2:7452398-7452417 None:intergenic 20.0%
!! TTTAAGGAAAAAGAAACAAA+AGG + chr1_2:7452399-7452418 None:intergenic 20.0%
!!! TTTGTTTCTTTTTCCTTAAA+AGG - chr1_2:7452399-7452418 Msa0053040:intron 20.0%
!!! TTTTTCCTTAAAAGGATTAT+GGG - chr1_2:7452407-7452426 Msa0053040:intron 20.0%
!! GAGATTAATACAACAAAAAA+TGG - chr1_2:7452550-7452569 Msa0053040:intron 20.0%
!! ATAACAAGAACAATATAAAC+AGG - chr1_2:7452789-7452808 Msa0053040:intron 20.0%
!! TAACAAGAACAATATAAACA+GGG - chr1_2:7452790-7452809 Msa0053040:intron 20.0%
!! TTCATATAACTGTTAAACTA+AGG + chr1_2:7453152-7453171 None:intergenic 20.0%
!! ATATTTGGATTAAAATACGT+CGG + chr1_2:7453280-7453299 None:intergenic 20.0%
!!! AATGGCTTTATCATTATTTA+TGG - chr1_2:7453812-7453831 Msa0053040:intron 20.0%
!!! TATGGATATTTTTTGCTTAT+AGG - chr1_2:7453830-7453849 Msa0053040:intron 20.0%
!! CTTTTTCCTTAAAAGGATTA+TGG - chr1_2:7452406-7452425 Msa0053040:intron 25.0%
! TTTCAAACAACTATCTAAGA+TGG - chr1_2:7452596-7452615 Msa0053040:intron 25.0%
! TTTATGAGAAGAATCTTACA+AGG + chr1_2:7452925-7452944 None:intergenic 25.0%
!!! CTTTTCAATTATTGGTTTGA+CGG - chr1_2:7452959-7452978 Msa0053040:intron 25.0%
!!! ATATTTTTTGCTTATAGGTG+TGG - chr1_2:7453835-7453854 Msa0053040:intron 25.0%
!!! TATTTTTTGCTTATAGGTGT+GGG - chr1_2:7453836-7453855 Msa0053040:intron 25.0%
!! CTTTTTCCTTAAAAGGATTA+TGG - chr1_2:7452406-7452425 Msa0053040:intron 25.0%
! TTTCAAACAACTATCTAAGA+TGG - chr1_2:7452596-7452615 Msa0053040:intron 25.0%
! TTTATGAGAAGAATCTTACA+AGG + chr1_2:7452925-7452944 None:intergenic 25.0%
!!! CTTTTCAATTATTGGTTTGA+CGG - chr1_2:7452959-7452978 Msa0053040:intron 25.0%
!!! ATATTTTTTGCTTATAGGTG+TGG - chr1_2:7453835-7453854 Msa0053040:intron 25.0%
!!! TATTTTTTGCTTATAGGTGT+GGG - chr1_2:7453836-7453855 Msa0053040:intron 25.0%
! AAAGTCTCTTAGTCTCATTT+TGG + chr1_2:7451747-7451766 None:intergenic 30.0%
! AGTACCTTGTTTAGAGTAAA+CGG + chr1_2:7451773-7451792 None:intergenic 30.0%
! TTACTCTAAACAAGGTACTA+AGG - chr1_2:7451774-7451793 Msa0053040:CDS 30.0%
! TACTCTAAACAAGGTACTAA+GGG - chr1_2:7451775-7451794 Msa0053040:CDS 30.0%
TGGCCATGCAAATTATTTAA+AGG + chr1_2:7451855-7451874 None:intergenic 30.0%
ATGAGAGAATTAAAACCTTG+TGG + chr1_2:7451875-7451894 None:intergenic 30.0%
!!! ACAAGGTTTTAATTCTCTCA+TGG - chr1_2:7451874-7451893 Msa0053040:intron 30.0%
TCTTCAAATTCTACACAACT+TGG + chr1_2:7451978-7451997 None:intergenic 30.0%
CAATCTGAGTCAAGATATTA+AGG + chr1_2:7452293-7452312 None:intergenic 30.0%
AGAAACAAAAGGGAGATATA+TGG + chr1_2:7452388-7452407 None:intergenic 30.0%
! TTCATCCCATAATCCTTTTA+AGG + chr1_2:7452415-7452434 None:intergenic 30.0%
