Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313620 | XP_003593727.1 | 96.708 | 243 | 8 | 0 | 1 | 243 | 1 | 243 | 2.65e-176 | 494 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313620 | sp|Q6NMR9|GDL84_ARATH | 68.880 | 241 | 68 | 2 | 4 | 242 | 3 | 238 | 2.63e-121 | 348 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004590 | Msa0313620 | 0.807120 | 5.904191e-50 | -8.615850e-47 |
| Msa0012800 | Msa0313620 | 0.805813 | 1.113781e-49 | -8.615850e-47 |
| Msa0017710 | Msa0313620 | 0.813614 | 2.341234e-51 | -8.615850e-47 |
| Msa0024650 | Msa0313620 | 0.811334 | 7.375760e-51 | -8.615850e-47 |
| Msa0045620 | Msa0313620 | 0.821509 | 3.888182e-53 | -8.615850e-47 |
| Msa0102920 | Msa0313620 | 0.808443 | 3.089906e-50 | -8.615850e-47 |
| Msa0121320 | Msa0313620 | 0.807799 | 4.237447e-50 | -8.615850e-47 |
| Msa0130360 | Msa0313620 | 0.828892 | 6.981394e-55 | -8.615850e-47 |
| Msa0132080 | Msa0313620 | -0.809068 | 2.271093e-50 | -8.615850e-47 |
| Msa0136090 | Msa0313620 | 0.816814 | 4.554133e-52 | -8.615850e-47 |
| Msa0137010 | Msa0313620 | -0.812532 | 4.043699e-51 | -8.615850e-47 |
| Msa0147680 | Msa0313620 | 0.809785 | 1.593361e-50 | -8.615850e-47 |
| Msa0168380 | Msa0313620 | 0.804704 | 1.901257e-49 | -8.615850e-47 |
| Msa0183920 | Msa0313620 | 0.801890 | 7.272183e-49 | -8.615850e-47 |
| Msa0186510 | Msa0313620 | -0.806171 | 9.363306e-50 | -8.615850e-47 |
| Msa0192830 | Msa0313620 | 0.927722 | 7.907624e-92 | -8.615850e-47 |
| Msa0196260 | Msa0313620 | 0.825842 | 3.758777e-54 | -8.615850e-47 |
| Msa0206370 | Msa0313620 | 0.846025 | 2.813624e-59 | -8.615850e-47 |
| Msa0211460 | Msa0313620 | 0.802913 | 4.476764e-49 | -8.615850e-47 |
| Msa0218060 | Msa0313620 | 0.810253 | 1.263831e-50 | -8.615850e-47 |
| Msa0235080 | Msa0313620 | 0.945308 | 3.891480e-104 | -8.615850e-47 |
| Msa0244310 | Msa0313620 | 0.833047 | 6.674098e-56 | -8.615850e-47 |
| Msa0260980 | Msa0313620 | 0.828436 | 9.001898e-55 | -8.615850e-47 |
| Msa0273360 | Msa0313620 | 0.956963 | 8.492614e-115 | -8.615850e-47 |
| Msa0307630 | Msa0313620 | 0.806912 | 6.533712e-50 | -8.615850e-47 |
| Msa0313620 | Msa0316720 | -0.804319 | 2.287442e-49 | -8.615850e-47 |
| Msa0313620 | Msa0336430 | 0.856787 | 2.540303e-62 | -8.615850e-47 |
| Msa0313620 | Msa0336460 | 0.867903 | 9.711413e-66 | -8.615850e-47 |
| Msa0313620 | Msa0336520 | 0.871106 | 8.797937e-67 | -8.615850e-47 |
| Msa0313620 | Msa0349930 | 0.817162 | 3.804519e-52 | -8.615850e-47 |
| Msa0313620 | Msa0369430 | -0.806879 | 6.638601e-50 | -8.615850e-47 |
| Msa0313620 | Msa0372100 | 0.810247 | 1.267531e-50 | -8.615850e-47 |
| Msa0313620 | Msa0391600 | 0.800207 | 1.605714e-48 | -8.615850e-47 |
| Msa0313620 | Msa0422900 | 0.813403 | 2.605573e-51 | -8.615850e-47 |
| Msa0313620 | Msa0430040 | -0.802102 | 6.579813e-49 | -8.615850e-47 |
| Msa0313620 | Msa0444200 | 0.826989 | 2.004225e-54 | -8.615850e-47 |
| Msa0313620 | Msa0471130 | -0.800530 | 1.380086e-48 | -8.615850e-47 |
| Msa0313620 | Msa0481670 | 0.814871 | 1.235263e-51 | -8.615850e-47 |
| Msa0313620 | Msa0487100 | 0.803214 | 3.878753e-49 | -8.615850e-47 |
| Msa0313620 | Msa0530660 | 0.853007 | 3.176645e-61 | -8.615850e-47 |
| Msa0313620 | Msa0531040 | 0.820290 | 7.418242e-53 | -8.615850e-47 |
| Msa0313620 | Msa0549170 | 0.811572 | 6.546034e-51 | -8.615850e-47 |
| Msa0313620 | Msa0549960 | 0.800079 | 1.705169e-48 | -8.615850e-47 |
| Msa0313620 | Msa0561830 | 0.818744 | 1.670678e-52 | -8.615850e-47 |
| Msa0313620 | Msa0567330 | 0.802639 | 5.099114e-49 | -8.615850e-47 |
| Msa0313620 | Msa0567570 | 0.823215 | 1.561898e-53 | -8.615850e-47 |
| Msa0313620 | Msa0568460 | -0.807975 | 3.885992e-50 | -8.615850e-47 |
| Msa0313620 | Msa0576320 | 0.801946 | 7.081387e-49 | -8.615850e-47 |
| Msa0313620 | Msa0584970 | 0.814388 | 1.579944e-51 | -8.615850e-47 |
| Msa0313620 | Msa0587180 | 0.853501 | 2.291821e-61 | -8.615850e-47 |
| Msa0313620 | Msa0587930 | 0.805692 | 1.180984e-49 | -8.615850e-47 |
| Msa0313620 | Msa0589460 | 0.809447 | 1.883558e-50 | -8.615850e-47 |
| Msa0313620 | Msa0604280 | 0.800303 | 1.535214e-48 | -8.615850e-47 |
| Msa0313620 | Msa0605470 | 0.810164 | 1.320486e-50 | -8.615850e-47 |
| Msa0313620 | Msa0605480 | 0.822031 | 2.943439e-53 | -8.615850e-47 |
| Msa0313620 | Msa0612880 | -0.801893 | 7.264161e-49 | -8.615850e-47 |
| Msa0313620 | Msa0623310 | 0.840966 | 6.321688e-58 | -8.615850e-47 |
| Msa0313620 | Msa0626980 | 0.850948 | 1.220028e-60 | -8.615850e-47 |
| Msa0313620 | Msa0627360 | 0.855875 | 4.702047e-62 | -8.615850e-47 |
| Msa0313620 | Msa0629720 | 0.817737 | 2.823483e-52 | -8.615850e-47 |
| Msa0313620 | Msa0646010 | 0.801582 | 8.412839e-49 | -8.615850e-47 |
| Msa0313620 | Msa0646440 | 0.813771 | 2.162184e-51 | -8.615850e-47 |
| Msa0313620 | Msa0655370 | 0.824464 | 7.959693e-54 | -8.615850e-47 |