!! TATGATGGACATGGAAAAAA+TGG - chr1_2:7452457-7452476 Msa0053040:intron 30.0%
TGTTGTATTAATCTCCTCAA+GGG + chr1_2:7452545-7452564 None:intergenic 30.0%
TTGTTGTATTAATCTCCTCA+AGG + chr1_2:7452546-7452565 None:intergenic 30.0%
!! TTTCAATGTAATGGATGAAG+AGG - chr1_2:7452639-7452658 Msa0053040:intron 30.0%
AATCTAGATTGTTCTTGTAG+TGG - chr1_2:7452676-7452695 Msa0053040:intron 30.0%
!!! TGGCTTTTAGTTTTTCATCT+TGG + chr1_2:7452870-7452889 None:intergenic 30.0%
ATAATTGAAAAGAAGCTGCA+TGG + chr1_2:7452951-7452970 None:intergenic 30.0%
! TGCAGCTTCTTTTCAATTAT+TGG - chr1_2:7452951-7452970 Msa0053040:intron 30.0%
AACTGTTAAACTAAGGTGTA+TGG + chr1_2:7453145-7453164 None:intergenic 30.0%
CAAATAAGAGACTTCTAGAT+AGG - chr1_2:7453201-7453220 Msa0053040:CDS 30.0%
! TGTGTCATTATTGACGTTTA+AGG + chr1_2:7453350-7453369 None:intergenic 30.0%
TTAAACGTCAATAATGACAC+AGG - chr1_2:7453349-7453368 Msa0053040:intron 30.0%
TAAACGTCAATAATGACACA+GGG - chr1_2:7453350-7453369 Msa0053040:intron 30.0%
TCTAAACTAAATTGGAATGC+AGG - chr1_2:7453523-7453542 Msa0053040:intron 30.0%
GATTTCATACTTAAAGACCA+TGG - chr1_2:7453670-7453689 Msa0053040:intron 30.0%
TTATTGCTACACCAGATATT+TGG - chr1_2:7453695-7453714 Msa0053040:intron 30.0%
ATTGGTCACTTGATGTTAAA+CGG + chr1_2:7453726-7453745 None:intergenic 30.0%
CACTTGCAAGAACAATAAAT+TGG + chr1_2:7453744-7453763 None:intergenic 30.0%
TTTATTGTTCTTGCAAGTGA+TGG - chr1_2:7453745-7453764 Msa0053040:intron 30.0%
TTATTGTTCTTGCAAGTGAT+GGG - chr1_2:7453746-7453765 Msa0053040:intron 30.0%
CTTGCATACAACAATTTCAA+TGG - chr1_2:7453794-7453813 Msa0053040:intron 30.0%
TATATGGACAGTGGAAAATT+AGG - chr1_2:7454038-7454057 Msa0053040:CDS 30.0%
! AAAGTCTCTTAGTCTCATTT+TGG + chr1_2:7451747-7451766 None:intergenic 30.0%
! AGTACCTTGTTTAGAGTAAA+CGG + chr1_2:7451773-7451792 None:intergenic 30.0%
! TTACTCTAAACAAGGTACTA+AGG - chr1_2:7451774-7451793 Msa0053040:CDS 30.0%
! TACTCTAAACAAGGTACTAA+GGG - chr1_2:7451775-7451794 Msa0053040:CDS 30.0%
TGGCCATGCAAATTATTTAA+AGG + chr1_2:7451855-7451874 None:intergenic 30.0%
ATGAGAGAATTAAAACCTTG+TGG + chr1_2:7451875-7451894 None:intergenic 30.0%
!!! ACAAGGTTTTAATTCTCTCA+TGG - chr1_2:7451874-7451893 Msa0053040:intron 30.0%
TCTTCAAATTCTACACAACT+TGG + chr1_2:7451978-7451997 None:intergenic 30.0%
CAATCTGAGTCAAGATATTA+AGG + chr1_2:7452293-7452312 None:intergenic 30.0%
AGAAACAAAAGGGAGATATA+TGG + chr1_2:7452388-7452407 None:intergenic 30.0%
! TTCATCCCATAATCCTTTTA+AGG + chr1_2:7452415-7452434 None:intergenic 30.0%
!! TATGATGGACATGGAAAAAA+TGG - chr1_2:7452457-7452476 Msa0053040:intron 30.0%
TGTTGTATTAATCTCCTCAA+GGG + chr1_2:7452545-7452564 None:intergenic 30.0%
TTGTTGTATTAATCTCCTCA+AGG + chr1_2:7452546-7452565 None:intergenic 30.0%
!! TTTCAATGTAATGGATGAAG+AGG - chr1_2:7452639-7452658 Msa0053040:intron 30.0%
AATCTAGATTGTTCTTGTAG+TGG - chr1_2:7452676-7452695 Msa0053040:intron 30.0%
!!! TGGCTTTTAGTTTTTCATCT+TGG + chr1_2:7452870-7452889 None:intergenic 30.0%
ATAATTGAAAAGAAGCTGCA+TGG + chr1_2:7452951-7452970 None:intergenic 30.0%
! TGCAGCTTCTTTTCAATTAT+TGG - chr1_2:7452951-7452970 Msa0053040:intron 30.0%
AACTGTTAAACTAAGGTGTA+TGG + chr1_2:7453145-7453164 None:intergenic 30.0%
CAAATAAGAGACTTCTAGAT+AGG - chr1_2:7453201-7453220 Msa0053040:CDS 30.0%
! TGTGTCATTATTGACGTTTA+AGG + chr1_2:7453350-7453369 None:intergenic 30.0%
TTAAACGTCAATAATGACAC+AGG - chr1_2:7453349-7453368 Msa0053040:intron 30.0%
TAAACGTCAATAATGACACA+GGG - chr1_2:7453350-7453369 Msa0053040:intron 30.0%
TCTAAACTAAATTGGAATGC+AGG - chr1_2:7453523-7453542 Msa0053040:intron 30.0%
GATTTCATACTTAAAGACCA+TGG - chr1_2:7453670-7453689 Msa0053040:intron 30.0%
TTATTGCTACACCAGATATT+TGG - chr1_2:7453695-7453714 Msa0053040:intron 30.0%
ATTGGTCACTTGATGTTAAA+CGG + chr1_2:7453726-7453745 None:intergenic 30.0%
CACTTGCAAGAACAATAAAT+TGG + chr1_2:7453744-7453763 None:intergenic 30.0%
TTTATTGTTCTTGCAAGTGA+TGG - chr1_2:7453745-7453764 Msa0053040:intron 30.0%
TTATTGTTCTTGCAAGTGAT+GGG - chr1_2:7453746-7453765 Msa0053040:intron 30.0%
CTTGCATACAACAATTTCAA+TGG - chr1_2:7453794-7453813 Msa0053040:intron 30.0%
TATATGGACAGTGGAAAATT+AGG - chr1_2:7454038-7454057 Msa0053040:CDS 30.0%
! ATGAATCTCTGAAGATGCAA+CGG + chr1_2:7451671-7451690 None:intergenic 35.0%
CATTCTCATCATGAACTTGA+GGG + chr1_2:7451699-7451718 None:intergenic 35.0%
ACATTCTCATCATGAACTTG+AGG + chr1_2:7451700-7451719 None:intergenic 35.0%
! CATGATATTTGAAGCAAGCA+AGG - chr1_2:7451720-7451739 Msa0053040:CDS 35.0%
! AAATAATTTGCATGGCCACA+AGG - chr1_2:7451857-7451876 Msa0053040:intron 35.0%
ATGGTAATCACGAACAAATG+TGG - chr1_2:7452222-7452241 Msa0053040:intron 35.0%
AAGGATTATGGGATGAAAGA+TGG - chr1_2:7452418-7452437 Msa0053040:intron 35.0%
!! ATGAAAGATGGAGCATTTTG+TGG - chr1_2:7452430-7452449 Msa0053040:intron 35.0%
! GCATTTTGTGGTGTTTATGA+TGG - chr1_2:7452442-7452461 Msa0053040:intron 35.0%
!!! TTTTGGCTCAAAATGAGAGA+TGG + chr1_2:7452517-7452536 None:intergenic 35.0%
AGATGGAAAGAAGCTATTCT+TGG - chr1_2:7452613-7452632 Msa0053040:intron 35.0%
TCTTGGAGCTTTCAATGTAA+TGG - chr1_2:7452630-7452649 Msa0053040:intron 35.0%
GAACAATATAAACAGGGTGA+AGG - chr1_2:7452796-7452815 Msa0053040:CDS 35.0%
! GGTCTTATCATAGTTAACCT+TGG - chr1_2:7452817-7452836 Msa0053040:CDS 35.0%
CAAATCAGTGGTCAATTGAA+TGG + chr1_2:7452890-7452909 None:intergenic 35.0%