| Msa0313620 | Msa0663290 | 0.812546 | 4.015657e-51 | -8.615850e-47 |
| Msa0313620 | Msa0667600 | 0.813151 | 2.959610e-51 | -8.615850e-47 |
| Msa0313620 | Msa0673940 | 0.870409 | 1.491730e-66 | -8.615850e-47 |
| Msa0313620 | Msa0676200 | 0.853052 | 3.082077e-61 | -8.615850e-47 |
| Msa0313620 | Msa0685390 | -0.806775 | 6.981450e-50 | -8.615850e-47 |
| Msa0313620 | Msa0705050 | -0.820567 | 6.405830e-53 | -8.615850e-47 |
| Msa0313620 | Msa0708020 | 0.845063 | 5.130723e-59 | -8.615850e-47 |
| Msa0313620 | Msa0726520 | 0.822122 | 2.804600e-53 | -8.615850e-47 |
| Msa0313620 | Msa0727480 | 0.809118 | 2.216245e-50 | -8.615850e-47 |
| Msa0313620 | Msa0732970 | 0.811574 | 6.539647e-51 | -8.615850e-47 |
| Msa0313620 | Msa0758150 | 0.819805 | 9.578895e-53 | -8.615850e-47 |
| Msa0313620 | Msa0761830 | 0.835628 | 1.502586e-56 | -8.615850e-47 |
| Msa0313620 | Msa0766860 | 0.812095 | 5.038160e-51 | -8.615850e-47 |
| Msa0313620 | Msa0768720 | 0.804083 | 2.560420e-49 | -8.615850e-47 |
| Msa0313620 | Msa0792410 | 0.804304 | 2.304009e-49 | -8.615850e-47 |
| Msa0313620 | Msa0804170 | 0.807762 | 4.313645e-50 | -8.615850e-47 |
| Msa0313620 | Msa0813630 | -0.802796 | 4.733701e-49 | -8.615850e-47 |
| Msa0313620 | Msa0817100 | 0.811325 | 7.406876e-51 | -8.615850e-47 |
| Msa0313620 | Msa0831820 | 0.800094 | 1.693683e-48 | -8.615850e-47 |
| Msa0313620 | Msa0842180 | 0.822496 | 2.296922e-53 | -8.615850e-47 |
| Msa0313620 | Msa0871420 | 0.824022 | 1.010697e-53 | -8.615850e-47 |
| Msa0313620 | Msa0876630 | 0.812058 | 5.131071e-51 | -8.615850e-47 |
| Msa0313620 | Msa0880850 | 0.801369 | 9.299836e-49 | -8.615850e-47 |
| Msa0313620 | Msa0896920 | 0.812389 | 4.344308e-51 | -8.615850e-47 |
| Msa0313620 | Msa0902340 | 0.822445 | 2.360374e-53 | -8.615850e-47 |
| Msa0313620 | Msa0936630 | 0.811054 | 8.483033e-51 | -8.615850e-47 |
| Msa0313620 | Msa0941150 | -0.801963 | 7.026580e-49 | -8.615850e-47 |
| Msa0313620 | Msa0962290 | 0.811162 | 8.036717e-51 | -8.615850e-47 |
| Msa0313620 | Msa0970270 | 0.803642 | 3.163094e-49 | -8.615850e-47 |
| Msa0313620 | Msa0978980 | 0.822659 | 2.104154e-53 | -8.615850e-47 |
| Msa0313620 | Msa1007930 | 0.809470 | 1.862892e-50 | -8.615850e-47 |
| Msa0313620 | Msa1026710 | 0.801141 | 1.035510e-48 | -8.615850e-47 |
| Msa0313620 | Msa1036020 | 0.830517 | 2.809032e-55 | -8.615850e-47 |
| Msa0313620 | Msa1040330 | 0.806378 | 8.468997e-50 | -8.615850e-47 |
| Msa0313620 | Msa1042300 | 0.842836 | 2.027508e-58 | -8.615850e-47 |
| Msa0313620 | Msa1061670 | 0.800961 | 1.127511e-48 | -8.615850e-47 |
| Msa0313620 | Msa1076280 | 0.803593 | 3.237744e-49 | -8.615850e-47 |
| Msa0313620 | Msa1085560 | 0.809323 | 2.002332e-50 | -8.615850e-47 |
| Msa0313620 | Msa1103450 | 0.807249 | 5.543780e-50 | -8.615850e-47 |
| Msa0313620 | Msa1127200 | 0.820576 | 6.377555e-53 | -8.615850e-47 |
| Msa0313620 | Msa1130770 | 0.811438 | 7.000758e-51 | -8.615850e-47 |
| Msa0313620 | Msa1133440 | -0.804982 | 1.662773e-49 | -8.615850e-47 |
| Msa0313620 | Msa1150860 | 0.805662 | 1.198257e-49 | -8.615850e-47 |
| Msa0313620 | Msa1160540 | 0.807546 | 4.794415e-50 | -8.615850e-47 |
| Msa0313620 | Msa1183870 | 0.815240 | 1.023296e-51 | -8.615850e-47 |
| Msa0313620 | Msa1186260 | 0.802147 | 6.441222e-49 | -8.615850e-47 |
| Msa0313620 | Msa1186670 | 0.808693 | 2.731520e-50 | -8.615850e-47 |
| Msa0313620 | Msa1187750 | 0.816764 | 4.674786e-52 | -8.615850e-47 |
| Msa0313620 | Msa1191270 | 0.805263 | 1.452151e-49 | -8.615850e-47 |
| Msa0313620 | Msa1211160 | 0.806069 | 9.839987e-50 | -8.615850e-47 |
| Msa0313620 | Msa1211260 | -0.800365 | 1.491117e-48 | -8.615850e-47 |
| Msa0313620 | Msa1211320 | 0.808457 | 3.067911e-50 | -8.615850e-47 |
| Msa0313620 | Msa1216370 | 0.810014 | 1.422481e-50 | -8.615850e-47 |
| Msa0313620 | Msa1217890 | 0.823909 | 1.074393e-53 | -8.615850e-47 |
| Msa0313620 | Msa1220720 | 0.826445 | 2.702038e-54 | -8.615850e-47 |
| Msa0313620 | Msa1223620 | 0.800765 | 1.236266e-48 | -8.615850e-47 |
| Msa0313620 | Msa1231440 | 0.819365 | 1.206681e-52 | -8.615850e-47 |
| Msa0313620 | Msa1233640 | 0.823997 | 1.024471e-53 | -8.615850e-47 |
| Msa0313620 | Msa1243630 | -0.802498 | 5.453018e-49 | -8.615850e-47 |
| Msa0313620 | Msa1253270 | 0.801637 | 8.195662e-49 | -8.615850e-47 |
| Msa0313620 | Msa1255710 | 0.871152 | 8.495388e-67 | -8.615850e-47 |
| Msa0313620 | Msa1265570 | 0.828134 | 1.064062e-54 | -8.615850e-47 |
| Msa0313620 | Msa1273320 | 0.831362 | 1.743109e-55 | -8.615850e-47 |
| Msa0313620 | Msa1275840 | 0.801295 | 9.633491e-49 | -8.615850e-47 |
| Msa0313620 | Msa1278000 | 0.812868 | 3.414386e-51 | -8.615850e-47 |
| Msa0313620 | Msa1288970 | -0.802143 | 6.451325e-49 | -8.615850e-47 |
| Msa0313620 | Msa1296860 | 0.811463 | 6.912882e-51 | -8.615850e-47 |
| Msa0313620 | Msa1314020 | 0.806152 | 9.450745e-50 | -8.615850e-47 |