ATAAGAGACTTCTAGATAGG+TGG - chr1_2:7453204-7453223 Msa0053040:CDS 35.0%
!! AAGAGCGATGCTATTTCTAA+CGG + chr1_2:7453491-7453510 None:intergenic 35.0%
AAGAGAATAAGGAGTTGCAA+CGG - chr1_2:7453553-7453572 Msa0053040:intron 35.0%
AAACGGTGATACCAAATATC+TGG + chr1_2:7453709-7453728 None:intergenic 35.0%
TATTGTTCTTGCAAGTGATG+GGG - chr1_2:7453747-7453766 Msa0053040:intron 35.0%
GGATGTACTAAGTAATGAAG+AGG - chr1_2:7453857-7453876 Msa0053040:intron 35.0%
AAAGAAGTTTCCTTCCTCTA+GGG - chr1_2:7453959-7453978 Msa0053040:CDS 35.0%
ACCACAAAACTTGGAGTATA+TGG - chr1_2:7454022-7454041 Msa0053040:CDS 35.0%
! TCCATATACTCCAAGTTTTG+TGG + chr1_2:7454026-7454045 None:intergenic 35.0%
! ATGAATCTCTGAAGATGCAA+CGG + chr1_2:7451671-7451690 None:intergenic 35.0%
CATTCTCATCATGAACTTGA+GGG + chr1_2:7451699-7451718 None:intergenic 35.0%
ACATTCTCATCATGAACTTG+AGG + chr1_2:7451700-7451719 None:intergenic 35.0%
! CATGATATTTGAAGCAAGCA+AGG - chr1_2:7451720-7451739 Msa0053040:CDS 35.0%
! AAATAATTTGCATGGCCACA+AGG - chr1_2:7451857-7451876 Msa0053040:intron 35.0%
ATGGTAATCACGAACAAATG+TGG - chr1_2:7452222-7452241 Msa0053040:intron 35.0%
AAGGATTATGGGATGAAAGA+TGG - chr1_2:7452418-7452437 Msa0053040:intron 35.0%
!! ATGAAAGATGGAGCATTTTG+TGG - chr1_2:7452430-7452449 Msa0053040:intron 35.0%
! GCATTTTGTGGTGTTTATGA+TGG - chr1_2:7452442-7452461 Msa0053040:intron 35.0%
!!! TTTTGGCTCAAAATGAGAGA+TGG + chr1_2:7452517-7452536 None:intergenic 35.0%
AGATGGAAAGAAGCTATTCT+TGG - chr1_2:7452613-7452632 Msa0053040:intron 35.0%
TCTTGGAGCTTTCAATGTAA+TGG - chr1_2:7452630-7452649 Msa0053040:intron 35.0%
GAACAATATAAACAGGGTGA+AGG - chr1_2:7452796-7452815 Msa0053040:CDS 35.0%
! GGTCTTATCATAGTTAACCT+TGG - chr1_2:7452817-7452836 Msa0053040:CDS 35.0%
CAAATCAGTGGTCAATTGAA+TGG + chr1_2:7452890-7452909 None:intergenic 35.0%
ATAAGAGACTTCTAGATAGG+TGG - chr1_2:7453204-7453223 Msa0053040:CDS 35.0%
!! AAGAGCGATGCTATTTCTAA+CGG + chr1_2:7453491-7453510 None:intergenic 35.0%
AAGAGAATAAGGAGTTGCAA+CGG - chr1_2:7453553-7453572 Msa0053040:intron 35.0%
AAACGGTGATACCAAATATC+TGG + chr1_2:7453709-7453728 None:intergenic 35.0%
TATTGTTCTTGCAAGTGATG+GGG - chr1_2:7453747-7453766 Msa0053040:intron 35.0%
GGATGTACTAAGTAATGAAG+AGG - chr1_2:7453857-7453876 Msa0053040:intron 35.0%
AAAGAAGTTTCCTTCCTCTA+GGG - chr1_2:7453959-7453978 Msa0053040:CDS 35.0%
ACCACAAAACTTGGAGTATA+TGG - chr1_2:7454022-7454041 Msa0053040:CDS 35.0%
! TCCATATACTCCAAGTTTTG+TGG + chr1_2:7454026-7454045 None:intergenic 35.0%
GTTGCATCTTCAGAGATTCA+TGG - chr1_2:7451670-7451689 Msa0053040:CDS 40.0%
TGCTCCGTTTACTCTAAACA+AGG - chr1_2:7451766-7451785 Msa0053040:CDS 40.0%