| Msa0313620 | Msa1314040 | 0.820308 | 7.345227e-53 | -8.615850e-47 |
| Msa0313620 | Msa1321010 | 0.805621 | 1.221734e-49 | -8.615850e-47 |
| Msa0313620 | Msa1321490 | 0.820297 | 7.387995e-53 | -8.615850e-47 |
| Msa0313620 | Msa1334670 | 0.827553 | 1.468407e-54 | -8.615850e-47 |
| Msa0313620 | Msa1335200 | -0.807241 | 5.564635e-50 | -8.615850e-47 |
| Msa0313620 | Msa1349850 | -0.802453 | 5.571468e-49 | -8.615850e-47 |
| Msa0313620 | Msa1357490 | 0.812031 | 5.201858e-51 | -8.615850e-47 |
| Msa0313620 | Msa1362590 | 0.865814 | 4.494613e-65 | -8.615850e-47 |
| Msa0313620 | Msa1363690 | 0.830824 | 2.362986e-55 | -8.615850e-47 |
| Msa0313620 | Msa1365230 | 0.832223 | 1.068667e-55 | -8.615850e-47 |
| Msa0313620 | Msa1369400 | -0.805230 | 1.475767e-49 | -8.615850e-47 |
| Msa0313620 | Msa1371800 | 0.830594 | 2.689015e-55 | -8.615850e-47 |
| Msa0313620 | Msa1372030 | 0.822595 | 2.177498e-53 | -8.615850e-47 |
| Msa0313620 | Msa1373560 | 0.805911 | 1.061854e-49 | -8.615850e-47 |
| Msa0313620 | Msa1376310 | 0.833977 | 3.911380e-56 | -8.615850e-47 |
| Msa0313620 | Msa1377190 | 0.811708 | 6.116253e-51 | -8.615850e-47 |
| Msa0313620 | Msa1377520 | 0.801395 | 9.188935e-49 | -8.615850e-47 |
| Msa0313620 | Msa1378400 | 0.806542 | 7.821550e-50 | -8.615850e-47 |
| Msa0313620 | Msa1378950 | 0.817816 | 2.710124e-52 | -8.615850e-47 |
| Msa0313620 | Msa1385570 | 0.805867 | 1.084927e-49 | -8.615850e-47 |
| Msa0313620 | Msa1396550 | 0.820938 | 5.263744e-53 | -8.615850e-47 |
| Msa0313620 | Msa1407670 | 0.811375 | 7.224642e-51 | -8.615850e-47 |
| Msa0313620 | Msa1407810 | 0.811767 | 5.936976e-51 | -8.615850e-47 |
| Msa0313620 | Msa1409600 | 0.808042 | 3.761483e-50 | -8.615850e-47 |
| Msa0313620 | Msa1413020 | 0.808634 | 2.813116e-50 | -8.615850e-47 |
| Msa0313620 | Msa1413900 | -0.801507 | 8.717549e-49 | -8.615850e-47 |
| Msa0313620 | Msa1417220 | 0.808168 | 3.536753e-50 | -8.615850e-47 |
| Msa0313620 | Msa1417950 | 0.805974 | 1.029953e-49 | -8.615850e-47 |
| Msa0313620 | Msa1434700 | 0.811818 | 5.788552e-51 | -8.615850e-47 |
| Msa0313620 | Msa1437780 | 0.812638 | 3.833536e-51 | -8.615850e-47 |
| Msa0313620 | Msa1447900 | 0.809779 | 1.598496e-50 | -8.615850e-47 |
| Msa0313620 | Msa1449770 | 0.809188 | 2.141078e-50 | -8.615850e-47 |
| Msa0313620 | Msa1450630 | -0.801485 | 8.808196e-49 | -8.615850e-47 |
| Msa0313620 | Msa1451660 | 0.810985 | 8.778457e-51 | -8.615850e-47 |
| Msa0313620 | Msa1455360 | 0.810892 | 9.193837e-51 | -8.615850e-47 |
| Msa0313620 | Msa1459610 | 0.828985 | 6.630394e-55 | -8.615850e-47 |
| Msa0313620 | Msa1462610 | 0.805356 | 1.388646e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313620 | MtrunA17_Chr2g0283411 | 96.708 | 243 | 8 | 0 | 1 | 243 | 1 | 243 | 2.43e-180 | 494 |
| Msa0313620 | MtrunA17_Chr2g0283421 | 84.298 | 242 | 36 | 1 | 2 | 243 | 3 | 242 | 3.01e-156 | 433 |
| Msa0313620 | MtrunA17_Chr2g0283391 | 63.861 | 202 | 56 | 4 | 39 | 239 | 1 | 186 | 3.20e-80 | 240 |
| Msa0313620 | MtrunA17_Chr4g0059001 | 45.249 | 221 | 112 | 2 | 25 | 242 | 51 | 265 | 3.97e-58 | 185 |
| Msa0313620 | MtrunA17_Chr7g0242461 | 41.981 | 212 | 113 | 3 | 4 | 215 | 6 | 207 | 3.52e-54 | 175 |
| Msa0313620 | MtrunA17_Chr4g0006731 | 38.136 | 236 | 134 | 4 | 4 | 235 | 6 | 233 | 8.52e-52 | 169 |
| Msa0313620 | MtrunA17_Chr7g0242451 | 38.075 | 239 | 134 | 4 | 4 | 238 | 6 | 234 | 1.41e-50 | 165 |
| Msa0313620 | MtrunA17_Chr7g0242401 | 38.318 | 214 | 122 | 4 | 2 | 215 | 31 | 234 | 9.83e-48 | 159 |
| Msa0313620 | MtrunA17_Chr7g0242431 | 37.850 | 214 | 123 | 4 | 2 | 215 | 30 | 233 | 5.32e-46 | 154 |
| Msa0313620 | MtrunA17_Chr7g0242391 | 34.694 | 245 | 140 | 5 | 4 | 239 | 2 | 235 | 1.14e-43 | 148 |
| Msa0313620 | MtrunA17_Chr7g0242411 | 37.089 | 213 | 118 | 7 | 4 | 215 | 2 | 199 | 1.86e-43 | 147 |
| Msa0313620 | MtrunA17_Chr3g0113401 | 36.449 | 214 | 124 | 5 | 4 | 215 | 6 | 209 | 1.25e-42 | 145 |
| Msa0313620 | MtrunA17_Chr7g0242441 | 50.847 | 59 | 28 | 1 | 4 | 62 | 3 | 60 | 2.14e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313620 | AT5G45920.1 | 68.880 | 241 | 68 | 2 | 4 | 242 | 3 | 238 | 2.68e-122 | 348 |
| Msa0313620 | AT5G45920.4 | 68.880 | 241 | 68 | 2 | 4 | 242 | 3 | 238 | 2.68e-122 | 348 |
| Msa0313620 | AT5G45920.2 | 72.043 | 186 | 45 | 2 | 4 | 187 | 3 | 183 | 1.97e-96 | 280 |
| Msa0313620 | AT5G45920.3 | 72.043 | 186 | 45 | 2 | 4 | 187 | 3 | 183 | 1.97e-96 | 280 |
| Msa0313620 | AT5G62930.1 | 52.066 | 242 | 107 | 2 | 4 | 242 | 2 | 237 | 2.30e-83 | 249 |
| Msa0313620 | AT5G62930.2 | 52.066 | 242 | 107 | 2 | 4 | 242 | 28 | 263 | 8.18e-83 | 248 |
| Msa0313620 | AT5G62930.3 | 49.438 | 178 | 87 | 1 | 68 | 242 | 2 | 179 | 8.28e-54 | 172 |
| Msa0313620 | AT2G38180.1 | 38.627 | 233 | 129 | 4 | 4 | 232 | 6 | 228 | 1.02e-47 | 160 |
| Msa0313620 | AT3G11210.1 | 35.246 | 244 | 139 | 6 | 4 | 241 | 6 | 236 | 1.62e-45 | 153 |