TCATGATTGAGAGACAAACC+TGG + chr1_2:7451828-7451847 None:intergenic 40.0%
GCAACATTAGTCGCATTTGA+TGG + chr1_2:7451939-7451958 None:intergenic 40.0%
! TTTTGCATGGCTACACTACA+AGG - chr1_2:7452001-7452020 Msa0053040:CDS 40.0%
ATTTCTTGCTTGAATCGCGT+TGG - chr1_2:7452248-7452267 Msa0053040:intron 40.0%
!! TGTGGTGTTTATGATGGACA+TGG - chr1_2:7452448-7452467 Msa0053040:intron 40.0%
TGCTGTAGTTGTCATAAGAC+AGG - chr1_2:7452705-7452724 Msa0053040:intron 40.0%
ATATTGCTCTTGAGTCACCA+AGG + chr1_2:7452837-7452856 None:intergenic 40.0%
GGTGACTCAAGAGCAATATT+AGG - chr1_2:7452838-7452857 Msa0053040:CDS 40.0%
!! ATTGACCACTGATTTGAAGC+CGG - chr1_2:7452894-7452913 Msa0053040:intron 40.0%
AGAATCTTACAAGGCAATCC+CGG + chr1_2:7452916-7452935 None:intergenic 40.0%
TTAAGCTGCTGATGTCTTCA+AGG - chr1_2:7453105-7453124 Msa0053040:CDS 40.0%
! ACTAGTCTATCGTGATGCTT+TGG + chr1_2:7453437-7453456 None:intergenic 40.0%
ATAGACTAGTGAAACTGCAG+CGG - chr1_2:7453447-7453466 Msa0053040:intron 40.0%
CGGTTGTGTTTATGCGTTAA+AGG - chr1_2:7453573-7453592 Msa0053040:intron 40.0%
AAGAGGTTGCATCAATTGTG+TGG - chr1_2:7453874-7453893 Msa0053040:intron 40.0%
CAAAGAAGTTTCCTTCCTCT+AGG - chr1_2:7453958-7453977 Msa0053040:CDS 40.0%
!! AGTTTTGTGGTTTCTTCTGC+AGG + chr1_2:7454013-7454032 None:intergenic 40.0%
GCAGAAGAAACCACAAAACT+TGG - chr1_2:7454013-7454032 Msa0053040:CDS 40.0%
AACTTGGAGTATATGGACAG+TGG - chr1_2:7454029-7454048 Msa0053040:CDS 40.0%
GTTGCATCTTCAGAGATTCA+TGG - chr1_2:7451670-7451689 Msa0053040:CDS 40.0%
TGCTCCGTTTACTCTAAACA+AGG - chr1_2:7451766-7451785 Msa0053040:CDS 40.0%
TCATGATTGAGAGACAAACC+TGG + chr1_2:7451828-7451847 None:intergenic 40.0%
GCAACATTAGTCGCATTTGA+TGG + chr1_2:7451939-7451958 None:intergenic 40.0%
! TTTTGCATGGCTACACTACA+AGG - chr1_2:7452001-7452020 Msa0053040:CDS 40.0%
ATTTCTTGCTTGAATCGCGT+TGG - chr1_2:7452248-7452267 Msa0053040:intron 40.0%
!! TGTGGTGTTTATGATGGACA+TGG - chr1_2:7452448-7452467 Msa0053040:intron 40.0%
TGCTGTAGTTGTCATAAGAC+AGG - chr1_2:7452705-7452724 Msa0053040:intron 40.0%
ATATTGCTCTTGAGTCACCA+AGG + chr1_2:7452837-7452856 None:intergenic 40.0%
GGTGACTCAAGAGCAATATT+AGG - chr1_2:7452838-7452857 Msa0053040:CDS 40.0%
!! ATTGACCACTGATTTGAAGC+CGG - chr1_2:7452894-7452913 Msa0053040:intron 40.0%
AGAATCTTACAAGGCAATCC+CGG + chr1_2:7452916-7452935 None:intergenic 40.0%
TTAAGCTGCTGATGTCTTCA+AGG - chr1_2:7453105-7453124 Msa0053040:CDS 40.0%
! ACTAGTCTATCGTGATGCTT+TGG + chr1_2:7453437-7453456 None:intergenic 40.0%
ATAGACTAGTGAAACTGCAG+CGG - chr1_2:7453447-7453466 Msa0053040:intron 40.0%
CGGTTGTGTTTATGCGTTAA+AGG - chr1_2:7453573-7453592 Msa0053040:intron 40.0%
AAGAGGTTGCATCAATTGTG+TGG - chr1_2:7453874-7453893 Msa0053040:intron 40.0%
CAAAGAAGTTTCCTTCCTCT+AGG - chr1_2:7453958-7453977 Msa0053040:CDS 40.0%
!! AGTTTTGTGGTTTCTTCTGC+AGG + chr1_2:7454013-7454032 None:intergenic 40.0%
GCAGAAGAAACCACAAAACT+TGG - chr1_2:7454013-7454032 Msa0053040:CDS 40.0%
AACTTGGAGTATATGGACAG+TGG - chr1_2:7454029-7454048 Msa0053040:CDS 40.0%
!!! TCTCCTCAAGGGCATTCTTT+TGG + chr1_2:7452534-7452553 None:intergenic 45.0%
!! TTGACCACTGATTTGAAGCC+GGG - chr1_2:7452895-7452914 Msa0053040:intron 45.0%
CAGGCGAAGCAAAGAGAATA+AGG - chr1_2:7453542-7453561 Msa0053040:intron 45.0%
AACCACATGTCCAACGAGTA+TGG - chr1_2:7453599-7453618 Msa0053040:intron 45.0%
AACCATACTCGTTGGACATG+TGG + chr1_2:7453604-7453623 None:intergenic 45.0%
CTGGTGTAGCAATAACACCA+TGG + chr1_2:7453690-7453709 None:intergenic 45.0%
GGTTGCATCAATTGTGTGGA+TGG - chr1_2:7453878-7453897 Msa0053040:intron 45.0%
CAATCATCTACCCTAGAGGA+AGG + chr1_2:7453972-7453991 None:intergenic 45.0%
GTGGTTTCTTCTGCAGGAAA+TGG + chr1_2:7454007-7454026 None:intergenic 45.0%
!!! TCTCCTCAAGGGCATTCTTT+TGG + chr1_2:7452534-7452553 None:intergenic 45.0%
!! TTGACCACTGATTTGAAGCC+GGG - chr1_2:7452895-7452914 Msa0053040:intron 45.0%
CAGGCGAAGCAAAGAGAATA+AGG - chr1_2:7453542-7453561 Msa0053040:intron 45.0%
AACCACATGTCCAACGAGTA+TGG - chr1_2:7453599-7453618 Msa0053040:intron 45.0%
AACCATACTCGTTGGACATG+TGG + chr1_2:7453604-7453623 None:intergenic 45.0%
CTGGTGTAGCAATAACACCA+TGG + chr1_2:7453690-7453709 None:intergenic 45.0%
GGTTGCATCAATTGTGTGGA+TGG - chr1_2:7453878-7453897 Msa0053040:intron 45.0%
CAATCATCTACCCTAGAGGA+AGG + chr1_2:7453972-7453991 None:intergenic 45.0%
GTGGTTTCTTCTGCAGGAAA+TGG + chr1_2:7454007-7454026 None:intergenic 45.0%
GGTGAAGAGAAGCAGCATCT+TGG + chr1_2:7451807-7451826 None:intergenic 50.0%
! AGATGCTGCTTCTCTTCACC+AGG - chr1_2:7451807-7451826 Msa0053040:CDS 50.0%
GAGCCAAAAGAATGCCCTTG+AGG - chr1_2:7452528-7452547 Msa0053040:intron 50.0%
CAATCCCGGCTTCAAATCAG+TGG + chr1_2:7452902-7452921 None:intergenic 50.0%
CATTGGGCAACCATACTCGT+TGG + chr1_2:7453612-7453631 None:intergenic 50.0%
TTGCCCAATGAGAACTACCC+TGG - chr1_2:7453622-7453641 Msa0053040:intron 50.0%
AGGCCAGGGTAGTTCTCATT+GGG + chr1_2:7453628-7453647 None:intergenic 50.0%
TAGGCCAGGGTAGTTCTCAT+TGG + chr1_2:7453629-7453648 None:intergenic 50.0%
CTAGCCATGTCTCGAGCTTT+CGG - chr1_2:7453646-7453665 Msa0053040:intron 50.0%
ATCTCCGAAAGCTCGAGACA+TGG + chr1_2:7453653-7453672 None:intergenic 50.0%
GTGGATGGTAGAGAGTGAAG+AGG - chr1_2:7453893-7453912 Msa0053040:CDS 50.0%
AGAGTGAAGAGGAAGCTGCA+AGG - chr1_2:7453904-7453923 Msa0053040:CDS 50.0%