Find 71 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACTACAGAAATGCCTTTA+AGG | 0.118994 | 2_4:+9071546 | None:intergenic |
| GCAGCTTCATTAGTCCTTTC+AGG | 0.209931 | 2_4:+9072074 | None:intergenic |
| TGACCCTAATGACCCCTTAA+AGG | 0.261070 | 2_4:-9071560 | Msa0313620:CDS |
| GTCAGGGAACTGTTGCATTT+TGG | 0.294369 | 2_4:+9071983 | None:intergenic |
| CTCCATTGTCTCCTTCTTCA+AGG | 0.304012 | 2_4:-9073374 | Msa0313620:intron |
| AATGCCTTTAAGGGGTCATT+AGG | 0.307170 | 2_4:+9071556 | None:intergenic |
| TTAGTCATGTTTGAAAGAAA+TGG | 0.322849 | 2_4:+9074205 | None:intergenic |
| TCCTTTGATGTTGGAGGATG+GGG | 0.334235 | 2_4:-9074139 | Msa0313620:CDS |
| CAATGCAATCGGAGCAGTTT+CGG | 0.373492 | 2_4:+9073489 | None:intergenic |
| TACTACAGAAATGCCTTTAA+GGG | 0.399937 | 2_4:+9071547 | None:intergenic |
| ATGCCTTTAAGGGGTCATTA+GGG | 0.414468 | 2_4:+9071557 | None:intergenic |
| GTCCTTTCAGGAAGACCCTC+TGG | 0.415276 | 2_4:+9072086 | None:intergenic |
| CCCTCTGGATTATTCTCAAA+TGG | 0.419053 | 2_4:+9072101 | None:intergenic |
| TTCTTTCAAACATGACTAAG+AGG | 0.439390 | 2_4:-9074201 | Msa0313620:exon |
| ATATTCCTTACATTGATCTC+TGG | 0.444800 | 2_4:-9072007 | Msa0313620:CDS |
| GAGTCGTGCAACTTCATCAA+TGG | 0.457432 | 2_4:+9072260 | None:intergenic |
| TTGAAAAGCAGAGCATCTAC+TGG | 0.476943 | 2_4:+9073432 | None:intergenic |
| ATCCTTTGATGTTGGAGGAT+GGG | 0.480890 | 2_4:-9074140 | Msa0313620:CDS |
| AAATGCAACAGTTCCCTGAC+TGG | 0.492869 | 2_4:-9071980 | Msa0313620:CDS |
| ATGAGGATGACTTTACTTGT+CGG | 0.494758 | 2_4:+9072294 | None:intergenic |
| AGTCGTGCAACTTCATCAAT+GGG | 0.507323 | 2_4:+9072261 | None:intergenic |
| AAGAAAACAGTCAATGCAAT+CGG | 0.513354 | 2_4:+9073478 | None:intergenic |
| CAGGCAGATGTGGTGCTAAG+AGG | 0.513358 | 2_4:-9073592 | Msa0313620:CDS |
| ACTGAGGAATCCTTTGATGT+TGG | 0.516117 | 2_4:-9074148 | Msa0313620:CDS |
| AGGCAGATGTGGTGCTAAGA+GGG | 0.519656 | 2_4:-9073591 | Msa0313620:CDS |
| CAACACGAGGTGGGCACTGA+AGG | 0.520803 | 2_4:-9073557 | Msa0313620:CDS |
| TTGATGAAGTTGCACGACTC+AGG | 0.521821 | 2_4:-9072257 | Msa0313620:intron |
| CAATGGGAGGAGGAGTTATG+AGG | 0.526221 | 2_4:+9072277 | None:intergenic |
| AATCCTTTGATGTTGGAGGA+TGG | 0.530232 | 2_4:-9074141 | Msa0313620:CDS |
| TTGGTCCAGAGATCAATGTA+AGG | 0.532044 | 2_4:+9072002 | None:intergenic |
| CTGTCACCGCCTTGTGACAC+AGG | 0.536050 | 2_4:+9073517 | None:intergenic |
| TGAGAATGTAGTTATTGTAG+TGG | 0.537575 | 2_4:-9074284 | Msa0313620:five_prime_UTR |
| GAGGAATCCTTTGATGTTGG+AGG | 0.547556 | 2_4:-9074145 | Msa0313620:CDS |
| TTCTCCTTGTATTCATGTAG+AGG | 0.550295 | 2_4:+9073403 | None:intergenic |
| ATCCAGAGGGTCTTCCTGAA+AGG | 0.553423 | 2_4:-9072088 | Msa0313620:CDS |
| GTGGTGCTAAGAGGGTATAG+TGG | 0.556252 | 2_4:-9073583 | Msa0313620:CDS |
| TAGGGTCAATATCAGATACA+AGG | 0.556300 | 2_4:+9071575 | None:intergenic |
| CCTTTGAATTTCAGAAGCGA+TGG | 0.564667 | 2_4:-9072317 | Msa0313620:intron |
| ACCCCATCCTCCAACATCAA+AGG | 0.571101 | 2_4:+9074138 | None:intergenic |
| TCTCCTTGTATTCATGTAGA+GGG | 0.573844 | 2_4:+9073404 | None:intergenic |
| TGCCAACTATTTCTCACGCA+CGG | 0.583852 | 2_4:-9074107 | Msa0313620:intron |
| TACCGTGCGTGAGAAATAGT+TGG | 0.585214 | 2_4:+9074105 | None:intergenic |
| TGTCCCTCTACATGAATACA+AGG | 0.587200 | 2_4:-9073407 | Msa0313620:CDS |
| GGTATGGGTTACCTTGAAGA+AGG | 0.588405 | 2_4:+9073363 | None:intergenic |
| TGGTGCTAAGAGGGTATAGT+GGG | 0.591667 | 2_4:-9073582 | Msa0313620:CDS |
| ATGTTTGAAAGAAATGGAAG+AGG | 0.592455 | 2_4:+9074211 | None:intergenic |
| GAAAGGACTAATGAAGCTGC+TGG | 0.598460 | 2_4:-9072071 | Msa0313620:CDS |
| GACGGTTTGCATCTAACTAA+CGG | 0.606195 | 2_4:-9071682 | Msa0313620:CDS |
| GCAACTTCATCAATGGGAGG+AGG | 0.607044 | 2_4:+9072267 | None:intergenic |
| ACTACAGAAATGCCTTTAAG+GGG | 0.608956 | 2_4:+9071548 | None:intergenic |
| GTGTCACAAGGCGGTGACAG+TGG | 0.609656 | 2_4:-9073514 | Msa0313620:CDS |
| TGAAAAGCAGAGCATCTACT+GGG | 0.610569 | 2_4:+9073433 | None:intergenic |
| TACCTTGAAGAAGGAGACAA+TGG | 0.615115 | 2_4:+9073372 | None:intergenic |
| AGGGTCAATATCAGATACAA+GGG | 0.620846 | 2_4:+9071576 | None:intergenic |
| AGAAGGAGACAATGGAGCAA+AGG | 0.621194 | 2_4:+9073380 | None:intergenic |
| TGTTTGAAAGAAATGGAAGA+GGG | 0.624450 | 2_4:+9074212 | None:intergenic |
| GAGGTGGGCACTGAAGGTGT+TGG | 0.628300 | 2_4:-9073551 | Msa0313620:CDS |
| GTAAGGAATATGACATTCAG+TGG | 0.633665 | 2_4:+9072019 | None:intergenic |
| CCATTTGAGAATAATCCAGA+GGG | 0.637647 | 2_4:-9072101 | Msa0313620:CDS |
| TGTCACCGCCTTGTGACACA+GGG | 0.640635 | 2_4:+9073518 | None:intergenic |
| TGCTAGAGCATGCATTGCTG+TGG | 0.657710 | 2_4:-9072042 | Msa0313620:CDS |
| GGGTCAATATCAGATACAAG+GGG | 0.659677 | 2_4:+9071577 | None:intergenic |
| TAACATGTAACAGGCAGATG+TGG | 0.662178 | 2_4:-9073602 | Msa0313620:intron |
| GTTTGCATCTAACTAACGGA+GGG | 0.673924 | 2_4:-9071678 | Msa0313620:CDS |
| TCCATTTGAGAATAATCCAG+AGG | 0.677789 | 2_4:-9072102 | Msa0313620:CDS |