GAGTGAAGAGGAAGCTGCAA+GGG - chr1_2:7453905-7453924 Msa0053040:CDS 50.0%
GGTGCAATCATCTACCCTAG+AGG + chr1_2:7453976-7453995 None:intergenic 50.0%
TAGGGTAGATGATTGCACCG+TGG - chr1_2:7453977-7453996 Msa0053040:CDS 50.0%
CTGCAGGAAATGGCAAACCA+CGG + chr1_2:7453997-7454016 None:intergenic 50.0%
GGTGAAGAGAAGCAGCATCT+TGG + chr1_2:7451807-7451826 None:intergenic 50.0%
! AGATGCTGCTTCTCTTCACC+AGG - chr1_2:7451807-7451826 Msa0053040:CDS 50.0%
GAGCCAAAAGAATGCCCTTG+AGG - chr1_2:7452528-7452547 Msa0053040:intron 50.0%
CAATCCCGGCTTCAAATCAG+TGG + chr1_2:7452902-7452921 None:intergenic 50.0%
CATTGGGCAACCATACTCGT+TGG + chr1_2:7453612-7453631 None:intergenic 50.0%
TTGCCCAATGAGAACTACCC+TGG - chr1_2:7453622-7453641 Msa0053040:intron 50.0%
AGGCCAGGGTAGTTCTCATT+GGG + chr1_2:7453628-7453647 None:intergenic 50.0%
TAGGCCAGGGTAGTTCTCAT+TGG + chr1_2:7453629-7453648 None:intergenic 50.0%
CTAGCCATGTCTCGAGCTTT+CGG - chr1_2:7453646-7453665 Msa0053040:intron 50.0%
ATCTCCGAAAGCTCGAGACA+TGG + chr1_2:7453653-7453672 None:intergenic 50.0%
GTGGATGGTAGAGAGTGAAG+AGG - chr1_2:7453893-7453912 Msa0053040:CDS 50.0%
AGAGTGAAGAGGAAGCTGCA+AGG - chr1_2:7453904-7453923 Msa0053040:CDS 50.0%
GAGTGAAGAGGAAGCTGCAA+GGG - chr1_2:7453905-7453924 Msa0053040:CDS 50.0%
GGTGCAATCATCTACCCTAG+AGG + chr1_2:7453976-7453995 None:intergenic 50.0%
TAGGGTAGATGATTGCACCG+TGG - chr1_2:7453977-7453996 Msa0053040:CDS 50.0%
CTGCAGGAAATGGCAAACCA+CGG + chr1_2:7453997-7454016 None:intergenic 50.0%
CGAAAGCTCGAGACATGGCT+AGG + chr1_2:7453648-7453667 None:intergenic 55.0%
CTTCTTTGCCCATGCAGCTG+TGG + chr1_2:7453946-7453965 None:intergenic 55.0%
CGAAAGCTCGAGACATGGCT+AGG + chr1_2:7453648-7453667 None:intergenic 55.0%
CTTCTTTGCCCATGCAGCTG+TGG + chr1_2:7453946-7453965 None:intergenic 55.0%
CTCGAGACATGGCTAGGCCA+GGG + chr1_2:7453642-7453661 None:intergenic 60.0%
AGAGGAAGCTGCAAGGGCAG+TGG - chr1_2:7453911-7453930 Msa0053040:CDS 60.0%
TGGAAGCAGCCACAGCTGCA+TGG - chr1_2:7453934-7453953 Msa0053040:CDS 60.0%
GGAAGCAGCCACAGCTGCAT+GGG - chr1_2:7453935-7453954 Msa0053040:CDS 60.0%
CTCGAGACATGGCTAGGCCA+GGG + chr1_2:7453642-7453661 None:intergenic 60.0%
AGAGGAAGCTGCAAGGGCAG+TGG - chr1_2:7453911-7453930 Msa0053040:CDS 60.0%
TGGAAGCAGCCACAGCTGCA+TGG - chr1_2:7453934-7453953 Msa0053040:CDS 60.0%
GGAAGCAGCCACAGCTGCAT+GGG - chr1_2:7453935-7453954 Msa0053040:CDS 60.0%
GCTCGAGACATGGCTAGGCC+AGG + chr1_2:7453643-7453662 None:intergenic 65.0%
GGAAGCTGCAAGGGCAGTGG+TGG - chr1_2:7453914-7453933 Msa0053040:CDS 65.0%
GCTCGAGACATGGCTAGGCC+AGG + chr1_2:7453643-7453662 None:intergenic 65.0%