| CGTGCAACTTCATCAATGGG+AGG | 0.679277 | 2_4:+9072264 | None:intergenic |
| GGTATAGTGGGTACAACACG+AGG | 0.696277 | 2_4:-9073570 | Msa0313620:CDS |
| TAGTGGGTACAACACGAGGT+GGG | 0.715177 | 2_4:-9073566 | Msa0313620:CDS |
| GGTTTGCATCTAACTAACGG+AGG | 0.720069 | 2_4:-9071679 | Msa0313620:CDS |
| ATAGTGGGTACAACACGAGG+TGG | 0.732833 | 2_4:-9073567 | Msa0313620:CDS |
| GGTCAATATCAGATACAAGG+GGG | 0.748357 | 2_4:+9071578 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATCATATTACAATTT+GGG | + | chr2_4:9071901-9071920 | None:intergenic | 10.0% |
| !! | AAATAAATCATATTACAATT+TGG | + | chr2_4:9071902-9071921 | None:intergenic | 10.0% |
| !!! | ATATTTTTAATTTCAATTCT+AGG | - | chr2_4:9073471-9073490 | Msa0313620:CDS | 10.0% |
| !! | TATAAACAAAACATATAATG+TGG | + | chr2_4:9071841-9071860 | None:intergenic | 15.0% |
| !! | TGAATAAAATTAGAGTTTAA+TGG | - | chr2_4:9072520-9072539 | Msa0313620:intron | 15.0% |
| !! | GAATAAAATTAGAGTTTAAT+GGG | - | chr2_4:9072521-9072540 | Msa0313620:intron | 15.0% |
| !! | TTAAACATATAATTCTATAG+AGG | - | chr2_4:9073683-9073702 | Msa0313620:intron | 15.0% |
| !! | ATATCATTATTTAATGCATA+TGG | - | chr2_4:9074100-9074119 | Msa0313620:intron | 15.0% |
| !! | TATGATTTGATATGAATATA+CGG | - | chr2_4:9074123-9074142 | Msa0313620:CDS | 15.0% |
| !! | AAAATCTAAAAACAGAATGT+GGG | + | chr2_4:9072157-9072176 | None:intergenic | 20.0% |
| !! | TAAAATCTAAAAACAGAATG+TGG | + | chr2_4:9072158-9072177 | None:intergenic | 20.0% |
| !!! | AAGTTTGAATCTTTTTGTAA+TGG | - | chr2_4:9072183-9072202 | Msa0313620:intron | 20.0% |
| !!! | AGTTTGAATCTTTTTGTAAT+GGG | - | chr2_4:9072184-9072203 | Msa0313620:intron | 20.0% |
| !!! | AATTTTATTCAAACTCTGTA+CGG | + | chr2_4:9072511-9072530 | None:intergenic | 20.0% |
| !! | TTATCCTTAAATGTATATGT+AGG | - | chr2_4:9073429-9073448 | Msa0313620:CDS | 20.0% |
| !! | TATACCTACATATACATTTA+AGG | + | chr2_4:9073436-9073455 | None:intergenic | 20.0% |
| !! | AATTATACCATTTATACAAG+AGG | + | chr2_4:9073497-9073516 | None:intergenic | 20.0% |
| !! | ACTGGAAAAAAGTTTATTTA+AGG | - | chr2_4:9073887-9073906 | Msa0313620:intron | 20.0% |
| ! | TTAGTCATGTTTGAAAGAAA+TGG | + | chr2_4:9071647-9071666 | None:intergenic | 25.0% |
| ! | TCACCAAAAAGATATATTTG+TGG | + | chr2_4:9071674-9071693 | None:intergenic | 25.0% |
| !! | GTTTGAATCTTTTTGTAATG+GGG | - | chr2_4:9072185-9072204 | Msa0313620:intron | 25.0% |
| !!! | TCTTTTGAAAAGGATAAATG+AGG | - | chr2_4:9072216-9072235 | Msa0313620:intron | 25.0% |
| !! | ATTTTATTCAAACTCTGTAC+GGG | + | chr2_4:9072510-9072529 | None:intergenic | 25.0% |
| ! | AAGAACAATGATCCTTTATT+GGG | + | chr2_4:9072604-9072623 | None:intergenic | 25.0% |
| ! | AAAGAACAATGATCCTTTAT+TGG | + | chr2_4:9072605-9072624 | None:intergenic | 25.0% |
| !!! | AAAATAGTTTTGATCTCTTG+TGG | - | chr2_4:9072662-9072681 | Msa0313620:intron | 25.0% |
| ! | TTATAATGTTTGTAAAGCTG+TGG | - | chr2_4:9072868-9072887 | Msa0313620:intron | 25.0% |
| ! | AATTTGGAGGTTAATACAAT+AGG | - | chr2_4:9072953-9072972 | Msa0313620:intron | 25.0% |
| ! | TATTATTGATCATACAGTAG+TGG | + | chr2_4:9073008-9073027 | None:intergenic | 25.0% |
| ! | AATTATGTTATCAGTTGGTT+TGG | - | chr2_4:9073212-9073231 | Msa0313620:intron | 25.0% |
| ! | ATCTTTGATCCTTAAAGAAA+GGG | + | chr2_4:9073319-9073338 | None:intergenic | 25.0% |
| ! | TATCTTTGATCCTTAAAGAA+AGG | + | chr2_4:9073320-9073339 | None:intergenic | 25.0% |
| ! | TCTGCTTATAACATTCTTAA+AGG | - | chr2_4:9073340-9073359 | Msa0313620:intron | 25.0% |
| !!! | AATAAACTTTTTTCCAGTCA+GGG | + | chr2_4:9073885-9073904 | None:intergenic | 25.0% |
| !!! | AAATAAACTTTTTTCCAGTC+AGG | + | chr2_4:9073886-9073905 | None:intergenic | 25.0% |
| !! | TTTACCTTCTTTGTTTATCT+TGG | - | chr2_4:9073922-9073941 | Msa0313620:intron | 25.0% |
| TGAGAATGTAGTTATTGTAG+TGG | - | chr2_4:9071565-9071584 | Msa0313620:CDS | 30.0% | |
| TGTTTGAAAGAAATGGAAGA+GGG | + | chr2_4:9071640-9071659 | None:intergenic | 30.0% | |
| ATGTTTGAAAGAAATGGAAG+AGG | + | chr2_4:9071641-9071660 | None:intergenic | 30.0% | |
| TTCTTTCAAACATGACTAAG+AGG | - | chr2_4:9071648-9071667 | Msa0313620:CDS | 30.0% | |
| ! | AGGCCACAAATATATCTTTT+TGG | - | chr2_4:9071668-9071687 | Msa0313620:CDS | 30.0% |
| AAAGCAAAACAAAGCAAGAA+TGG | + | chr2_4:9071774-9071793 | None:intergenic | 30.0% | |
| ! | TTTATTAGTCTCATCGTGTT+AGG | - | chr2_4:9071870-9071889 | Msa0313620:intron | 30.0% |
| GTTGACATTGAGTTTATAAG+TGG | - | chr2_4:9071950-9071969 | Msa0313620:intron | 30.0% | |
| !! | GGTTTGTGTTTCTTTTGAAA+AGG | - | chr2_4:9072206-9072225 | Msa0313620:intron | 30.0% |
| GTTTGTTTGTAACATGTAAC+AGG | - | chr2_4:9072238-9072257 | Msa0313620:intron | 30.0% | |
| AAGAAAACAGTCAATGCAAT+CGG | + | chr2_4:9072374-9072393 | None:intergenic | 30.0% | |
| !!! | ATTGCATTGACTGTTTTCTT+TGG | - | chr2_4:9072374-9072393 | Msa0313620:intron | 30.0% |
| !!! | TTGCATTGACTGTTTTCTTT+GGG | - | chr2_4:9072375-9072394 | Msa0313620:intron | 30.0% |
| AAAGGATCATTGTTCTTTAG+TGG | - | chr2_4:9072607-9072626 | Msa0313620:intron | 30.0% | |
| CACATTCTAATAATGTTGCA+TGG | - | chr2_4:9072791-9072810 | Msa0313620:intron | 30.0% | |
| ACAATAGGTGATGTTAAATG+TGG | - | chr2_4:9072968-9072987 | Msa0313620:intron | 30.0% | |
| AACTGATAACATAATTGCAC+AGG | + | chr2_4:9073208-9073227 | None:intergenic | 30.0% | |
| TGTGCAATTATGTTATCAGT+TGG | - | chr2_4:9073207-9073226 | Msa0313620:intron | 30.0% | |
| !!! | AAGTTTTTTTTACACTTGCG+TGG | - | chr2_4:9073364-9073383 | Msa0313620:intron | 30.0% |
| ATGAACATTGATCAACCTAT+GGG | + | chr2_4:9073390-9073409 | None:intergenic | 30.0% | |
| ATATTCCTTACATTGATCTC+TGG | - | chr2_4:9073842-9073861 | Msa0313620:intron | 30.0% | |
| TAAGCCAAGATAAACAAAGA+AGG | + | chr2_4:9073929-9073948 | None:intergenic | 30.0% | |
| CATAACTCAAGTCACATATA+TGG | + | chr2_4:9074043-9074062 | None:intergenic | 30.0% | |
| ATAAAAAAGCTGAGAGATGA+AGG | - | chr2_4:9074218-9074237 | Msa0313620:five_prime_UTR | 30.0% | |
| GAGTTTATAAGTGGTGAAAC+TGG | - | chr2_4:9071959-9071978 | Msa0313620:intron | 35.0% | |
| ATTCATTGGAATCACGCATT+CGG | - | chr2_4:9071991-9072010 | Msa0313620:CDS | 35.0% | |
| AGTGTCTGATCTTGATCAAA+CGG | - | chr2_4:9072068-9072087 | Msa0313620:CDS | 35.0% | |
| !!! | TGCATTGACTGTTTTCTTTG+GGG | - | chr2_4:9072376-9072395 | Msa0313620:intron | 35.0% |
| TCTCCTTGTATTCATGTAGA+GGG | + | chr2_4:9072448-9072467 | None:intergenic | 35.0% | |
| TTCTCCTTGTATTCATGTAG+AGG | + | chr2_4:9072449-9072468 | None:intergenic | 35.0% | |
| ACTGTGTTGAAACCCAATAA+AGG | - | chr2_4:9072589-9072608 | Msa0313620:intron | 35.0% | |
| TGGATTTGATAAGTGTGCTT+TGG | - | chr2_4:9072682-9072701 | Msa0313620:intron | 35.0% | |
| AAGCATGGAATCAAACTCTT+TGG | + | chr2_4:9073037-9073056 | None:intergenic | 35.0% | |
| ! | TTTGATTCCATGCTTTTCTG+TGG | - | chr2_4:9073042-9073061 | Msa0313620:intron | 35.0% |
| ! | TTGATTCCATGCTTTTCTGT+GGG | - | chr2_4:9073043-9073062 | Msa0313620:intron | 35.0% |
| ! | AGAAAGAAGGCATGATGTTT+AGG | + | chr2_4:9073167-9073186 | None:intergenic | 35.0% |
| AGTAATGGCACAAAGAAAGA+AGG | + | chr2_4:9073180-9073199 | None:intergenic | 35.0% | |
| ! | TCTTTCTTTGTGCCATTACT+TGG | - | chr2_4:9073180-9073199 | Msa0313620:intron | 35.0% |
| TCATGTGAGCTGTTAAGTAT+AGG | - | chr2_4:9073237-9073256 | Msa0313620:intron | 35.0% | |
| AAGAATGGTCCCTTTCTTTA+AGG | - | chr2_4:9073307-9073326 | Msa0313620:intron | 35.0% | |
| CATGAACATTGATCAACCTA+TGG | + | chr2_4:9073391-9073410 | None:intergenic | 35.0% | |
| TTCTAGGCCTCTTGTATAAA+TGG | - | chr2_4:9073487-9073506 | Msa0313620:CDS | 35.0% | |
| ATGAGGATGACTTTACTTGT+CGG | + | chr2_4:9073558-9073577 | None:intergenic | 35.0% | |
| !! | CGACTCAGGTATTGTTTTAT+TGG | - | chr2_4:9073606-9073625 | Msa0313620:intron | 35.0% |
| TCCATTTGAGAATAATCCAG+AGG | - | chr2_4:9073747-9073766 | Msa0313620:intron | 35.0% | |
| CCATTTGAGAATAATCCAGA+GGG | - | chr2_4:9073748-9073767 | Msa0313620:intron | 35.0% | |
| GTAAGGAATATGACATTCAG+TGG | + | chr2_4:9073833-9073852 | None:intergenic | 35.0% | |
| AGGGTCAATATCAGATACAA+GGG | + | chr2_4:9074276-9074295 | None:intergenic | 35.0% | |
| TAGGGTCAATATCAGATACA+AGG | + | chr2_4:9074277-9074296 | None:intergenic | 35.0% | |
| !! | TTTTGGTGACTCAATCACTG+AGG | - | chr2_4:9071685-9071704 | Msa0313620:CDS | 40.0% |
| ACTGAGGAATCCTTTGATGT+TGG | - | chr2_4:9071701-9071720 | Msa0313620:intron | 40.0% | |
| AATCCTTTGATGTTGGAGGA+TGG | - | chr2_4:9071708-9071727 | Msa0313620:intron | 40.0% | |
| ATCCTTTGATGTTGGAGGAT+GGG | - | chr2_4:9071709-9071728 | Msa0313620:intron | 40.0% | |
| ACTGGATTCCATGCATTCAT+TGG | - | chr2_4:9071977-9071996 | Msa0313620:CDS | 40.0% | |
| TTCATTGGAATCACGCATTC+GGG | - | chr2_4:9071992-9072011 | Msa0313620:CDS | 40.0% | |
| CTCAAATTGTCGACCACTTA+TGG | + | chr2_4:9072124-9072143 | None:intergenic | 40.0% | |
| TAACATGTAACAGGCAGATG+TGG | - | chr2_4:9072247-9072266 | Msa0313620:intron | 40.0% | |
| ! | TGAAAAGCAGAGCATCTACT+GGG | + | chr2_4:9072419-9072438 | None:intergenic | 40.0% |
| ! | TTGAAAAGCAGAGCATCTAC+TGG | + | chr2_4:9072420-9072439 | None:intergenic | 40.0% |
| TGTCCCTCTACATGAATACA+AGG | - | chr2_4:9072442-9072461 | Msa0313620:intron | 40.0% | |
| TACCTTGAAGAAGGAGACAA+TGG | + | chr2_4:9072480-9072499 | None:intergenic | 40.0% | |
| TTCAAACTCTGTACGGGTAT+GGG | + | chr2_4:9072504-9072523 | None:intergenic | 40.0% | |
| ATTCAAACTCTGTACGGGTA+TGG | + | chr2_4:9072505-9072524 | None:intergenic | 40.0% | |
| ! | TAATGGGTATGCACACAATG+AGG | - | chr2_4:9072537-9072556 | Msa0313620:intron | 40.0% |
| AATGGGTATGCACACAATGA+GGG | - | chr2_4:9072538-9072557 | Msa0313620:intron | 40.0% | |
| TTTGGTCGCGTATATATTGC+AGG | - | chr2_4:9072700-9072719 | Msa0313620:intron | 40.0% | |