GGAAGCTGCAAGGGCAGTGG+TGG - chr1_2:7453914-7453933 Msa0053040:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 7451652 7454064 7451652 ID=Msa0053040;Name=Msa0053040
chr1_2 mRNA 7451652 7454064 7451652 ID=Msa0053040-mRNA-1;Parent=Msa0053040;Name=Msa0053040-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|5|0|344
chr1_2 exon 7453888 7454064 7453888 ID=Msa0053040-mRNA-1:exon:2535;Parent=Msa0053040-mRNA-1
chr1_2 exon 7452990 7453295 7452990 ID=Msa0053040-mRNA-1:exon:2534;Parent=Msa0053040-mRNA-1
chr1_2 exon 7452791 7452905 7452791 ID=Msa0053040-mRNA-1:exon:2533;Parent=Msa0053040-mRNA-1
chr1_2 exon 7451948 7452171 7451948 ID=Msa0053040-mRNA-1:exon:2532;Parent=Msa0053040-mRNA-1
chr1_2 exon 7451652 7451864 7451652 ID=Msa0053040-mRNA-1:exon:2531;Parent=Msa0053040-mRNA-1
chr1_2 CDS 7453888 7454064 7453888 ID=Msa0053040-mRNA-1:cds;Parent=Msa0053040-mRNA-1
chr1_2 CDS 7452990 7453295 7452990 ID=Msa0053040-mRNA-1:cds;Parent=Msa0053040-mRNA-1
chr1_2 CDS 7452791 7452905 7452791 ID=Msa0053040-mRNA-1:cds;Parent=Msa0053040-mRNA-1
chr1_2 CDS 7451948 7452171 7451948 ID=Msa0053040-mRNA-1:cds;Parent=Msa0053040-mRNA-1
chr1_2 CDS 7451652 7451864 7451652 ID=Msa0053040-mRNA-1:cds;Parent=Msa0053040-mRNA-1
Gene Sequence

>Msa0053040

ATGGGTATCTGCATATCCGTTGCATCTTCAGAGATTCATGGAATCCCTCAAGTTCATGATGAGAATGTCATGATATTTGAAGCAAGCAAGGTCCAAAATGAGACTAAGAGACTTTGCTCCGTTTACTCTAAACAAGGTACTAAGGGTCTCAACCAAGATGCTGCTTCTCTTCACCAGGATTATGGGATGAAAGATGGAGCATTTTGTGGTGTTTATGATGGACATGGAAAAAATGGACATATAGTGAGCAAAATAGTAAACAATACTTTACCATCTCTCATTTTGAGCCAAAAGAATGCCCTTGAGGAGATTAATACAACAAAAAATGGTGTTGACAACAAACAAAACAAATTTTCAAACAACTATCTAAGATGGAAAGAAGCTATTCTTGGAGCTTTCAATGTAATGGATGAAGAGGTGAAGCAACAAGAGAATCTAGATTGTTCTTGTAGTGGAACTACTGCTGTAGTTGTCATAAGACAGGGTGAAGGTCTTATCATAGTTAACCTTGGTGACTCAAGAGCAATATTAGGAACAATCCAAGATGAAAAACTAAAAGCCATTCAATTGACCACTGATTTGAAGCCGGGATTGCCTTGCGAAGCAAAGAGAATAAGGAGTTGCAACGGTTGTGTTTATGCGTTAAAGGAAGAACCACATGTCCAACGAGTATGGTTGCCCAATGAGAACTACCCTGGCCTAGCCATGTCTCGAGCTTTCGGAGATTTCATACTTAAAGACCATGGTGTTATTGCTACACCAGATATTTGGTATCACCGTTTAACATCAAGTGACCAATTTATTGTTCTTGCAAGTGATGGGGTGTGGGATGTACTAAGTAATGAAGAGGTTGCATCAATTGTGTGGATGGTAGAGAGTGAAGAGGAAGCTGCAAGGGCAGTGGTGGAAGCAGCCACAGCTGCATGGGCAAAGAAGTTTCCTTCCTCTAGGGTAGATGATTGCACCGTGGTTTGCCATTTCCTGCAGAAGAAACCACAAAACTTGGAGTATATGGACAGTGGAAAATTAGGTTAA

Protein sequence

>Msa0053040

MGICISVASSEIHGIPQVHDENVMIFEASKVQNETKRLCSVYSKQGTKGLNQDAASLHQDYGMKDGAFCGVYDGHGKNGHIVSKIVNNTLPSLILSQKNALEEINTTKNGVDNKQNKFSNNYLRWKEAILGAFNVMDEEVKQQENLDCSCSGTTAVVVIRQGEGLIIVNLGDSRAILGTIQDEKLKAIQLTTDLKPGLPCEAKRIRSCNGCVYALKEEPHVQRVWLPNENYPGLAMSRAFGDFILKDHGVIATPDIWYHRLTSSDQFIVLASDGVWDVLSNEEVASIVWMVESEEEAARAVVEAATAAWAKKFPSSRVDDCTVVCHFLQKKPQNLEYMDSGKLG*