| GAGAACGAAAAGTTTCTCTC+TGG | - | chr2_4:9072843-9072862 | Msa0313620:intron | 40.0% | |
| CAAATTCCTGAAATCCCACA+GGG | + | chr2_4:9072939-9072958 | None:intergenic | 40.0% | |
| GTGATGTTAAATGTGGACTC+TGG | - | chr2_4:9072975-9072994 | Msa0313620:intron | 40.0% | |
| GTACGAGATGCTTGTGTAAA+AGG | - | chr2_4:9073076-9073095 | Msa0313620:intron | 40.0% | |
| ATTGCACAGGAACCAAGTAA+TGG | + | chr2_4:9073195-9073214 | None:intergenic | 40.0% | |
| ATAGGCATGCATGTTAGCAA+TGG | - | chr2_4:9073255-9073274 | Msa0313620:intron | 40.0% | |
| TAGGCATGCATGTTAGCAAT+GGG | - | chr2_4:9073256-9073275 | Msa0313620:intron | 40.0% | |
| GGAAAACCAACCTCTACTTT+AGG | - | chr2_4:9073279-9073298 | Msa0313620:intron | 40.0% | |
| TTCTTCCACTCCTAAAGTAG+AGG | + | chr2_4:9073292-9073311 | None:intergenic | 40.0% | |
| ! | CTACTTTAGGAGTGGAAGAA+TGG | - | chr2_4:9073292-9073311 | Msa0313620:intron | 40.0% |
| !! | CCATCGCTTCTGAAATTCAA+AGG | + | chr2_4:9073535-9073554 | None:intergenic | 40.0% |
| CCTTTGAATTTCAGAAGCGA+TGG | - | chr2_4:9073532-9073551 | Msa0313620:CDS | 40.0% | |
| AGTCGTGCAACTTCATCAAT+GGG | + | chr2_4:9073591-9073610 | None:intergenic | 40.0% | |
| CCCTCTGGATTATTCTCAAA+TGG | + | chr2_4:9073751-9073770 | None:intergenic | 40.0% | |
| TTGGTCCAGAGATCAATGTA+AGG | + | chr2_4:9073850-9073869 | None:intergenic | 40.0% | |
| TGTTTACCGAAATGCAGTGA+CGG | - | chr2_4:9074149-9074168 | Msa0313620:CDS | 40.0% | |
| GACGGTTTGCATCTAACTAA+CGG | - | chr2_4:9074167-9074186 | Msa0313620:CDS | 40.0% | |
| GTTTGCATCTAACTAACGGA+GGG | - | chr2_4:9074171-9074190 | Msa0313620:CDS | 40.0% | |
| GGTCAATATCAGATACAAGG+GGG | + | chr2_4:9074274-9074293 | None:intergenic | 40.0% | |
| GGGTCAATATCAGATACAAG+GGG | + | chr2_4:9074275-9074294 | None:intergenic | 40.0% | |
| ! | ATGCCTTTAAGGGGTCATTA+GGG | + | chr2_4:9074295-9074314 | None:intergenic | 40.0% |
| ! | AATGCCTTTAAGGGGTCATT+AGG | + | chr2_4:9074296-9074315 | None:intergenic | 40.0% |
| GAGGAATCCTTTGATGTTGG+AGG | - | chr2_4:9071704-9071723 | Msa0313620:intron | 45.0% | |
| TCCTTTGATGTTGGAGGATG+GGG | - | chr2_4:9071710-9071729 | Msa0313620:intron | 45.0% | |
| ! | TGCCAACTATTTCTCACGCA+CGG | - | chr2_4:9071742-9071761 | Msa0313620:intron | 45.0% |
| TACCGTGCGTGAGAAATAGT+TGG | + | chr2_4:9071747-9071766 | None:intergenic | 45.0% | |
| GCGTGATTCCAATGAATGCA+TGG | + | chr2_4:9071988-9072007 | None:intergenic | 45.0% | |
| !! | TCTTCGCATTCAGGTATTGG+TGG | + | chr2_4:9072094-9072113 | None:intergenic | 45.0% |
| AATACCTGAATGCGAAGAGC+CGG | - | chr2_4:9072096-9072115 | Msa0313620:CDS | 45.0% | |
| TTGTCGACCACTTATGGATC+CGG | + | chr2_4:9072118-9072137 | None:intergenic | 45.0% | |
| ! | TGGTGCTAAGAGGGTATAGT+GGG | - | chr2_4:9072267-9072286 | Msa0313620:CDS | 45.0% |
| ! | AGAGTTTTCCCTGTGTCACA+AGG | - | chr2_4:9072323-9072342 | Msa0313620:intron | 45.0% |
| CAATGCAATCGGAGCAGTTT+CGG | + | chr2_4:9072363-9072382 | None:intergenic | 45.0% | |
| AGAAGGAGACAATGGAGCAA+AGG | + | chr2_4:9072472-9072491 | None:intergenic | 45.0% | |
| CTCCATTGTCTCCTTCTTCA+AGG | - | chr2_4:9072475-9072494 | Msa0313620:intron | 45.0% | |
| ! | GGTATGGGTTACCTTGAAGA+AGG | + | chr2_4:9072489-9072508 | None:intergenic | 45.0% |
| GTATGCACACAATGAGGGAT+TGG | - | chr2_4:9072543-9072562 | Msa0313620:intron | 45.0% | |
| ! | AGGGATTGGCACAGATTATC+AGG | - | chr2_4:9072557-9072576 | Msa0313620:intron | 45.0% |
| TTGTTCTTTAGTGGCACAGC+AGG | - | chr2_4:9072616-9072635 | Msa0313620:intron | 45.0% | |
| ACGGCTATAGTGTAGGACTA+GGG | - | chr2_4:9072899-9072918 | Msa0313620:intron | 45.0% | |
| CCAAATTCCTGAAATCCCAC+AGG | + | chr2_4:9072940-9072959 | None:intergenic | 45.0% | |
| CCTGTGGGATTTCAGGAATT+TGG | - | chr2_4:9072937-9072956 | Msa0313620:intron | 45.0% | |
| GTGGGATTTCAGGAATTTGG+AGG | - | chr2_4:9072940-9072959 | Msa0313620:intron | 45.0% | |
| ! | TCCATGCTTTTCTGTGGGAA+TGG | - | chr2_4:9073048-9073067 | Msa0313620:intron | 45.0% |
| TCCATTCCCACAGAAAAGCA+TGG | + | chr2_4:9073052-9073071 | None:intergenic | 45.0% | |
| ! | CTTTTCTGTGGGAATGGAGT+TGG | - | chr2_4:9073054-9073073 | Msa0313620:intron | 45.0% |
| AGGCATGCATGTTAGCAATG+GGG | - | chr2_4:9073257-9073276 | Msa0313620:intron | 45.0% | |
| ! | ACCAACCTCTACTTTAGGAG+TGG | - | chr2_4:9073284-9073303 | Msa0313620:intron | 45.0% |
| TCCACTCCTAAAGTAGAGGT+TGG | + | chr2_4:9073288-9073307 | None:intergenic | 45.0% | |
| GAGTCGTGCAACTTCATCAA+TGG | + | chr2_4:9073592-9073611 | None:intergenic | 45.0% | |
| TTGATGAAGTTGCACGACTC+AGG | - | chr2_4:9073592-9073611 | Msa0313620:CDS | 45.0% | |
| GCAGCTTCATTAGTCCTTTC+AGG | + | chr2_4:9073778-9073797 | None:intergenic | 45.0% | |
| GAAAGGACTAATGAAGCTGC+TGG | - | chr2_4:9073778-9073797 | Msa0313620:intron | 45.0% | |
| ! | GTCAGGGAACTGTTGCATTT+TGG | + | chr2_4:9073869-9073888 | None:intergenic | 45.0% |
| AAATGCAACAGTTCCCTGAC+TGG | - | chr2_4:9073869-9073888 | Msa0313620:intron | 45.0% | |
| TGCAAACCGTCACTGCATTT+CGG | + | chr2_4:9074158-9074177 | None:intergenic | 45.0% | |
| GGTTTGCATCTAACTAACGG+AGG | - | chr2_4:9074170-9074189 | Msa0313620:CDS | 45.0% | |
| TGACCCTAATGACCCCTTAA+AGG | - | chr2_4:9074289-9074308 | Msa0313620:five_prime_UTR | 45.0% | |
| !!! | AATAATAATTATTTTTCATT+TGG | - | chr2_4:9072730-9072749 | Msa0313620:intron | 5.0% |
| !! | ATAAAAAAAATAAAAAAAAG+TGG | + | chr2_4:9073103-9073122 | None:intergenic | 5.0% |
| ACCCCATCCTCCAACATCAA+AGG | + | chr2_4:9071714-9071733 | None:intergenic | 50.0% | |
| GGCTCTTCGCATTCAGGTAT+TGG | + | chr2_4:9072097-9072116 | None:intergenic | 50.0% | |
| ! | AGGCAGATGTGGTGCTAAGA+GGG | - | chr2_4:9072258-9072277 | Msa0313620:CDS | 50.0% |
| ! | GTGGTGCTAAGAGGGTATAG+TGG | - | chr2_4:9072266-9072285 | Msa0313620:CDS | 50.0% |
| !! | GGTATAGTGGGTACAACACG+AGG | - | chr2_4:9072279-9072298 | Msa0313620:CDS | 50.0% |
| !! | ATAGTGGGTACAACACGAGG+TGG | - | chr2_4:9072282-9072301 | Msa0313620:CDS | 50.0% |
| ! | TAGTGGGTACAACACGAGGT+GGG | - | chr2_4:9072283-9072302 | Msa0313620:CDS | 50.0% |
| ! | GTTTTCCCTGTGTCACAAGG+CGG | - | chr2_4:9072326-9072345 | Msa0313620:intron | 50.0% |
| TTCTTTAGTGGCACAGCAGG+AGG | - | chr2_4:9072619-9072638 | Msa0313620:intron | 50.0% | |
| TAAAGCTGTGGCACAGTGCA+CGG | - | chr2_4:9072880-9072899 | Msa0313620:intron | 50.0% | |
| ACAGTGCACGGCTATAGTGT+AGG | - | chr2_4:9072892-9072911 | Msa0313620:intron | 50.0% | |
| CACGGCTATAGTGTAGGACT+AGG | - | chr2_4:9072898-9072917 | Msa0313620:intron | 50.0% | |
| GGCATGCATGTTAGCAATGG+GGG | - | chr2_4:9073258-9073277 | Msa0313620:intron | 50.0% | |
| TTTACACTTGCGTGGCCCAT+AGG | - | chr2_4:9073372-9073391 | Msa0313620:intron | 50.0% | |
| CAATGGGAGGAGGAGTTATG+AGG | + | chr2_4:9073575-9073594 | None:intergenic | 50.0% | |
| GCAACTTCATCAATGGGAGG+AGG | + | chr2_4:9073585-9073604 | None:intergenic | 50.0% | |
| CGTGCAACTTCATCAATGGG+AGG | + | chr2_4:9073588-9073607 | None:intergenic | 50.0% | |
| ATCCAGAGGGTCTTCCTGAA+AGG | - | chr2_4:9073761-9073780 | Msa0313620:intron | 50.0% | |
| TGCTAGAGCATGCATTGCTG+TGG | - | chr2_4:9073807-9073826 | Msa0313620:intron | 50.0% | |
| GATACAAGGGGGAGATCAAC+TGG | + | chr2_4:9074263-9074282 | None:intergenic | 50.0% | |
| CGAAGAGCCGGATCCATAAG+TGG | - | chr2_4:9072108-9072127 | Msa0313620:CDS | 55.0% | |
| ! | CAGGCAGATGTGGTGCTAAG+AGG | - | chr2_4:9072257-9072276 | Msa0313620:intron | 55.0% |
| TGTCACCGCCTTGTGACACA+GGG | + | chr2_4:9072334-9072353 | None:intergenic | 55.0% | |
| ACATGGCCCTGTGGGATTTC+AGG | - | chr2_4:9072930-9072949 | Msa0313620:intron | 55.0% | |
| GTCCTTTCAGGAAGACCCTC+TGG | + | chr2_4:9073766-9073785 | None:intergenic | 55.0% | |
| GGATCCGGCTCTTCGCATTC+AGG | + | chr2_4:9072103-9072122 | None:intergenic | 60.0% | |
| !! | CAACACGAGGTGGGCACTGA+AGG | - | chr2_4:9072292-9072311 | Msa0313620:CDS | 60.0% |
| !! | GAGGTGGGCACTGAAGGTGT+TGG | - | chr2_4:9072298-9072317 | Msa0313620:CDS | 60.0% |
| CTGTCACCGCCTTGTGACAC+AGG | + | chr2_4:9072335-9072354 | None:intergenic | 60.0% | |
| GTGTCACAAGGCGGTGACAG+TGG | - | chr2_4:9072335-9072354 | Msa0313620:intron | 60.0% | |
| GGACTAGGGATGCACGCACA+TGG | - | chr2_4:9072913-9072932 | Msa0313620:intron | 60.0% | |
| ATGCACGCACATGGCCCTGT+GGG | - | chr2_4:9072922-9072941 | Msa0313620:intron | 60.0% | |
| GATGCACGCACATGGCCCTG+TGG | - | chr2_4:9072921-9072940 | Msa0313620:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 9071549 | 9074322 | 9071549 | ID=Msa0313620;Name=Msa0313620 |
| chr2_4 | mRNA | 9071549 | 9074322 | 9071549 | ID=Msa0313620-mRNA-1;Parent=Msa0313620;Name=Msa0313620-mRNA-1;_AED=0.35;_eAED=0.35;_QI=110|1|0.8|1|1|1|5|0|243 |
| chr2_4 | exon | 9071549 | 9071705 | 9071549 | ID=Msa0313620-mRNA-1:exon:3505;Parent=Msa0313620-mRNA-1 |
| chr2_4 | exon | 9071963 | 9072127 | 9071963 | ID=Msa0313620-mRNA-1:exon:3504;Parent=Msa0313620-mRNA-1 |
| chr2_4 | exon | 9072258 | 9072325 | 9072258 | ID=Msa0313620-mRNA-1:exon:3503;Parent=Msa0313620-mRNA-1 |
| chr2_4 | exon | 9073375 | 9073611 | 9073375 | ID=Msa0313620-mRNA-1:exon:3502;Parent=Msa0313620-mRNA-1 |
| chr2_4 | exon | 9074108 | 9074322 | 9074108 | ID=Msa0313620-mRNA-1:exon:3501;Parent=Msa0313620-mRNA-1 |
| chr2_4 | five_prime_UTR | 9074213 | 9074322 | 9074213 | ID=Msa0313620-mRNA-1:five_prime_utr;Parent=Msa0313620-mRNA-1 |
| chr2_4 | CDS | 9074108 | 9074212 | 9074108 | ID=Msa0313620-mRNA-1:cds;Parent=Msa0313620-mRNA-1 |
| chr2_4 | CDS | 9073375 | 9073611 | 9073375 | ID=Msa0313620-mRNA-1:cds;Parent=Msa0313620-mRNA-1 |
| chr2_4 | CDS | 9072258 | 9072325 | 9072258 | ID=Msa0313620-mRNA-1:cds;Parent=Msa0313620-mRNA-1 |
| chr2_4 | CDS | 9071963 | 9072127 | 9071963 | ID=Msa0313620-mRNA-1:cds;Parent=Msa0313620-mRNA-1 |
| chr2_4 | CDS | 9071549 | 9071705 | 9071549 | ID=Msa0313620-mRNA-1:cds;Parent=Msa0313620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
